Multiple sequence alignment - TraesCS2A01G060700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G060700 chr2A 100.000 7010 0 0 1 7010 27337967 27344976 0.000000e+00 12946.0
1 TraesCS2A01G060700 chr2A 90.445 607 58 0 3284 3890 27329379 27329985 0.000000e+00 800.0
2 TraesCS2A01G060700 chr2A 87.354 601 52 17 4283 4877 27330394 27330976 0.000000e+00 667.0
3 TraesCS2A01G060700 chr2A 79.522 962 99 54 6127 7010 36671753 36672694 4.680000e-166 595.0
4 TraesCS2A01G060700 chr2A 84.560 557 71 10 2280 2826 27328598 27329149 8.000000e-149 538.0
5 TraesCS2A01G060700 chr2A 84.882 549 55 10 5093 5637 27331102 27331626 4.820000e-146 529.0
6 TraesCS2A01G060700 chr2A 85.867 467 40 9 6537 6988 36743387 36742932 2.290000e-129 473.0
7 TraesCS2A01G060700 chr2A 88.140 371 29 8 3927 4286 27329983 27330349 1.810000e-115 427.0
8 TraesCS2A01G060700 chr2A 84.615 351 33 9 6663 7010 36693732 36694064 5.240000e-86 329.0
9 TraesCS2A01G060700 chr2A 79.052 401 63 15 1782 2168 27328063 27328456 9.020000e-64 255.0
10 TraesCS2A01G060700 chr2A 87.204 211 16 8 934 1134 27327452 27327661 5.470000e-56 230.0
11 TraesCS2A01G060700 chr2A 80.201 298 29 20 1150 1428 27327523 27327809 5.550000e-46 196.0
12 TraesCS2A01G060700 chr2A 84.409 186 15 9 5678 5861 27331636 27331809 3.360000e-38 171.0
13 TraesCS2A01G060700 chr2A 76.608 171 22 13 5919 6087 36744943 36744789 2.100000e-10 78.7
14 TraesCS2A01G060700 chr2D 95.414 4339 126 20 1782 6087 24562795 24558497 0.000000e+00 6842.0
15 TraesCS2A01G060700 chr2D 84.286 1400 143 38 4286 5640 24703336 24701969 0.000000e+00 1295.0
16 TraesCS2A01G060700 chr2D 89.274 606 50 9 3284 3889 24704338 24703748 0.000000e+00 745.0
17 TraesCS2A01G060700 chr2D 84.858 667 62 17 506 1134 24563783 24563118 2.760000e-178 636.0
18 TraesCS2A01G060700 chr2D 84.767 558 69 11 2279 2826 24705116 24704565 4.780000e-151 545.0
19 TraesCS2A01G060700 chr2D 86.837 471 45 12 6537 7003 24557652 24557195 1.740000e-140 510.0
20 TraesCS2A01G060700 chr2D 89.717 389 29 6 6127 6513 24558099 24557720 2.940000e-133 486.0
21 TraesCS2A01G060700 chr2D 89.101 367 26 6 3930 4286 24703746 24703384 1.790000e-120 444.0
22 TraesCS2A01G060700 chr2D 84.731 465 41 15 6567 7010 33878828 33878373 8.350000e-119 438.0
23 TraesCS2A01G060700 chr2D 80.407 393 59 12 1791 2171 24705640 24705254 4.140000e-72 283.0
24 TraesCS2A01G060700 chr2D 83.333 222 24 7 1963 2184 7586286 7586078 7.180000e-45 193.0
25 TraesCS2A01G060700 chr2D 81.273 267 24 14 1150 1408 24706517 24706269 7.180000e-45 193.0
26 TraesCS2A01G060700 chr2D 89.815 108 7 4 5681 5787 24701959 24701855 1.230000e-27 135.0
27 TraesCS2A01G060700 chr2D 78.698 169 14 9 5919 6087 33880198 33880052 7.490000e-15 93.5
28 TraesCS2A01G060700 chr2D 93.443 61 3 1 6027 6087 33731983 33731924 9.680000e-14 89.8
29 TraesCS2A01G060700 chr2B 91.129 3641 216 48 2399 5977 40275719 40279314 0.000000e+00 4835.0
30 TraesCS2A01G060700 chr2B 86.733 799 79 17 4283 5068 40068958 40069742 0.000000e+00 863.0
31 TraesCS2A01G060700 chr2B 90.562 498 47 0 3284 3781 40067994 40068491 0.000000e+00 660.0
32 TraesCS2A01G060700 chr2B 79.386 912 92 49 6180 7010 55914206 55913310 7.940000e-154 555.0
33 TraesCS2A01G060700 chr2B 91.117 394 33 2 6127 6519 40279538 40279930 3.720000e-147 532.0
34 TraesCS2A01G060700 chr2B 88.409 440 27 10 1804 2234 40275295 40275719 6.270000e-140 508.0
35 TraesCS2A01G060700 chr2B 83.633 556 70 14 2279 2825 40067220 40067763 2.920000e-138 503.0
36 TraesCS2A01G060700 chr2B 81.325 664 66 22 6391 7008 55924587 55923936 2.940000e-133 486.0
37 TraesCS2A01G060700 chr2B 82.852 554 62 11 5093 5637 40069817 40070346 3.830000e-127 466.0
38 TraesCS2A01G060700 chr2B 83.438 477 50 19 6537 7005 40279984 40280439 3.910000e-112 416.0
39 TraesCS2A01G060700 chr2B 87.366 372 30 9 3927 4286 40068547 40068913 1.820000e-110 411.0
40 TraesCS2A01G060700 chr2B 82.515 509 42 21 673 1134 40274490 40274998 3.050000e-108 403.0
41 TraesCS2A01G060700 chr2B 90.698 301 20 3 5505 5803 618098094 618098388 1.830000e-105 394.0
42 TraesCS2A01G060700 chr2B 95.495 222 9 1 214 435 672040697 672040477 3.110000e-93 353.0
43 TraesCS2A01G060700 chr2B 79.750 400 62 13 1782 2168 40066653 40067046 8.960000e-69 272.0
44 TraesCS2A01G060700 chr2B 77.539 512 73 20 1782 2278 253939376 253939860 3.220000e-68 270.0
45 TraesCS2A01G060700 chr2B 88.940 217 24 0 1 217 40273817 40274033 1.160000e-67 268.0
46 TraesCS2A01G060700 chr2B 78.252 469 52 24 1153 1612 40274864 40275291 9.020000e-64 255.0
47 TraesCS2A01G060700 chr2B 84.211 266 31 7 891 1149 40066006 40066267 1.510000e-61 248.0
48 TraesCS2A01G060700 chr2B 82.528 269 23 13 1150 1409 40066118 40066371 1.530000e-51 215.0
49 TraesCS2A01G060700 chr2B 86.916 107 8 6 5678 5783 40070356 40070457 1.600000e-21 115.0
50 TraesCS2A01G060700 chr5B 92.256 297 14 4 5509 5803 49007518 49007229 5.060000e-111 412.0
51 TraesCS2A01G060700 chr5B 94.690 226 12 0 211 436 528889138 528889363 1.120000e-92 351.0
52 TraesCS2A01G060700 chr5B 81.846 325 49 7 6662 6982 595659516 595659198 1.500000e-66 265.0
53 TraesCS2A01G060700 chr6A 96.889 225 5 2 214 437 315613835 315613612 6.640000e-100 375.0
54 TraesCS2A01G060700 chr6A 93.506 231 14 1 215 445 482648618 482648847 6.730000e-90 342.0
55 TraesCS2A01G060700 chr6B 95.045 222 10 1 214 435 8131742 8131962 1.450000e-91 348.0
56 TraesCS2A01G060700 chr7D 94.248 226 13 0 214 439 520968096 520967871 5.200000e-91 346.0
57 TraesCS2A01G060700 chr1D 94.595 222 11 1 214 435 378803591 378803811 6.730000e-90 342.0
58 TraesCS2A01G060700 chr3B 93.805 226 14 0 217 442 167964105 167963880 2.420000e-89 340.0
59 TraesCS2A01G060700 chr3B 82.500 200 24 9 960 1149 803436047 803436245 1.560000e-36 165.0
60 TraesCS2A01G060700 chr3B 82.000 200 25 9 960 1149 803434236 803434434 7.280000e-35 159.0
61 TraesCS2A01G060700 chr3B 81.000 200 27 8 960 1149 803481313 803481511 1.580000e-31 148.0
62 TraesCS2A01G060700 chr1B 93.074 231 14 1 208 436 493241792 493242022 3.130000e-88 337.0
63 TraesCS2A01G060700 chr1B 79.365 504 69 18 1782 2278 463521283 463521758 8.770000e-84 322.0
64 TraesCS2A01G060700 chrUn 82.500 200 24 9 960 1149 319885070 319884872 1.560000e-36 165.0
65 TraesCS2A01G060700 chrUn 82.500 200 24 9 960 1149 360410292 360410094 1.560000e-36 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G060700 chr2A 27337967 27344976 7009 False 12946.000000 12946 100.000000 1 7010 1 chr2A.!!$F1 7009
1 TraesCS2A01G060700 chr2A 36671753 36672694 941 False 595.000000 595 79.522000 6127 7010 1 chr2A.!!$F2 883
2 TraesCS2A01G060700 chr2A 27327452 27331809 4357 False 423.666667 800 85.138556 934 5861 9 chr2A.!!$F4 4927
3 TraesCS2A01G060700 chr2A 36742932 36744943 2011 True 275.850000 473 81.237500 5919 6988 2 chr2A.!!$R1 1069
4 TraesCS2A01G060700 chr2D 24557195 24563783 6588 True 2118.500000 6842 89.206500 506 7003 4 chr2D.!!$R3 6497
5 TraesCS2A01G060700 chr2D 24701855 24706517 4662 True 520.000000 1295 85.560429 1150 5787 7 chr2D.!!$R4 4637
6 TraesCS2A01G060700 chr2D 33878373 33880198 1825 True 265.750000 438 81.714500 5919 7010 2 chr2D.!!$R5 1091
7 TraesCS2A01G060700 chr2B 40273817 40280439 6622 False 1031.000000 4835 86.257143 1 7005 7 chr2B.!!$F4 7004
8 TraesCS2A01G060700 chr2B 55913310 55914206 896 True 555.000000 555 79.386000 6180 7010 1 chr2B.!!$R1 830
9 TraesCS2A01G060700 chr2B 55923936 55924587 651 True 486.000000 486 81.325000 6391 7008 1 chr2B.!!$R2 617
10 TraesCS2A01G060700 chr2B 40066006 40070457 4451 False 417.000000 863 84.950111 891 5783 9 chr2B.!!$F3 4892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
671 910 0.034198 TCGTCGGTTTCTCCAATGCA 59.966 50.000 0.00 0.00 35.57 3.96 F
1416 1741 0.174162 GTGTTGAATCTGCCATGGCC 59.826 55.000 33.44 18.08 41.09 5.36 F
1518 1845 0.174617 GAGGCGCAGTTCTTAGCTCT 59.825 55.000 10.83 0.00 0.00 4.09 F
2297 3010 0.249405 CAAGGATCTCAGAGCTCGGC 60.249 60.000 9.22 0.00 0.00 5.54 F
2971 3693 0.967380 GCCTGGTTCCATCACCCAAG 60.967 60.000 0.00 0.00 35.73 3.61 F
3002 3724 2.037772 AGGATGTTTCTGACGCTGAAGT 59.962 45.455 0.00 0.00 0.00 3.01 F
4630 5419 0.941542 TTTACTGCTGTGCAACCGAC 59.058 50.000 6.48 0.00 38.41 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 1827 0.108424 CAGAGCTAAGAACTGCGCCT 60.108 55.000 4.18 0.0 0.00 5.52 R
2254 2910 1.275291 TCTGAGGGTGAAGTTAAGGCG 59.725 52.381 0.00 0.0 0.00 5.52 R
2533 3246 1.337167 TGCACAGGACTGACTTCATCG 60.337 52.381 6.29 0.0 0.00 3.84 R
3631 4353 0.179018 ACAGTTGGTGGGCTCAGAAC 60.179 55.000 0.00 0.0 0.00 3.01 R
3928 4650 2.404789 CGCCCTAGTTTGCGCATG 59.595 61.111 12.75 0.0 44.64 4.06 R
4963 5789 5.447818 GCACTAATTAATGCACAGACAGGAC 60.448 44.000 13.75 0.0 41.65 3.85 R
6119 7511 1.134280 AGTGATAGCAATGAAGCCGCT 60.134 47.619 0.00 0.0 39.80 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.868251 GTGGTCTCGTCGACATCGC 60.868 63.158 17.16 0.00 44.68 4.58
36 37 1.332195 CATCGCAGAGGAGGGTATGA 58.668 55.000 0.00 0.00 43.16 2.15
49 50 3.104512 AGGGTATGAGATTGTTCGGTCA 58.895 45.455 0.00 0.00 0.00 4.02
52 53 3.865745 GGTATGAGATTGTTCGGTCACTG 59.134 47.826 0.00 0.00 0.00 3.66
74 75 0.764890 TTTCTGGAGTGGTGGACCTG 59.235 55.000 0.00 0.00 36.82 4.00
104 105 2.126618 TGTCACGCGGCTACTTCG 60.127 61.111 12.47 0.00 0.00 3.79
108 109 1.443872 CACGCGGCTACTTCGAAGT 60.444 57.895 31.70 31.70 42.91 3.01
112 113 1.711206 GCGGCTACTTCGAAGTCTTT 58.289 50.000 32.86 12.49 40.37 2.52
117 118 3.067833 GCTACTTCGAAGTCTTTTGGCT 58.932 45.455 32.86 9.12 40.37 4.75
127 128 0.392706 TCTTTTGGCTGAGCAGACGA 59.607 50.000 6.82 0.00 40.06 4.20
128 129 0.514691 CTTTTGGCTGAGCAGACGAC 59.485 55.000 6.82 0.00 40.06 4.34
146 147 3.110178 GTCGTTTCGTGGGCCTCG 61.110 66.667 21.26 21.26 0.00 4.63
157 158 1.743252 GGGCCTCGTTCTGCTTCTG 60.743 63.158 0.84 0.00 0.00 3.02
158 159 2.394563 GGCCTCGTTCTGCTTCTGC 61.395 63.158 0.00 0.00 40.20 4.26
161 162 1.347817 CCTCGTTCTGCTTCTGCGAC 61.348 60.000 0.00 0.00 43.34 5.19
166 167 1.193426 GTTCTGCTTCTGCGACTTGAC 59.807 52.381 0.00 0.00 43.34 3.18
167 168 0.319900 TCTGCTTCTGCGACTTGACC 60.320 55.000 0.00 0.00 43.34 4.02
173 174 1.079819 CTGCGACTTGACCGGTGAT 60.080 57.895 14.63 0.00 0.00 3.06
175 176 1.374252 GCGACTTGACCGGTGATGT 60.374 57.895 14.63 13.25 0.00 3.06
179 180 2.489971 GACTTGACCGGTGATGTTCAA 58.510 47.619 14.63 8.04 0.00 2.69
181 182 1.535462 CTTGACCGGTGATGTTCAACC 59.465 52.381 14.63 0.00 27.88 3.77
205 206 0.833287 TTCTGCATCACTAGGGAGCC 59.167 55.000 0.00 0.00 0.00 4.70
206 207 1.050988 TCTGCATCACTAGGGAGCCC 61.051 60.000 0.00 0.00 0.00 5.19
223 224 2.584608 CGTGAGGTTAGGGCCCAG 59.415 66.667 27.56 0.00 0.00 4.45
224 225 2.291043 CGTGAGGTTAGGGCCCAGT 61.291 63.158 27.56 6.67 0.00 4.00
225 226 1.838073 CGTGAGGTTAGGGCCCAGTT 61.838 60.000 27.56 5.74 0.00 3.16
226 227 0.035343 GTGAGGTTAGGGCCCAGTTC 60.035 60.000 27.56 14.25 0.00 3.01
227 228 0.178873 TGAGGTTAGGGCCCAGTTCT 60.179 55.000 27.56 16.04 0.00 3.01
228 229 0.992695 GAGGTTAGGGCCCAGTTCTT 59.007 55.000 27.56 3.89 0.00 2.52
229 230 1.354705 GAGGTTAGGGCCCAGTTCTTT 59.645 52.381 27.56 2.98 0.00 2.52
230 231 1.787058 AGGTTAGGGCCCAGTTCTTTT 59.213 47.619 27.56 2.06 0.00 2.27
231 232 1.893137 GGTTAGGGCCCAGTTCTTTTG 59.107 52.381 27.56 0.00 0.00 2.44
232 233 1.272490 GTTAGGGCCCAGTTCTTTTGC 59.728 52.381 27.56 0.00 0.00 3.68
233 234 0.251608 TAGGGCCCAGTTCTTTTGCC 60.252 55.000 27.56 0.00 41.42 4.52
234 235 1.836604 GGGCCCAGTTCTTTTGCCA 60.837 57.895 19.95 0.00 43.96 4.92
235 236 1.667722 GGCCCAGTTCTTTTGCCAG 59.332 57.895 0.00 0.00 41.76 4.85
236 237 0.827507 GGCCCAGTTCTTTTGCCAGA 60.828 55.000 0.00 0.00 41.76 3.86
237 238 1.039856 GCCCAGTTCTTTTGCCAGAA 58.960 50.000 0.00 0.00 0.00 3.02
238 239 1.620323 GCCCAGTTCTTTTGCCAGAAT 59.380 47.619 0.00 0.00 35.23 2.40
239 240 2.353109 GCCCAGTTCTTTTGCCAGAATC 60.353 50.000 0.00 0.00 35.23 2.52
240 241 3.160269 CCCAGTTCTTTTGCCAGAATCT 58.840 45.455 0.00 0.00 35.23 2.40
241 242 3.057033 CCCAGTTCTTTTGCCAGAATCTG 60.057 47.826 2.68 2.68 35.23 2.90
263 264 3.336138 GGATTATCCCAGAATCCGACC 57.664 52.381 0.00 0.00 42.18 4.79
264 265 2.027100 GGATTATCCCAGAATCCGACCC 60.027 54.545 0.00 0.00 42.18 4.46
265 266 1.430992 TTATCCCAGAATCCGACCCC 58.569 55.000 0.00 0.00 0.00 4.95
266 267 0.566176 TATCCCAGAATCCGACCCCT 59.434 55.000 0.00 0.00 0.00 4.79
267 268 0.566176 ATCCCAGAATCCGACCCCTA 59.434 55.000 0.00 0.00 0.00 3.53
268 269 0.566176 TCCCAGAATCCGACCCCTAT 59.434 55.000 0.00 0.00 0.00 2.57
269 270 0.977395 CCCAGAATCCGACCCCTATC 59.023 60.000 0.00 0.00 0.00 2.08
270 271 0.977395 CCAGAATCCGACCCCTATCC 59.023 60.000 0.00 0.00 0.00 2.59
271 272 1.717032 CAGAATCCGACCCCTATCCA 58.283 55.000 0.00 0.00 0.00 3.41
272 273 1.620819 CAGAATCCGACCCCTATCCAG 59.379 57.143 0.00 0.00 0.00 3.86
273 274 1.220750 AGAATCCGACCCCTATCCAGT 59.779 52.381 0.00 0.00 0.00 4.00
274 275 2.047830 GAATCCGACCCCTATCCAGTT 58.952 52.381 0.00 0.00 0.00 3.16
275 276 2.191981 ATCCGACCCCTATCCAGTTT 57.808 50.000 0.00 0.00 0.00 2.66
276 277 1.492764 TCCGACCCCTATCCAGTTTC 58.507 55.000 0.00 0.00 0.00 2.78
277 278 1.007963 TCCGACCCCTATCCAGTTTCT 59.992 52.381 0.00 0.00 0.00 2.52
278 279 1.413077 CCGACCCCTATCCAGTTTCTC 59.587 57.143 0.00 0.00 0.00 2.87
279 280 1.413077 CGACCCCTATCCAGTTTCTCC 59.587 57.143 0.00 0.00 0.00 3.71
280 281 1.769465 GACCCCTATCCAGTTTCTCCC 59.231 57.143 0.00 0.00 0.00 4.30
281 282 1.082194 ACCCCTATCCAGTTTCTCCCA 59.918 52.381 0.00 0.00 0.00 4.37
282 283 1.771255 CCCCTATCCAGTTTCTCCCAG 59.229 57.143 0.00 0.00 0.00 4.45
283 284 2.629639 CCCCTATCCAGTTTCTCCCAGA 60.630 54.545 0.00 0.00 0.00 3.86
284 285 3.115390 CCCTATCCAGTTTCTCCCAGAA 58.885 50.000 0.00 0.00 31.28 3.02
285 286 3.718956 CCCTATCCAGTTTCTCCCAGAAT 59.281 47.826 0.00 0.00 33.67 2.40
286 287 4.202409 CCCTATCCAGTTTCTCCCAGAATC 60.202 50.000 0.00 0.00 33.67 2.52
287 288 4.657969 CCTATCCAGTTTCTCCCAGAATCT 59.342 45.833 0.00 0.00 35.32 2.40
288 289 5.131809 CCTATCCAGTTTCTCCCAGAATCTT 59.868 44.000 0.00 0.00 33.32 2.40
289 290 5.527026 ATCCAGTTTCTCCCAGAATCTTT 57.473 39.130 0.00 0.00 33.32 2.52
290 291 4.655963 TCCAGTTTCTCCCAGAATCTTTG 58.344 43.478 0.00 0.00 33.32 2.77
291 292 4.350816 TCCAGTTTCTCCCAGAATCTTTGA 59.649 41.667 0.00 0.00 33.32 2.69
292 293 4.699257 CCAGTTTCTCCCAGAATCTTTGAG 59.301 45.833 0.62 0.62 33.32 3.02
293 294 4.155644 CAGTTTCTCCCAGAATCTTTGAGC 59.844 45.833 1.93 0.00 33.32 4.26
294 295 3.356529 TTCTCCCAGAATCTTTGAGCC 57.643 47.619 1.93 0.00 0.00 4.70
295 296 1.561542 TCTCCCAGAATCTTTGAGCCC 59.438 52.381 1.93 0.00 0.00 5.19
296 297 0.625849 TCCCAGAATCTTTGAGCCCC 59.374 55.000 0.00 0.00 0.00 5.80
297 298 0.332632 CCCAGAATCTTTGAGCCCCA 59.667 55.000 0.00 0.00 0.00 4.96
298 299 1.063417 CCCAGAATCTTTGAGCCCCAT 60.063 52.381 0.00 0.00 0.00 4.00
299 300 2.625087 CCCAGAATCTTTGAGCCCCATT 60.625 50.000 0.00 0.00 0.00 3.16
300 301 3.102204 CCAGAATCTTTGAGCCCCATTT 58.898 45.455 0.00 0.00 0.00 2.32
301 302 3.118884 CCAGAATCTTTGAGCCCCATTTG 60.119 47.826 0.00 0.00 0.00 2.32
302 303 3.512724 CAGAATCTTTGAGCCCCATTTGT 59.487 43.478 0.00 0.00 0.00 2.83
303 304 4.020839 CAGAATCTTTGAGCCCCATTTGTT 60.021 41.667 0.00 0.00 0.00 2.83
304 305 4.594491 AGAATCTTTGAGCCCCATTTGTTT 59.406 37.500 0.00 0.00 0.00 2.83
305 306 4.980339 ATCTTTGAGCCCCATTTGTTTT 57.020 36.364 0.00 0.00 0.00 2.43
306 307 6.269769 AGAATCTTTGAGCCCCATTTGTTTTA 59.730 34.615 0.00 0.00 0.00 1.52
307 308 5.208463 TCTTTGAGCCCCATTTGTTTTAC 57.792 39.130 0.00 0.00 0.00 2.01
308 309 4.651503 TCTTTGAGCCCCATTTGTTTTACA 59.348 37.500 0.00 0.00 0.00 2.41
309 310 5.129485 TCTTTGAGCCCCATTTGTTTTACAA 59.871 36.000 0.00 0.00 36.11 2.41
310 311 5.559148 TTGAGCCCCATTTGTTTTACAAT 57.441 34.783 0.00 0.00 38.00 2.71
311 312 5.559148 TGAGCCCCATTTGTTTTACAATT 57.441 34.783 0.00 0.00 38.00 2.32
312 313 5.546526 TGAGCCCCATTTGTTTTACAATTC 58.453 37.500 0.00 0.00 38.00 2.17
313 314 5.306678 TGAGCCCCATTTGTTTTACAATTCT 59.693 36.000 0.00 0.00 38.00 2.40
314 315 6.495181 TGAGCCCCATTTGTTTTACAATTCTA 59.505 34.615 0.00 0.00 38.00 2.10
315 316 7.180051 TGAGCCCCATTTGTTTTACAATTCTAT 59.820 33.333 0.00 0.00 38.00 1.98
316 317 7.555965 AGCCCCATTTGTTTTACAATTCTATC 58.444 34.615 0.00 0.00 38.00 2.08
317 318 7.400052 AGCCCCATTTGTTTTACAATTCTATCT 59.600 33.333 0.00 0.00 38.00 1.98
318 319 8.691797 GCCCCATTTGTTTTACAATTCTATCTA 58.308 33.333 0.00 0.00 38.00 1.98
356 357 9.408648 ACTAGATAGGATTGTAAAACAAATGGG 57.591 33.333 0.00 0.00 41.96 4.00
357 358 7.660030 AGATAGGATTGTAAAACAAATGGGG 57.340 36.000 0.00 0.00 41.96 4.96
358 359 4.551702 AGGATTGTAAAACAAATGGGGC 57.448 40.909 0.00 0.00 41.96 5.80
359 360 4.167319 AGGATTGTAAAACAAATGGGGCT 58.833 39.130 0.00 0.00 41.96 5.19
360 361 4.222810 AGGATTGTAAAACAAATGGGGCTC 59.777 41.667 0.00 0.00 41.96 4.70
361 362 4.020662 GGATTGTAAAACAAATGGGGCTCA 60.021 41.667 0.00 0.00 41.96 4.26
362 363 5.512232 GGATTGTAAAACAAATGGGGCTCAA 60.512 40.000 0.00 0.00 41.96 3.02
363 364 5.359194 TTGTAAAACAAATGGGGCTCAAA 57.641 34.783 0.00 0.00 34.76 2.69
364 365 4.954875 TGTAAAACAAATGGGGCTCAAAG 58.045 39.130 0.00 0.00 0.00 2.77
365 366 4.651503 TGTAAAACAAATGGGGCTCAAAGA 59.348 37.500 0.00 0.00 0.00 2.52
366 367 4.980339 AAAACAAATGGGGCTCAAAGAT 57.020 36.364 0.00 0.00 0.00 2.40
367 368 4.980339 AAACAAATGGGGCTCAAAGATT 57.020 36.364 0.00 0.00 0.00 2.40
368 369 4.541973 AACAAATGGGGCTCAAAGATTC 57.458 40.909 0.00 0.00 0.00 2.52
369 370 3.782992 ACAAATGGGGCTCAAAGATTCT 58.217 40.909 0.00 0.00 0.00 2.40
370 371 3.512724 ACAAATGGGGCTCAAAGATTCTG 59.487 43.478 0.00 0.00 0.00 3.02
371 372 2.449137 ATGGGGCTCAAAGATTCTGG 57.551 50.000 0.00 0.00 0.00 3.86
372 373 0.332632 TGGGGCTCAAAGATTCTGGG 59.667 55.000 0.00 0.00 0.00 4.45
373 374 0.625849 GGGGCTCAAAGATTCTGGGA 59.374 55.000 0.00 0.00 0.00 4.37
374 375 1.409381 GGGGCTCAAAGATTCTGGGAG 60.409 57.143 9.42 9.42 0.00 4.30
375 376 1.561542 GGGCTCAAAGATTCTGGGAGA 59.438 52.381 15.41 0.14 0.00 3.71
376 377 2.025887 GGGCTCAAAGATTCTGGGAGAA 60.026 50.000 15.41 0.00 38.78 2.87
377 378 3.277715 GGCTCAAAGATTCTGGGAGAAG 58.722 50.000 15.41 0.00 37.69 2.85
378 379 2.682352 GCTCAAAGATTCTGGGAGAAGC 59.318 50.000 15.41 0.00 40.68 3.86
382 383 3.796764 GATTCTGGGAGAAGCTGGG 57.203 57.895 0.00 0.00 37.62 4.45
383 384 0.915364 GATTCTGGGAGAAGCTGGGT 59.085 55.000 0.00 0.00 37.62 4.51
384 385 2.119495 GATTCTGGGAGAAGCTGGGTA 58.881 52.381 0.00 0.00 37.62 3.69
385 386 1.573108 TTCTGGGAGAAGCTGGGTAG 58.427 55.000 0.00 0.00 29.50 3.18
386 387 0.325671 TCTGGGAGAAGCTGGGTAGG 60.326 60.000 0.00 0.00 0.00 3.18
387 388 1.306997 TGGGAGAAGCTGGGTAGGG 60.307 63.158 0.00 0.00 0.00 3.53
388 389 2.073101 GGGAGAAGCTGGGTAGGGG 61.073 68.421 0.00 0.00 0.00 4.79
389 390 1.307084 GGAGAAGCTGGGTAGGGGT 60.307 63.158 0.00 0.00 0.00 4.95
390 391 1.338890 GGAGAAGCTGGGTAGGGGTC 61.339 65.000 0.00 0.00 0.00 4.46
391 392 1.677637 GAGAAGCTGGGTAGGGGTCG 61.678 65.000 0.00 0.00 0.00 4.79
392 393 2.687566 AAGCTGGGTAGGGGTCGG 60.688 66.667 0.00 0.00 0.00 4.79
393 394 3.248248 AAGCTGGGTAGGGGTCGGA 62.248 63.158 0.00 0.00 0.00 4.55
394 395 2.446036 GCTGGGTAGGGGTCGGAT 60.446 66.667 0.00 0.00 0.00 4.18
395 396 2.070650 GCTGGGTAGGGGTCGGATT 61.071 63.158 0.00 0.00 0.00 3.01
396 397 1.632965 GCTGGGTAGGGGTCGGATTT 61.633 60.000 0.00 0.00 0.00 2.17
397 398 0.916809 CTGGGTAGGGGTCGGATTTT 59.083 55.000 0.00 0.00 0.00 1.82
398 399 0.621609 TGGGTAGGGGTCGGATTTTG 59.378 55.000 0.00 0.00 0.00 2.44
399 400 0.106868 GGGTAGGGGTCGGATTTTGG 60.107 60.000 0.00 0.00 0.00 3.28
400 401 0.106868 GGTAGGGGTCGGATTTTGGG 60.107 60.000 0.00 0.00 0.00 4.12
401 402 0.913924 GTAGGGGTCGGATTTTGGGA 59.086 55.000 0.00 0.00 0.00 4.37
402 403 1.134189 GTAGGGGTCGGATTTTGGGAG 60.134 57.143 0.00 0.00 0.00 4.30
403 404 0.549169 AGGGGTCGGATTTTGGGAGA 60.549 55.000 0.00 0.00 0.00 3.71
404 405 0.330267 GGGGTCGGATTTTGGGAGAA 59.670 55.000 0.00 0.00 0.00 2.87
405 406 1.063942 GGGGTCGGATTTTGGGAGAAT 60.064 52.381 0.00 0.00 0.00 2.40
406 407 2.298610 GGGTCGGATTTTGGGAGAATC 58.701 52.381 0.00 0.00 33.71 2.52
429 430 4.170292 CCAGATTCTGGCAAAAGAACTG 57.830 45.455 19.49 12.95 45.13 3.16
430 431 3.571401 CCAGATTCTGGCAAAAGAACTGT 59.429 43.478 19.49 0.00 45.13 3.55
431 432 4.543692 CAGATTCTGGCAAAAGAACTGTG 58.456 43.478 5.73 0.00 38.95 3.66
432 433 2.869233 TTCTGGCAAAAGAACTGTGC 57.131 45.000 0.00 0.00 37.55 4.57
450 451 3.055819 TGTGCCTAGATCTCACTGAAACC 60.056 47.826 12.69 0.00 0.00 3.27
452 453 2.815478 CCTAGATCTCACTGAAACCGC 58.185 52.381 0.00 0.00 0.00 5.68
454 455 0.976641 AGATCTCACTGAAACCGCCA 59.023 50.000 0.00 0.00 0.00 5.69
457 458 2.281484 TCACTGAAACCGCCAGGC 60.281 61.111 0.00 0.00 42.76 4.85
479 480 1.537889 ATCTGGGGTGGTCGTCCAA 60.538 57.895 2.02 0.00 46.15 3.53
485 486 1.192428 GGGTGGTCGTCCAATACTCT 58.808 55.000 2.02 0.00 46.15 3.24
489 490 3.556423 GGTGGTCGTCCAATACTCTTTGT 60.556 47.826 2.02 0.00 46.15 2.83
502 503 2.989840 ACTCTTTGTCGCATTCTTCTCG 59.010 45.455 0.00 0.00 0.00 4.04
546 547 4.798288 CGACCGACGGCTTTCATA 57.202 55.556 15.39 0.00 38.46 2.15
552 554 1.065358 CGACGGCTTTCATACGTTGT 58.935 50.000 0.00 0.00 41.40 3.32
558 560 3.303461 CGGCTTTCATACGTTGTGTCAAA 60.303 43.478 0.00 0.00 0.00 2.69
566 568 2.853963 ACGTTGTGTCAAAACCGTTTC 58.146 42.857 0.07 0.00 0.00 2.78
577 579 2.816520 CCGTTTCCCTTACCGCGG 60.817 66.667 26.86 26.86 0.00 6.46
610 612 1.146566 GATCCAGAGGGCCCATTGAAT 59.853 52.381 27.56 11.22 0.00 2.57
613 615 2.190538 CCAGAGGGCCCATTGAATTTT 58.809 47.619 27.56 0.00 0.00 1.82
626 628 2.507322 GAATTTTGCTCACGGCGCGA 62.507 55.000 12.10 0.62 45.43 5.87
627 629 1.922135 AATTTTGCTCACGGCGCGAT 61.922 50.000 12.10 0.00 45.43 4.58
670 909 0.442699 GTCGTCGGTTTCTCCAATGC 59.557 55.000 0.00 0.00 35.57 3.56
671 910 0.034198 TCGTCGGTTTCTCCAATGCA 59.966 50.000 0.00 0.00 35.57 3.96
672 911 0.871722 CGTCGGTTTCTCCAATGCAA 59.128 50.000 0.00 0.00 35.57 4.08
749 1007 7.408132 TCTTGTAAAGTTGATCGACTTGAAG 57.592 36.000 25.78 23.86 46.34 3.02
787 1051 2.815298 CGCGTCTCTCCTCGTCCTC 61.815 68.421 0.00 0.00 0.00 3.71
799 1063 2.572284 GTCCTCTCGTTGTCCCGG 59.428 66.667 0.00 0.00 0.00 5.73
819 1083 3.003480 GGATCCAAAGTCGAGTCCAAAG 58.997 50.000 6.95 0.00 0.00 2.77
822 1086 0.875059 CAAAGTCGAGTCCAAAGCCC 59.125 55.000 0.00 0.00 0.00 5.19
823 1087 0.472471 AAAGTCGAGTCCAAAGCCCA 59.528 50.000 0.00 0.00 0.00 5.36
824 1088 0.472471 AAGTCGAGTCCAAAGCCCAA 59.528 50.000 0.00 0.00 0.00 4.12
825 1089 0.472471 AGTCGAGTCCAAAGCCCAAA 59.528 50.000 0.00 0.00 0.00 3.28
828 1092 0.310854 CGAGTCCAAAGCCCAAACAC 59.689 55.000 0.00 0.00 0.00 3.32
829 1093 1.692411 GAGTCCAAAGCCCAAACACT 58.308 50.000 0.00 0.00 0.00 3.55
830 1094 1.338020 GAGTCCAAAGCCCAAACACTG 59.662 52.381 0.00 0.00 0.00 3.66
831 1095 1.111277 GTCCAAAGCCCAAACACTGT 58.889 50.000 0.00 0.00 0.00 3.55
833 1097 0.389025 CCAAAGCCCAAACACTGTCC 59.611 55.000 0.00 0.00 0.00 4.02
837 1101 2.113139 CCCAAACACTGTCCCGCT 59.887 61.111 0.00 0.00 0.00 5.52
838 1102 1.373435 CCCAAACACTGTCCCGCTA 59.627 57.895 0.00 0.00 0.00 4.26
839 1103 0.953960 CCCAAACACTGTCCCGCTAC 60.954 60.000 0.00 0.00 0.00 3.58
840 1104 0.250124 CCAAACACTGTCCCGCTACA 60.250 55.000 0.00 0.00 0.00 2.74
841 1105 1.588674 CAAACACTGTCCCGCTACAA 58.411 50.000 0.00 0.00 0.00 2.41
842 1106 1.263217 CAAACACTGTCCCGCTACAAC 59.737 52.381 0.00 0.00 0.00 3.32
845 1109 2.267961 CTGTCCCGCTACAACCCC 59.732 66.667 0.00 0.00 0.00 4.95
846 1110 2.527123 TGTCCCGCTACAACCCCA 60.527 61.111 0.00 0.00 0.00 4.96
847 1111 2.119484 CTGTCCCGCTACAACCCCAA 62.119 60.000 0.00 0.00 0.00 4.12
849 1113 0.537828 GTCCCGCTACAACCCCAAAA 60.538 55.000 0.00 0.00 0.00 2.44
850 1114 0.406361 TCCCGCTACAACCCCAAAAT 59.594 50.000 0.00 0.00 0.00 1.82
876 1152 3.361977 CCTTCCCGCCAACCAACG 61.362 66.667 0.00 0.00 0.00 4.10
958 1246 4.352039 CTCATACATACGCCGATATCCAC 58.648 47.826 0.00 0.00 0.00 4.02
1011 1299 4.292178 CGAGATCTCTGCCCGCCC 62.292 72.222 20.26 0.00 0.00 6.13
1012 1300 4.292178 GAGATCTCTGCCCGCCCG 62.292 72.222 15.80 0.00 0.00 6.13
1134 1436 2.440817 CCTCGATTTACCCGGGGCT 61.441 63.158 27.92 7.25 41.13 5.19
1135 1437 1.117142 CCTCGATTTACCCGGGGCTA 61.117 60.000 27.92 9.54 41.13 3.93
1136 1438 0.317479 CTCGATTTACCCGGGGCTAG 59.683 60.000 27.92 11.02 0.00 3.42
1137 1439 1.117142 TCGATTTACCCGGGGCTAGG 61.117 60.000 27.92 9.48 0.00 3.02
1147 1449 4.554036 GGGCTAGGGCGGCTTCAG 62.554 72.222 9.56 4.78 39.81 3.02
1148 1450 4.554036 GGCTAGGGCGGCTTCAGG 62.554 72.222 9.56 0.00 39.81 3.86
1149 1451 4.554036 GCTAGGGCGGCTTCAGGG 62.554 72.222 9.56 0.00 0.00 4.45
1150 1452 4.554036 CTAGGGCGGCTTCAGGGC 62.554 72.222 9.56 0.00 37.12 5.19
1179 1481 3.403558 GCTCCCTCCGCCCTTCTT 61.404 66.667 0.00 0.00 0.00 2.52
1180 1482 2.904131 CTCCCTCCGCCCTTCTTC 59.096 66.667 0.00 0.00 0.00 2.87
1181 1483 1.990060 CTCCCTCCGCCCTTCTTCA 60.990 63.158 0.00 0.00 0.00 3.02
1182 1484 1.965754 CTCCCTCCGCCCTTCTTCAG 61.966 65.000 0.00 0.00 0.00 3.02
1183 1485 2.124942 CCTCCGCCCTTCTTCAGC 60.125 66.667 0.00 0.00 0.00 4.26
1184 1486 2.124942 CTCCGCCCTTCTTCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
1185 1487 3.689002 CTCCGCCCTTCTTCAGCCC 62.689 68.421 0.00 0.00 0.00 5.19
1186 1488 4.803908 CCGCCCTTCTTCAGCCCC 62.804 72.222 0.00 0.00 0.00 5.80
1187 1489 3.721706 CGCCCTTCTTCAGCCCCT 61.722 66.667 0.00 0.00 0.00 4.79
1188 1490 2.273776 GCCCTTCTTCAGCCCCTC 59.726 66.667 0.00 0.00 0.00 4.30
1189 1491 3.002371 CCCTTCTTCAGCCCCTCC 58.998 66.667 0.00 0.00 0.00 4.30
1190 1492 2.586792 CCTTCTTCAGCCCCTCCG 59.413 66.667 0.00 0.00 0.00 4.63
1258 1560 1.000607 CCTCTTTGAGTTCGACACCGA 60.001 52.381 0.00 0.00 43.96 4.69
1261 1563 0.748450 TTTGAGTTCGACACCGACCT 59.252 50.000 0.00 0.00 45.50 3.85
1287 1593 2.352388 CGGCTTTTCCTCGATTTACCA 58.648 47.619 0.00 0.00 0.00 3.25
1293 1599 0.326238 TCCTCGATTTACCAGGGGCT 60.326 55.000 0.00 0.00 0.00 5.19
1338 1651 6.258947 GCAGGGTCTAGATCTGTGTTTATTTC 59.741 42.308 20.15 4.46 0.00 2.17
1339 1652 6.763610 CAGGGTCTAGATCTGTGTTTATTTCC 59.236 42.308 5.18 0.00 0.00 3.13
1340 1653 5.753921 GGGTCTAGATCTGTGTTTATTTCCG 59.246 44.000 5.18 0.00 0.00 4.30
1341 1654 5.234543 GGTCTAGATCTGTGTTTATTTCCGC 59.765 44.000 5.18 0.00 0.00 5.54
1342 1655 5.810587 GTCTAGATCTGTGTTTATTTCCGCA 59.189 40.000 5.18 0.00 0.00 5.69
1343 1656 6.480320 GTCTAGATCTGTGTTTATTTCCGCAT 59.520 38.462 5.18 0.00 0.00 4.73
1344 1657 7.652105 GTCTAGATCTGTGTTTATTTCCGCATA 59.348 37.037 5.18 0.00 0.00 3.14
1346 1659 4.850859 TCTGTGTTTATTTCCGCATACG 57.149 40.909 0.00 0.00 39.67 3.06
1370 1687 6.166279 GGTATCCGAGCTGATGAAATGAATA 58.834 40.000 0.00 0.00 0.00 1.75
1374 1691 6.216569 TCCGAGCTGATGAAATGAATACTAC 58.783 40.000 0.00 0.00 0.00 2.73
1379 1698 6.642950 AGCTGATGAAATGAATACTACGTAGC 59.357 38.462 22.40 6.74 0.00 3.58
1416 1741 0.174162 GTGTTGAATCTGCCATGGCC 59.826 55.000 33.44 18.08 41.09 5.36
1432 1757 1.271379 TGGCCAGGACTCTTGTAAAGC 60.271 52.381 0.00 0.00 45.70 3.51
1467 1794 1.590932 CTAGTAGCGTTCTAGGCCGA 58.409 55.000 0.00 0.00 33.40 5.54
1470 1797 0.666913 GTAGCGTTCTAGGCCGATGA 59.333 55.000 0.00 0.00 0.00 2.92
1472 1799 0.752009 AGCGTTCTAGGCCGATGAGA 60.752 55.000 0.00 0.00 0.00 3.27
1518 1845 0.174617 GAGGCGCAGTTCTTAGCTCT 59.825 55.000 10.83 0.00 0.00 4.09
1545 1874 1.534729 GGCTTGTTGAGGGATTCGTT 58.465 50.000 0.00 0.00 0.00 3.85
1550 1879 5.355910 GGCTTGTTGAGGGATTCGTTATTAA 59.644 40.000 0.00 0.00 0.00 1.40
1552 1881 7.416326 GGCTTGTTGAGGGATTCGTTATTAATT 60.416 37.037 0.00 0.00 0.00 1.40
1553 1882 7.973944 GCTTGTTGAGGGATTCGTTATTAATTT 59.026 33.333 0.00 0.00 0.00 1.82
1600 1929 6.494491 TGAAGATTGATGACAAATTTGAGGGT 59.506 34.615 24.64 1.64 39.54 4.34
1605 1934 6.729690 TGATGACAAATTTGAGGGTTTTCT 57.270 33.333 24.64 0.00 0.00 2.52
1629 1958 0.830023 TGACGACCACAGGGATGTGA 60.830 55.000 9.86 0.00 42.02 3.58
1634 1963 2.420022 CGACCACAGGGATGTGATTTTC 59.580 50.000 9.86 0.93 42.02 2.29
1687 2019 7.201644 CGTCTCTATACAAATTGCCTGTTCAAT 60.202 37.037 0.00 0.00 38.23 2.57
1693 2025 5.673514 ACAAATTGCCTGTTCAATGTTCTT 58.326 33.333 0.00 0.00 36.83 2.52
1694 2026 5.754890 ACAAATTGCCTGTTCAATGTTCTTC 59.245 36.000 0.00 0.00 36.83 2.87
1697 2029 4.771590 TGCCTGTTCAATGTTCTTCATC 57.228 40.909 0.00 0.00 35.48 2.92
1702 2034 5.163581 CCTGTTCAATGTTCTTCATCCATCC 60.164 44.000 0.00 0.00 35.48 3.51
1851 2450 6.037098 GCTCTGTTATGAAGAATACACGAGT 58.963 40.000 0.00 0.00 0.00 4.18
1902 2516 9.546428 TTCTTCGAAGATGCTTTCATGAATATA 57.454 29.630 27.51 4.50 35.04 0.86
1903 2517 9.201127 TCTTCGAAGATGCTTTCATGAATATAG 57.799 33.333 23.74 5.10 35.04 1.31
1904 2518 7.895975 TCGAAGATGCTTTCATGAATATAGG 57.104 36.000 9.40 0.00 31.96 2.57
1905 2519 6.875726 TCGAAGATGCTTTCATGAATATAGGG 59.124 38.462 9.40 0.00 31.96 3.53
1906 2520 6.875726 CGAAGATGCTTTCATGAATATAGGGA 59.124 38.462 9.40 0.00 31.96 4.20
1907 2521 7.551974 CGAAGATGCTTTCATGAATATAGGGAT 59.448 37.037 9.40 4.60 31.96 3.85
1908 2522 8.804912 AAGATGCTTTCATGAATATAGGGATC 57.195 34.615 9.40 12.30 31.96 3.36
1909 2523 7.344913 AGATGCTTTCATGAATATAGGGATCC 58.655 38.462 9.40 1.92 31.96 3.36
1910 2524 5.819991 TGCTTTCATGAATATAGGGATCCC 58.180 41.667 24.59 24.59 0.00 3.85
1911 2525 5.312974 TGCTTTCATGAATATAGGGATCCCA 59.687 40.000 32.69 18.54 38.92 4.37
1912 2526 6.011362 TGCTTTCATGAATATAGGGATCCCAT 60.011 38.462 32.69 23.54 38.92 4.00
1913 2527 7.184387 TGCTTTCATGAATATAGGGATCCCATA 59.816 37.037 32.69 24.76 38.92 2.74
1914 2528 8.223330 GCTTTCATGAATATAGGGATCCCATAT 58.777 37.037 32.69 25.68 38.92 1.78
2061 2681 6.238593 GCTTCCCTGAATAGATTTTGCTACAG 60.239 42.308 0.00 0.00 0.00 2.74
2080 2700 3.201290 CAGATAAGGCGCTCAATCAGTT 58.799 45.455 7.64 0.00 0.00 3.16
2230 2853 3.253432 CCAGTTTAAAGCCTGTCAAGACC 59.747 47.826 5.41 0.00 0.00 3.85
2254 2910 7.226325 ACCGAGATGATTGATTCTGAAGAATTC 59.774 37.037 6.98 0.00 44.14 2.17
2297 3010 0.249405 CAAGGATCTCAGAGCTCGGC 60.249 60.000 9.22 0.00 0.00 5.54
2350 3063 5.189180 ACTATTTCTGAAGAATCTGGCACC 58.811 41.667 0.00 0.00 33.54 5.01
2359 3072 4.038271 AGAATCTGGCACCAAGAATCAA 57.962 40.909 0.00 0.00 0.00 2.57
2397 3110 4.868172 TTGGGGATGAAAGATCAGATGT 57.132 40.909 0.00 0.00 39.39 3.06
2440 3153 5.631096 GCCTCTTATTGCTTTGAAACAGAAC 59.369 40.000 0.00 0.00 0.00 3.01
2470 3183 5.959618 AGATACCACCTTGTAAAGCAAAC 57.040 39.130 0.00 0.00 44.44 2.93
2480 3193 6.321181 ACCTTGTAAAGCAAACAGAAAGATGA 59.679 34.615 0.00 0.00 44.44 2.92
2533 3246 3.129287 CAGTTGATACATCACCAAAGGGC 59.871 47.826 0.00 0.00 36.36 5.19
2774 3490 7.736447 TTTTTCTTGAAGCAAACCTTTTTGA 57.264 28.000 1.29 0.00 44.38 2.69
2797 3513 6.178607 AGGATCCTTTTTGCATCAAAACTT 57.821 33.333 9.02 0.00 42.02 2.66
2802 3518 8.907222 ATCCTTTTTGCATCAAAACTTACAAT 57.093 26.923 4.42 0.00 42.02 2.71
2839 3561 7.989826 ACTGGCAGAACATAATGAAGAAATAC 58.010 34.615 23.66 0.00 0.00 1.89
2880 3602 4.165779 GTGCCGAAATGGAAAATACAGTG 58.834 43.478 0.00 0.00 42.00 3.66
2960 3682 1.968540 GTGGACAGCAGCCTGGTTC 60.969 63.158 0.00 0.00 43.53 3.62
2971 3693 0.967380 GCCTGGTTCCATCACCCAAG 60.967 60.000 0.00 0.00 35.73 3.61
3002 3724 2.037772 AGGATGTTTCTGACGCTGAAGT 59.962 45.455 0.00 0.00 0.00 3.01
3057 3779 8.186709 AGATGGATCACAATTTTTCTTCACTT 57.813 30.769 0.00 0.00 0.00 3.16
3134 3856 6.974932 TTCAGATGTGAATAAGTCTTCTGC 57.025 37.500 0.23 0.00 37.79 4.26
3144 3866 3.795688 AAGTCTTCTGCTGGGAATGAA 57.204 42.857 0.00 0.00 0.00 2.57
3145 3867 3.064900 AGTCTTCTGCTGGGAATGAAC 57.935 47.619 0.00 0.00 0.00 3.18
3177 3899 6.759356 TGTCTTCTGTTAATCGTTCTTGTGAA 59.241 34.615 0.00 0.00 0.00 3.18
3271 3993 5.310409 TGTGGAAGAGTCTTCTCCAATTT 57.690 39.130 27.68 0.00 41.26 1.82
3402 4124 3.054875 TGGAGGGTCAATCAGATTCACTG 60.055 47.826 0.00 0.00 46.97 3.66
3631 4353 5.147330 TGTAGTTCCAGATACTGTTGTGG 57.853 43.478 0.00 0.00 0.00 4.17
3833 4555 4.064388 GCTTGTGTTAACATGGGCAAAAT 58.936 39.130 12.26 0.00 35.83 1.82
3928 4650 1.225704 CCATCCTGCCTGGGAACTC 59.774 63.158 0.00 0.00 39.02 3.01
3932 4654 1.751927 CCTGCCTGGGAACTCATGC 60.752 63.158 0.00 0.00 0.00 4.06
4082 4804 7.870588 ACGAGTTTCTCATCTTTTACACTAC 57.129 36.000 0.00 0.00 0.00 2.73
4085 4807 7.317722 AGTTTCTCATCTTTTACACTACCCT 57.682 36.000 0.00 0.00 0.00 4.34
4630 5419 0.941542 TTTACTGCTGTGCAACCGAC 59.058 50.000 6.48 0.00 38.41 4.79
4759 5550 9.931210 CGTTTCTCTAATTTTGTTTCTGTTAGT 57.069 29.630 0.00 0.00 0.00 2.24
4821 5615 9.521841 CTCCTTCCATTACTAGTACTATGATGA 57.478 37.037 13.83 3.80 0.00 2.92
4890 5685 8.903570 TTACTATTGATTTACATTTGCGGTTG 57.096 30.769 0.00 0.00 0.00 3.77
4963 5789 9.638239 ATTATTGGTGTACTTAAATGTGCTTTG 57.362 29.630 0.00 0.00 0.00 2.77
5280 6187 7.015877 GCTTGTTTAATAGTACTGCAGTGTTC 58.984 38.462 29.57 18.09 0.00 3.18
5337 6244 9.780186 GCTCACCACTACTAAAATCCTAATTAT 57.220 33.333 0.00 0.00 0.00 1.28
5503 6413 6.038161 CAGGGCGAGTTATGAACATTATTTGA 59.962 38.462 0.00 0.00 0.00 2.69
5504 6414 6.601613 AGGGCGAGTTATGAACATTATTTGAA 59.398 34.615 0.00 0.00 0.00 2.69
5532 6442 3.945179 GCGTCAGGCAATTCTTTCATAG 58.055 45.455 0.00 0.00 42.87 2.23
5576 6487 0.251742 TCAAACAAGATGGCCCTGGG 60.252 55.000 8.86 8.86 0.00 4.45
5640 6558 2.356330 CCAAGTAACGGGGGAATGCTTA 60.356 50.000 0.00 0.00 0.00 3.09
5641 6559 3.551846 CAAGTAACGGGGGAATGCTTAT 58.448 45.455 0.00 0.00 0.00 1.73
5642 6560 3.208747 AGTAACGGGGGAATGCTTATG 57.791 47.619 0.00 0.00 0.00 1.90
5643 6561 2.508300 AGTAACGGGGGAATGCTTATGT 59.492 45.455 0.00 0.00 0.00 2.29
5702 6625 7.254252 GCAGTGTATGTTTAGATGCTTAGAGTG 60.254 40.741 0.00 0.00 0.00 3.51
5756 6679 5.008613 TCAGAATGCCACTTGTTGTAGTTTC 59.991 40.000 0.00 0.00 34.76 2.78
5848 6771 0.394899 GGGCTTGTGGATTCCTCTGG 60.395 60.000 3.95 0.00 0.00 3.86
5986 6914 6.599356 AGTTGTCAGGTGTACATATGTGTA 57.401 37.500 18.81 4.25 39.77 2.90
5996 6924 8.696374 AGGTGTACATATGTGTATATCCATAGC 58.304 37.037 18.81 4.00 42.43 2.97
6090 7482 1.997606 CTGCCAAAATTTAGCTGCTGC 59.002 47.619 13.43 7.62 40.05 5.25
6099 7491 1.807139 TTAGCTGCTGCGTTGATCAA 58.193 45.000 13.43 3.38 45.42 2.57
6101 7493 0.886043 AGCTGCTGCGTTGATCAACA 60.886 50.000 32.06 16.85 45.42 3.33
6102 7494 0.453950 GCTGCTGCGTTGATCAACAG 60.454 55.000 32.06 24.56 41.20 3.16
6103 7495 1.150827 CTGCTGCGTTGATCAACAGA 58.849 50.000 32.06 19.30 41.20 3.41
6104 7496 1.532437 CTGCTGCGTTGATCAACAGAA 59.468 47.619 32.06 19.44 41.20 3.02
6105 7497 1.946081 TGCTGCGTTGATCAACAGAAA 59.054 42.857 32.06 16.31 41.20 2.52
6106 7498 2.286950 TGCTGCGTTGATCAACAGAAAC 60.287 45.455 32.06 19.46 41.20 2.78
6107 7499 2.286950 GCTGCGTTGATCAACAGAAACA 60.287 45.455 32.06 21.06 41.20 2.83
6108 7500 3.548587 CTGCGTTGATCAACAGAAACAG 58.451 45.455 32.06 24.81 41.20 3.16
6109 7501 3.202097 TGCGTTGATCAACAGAAACAGA 58.798 40.909 32.06 8.55 41.20 3.41
6111 7503 3.248602 GCGTTGATCAACAGAAACAGAGT 59.751 43.478 32.06 0.00 41.20 3.24
6112 7504 4.260784 GCGTTGATCAACAGAAACAGAGTT 60.261 41.667 32.06 0.00 41.20 3.01
6113 7505 5.050363 GCGTTGATCAACAGAAACAGAGTTA 60.050 40.000 32.06 0.00 41.20 2.24
6114 7506 6.511121 GCGTTGATCAACAGAAACAGAGTTAA 60.511 38.462 32.06 0.00 41.20 2.01
6115 7507 7.576236 CGTTGATCAACAGAAACAGAGTTAAT 58.424 34.615 32.06 0.00 41.20 1.40
6117 7509 8.345565 GTTGATCAACAGAAACAGAGTTAATGT 58.654 33.333 29.43 0.00 40.84 2.71
6118 7510 8.450578 TGATCAACAGAAACAGAGTTAATGTT 57.549 30.769 0.00 6.75 42.55 2.71
6119 7511 9.554395 TGATCAACAGAAACAGAGTTAATGTTA 57.446 29.630 0.00 3.85 39.91 2.41
6122 7514 6.467723 ACAGAAACAGAGTTAATGTTAGCG 57.532 37.500 0.00 0.00 39.91 4.26
6124 7516 4.392138 AGAAACAGAGTTAATGTTAGCGGC 59.608 41.667 0.00 0.00 39.91 6.53
6125 7517 3.611766 ACAGAGTTAATGTTAGCGGCT 57.388 42.857 7.98 7.98 0.00 5.52
6130 7979 5.065218 CAGAGTTAATGTTAGCGGCTTCATT 59.935 40.000 24.81 24.81 35.24 2.57
6134 7983 2.394930 TGTTAGCGGCTTCATTGCTA 57.605 45.000 8.26 0.00 40.06 3.49
6141 7990 2.831333 CGGCTTCATTGCTATCACTCT 58.169 47.619 0.00 0.00 0.00 3.24
6156 8005 3.159472 TCACTCTGCCTTCATTTTGCAT 58.841 40.909 0.00 0.00 33.97 3.96
6162 8011 4.039488 TCTGCCTTCATTTTGCATTCTTGT 59.961 37.500 0.00 0.00 33.97 3.16
6167 8016 4.587584 TCATTTTGCATTCTTGTGAGCA 57.412 36.364 0.00 0.00 34.79 4.26
6269 8139 6.767524 AATCTGTACTGAGTGGACTCTTAG 57.232 41.667 8.50 1.15 43.25 2.18
6293 8168 7.206687 AGAGAACTGGAAGATCGATGATTTAC 58.793 38.462 0.54 0.00 41.16 2.01
6476 8366 8.706936 CATTTTGATAGATGATGAAGACCTACG 58.293 37.037 0.00 0.00 0.00 3.51
6507 8397 7.013083 GTGATTGAAGCTGAAGAATATGGACAT 59.987 37.037 0.00 0.00 0.00 3.06
6509 8399 6.688637 TGAAGCTGAAGAATATGGACATTG 57.311 37.500 0.00 0.00 0.00 2.82
6529 8435 2.225242 TGTTATGGTGACCAAGGCCAAT 60.225 45.455 9.06 0.00 36.95 3.16
6530 8436 2.142356 TATGGTGACCAAGGCCAATG 57.858 50.000 9.06 3.01 36.95 2.82
6535 8446 0.478072 TGACCAAGGCCAATGACACT 59.522 50.000 5.01 0.00 0.00 3.55
6585 8588 4.799715 ACTACCTAGCTGACTCCATACT 57.200 45.455 0.00 0.00 0.00 2.12
6696 8718 3.963383 TGACCTTTTGCTTCTTCGAAC 57.037 42.857 0.00 0.00 0.00 3.95
6711 8733 0.318360 CGAACGCCCCTTGTTTTTCC 60.318 55.000 0.00 0.00 0.00 3.13
6755 8779 2.673368 CAGACCCTTTATGTCGCTTGTC 59.327 50.000 0.00 0.00 37.80 3.18
6809 8842 7.985184 AGAAAACATGAAGCGGATTAGTATACA 59.015 33.333 5.50 0.00 0.00 2.29
6838 8871 8.702163 AGGTCAAAATTTAAACTTCACAACTG 57.298 30.769 0.00 0.00 0.00 3.16
6907 8953 3.508840 CCCCGCTTGCCGTCAATC 61.509 66.667 0.00 0.00 34.38 2.67
6912 8958 0.521867 CGCTTGCCGTCAATCACATG 60.522 55.000 0.00 0.00 0.00 3.21
6945 8991 7.439204 CATTTTTCACCTGCAAAAATGTTTG 57.561 32.000 18.88 3.80 46.69 2.93
6946 8992 6.566197 TTTTTCACCTGCAAAAATGTTTGT 57.434 29.167 10.07 0.00 45.06 2.83
6947 8993 6.566197 TTTTCACCTGCAAAAATGTTTGTT 57.434 29.167 10.07 0.00 45.06 2.83
6960 9006 9.913451 CAAAAATGTTTGTTAATGTAGTTGTGG 57.087 29.630 0.00 0.00 39.49 4.17
6983 9029 8.051901 TGGATACATACTGATATACCAGTTCG 57.948 38.462 4.71 0.00 43.14 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.064946 CCTCCTCTGCGATGTCGAC 59.935 63.158 9.11 9.11 43.02 4.20
22 23 4.500545 CGAACAATCTCATACCCTCCTCTG 60.501 50.000 0.00 0.00 0.00 3.35
36 37 2.550830 AAGCAGTGACCGAACAATCT 57.449 45.000 0.00 0.00 0.00 2.40
49 50 1.477558 CCACCACTCCAGAAAAGCAGT 60.478 52.381 0.00 0.00 0.00 4.40
52 53 1.239347 GTCCACCACTCCAGAAAAGC 58.761 55.000 0.00 0.00 0.00 3.51
74 75 1.805286 CGTGACACGAAAACACAACC 58.195 50.000 23.39 0.00 46.05 3.77
104 105 2.225255 GTCTGCTCAGCCAAAAGACTTC 59.775 50.000 7.46 0.00 35.47 3.01
108 109 0.392706 TCGTCTGCTCAGCCAAAAGA 59.607 50.000 0.00 0.00 0.00 2.52
112 113 2.049156 CGTCGTCTGCTCAGCCAA 60.049 61.111 0.00 0.00 0.00 4.52
128 129 3.110178 GAGGCCCACGAAACGACG 61.110 66.667 0.00 0.00 39.31 5.12
146 147 1.193426 GTCAAGTCGCAGAAGCAGAAC 59.807 52.381 0.00 0.00 39.69 3.01
157 158 0.949105 AACATCACCGGTCAAGTCGC 60.949 55.000 2.59 0.00 0.00 5.19
158 159 1.068474 GAACATCACCGGTCAAGTCG 58.932 55.000 2.59 0.00 0.00 4.18
161 162 1.535462 GGTTGAACATCACCGGTCAAG 59.465 52.381 2.59 0.00 0.00 3.02
166 167 1.604604 AACAGGTTGAACATCACCGG 58.395 50.000 0.00 0.00 0.00 5.28
167 168 3.315191 AGAAAACAGGTTGAACATCACCG 59.685 43.478 0.00 0.00 0.00 4.94
173 174 3.698539 TGATGCAGAAAACAGGTTGAACA 59.301 39.130 0.00 0.00 0.00 3.18
175 176 3.953612 AGTGATGCAGAAAACAGGTTGAA 59.046 39.130 0.00 0.00 0.00 2.69
179 180 3.560025 CCCTAGTGATGCAGAAAACAGGT 60.560 47.826 0.00 0.00 0.00 4.00
181 182 3.937706 CTCCCTAGTGATGCAGAAAACAG 59.062 47.826 0.00 0.00 0.00 3.16
205 206 3.006728 TGGGCCCTAACCTCACGG 61.007 66.667 25.70 0.00 0.00 4.94
206 207 1.838073 AACTGGGCCCTAACCTCACG 61.838 60.000 25.70 2.39 0.00 4.35
216 217 1.820010 CTGGCAAAAGAACTGGGCCC 61.820 60.000 17.59 17.59 43.96 5.80
217 218 0.827507 TCTGGCAAAAGAACTGGGCC 60.828 55.000 0.00 0.00 44.82 5.80
218 219 1.039856 TTCTGGCAAAAGAACTGGGC 58.960 50.000 0.00 0.00 31.19 5.36
219 220 3.057033 CAGATTCTGGCAAAAGAACTGGG 60.057 47.826 5.73 0.00 38.95 4.45
220 221 3.057033 CCAGATTCTGGCAAAAGAACTGG 60.057 47.826 19.49 18.64 45.13 4.00
221 222 4.170292 CCAGATTCTGGCAAAAGAACTG 57.830 45.455 19.49 12.95 45.13 3.16
243 244 2.027100 GGGTCGGATTCTGGGATAATCC 60.027 54.545 5.01 5.01 46.01 3.01
244 245 2.027100 GGGGTCGGATTCTGGGATAATC 60.027 54.545 0.00 0.00 33.44 1.75
245 246 1.985895 GGGGTCGGATTCTGGGATAAT 59.014 52.381 0.00 0.00 0.00 1.28
246 247 1.061657 AGGGGTCGGATTCTGGGATAA 60.062 52.381 0.00 0.00 0.00 1.75
247 248 0.566176 AGGGGTCGGATTCTGGGATA 59.434 55.000 0.00 0.00 0.00 2.59
248 249 0.566176 TAGGGGTCGGATTCTGGGAT 59.434 55.000 0.00 0.00 0.00 3.85
249 250 0.566176 ATAGGGGTCGGATTCTGGGA 59.434 55.000 0.00 0.00 0.00 4.37
250 251 0.977395 GATAGGGGTCGGATTCTGGG 59.023 60.000 0.00 0.00 0.00 4.45
251 252 0.977395 GGATAGGGGTCGGATTCTGG 59.023 60.000 0.00 0.00 0.00 3.86
252 253 1.620819 CTGGATAGGGGTCGGATTCTG 59.379 57.143 0.00 0.00 0.00 3.02
253 254 1.220750 ACTGGATAGGGGTCGGATTCT 59.779 52.381 0.00 0.00 0.00 2.40
254 255 1.718280 ACTGGATAGGGGTCGGATTC 58.282 55.000 0.00 0.00 0.00 2.52
255 256 2.191981 AACTGGATAGGGGTCGGATT 57.808 50.000 0.00 0.00 0.00 3.01
256 257 2.047830 GAAACTGGATAGGGGTCGGAT 58.952 52.381 0.00 0.00 0.00 4.18
257 258 1.007963 AGAAACTGGATAGGGGTCGGA 59.992 52.381 0.00 0.00 0.00 4.55
258 259 1.413077 GAGAAACTGGATAGGGGTCGG 59.587 57.143 0.00 0.00 0.00 4.79
259 260 1.413077 GGAGAAACTGGATAGGGGTCG 59.587 57.143 0.00 0.00 0.00 4.79
260 261 1.769465 GGGAGAAACTGGATAGGGGTC 59.231 57.143 0.00 0.00 0.00 4.46
261 262 1.082194 TGGGAGAAACTGGATAGGGGT 59.918 52.381 0.00 0.00 0.00 4.95
262 263 1.771255 CTGGGAGAAACTGGATAGGGG 59.229 57.143 0.00 0.00 0.00 4.79
263 264 2.764269 TCTGGGAGAAACTGGATAGGG 58.236 52.381 0.00 0.00 0.00 3.53
264 265 4.657969 AGATTCTGGGAGAAACTGGATAGG 59.342 45.833 0.00 0.00 36.23 2.57
265 266 5.885449 AGATTCTGGGAGAAACTGGATAG 57.115 43.478 0.00 0.00 36.23 2.08
266 267 6.215431 TCAAAGATTCTGGGAGAAACTGGATA 59.785 38.462 0.00 0.00 36.50 2.59
267 268 5.014544 TCAAAGATTCTGGGAGAAACTGGAT 59.985 40.000 0.00 0.00 36.50 3.41
268 269 4.350816 TCAAAGATTCTGGGAGAAACTGGA 59.649 41.667 0.00 0.00 36.50 3.86
269 270 4.655963 TCAAAGATTCTGGGAGAAACTGG 58.344 43.478 0.00 0.00 36.50 4.00
270 271 4.155644 GCTCAAAGATTCTGGGAGAAACTG 59.844 45.833 15.41 0.00 36.50 3.16
271 272 4.331108 GCTCAAAGATTCTGGGAGAAACT 58.669 43.478 15.41 0.00 38.73 2.66
272 273 3.441922 GGCTCAAAGATTCTGGGAGAAAC 59.558 47.826 15.41 0.00 37.82 2.78
273 274 3.562176 GGGCTCAAAGATTCTGGGAGAAA 60.562 47.826 15.41 0.00 37.82 2.52
274 275 2.025887 GGGCTCAAAGATTCTGGGAGAA 60.026 50.000 15.41 0.00 38.78 2.87
275 276 1.561542 GGGCTCAAAGATTCTGGGAGA 59.438 52.381 15.41 0.14 0.00 3.71
276 277 1.409381 GGGGCTCAAAGATTCTGGGAG 60.409 57.143 9.42 9.42 0.00 4.30
277 278 0.625849 GGGGCTCAAAGATTCTGGGA 59.374 55.000 0.00 0.00 0.00 4.37
278 279 0.332632 TGGGGCTCAAAGATTCTGGG 59.667 55.000 0.00 0.00 0.00 4.45
279 280 2.449137 ATGGGGCTCAAAGATTCTGG 57.551 50.000 0.00 0.00 0.00 3.86
280 281 3.512724 ACAAATGGGGCTCAAAGATTCTG 59.487 43.478 0.00 0.00 0.00 3.02
281 282 3.782992 ACAAATGGGGCTCAAAGATTCT 58.217 40.909 0.00 0.00 0.00 2.40
282 283 4.541973 AACAAATGGGGCTCAAAGATTC 57.458 40.909 0.00 0.00 0.00 2.52
283 284 4.980339 AAACAAATGGGGCTCAAAGATT 57.020 36.364 0.00 0.00 0.00 2.40
284 285 4.980339 AAAACAAATGGGGCTCAAAGAT 57.020 36.364 0.00 0.00 0.00 2.40
285 286 4.651503 TGTAAAACAAATGGGGCTCAAAGA 59.348 37.500 0.00 0.00 0.00 2.52
286 287 4.954875 TGTAAAACAAATGGGGCTCAAAG 58.045 39.130 0.00 0.00 0.00 2.77
287 288 5.359194 TTGTAAAACAAATGGGGCTCAAA 57.641 34.783 0.00 0.00 34.76 2.69
288 289 5.559148 ATTGTAAAACAAATGGGGCTCAA 57.441 34.783 0.00 0.00 41.96 3.02
289 290 5.306678 AGAATTGTAAAACAAATGGGGCTCA 59.693 36.000 0.00 0.00 41.96 4.26
290 291 5.793817 AGAATTGTAAAACAAATGGGGCTC 58.206 37.500 0.00 0.00 41.96 4.70
291 292 5.823861 AGAATTGTAAAACAAATGGGGCT 57.176 34.783 0.00 0.00 41.96 5.19
292 293 7.555965 AGATAGAATTGTAAAACAAATGGGGC 58.444 34.615 0.00 0.00 41.96 5.80
330 331 9.408648 CCCATTTGTTTTACAATCCTATCTAGT 57.591 33.333 0.00 0.00 38.00 2.57
331 332 8.850156 CCCCATTTGTTTTACAATCCTATCTAG 58.150 37.037 0.00 0.00 38.00 2.43
332 333 7.286775 GCCCCATTTGTTTTACAATCCTATCTA 59.713 37.037 0.00 0.00 38.00 1.98
333 334 6.098266 GCCCCATTTGTTTTACAATCCTATCT 59.902 38.462 0.00 0.00 38.00 1.98
334 335 6.098266 AGCCCCATTTGTTTTACAATCCTATC 59.902 38.462 0.00 0.00 38.00 2.08
335 336 5.963865 AGCCCCATTTGTTTTACAATCCTAT 59.036 36.000 0.00 0.00 38.00 2.57
336 337 5.337788 AGCCCCATTTGTTTTACAATCCTA 58.662 37.500 0.00 0.00 38.00 2.94
337 338 4.167319 AGCCCCATTTGTTTTACAATCCT 58.833 39.130 0.00 0.00 38.00 3.24
338 339 4.020662 TGAGCCCCATTTGTTTTACAATCC 60.021 41.667 0.00 0.00 38.00 3.01
339 340 5.146010 TGAGCCCCATTTGTTTTACAATC 57.854 39.130 0.00 0.00 38.00 2.67
340 341 5.559148 TTGAGCCCCATTTGTTTTACAAT 57.441 34.783 0.00 0.00 38.00 2.71
341 342 5.129485 TCTTTGAGCCCCATTTGTTTTACAA 59.871 36.000 0.00 0.00 36.11 2.41
342 343 4.651503 TCTTTGAGCCCCATTTGTTTTACA 59.348 37.500 0.00 0.00 0.00 2.41
343 344 5.208463 TCTTTGAGCCCCATTTGTTTTAC 57.792 39.130 0.00 0.00 0.00 2.01
344 345 6.269769 AGAATCTTTGAGCCCCATTTGTTTTA 59.730 34.615 0.00 0.00 0.00 1.52
345 346 4.980339 ATCTTTGAGCCCCATTTGTTTT 57.020 36.364 0.00 0.00 0.00 2.43
346 347 4.594491 AGAATCTTTGAGCCCCATTTGTTT 59.406 37.500 0.00 0.00 0.00 2.83
347 348 4.020839 CAGAATCTTTGAGCCCCATTTGTT 60.021 41.667 0.00 0.00 0.00 2.83
348 349 3.512724 CAGAATCTTTGAGCCCCATTTGT 59.487 43.478 0.00 0.00 0.00 2.83
349 350 3.118884 CCAGAATCTTTGAGCCCCATTTG 60.119 47.826 0.00 0.00 0.00 2.32
350 351 3.102204 CCAGAATCTTTGAGCCCCATTT 58.898 45.455 0.00 0.00 0.00 2.32
351 352 2.625087 CCCAGAATCTTTGAGCCCCATT 60.625 50.000 0.00 0.00 0.00 3.16
352 353 1.063417 CCCAGAATCTTTGAGCCCCAT 60.063 52.381 0.00 0.00 0.00 4.00
353 354 0.332632 CCCAGAATCTTTGAGCCCCA 59.667 55.000 0.00 0.00 0.00 4.96
354 355 0.625849 TCCCAGAATCTTTGAGCCCC 59.374 55.000 0.00 0.00 0.00 5.80
355 356 1.561542 TCTCCCAGAATCTTTGAGCCC 59.438 52.381 1.93 0.00 0.00 5.19
356 357 3.277715 CTTCTCCCAGAATCTTTGAGCC 58.722 50.000 1.93 0.00 33.13 4.70
357 358 2.682352 GCTTCTCCCAGAATCTTTGAGC 59.318 50.000 1.93 0.00 33.13 4.26
358 359 3.940221 CAGCTTCTCCCAGAATCTTTGAG 59.060 47.826 0.00 0.62 33.13 3.02
359 360 3.307975 CCAGCTTCTCCCAGAATCTTTGA 60.308 47.826 0.00 0.00 33.13 2.69
360 361 3.015327 CCAGCTTCTCCCAGAATCTTTG 58.985 50.000 0.00 0.00 33.13 2.77
361 362 2.025510 CCCAGCTTCTCCCAGAATCTTT 60.026 50.000 0.00 0.00 33.13 2.52
362 363 1.563410 CCCAGCTTCTCCCAGAATCTT 59.437 52.381 0.00 0.00 33.13 2.40
363 364 1.211456 CCCAGCTTCTCCCAGAATCT 58.789 55.000 0.00 0.00 33.13 2.40
364 365 0.915364 ACCCAGCTTCTCCCAGAATC 59.085 55.000 0.00 0.00 33.13 2.52
365 366 2.122768 CTACCCAGCTTCTCCCAGAAT 58.877 52.381 0.00 0.00 33.13 2.40
366 367 1.573108 CTACCCAGCTTCTCCCAGAA 58.427 55.000 0.00 0.00 32.50 3.02
367 368 0.325671 CCTACCCAGCTTCTCCCAGA 60.326 60.000 0.00 0.00 0.00 3.86
368 369 1.341156 CCCTACCCAGCTTCTCCCAG 61.341 65.000 0.00 0.00 0.00 4.45
369 370 1.306997 CCCTACCCAGCTTCTCCCA 60.307 63.158 0.00 0.00 0.00 4.37
370 371 2.073101 CCCCTACCCAGCTTCTCCC 61.073 68.421 0.00 0.00 0.00 4.30
371 372 1.307084 ACCCCTACCCAGCTTCTCC 60.307 63.158 0.00 0.00 0.00 3.71
372 373 1.677637 CGACCCCTACCCAGCTTCTC 61.678 65.000 0.00 0.00 0.00 2.87
373 374 1.686110 CGACCCCTACCCAGCTTCT 60.686 63.158 0.00 0.00 0.00 2.85
374 375 2.732619 CCGACCCCTACCCAGCTTC 61.733 68.421 0.00 0.00 0.00 3.86
375 376 2.547123 ATCCGACCCCTACCCAGCTT 62.547 60.000 0.00 0.00 0.00 3.74
376 377 2.547123 AATCCGACCCCTACCCAGCT 62.547 60.000 0.00 0.00 0.00 4.24
377 378 1.632965 AAATCCGACCCCTACCCAGC 61.633 60.000 0.00 0.00 0.00 4.85
378 379 0.916809 AAAATCCGACCCCTACCCAG 59.083 55.000 0.00 0.00 0.00 4.45
379 380 0.621609 CAAAATCCGACCCCTACCCA 59.378 55.000 0.00 0.00 0.00 4.51
380 381 0.106868 CCAAAATCCGACCCCTACCC 60.107 60.000 0.00 0.00 0.00 3.69
381 382 0.106868 CCCAAAATCCGACCCCTACC 60.107 60.000 0.00 0.00 0.00 3.18
382 383 0.913924 TCCCAAAATCCGACCCCTAC 59.086 55.000 0.00 0.00 0.00 3.18
383 384 1.209621 CTCCCAAAATCCGACCCCTA 58.790 55.000 0.00 0.00 0.00 3.53
384 385 0.549169 TCTCCCAAAATCCGACCCCT 60.549 55.000 0.00 0.00 0.00 4.79
385 386 0.330267 TTCTCCCAAAATCCGACCCC 59.670 55.000 0.00 0.00 0.00 4.95
386 387 2.298610 GATTCTCCCAAAATCCGACCC 58.701 52.381 0.00 0.00 0.00 4.46
387 388 2.298610 GGATTCTCCCAAAATCCGACC 58.701 52.381 0.00 0.00 41.95 4.79
409 410 4.543692 CACAGTTCTTTTGCCAGAATCTG 58.456 43.478 2.68 2.68 37.62 2.90
410 411 3.005155 GCACAGTTCTTTTGCCAGAATCT 59.995 43.478 0.00 0.00 35.23 2.40
411 412 3.311966 GCACAGTTCTTTTGCCAGAATC 58.688 45.455 0.00 0.00 35.23 2.52
412 413 3.375782 GCACAGTTCTTTTGCCAGAAT 57.624 42.857 0.00 0.00 35.23 2.40
413 414 2.869233 GCACAGTTCTTTTGCCAGAA 57.131 45.000 0.00 0.00 0.00 3.02
418 419 4.006319 AGATCTAGGCACAGTTCTTTTGC 58.994 43.478 0.00 0.00 35.40 3.68
419 420 5.121454 GTGAGATCTAGGCACAGTTCTTTTG 59.879 44.000 7.89 0.00 32.96 2.44
420 421 5.012561 AGTGAGATCTAGGCACAGTTCTTTT 59.987 40.000 13.72 0.00 35.08 2.27
421 422 4.530161 AGTGAGATCTAGGCACAGTTCTTT 59.470 41.667 13.72 0.00 35.08 2.52
422 423 4.081752 CAGTGAGATCTAGGCACAGTTCTT 60.082 45.833 13.72 0.00 35.08 2.52
423 424 3.446873 CAGTGAGATCTAGGCACAGTTCT 59.553 47.826 13.72 0.00 35.08 3.01
424 425 3.445450 TCAGTGAGATCTAGGCACAGTTC 59.555 47.826 13.72 0.00 35.08 3.01
425 426 3.435275 TCAGTGAGATCTAGGCACAGTT 58.565 45.455 13.72 0.00 35.08 3.16
426 427 3.093057 TCAGTGAGATCTAGGCACAGT 57.907 47.619 13.72 0.24 35.08 3.55
427 428 4.180057 GTTTCAGTGAGATCTAGGCACAG 58.820 47.826 13.72 7.28 35.08 3.66
428 429 3.055819 GGTTTCAGTGAGATCTAGGCACA 60.056 47.826 13.72 0.00 35.08 4.57
429 430 3.526534 GGTTTCAGTGAGATCTAGGCAC 58.473 50.000 0.00 0.00 0.00 5.01
430 431 2.166459 CGGTTTCAGTGAGATCTAGGCA 59.834 50.000 0.00 0.00 0.00 4.75
431 432 2.815478 CGGTTTCAGTGAGATCTAGGC 58.185 52.381 0.00 0.00 0.00 3.93
432 433 2.482142 GGCGGTTTCAGTGAGATCTAGG 60.482 54.545 0.00 0.00 0.00 3.02
433 434 2.166459 TGGCGGTTTCAGTGAGATCTAG 59.834 50.000 0.00 0.00 0.00 2.43
434 435 2.166459 CTGGCGGTTTCAGTGAGATCTA 59.834 50.000 0.00 0.00 0.00 1.98
435 436 0.976641 TGGCGGTTTCAGTGAGATCT 59.023 50.000 0.00 0.00 0.00 2.75
467 468 3.000727 CAAAGAGTATTGGACGACCACC 58.999 50.000 5.99 0.00 46.80 4.61
479 480 4.800993 CGAGAAGAATGCGACAAAGAGTAT 59.199 41.667 0.00 0.00 0.00 2.12
485 486 1.798223 CCACGAGAAGAATGCGACAAA 59.202 47.619 0.00 0.00 0.00 2.83
489 490 1.270094 ACAACCACGAGAAGAATGCGA 60.270 47.619 0.00 0.00 0.00 5.10
502 503 1.257155 GAAGACGTCGACAACAACCAC 59.743 52.381 17.16 0.00 0.00 4.16
538 539 4.439776 GGTTTTGACACAACGTATGAAAGC 59.560 41.667 6.73 3.63 0.00 3.51
544 545 4.496175 GGAAACGGTTTTGACACAACGTAT 60.496 41.667 7.65 0.00 33.85 3.06
545 546 3.181512 GGAAACGGTTTTGACACAACGTA 60.182 43.478 7.65 0.00 33.85 3.57
546 547 2.414426 GGAAACGGTTTTGACACAACGT 60.414 45.455 7.65 0.00 35.95 3.99
552 554 2.950975 GGTAAGGGAAACGGTTTTGACA 59.049 45.455 7.65 0.00 0.00 3.58
558 560 1.668793 CGCGGTAAGGGAAACGGTT 60.669 57.895 0.00 0.00 34.27 4.44
577 579 0.457851 CTGGATCTCCGAGACACCAC 59.542 60.000 17.26 2.30 39.43 4.16
610 612 3.047280 ATCGCGCCGTGAGCAAAA 61.047 55.556 6.49 0.00 44.04 2.44
711 963 9.831737 CAACTTTACAAGAACATCCTTATGAAG 57.168 33.333 0.00 0.00 36.54 3.02
729 981 7.253684 CGGTATCTTCAAGTCGATCAACTTTAC 60.254 40.741 0.00 0.00 37.38 2.01
770 1029 1.433837 GAGAGGACGAGGAGAGACGC 61.434 65.000 0.00 0.00 0.00 5.19
787 1051 0.036765 TTTGGATCCGGGACAACGAG 60.037 55.000 7.39 0.00 35.47 4.18
799 1063 2.416893 GCTTTGGACTCGACTTTGGATC 59.583 50.000 0.00 0.00 0.00 3.36
819 1083 2.741486 TAGCGGGACAGTGTTTGGGC 62.741 60.000 0.00 0.00 0.00 5.36
822 1086 1.263217 GTTGTAGCGGGACAGTGTTTG 59.737 52.381 0.00 0.00 0.00 2.93
823 1087 1.589803 GTTGTAGCGGGACAGTGTTT 58.410 50.000 0.00 0.00 0.00 2.83
824 1088 0.250166 GGTTGTAGCGGGACAGTGTT 60.250 55.000 0.00 0.00 0.00 3.32
825 1089 1.370064 GGTTGTAGCGGGACAGTGT 59.630 57.895 0.00 0.00 0.00 3.55
828 1092 2.119484 TTGGGGTTGTAGCGGGACAG 62.119 60.000 0.00 0.00 0.00 3.51
829 1093 1.706995 TTTGGGGTTGTAGCGGGACA 61.707 55.000 0.00 0.00 0.00 4.02
830 1094 0.537828 TTTTGGGGTTGTAGCGGGAC 60.538 55.000 0.00 0.00 0.00 4.46
831 1095 0.406361 ATTTTGGGGTTGTAGCGGGA 59.594 50.000 0.00 0.00 0.00 5.14
833 1097 1.743394 GAGATTTTGGGGTTGTAGCGG 59.257 52.381 0.00 0.00 0.00 5.52
837 1101 2.617021 GGAGCGAGATTTTGGGGTTGTA 60.617 50.000 0.00 0.00 0.00 2.41
838 1102 1.534729 GAGCGAGATTTTGGGGTTGT 58.465 50.000 0.00 0.00 0.00 3.32
839 1103 0.811281 GGAGCGAGATTTTGGGGTTG 59.189 55.000 0.00 0.00 0.00 3.77
840 1104 0.323451 GGGAGCGAGATTTTGGGGTT 60.323 55.000 0.00 0.00 0.00 4.11
841 1105 1.303282 GGGAGCGAGATTTTGGGGT 59.697 57.895 0.00 0.00 0.00 4.95
842 1106 1.453928 GGGGAGCGAGATTTTGGGG 60.454 63.158 0.00 0.00 0.00 4.96
845 1109 1.383523 GGAAGGGGAGCGAGATTTTG 58.616 55.000 0.00 0.00 0.00 2.44
846 1110 0.256177 GGGAAGGGGAGCGAGATTTT 59.744 55.000 0.00 0.00 0.00 1.82
847 1111 1.915983 GGGAAGGGGAGCGAGATTT 59.084 57.895 0.00 0.00 0.00 2.17
849 1113 2.840102 CGGGAAGGGGAGCGAGAT 60.840 66.667 0.00 0.00 0.00 2.75
932 1220 0.596577 TCGGCGTATGTATGAGGAGC 59.403 55.000 6.85 0.00 0.00 4.70
958 1246 1.403679 CCCTACTCTGCTTCTCGACTG 59.596 57.143 0.00 0.00 0.00 3.51
1022 1324 3.157949 GAGGGAGGGAAGGAGCGG 61.158 72.222 0.00 0.00 0.00 5.52
1024 1326 1.764454 GAGGAGGGAGGGAAGGAGC 60.764 68.421 0.00 0.00 0.00 4.70
1025 1327 0.043334 TTGAGGAGGGAGGGAAGGAG 59.957 60.000 0.00 0.00 0.00 3.69
1028 1330 1.631071 GCCTTGAGGAGGGAGGGAAG 61.631 65.000 0.06 0.00 46.40 3.46
1029 1331 1.616628 GCCTTGAGGAGGGAGGGAA 60.617 63.158 0.06 0.00 46.40 3.97
1172 1474 3.002371 GGAGGGGCTGAAGAAGGG 58.998 66.667 0.00 0.00 0.00 3.95
1175 1477 2.291043 GGACGGAGGGGCTGAAGAA 61.291 63.158 0.00 0.00 0.00 2.52
1178 1480 2.683933 GAGGACGGAGGGGCTGAA 60.684 66.667 0.00 0.00 0.00 3.02
1179 1481 3.539593 TTGAGGACGGAGGGGCTGA 62.540 63.158 0.00 0.00 0.00 4.26
1180 1482 3.003173 TTGAGGACGGAGGGGCTG 61.003 66.667 0.00 0.00 0.00 4.85
1181 1483 3.003763 GTTGAGGACGGAGGGGCT 61.004 66.667 0.00 0.00 0.00 5.19
1182 1484 4.097361 GGTTGAGGACGGAGGGGC 62.097 72.222 0.00 0.00 0.00 5.80
1183 1485 2.284699 AGGTTGAGGACGGAGGGG 60.285 66.667 0.00 0.00 0.00 4.79
1184 1486 1.192146 TTGAGGTTGAGGACGGAGGG 61.192 60.000 0.00 0.00 0.00 4.30
1185 1487 0.247736 CTTGAGGTTGAGGACGGAGG 59.752 60.000 0.00 0.00 0.00 4.30
1186 1488 0.247736 CCTTGAGGTTGAGGACGGAG 59.752 60.000 0.00 0.00 34.91 4.63
1187 1489 2.362242 CCTTGAGGTTGAGGACGGA 58.638 57.895 0.00 0.00 34.91 4.69
1258 1560 2.671963 GAAAAGCCGCGGGAAGGT 60.672 61.111 29.38 2.46 0.00 3.50
1261 1563 2.359478 GAGGAAAAGCCGCGGGAA 60.359 61.111 29.38 0.00 43.43 3.97
1293 1599 3.712907 GTACCTGAAGCCGCCCCA 61.713 66.667 0.00 0.00 0.00 4.96
1298 1604 1.448540 CTGCAGGTACCTGAAGCCG 60.449 63.158 40.26 20.57 46.30 5.52
1300 1606 1.078143 CCCTGCAGGTACCTGAAGC 60.078 63.158 40.26 27.24 46.01 3.86
1346 1659 3.995199 TCATTTCATCAGCTCGGATACC 58.005 45.455 0.00 0.00 0.00 2.73
1347 1660 6.870965 AGTATTCATTTCATCAGCTCGGATAC 59.129 38.462 0.00 0.00 0.00 2.24
1348 1661 6.997655 AGTATTCATTTCATCAGCTCGGATA 58.002 36.000 0.00 0.00 0.00 2.59
1349 1662 5.862845 AGTATTCATTTCATCAGCTCGGAT 58.137 37.500 0.00 0.00 0.00 4.18
1350 1663 5.282055 AGTATTCATTTCATCAGCTCGGA 57.718 39.130 0.00 0.00 0.00 4.55
1351 1664 5.117745 CGTAGTATTCATTTCATCAGCTCGG 59.882 44.000 0.00 0.00 0.00 4.63
1353 1666 7.148885 GCTACGTAGTATTCATTTCATCAGCTC 60.149 40.741 22.98 0.00 44.56 4.09
1374 1691 1.633561 CCACACACAGATCTGCTACG 58.366 55.000 22.83 11.06 0.00 3.51
1379 1698 1.875514 CACAACCCACACACAGATCTG 59.124 52.381 21.37 21.37 0.00 2.90
1416 1741 7.440523 AAATTACAGCTTTACAAGAGTCCTG 57.559 36.000 0.00 0.00 0.00 3.86
1432 1757 6.090898 ACGCTACTAGCTCACAAAAATTACAG 59.909 38.462 6.50 0.00 39.60 2.74
1456 1783 0.676736 CCCTCTCATCGGCCTAGAAC 59.323 60.000 0.00 0.00 0.00 3.01
1467 1794 4.586841 GCTGTCAGTCTATAACCCTCTCAT 59.413 45.833 0.93 0.00 0.00 2.90
1470 1797 3.957497 CTGCTGTCAGTCTATAACCCTCT 59.043 47.826 0.93 0.00 35.61 3.69
1472 1799 3.034635 CCTGCTGTCAGTCTATAACCCT 58.965 50.000 0.93 0.00 38.66 4.34
1500 1827 0.108424 CAGAGCTAAGAACTGCGCCT 60.108 55.000 4.18 0.00 0.00 5.52
1504 1831 1.066573 TGGCTCAGAGCTAAGAACTGC 60.067 52.381 21.99 2.60 41.99 4.40
1565 1894 9.599866 TTTGTCATCAATCTTCAAGTACGATAT 57.400 29.630 0.00 0.00 33.32 1.63
1566 1895 8.996024 TTTGTCATCAATCTTCAAGTACGATA 57.004 30.769 0.00 0.00 33.32 2.92
1567 1896 7.905604 TTTGTCATCAATCTTCAAGTACGAT 57.094 32.000 0.00 0.00 33.32 3.73
1568 1897 7.905604 ATTTGTCATCAATCTTCAAGTACGA 57.094 32.000 0.00 0.00 33.32 3.43
1600 1929 3.492656 CCTGTGGTCGTCAAGAGAGAAAA 60.493 47.826 0.00 0.00 0.00 2.29
1605 1934 0.178973 TCCCTGTGGTCGTCAAGAGA 60.179 55.000 0.00 0.00 0.00 3.10
1629 1958 3.568007 TGCAGCCTTTTACTGACGAAAAT 59.432 39.130 0.00 0.00 37.32 1.82
1634 1963 3.559238 AATTGCAGCCTTTTACTGACG 57.441 42.857 0.00 0.00 37.32 4.35
1658 1990 5.116180 CAGGCAATTTGTATAGAGACGGAA 58.884 41.667 0.00 0.00 0.00 4.30
1662 1994 6.985188 TGAACAGGCAATTTGTATAGAGAC 57.015 37.500 0.00 0.00 0.00 3.36
1678 2010 5.163581 GGATGGATGAAGAACATTGAACAGG 60.164 44.000 0.00 0.00 39.56 4.00
1702 2034 1.201429 ACTGTGCTTCCAGTAGGGGG 61.201 60.000 2.97 0.00 43.71 5.40
1851 2450 6.905544 CACAATATGTGGCATTGCAATTAA 57.094 33.333 9.83 0.00 44.27 1.40
2011 2627 4.741928 AAAAGGACCCCTGTAGACATTT 57.258 40.909 0.00 0.00 32.13 2.32
2061 2681 3.001736 GTCAACTGATTGAGCGCCTTATC 59.998 47.826 2.29 4.95 45.58 1.75
2080 2700 3.261580 CATCGTGGCTAAATGACAGTCA 58.738 45.455 5.50 5.50 31.98 3.41
2230 2853 7.282200 CGAATTCTTCAGAATCAATCATCTCG 58.718 38.462 3.52 2.83 43.41 4.04
2254 2910 1.275291 TCTGAGGGTGAAGTTAAGGCG 59.725 52.381 0.00 0.00 0.00 5.52
2297 3010 6.479331 GGAGCCTTCTTATTCTTAGGTTTACG 59.521 42.308 0.00 0.00 0.00 3.18
2350 3063 3.693085 CCCCACACTGAGATTGATTCTTG 59.307 47.826 0.00 0.00 33.74 3.02
2359 3072 2.291800 CCCAAAATCCCCACACTGAGAT 60.292 50.000 0.00 0.00 0.00 2.75
2397 3110 3.265221 AGGCTCATCAAGATCAACTTCCA 59.735 43.478 0.00 0.00 36.61 3.53
2440 3153 7.519032 TTTACAAGGTGGTATCTTTCCTTTG 57.481 36.000 0.00 0.00 38.09 2.77
2445 3158 6.569179 TTGCTTTACAAGGTGGTATCTTTC 57.431 37.500 0.00 0.00 33.24 2.62
2480 3193 3.318275 GCATGTGGAGAAGATGATGCATT 59.682 43.478 0.00 0.00 36.91 3.56
2533 3246 1.337167 TGCACAGGACTGACTTCATCG 60.337 52.381 6.29 0.00 0.00 3.84
2709 3422 5.006455 CAGAAGTCATGTGGATTGATCTTCG 59.994 44.000 0.00 0.00 36.91 3.79
2774 3490 5.813513 AGTTTTGATGCAAAAAGGATCCT 57.186 34.783 9.02 9.02 43.50 3.24
2817 3539 7.420800 CAGGTATTTCTTCATTATGTTCTGCC 58.579 38.462 0.00 0.00 0.00 4.85
2839 3561 1.692042 AGCAGATGTCCTCCCCAGG 60.692 63.158 0.00 0.00 42.01 4.45
2890 3612 3.436704 AGCACAACAGATAAATGGTCACG 59.563 43.478 0.00 0.00 0.00 4.35
2960 3682 2.299582 TGTTCAATTGCTTGGGTGATGG 59.700 45.455 0.00 0.00 32.95 3.51
2971 3693 4.919754 GTCAGAAACATCCTGTTCAATTGC 59.080 41.667 0.00 0.00 40.14 3.56
3057 3779 3.018856 GCACACTTCATCAATGGGATCA 58.981 45.455 0.00 0.00 32.57 2.92
3134 3856 4.392940 AGACAACAGAAGTTCATTCCCAG 58.607 43.478 5.50 0.00 38.84 4.45
3144 3866 6.281405 ACGATTAACAGAAGACAACAGAAGT 58.719 36.000 0.00 0.00 0.00 3.01
3145 3867 6.771188 ACGATTAACAGAAGACAACAGAAG 57.229 37.500 0.00 0.00 0.00 2.85
3177 3899 9.761504 CTGTATTCATTGTTATCTGTCTGATCT 57.238 33.333 0.00 0.00 36.65 2.75
3271 3993 8.717821 GCGCCTCATATATGTTTTAAACTCATA 58.282 33.333 12.42 11.95 0.00 2.15
3402 4124 2.557924 TGTTTTCACATCATGGCAGACC 59.442 45.455 0.00 0.00 0.00 3.85
3631 4353 0.179018 ACAGTTGGTGGGCTCAGAAC 60.179 55.000 0.00 0.00 0.00 3.01
3684 4406 1.600957 GATGACTCATCCATGTTGGCG 59.399 52.381 7.71 0.00 37.47 5.69
3833 4555 5.872963 AGCTATCTGATATTGCACATCCAA 58.127 37.500 10.40 0.00 0.00 3.53
3928 4650 2.404789 CGCCCTAGTTTGCGCATG 59.595 61.111 12.75 0.00 44.64 4.06
4712 5503 5.455392 ACGCAGAAAGACAAATCTGAAATG 58.545 37.500 6.95 0.00 44.64 2.32
4822 5616 9.677567 GAAACTAACTTTGAACAAATCATAGCA 57.322 29.630 0.44 0.00 39.81 3.49
4823 5617 9.899226 AGAAACTAACTTTGAACAAATCATAGC 57.101 29.630 0.44 0.00 39.81 2.97
4963 5789 5.447818 GCACTAATTAATGCACAGACAGGAC 60.448 44.000 13.75 0.00 41.65 3.85
5337 6244 1.825474 CTTCTTTCCCTCCAGCGTCTA 59.175 52.381 0.00 0.00 0.00 2.59
5640 6558 7.615403 ACAAGTATAGACACAATGACAGACAT 58.385 34.615 0.00 0.00 41.45 3.06
5641 6559 6.993079 ACAAGTATAGACACAATGACAGACA 58.007 36.000 0.00 0.00 0.00 3.41
5642 6560 7.891183 AACAAGTATAGACACAATGACAGAC 57.109 36.000 0.00 0.00 0.00 3.51
5643 6561 8.902540 AAAACAAGTATAGACACAATGACAGA 57.097 30.769 0.00 0.00 0.00 3.41
5702 6625 1.527034 TCAGAAGCCACTTCACATGC 58.473 50.000 9.80 0.00 42.37 4.06
5756 6679 4.453478 TGCAGCAAGTTGATTCTTGTCTAG 59.547 41.667 7.16 0.00 44.41 2.43
5848 6771 5.819901 AGAGCAGATTTAGTCATGGCTAAAC 59.180 40.000 29.65 22.65 41.81 2.01
5964 6892 9.193133 GATATACACATATGTACACCTGACAAC 57.807 37.037 8.32 0.00 44.11 3.32
5986 6914 4.263506 GCACAACCCTTAGGCTATGGATAT 60.264 45.833 24.04 9.31 36.11 1.63
5996 6924 1.813513 CAGTCTGCACAACCCTTAGG 58.186 55.000 0.00 0.00 40.04 2.69
6090 7482 5.409643 AACTCTGTTTCTGTTGATCAACG 57.590 39.130 28.55 23.04 43.94 4.10
6099 7491 5.408604 CCGCTAACATTAACTCTGTTTCTGT 59.591 40.000 0.00 0.00 37.89 3.41
6101 7493 4.392138 GCCGCTAACATTAACTCTGTTTCT 59.608 41.667 0.00 0.00 37.89 2.52
6102 7494 4.392138 AGCCGCTAACATTAACTCTGTTTC 59.608 41.667 0.00 0.00 37.89 2.78
6103 7495 4.324267 AGCCGCTAACATTAACTCTGTTT 58.676 39.130 0.00 0.00 37.89 2.83
6104 7496 3.939066 AGCCGCTAACATTAACTCTGTT 58.061 40.909 0.00 0.00 39.93 3.16
6105 7497 3.611766 AGCCGCTAACATTAACTCTGT 57.388 42.857 0.00 0.00 0.00 3.41
6106 7498 3.932710 TGAAGCCGCTAACATTAACTCTG 59.067 43.478 0.00 0.00 0.00 3.35
6107 7499 4.202245 TGAAGCCGCTAACATTAACTCT 57.798 40.909 0.00 0.00 0.00 3.24
6108 7500 5.266242 CAATGAAGCCGCTAACATTAACTC 58.734 41.667 18.78 1.86 32.75 3.01
6109 7501 4.438744 GCAATGAAGCCGCTAACATTAACT 60.439 41.667 18.78 2.62 32.75 2.24
6111 7503 3.694072 AGCAATGAAGCCGCTAACATTAA 59.306 39.130 18.78 0.00 33.25 1.40
6112 7504 3.278574 AGCAATGAAGCCGCTAACATTA 58.721 40.909 18.78 0.00 33.25 1.90
6113 7505 2.094675 AGCAATGAAGCCGCTAACATT 58.905 42.857 15.50 15.50 33.25 2.71
6114 7506 1.755179 AGCAATGAAGCCGCTAACAT 58.245 45.000 0.00 0.02 33.25 2.71
6115 7507 2.394930 TAGCAATGAAGCCGCTAACA 57.605 45.000 0.00 0.00 35.38 2.41
6117 7509 2.872245 GTGATAGCAATGAAGCCGCTAA 59.128 45.455 0.00 0.00 41.31 3.09
6118 7510 2.103094 AGTGATAGCAATGAAGCCGCTA 59.897 45.455 0.00 0.00 42.12 4.26
6119 7511 1.134280 AGTGATAGCAATGAAGCCGCT 60.134 47.619 0.00 0.00 39.80 5.52
6120 7512 1.262683 GAGTGATAGCAATGAAGCCGC 59.737 52.381 0.00 0.00 34.23 6.53
6122 7514 2.290093 GCAGAGTGATAGCAATGAAGCC 59.710 50.000 0.00 0.00 34.23 4.35
6124 7516 3.806380 AGGCAGAGTGATAGCAATGAAG 58.194 45.455 0.00 0.00 0.00 3.02
6125 7517 3.920231 AGGCAGAGTGATAGCAATGAA 57.080 42.857 0.00 0.00 0.00 2.57
6130 7979 3.920231 AATGAAGGCAGAGTGATAGCA 57.080 42.857 0.00 0.00 0.00 3.49
6134 7983 3.159472 TGCAAAATGAAGGCAGAGTGAT 58.841 40.909 0.00 0.00 32.95 3.06
6141 7990 4.059511 CACAAGAATGCAAAATGAAGGCA 58.940 39.130 0.00 0.00 42.43 4.75
6162 8011 4.348863 AGAAGAAGAAGAAGCTTGCTCA 57.651 40.909 2.10 0.00 0.00 4.26
6167 8016 6.183361 TGAGGAAGAAGAAGAAGAAGAAGCTT 60.183 38.462 0.00 0.00 0.00 3.74
6239 8088 4.777366 TCCACTCAGTACAGATTTCCATCA 59.223 41.667 0.00 0.00 0.00 3.07
6269 8139 6.422400 GGTAAATCATCGATCTTCCAGTTCTC 59.578 42.308 0.00 0.00 0.00 2.87
6293 8168 4.012374 ACTGTTTTCCATATCTGCTGTGG 58.988 43.478 0.00 0.00 37.47 4.17
6345 8220 9.952188 AGCTACAACTTCAATTCTTTTAACTTC 57.048 29.630 0.00 0.00 0.00 3.01
6355 8230 6.095947 CTAACGGAGCTACAACTTCAATTC 57.904 41.667 0.00 0.00 0.00 2.17
6476 8366 3.585862 TCTTCAGCTTCAATCACGTACC 58.414 45.455 0.00 0.00 0.00 3.34
6507 8397 1.145945 TGGCCTTGGTCACCATAACAA 59.854 47.619 3.32 0.00 31.53 2.83
6509 8399 1.917872 TTGGCCTTGGTCACCATAAC 58.082 50.000 3.32 0.00 31.53 1.89
6556 8501 5.179555 GGAGTCAGCTAGGTAGTTTTGTTTG 59.820 44.000 0.00 0.00 0.00 2.93
6585 8588 7.938490 TCCAGATTATTATAAGTCTGCATTGCA 59.062 33.333 11.50 11.50 37.38 4.08
6600 8603 8.750515 TCATTGATGCTTGTTCCAGATTATTA 57.249 30.769 0.00 0.00 0.00 0.98
6656 8664 5.817816 GGTCAACCCTGAGTGAATAATAGTG 59.182 44.000 0.00 0.00 30.14 2.74
6657 8665 5.726793 AGGTCAACCCTGAGTGAATAATAGT 59.273 40.000 0.00 0.00 44.08 2.12
6658 8666 6.240549 AGGTCAACCCTGAGTGAATAATAG 57.759 41.667 0.00 0.00 44.08 1.73
6696 8718 1.665442 CCAGGAAAAACAAGGGGCG 59.335 57.895 0.00 0.00 0.00 6.13
6726 8748 1.065418 CATAAAGGGTCTGAAGCGGGT 60.065 52.381 0.00 0.00 0.00 5.28
6755 8779 9.748708 TTACTGAAGATTTCAAAATTGACCTTG 57.251 29.630 0.00 0.00 39.58 3.61
6784 8812 8.138365 TGTATACTAATCCGCTTCATGTTTTC 57.862 34.615 4.17 0.00 0.00 2.29
6849 8895 5.520376 CCAGAAGGTTTGTGTCTGATTTT 57.480 39.130 1.53 0.00 41.08 1.82
6876 8922 0.877071 GCGGGGCATGATCTACATTG 59.123 55.000 0.00 0.00 37.07 2.82
6907 8953 4.440758 GTGAAAAATGTGACGAACCATGTG 59.559 41.667 0.00 0.00 0.00 3.21
6912 8958 3.628017 CAGGTGAAAAATGTGACGAACC 58.372 45.455 0.00 0.00 0.00 3.62
6944 8990 9.594478 CAGTATGTATCCACAACTACATTAACA 57.406 33.333 1.02 0.00 38.94 2.41
6945 8991 9.811995 TCAGTATGTATCCACAACTACATTAAC 57.188 33.333 1.02 0.00 38.94 2.01
6960 9006 7.535997 TGCGAACTGGTATATCAGTATGTATC 58.464 38.462 18.92 11.19 46.17 2.24
6972 9018 3.965379 TTGGAACTGCGAACTGGTATA 57.035 42.857 0.00 0.00 0.00 1.47
6977 9023 3.181516 GCTCTAATTGGAACTGCGAACTG 60.182 47.826 0.00 0.00 0.00 3.16
6983 9029 5.376854 TTTTCTGCTCTAATTGGAACTGC 57.623 39.130 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.