Multiple sequence alignment - TraesCS2A01G060200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G060200 chr2A 100.000 7541 0 0 1 7541 26871728 26879268 0.000000e+00 13926.0
1 TraesCS2A01G060200 chr2B 91.751 3673 192 49 900 4499 39963624 39967258 0.000000e+00 5001.0
2 TraesCS2A01G060200 chr2B 91.964 2302 118 28 4502 6769 39967293 39969561 0.000000e+00 3164.0
3 TraesCS2A01G060200 chr2B 81.696 519 40 22 6850 7326 39969558 39970063 1.540000e-101 381.0
4 TraesCS2A01G060200 chr2B 89.535 258 24 3 3 260 39962822 39963076 2.620000e-84 324.0
5 TraesCS2A01G060200 chr2B 91.228 57 5 0 7391 7447 39971144 39971200 2.260000e-10 78.7
6 TraesCS2A01G060200 chr2B 86.957 69 6 3 377 443 697519007 697519074 2.920000e-09 75.0
7 TraesCS2A01G060200 chr2B 90.385 52 5 0 731 782 447508171 447508222 1.360000e-07 69.4
8 TraesCS2A01G060200 chr2D 93.810 3215 107 46 900 4055 24927514 24924333 0.000000e+00 4750.0
9 TraesCS2A01G060200 chr2D 92.877 2485 99 29 4495 6940 24922960 24920515 0.000000e+00 3537.0
10 TraesCS2A01G060200 chr2D 97.351 302 7 1 4059 4359 24924064 24923763 5.220000e-141 512.0
11 TraesCS2A01G060200 chr2D 93.750 160 7 2 6 165 24927782 24927626 3.520000e-58 237.0
12 TraesCS2A01G060200 chr2D 94.118 68 4 0 7262 7329 24920204 24920137 3.720000e-18 104.0
13 TraesCS2A01G060200 chr5A 95.122 82 4 0 4297 4378 619265770 619265689 6.140000e-26 130.0
14 TraesCS2A01G060200 chr6D 94.048 84 5 0 4296 4379 45518974 45518891 2.210000e-25 128.0
15 TraesCS2A01G060200 chr6D 93.827 81 5 0 4297 4377 91758604 91758684 1.030000e-23 122.0
16 TraesCS2A01G060200 chr7B 94.048 84 4 1 4297 4379 292263594 292263677 7.940000e-25 126.0
17 TraesCS2A01G060200 chr7B 87.755 49 5 1 2287 2335 273383697 273383744 1.000000e-03 56.5
18 TraesCS2A01G060200 chr3D 93.976 83 5 0 4297 4379 571592601 571592683 7.940000e-25 126.0
19 TraesCS2A01G060200 chr4B 93.902 82 5 0 4297 4378 365443607 365443688 2.860000e-24 124.0
20 TraesCS2A01G060200 chrUn 92.771 83 6 0 4297 4379 93410232 93410314 3.700000e-23 121.0
21 TraesCS2A01G060200 chr4A 84.906 106 15 1 2233 2337 278366152 278366257 1.030000e-18 106.0
22 TraesCS2A01G060200 chr7D 88.608 79 4 5 381 456 463857026 463856950 2.900000e-14 91.6
23 TraesCS2A01G060200 chr7D 92.105 38 3 0 378 415 28538269 28538306 4.000000e-03 54.7
24 TraesCS2A01G060200 chr5D 94.444 36 2 0 2287 2322 454112616 454112651 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G060200 chr2A 26871728 26879268 7540 False 13926.00 13926 100.0000 1 7541 1 chr2A.!!$F1 7540
1 TraesCS2A01G060200 chr2B 39962822 39971200 8378 False 1789.74 5001 89.2348 3 7447 5 chr2B.!!$F3 7444
2 TraesCS2A01G060200 chr2D 24920137 24927782 7645 True 1828.00 4750 94.3812 6 7329 5 chr2D.!!$R1 7323

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
416 417 0.027979 CACAGTTGTGCTTCACGGTG 59.972 55.000 0.56 0.56 39.39 4.94 F
1011 1145 0.037232 ACTGGACCAACGCTAGCTTC 60.037 55.000 13.93 1.18 0.00 3.86 F
1569 1722 0.411452 AGCAGGGGTCAGAAGAGAGA 59.589 55.000 0.00 0.00 0.00 3.10 F
3247 3470 1.001860 GGCACTGAAGCAAGAGTCTCT 59.998 52.381 0.00 0.00 35.83 3.10 F
4491 5621 1.068895 TGTGCGTCTTTTAACGAGGGA 59.931 47.619 0.00 0.00 45.37 4.20 F
5121 6287 1.227205 GATCACCGCTCTGCCTCAG 60.227 63.158 0.00 0.00 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1400 1553 0.179020 AGTGGCAAGCTACTGCACAA 60.179 50.000 10.38 0.00 44.52 3.33 R
2283 2497 0.391597 GCCACCGCCTAGTGCTTATA 59.608 55.000 2.39 0.00 38.05 0.98 R
3389 3612 0.175531 GCTCTTCCTCAGGAGACAGC 59.824 60.000 0.00 0.00 31.21 4.40 R
5119 6285 0.178998 ATTGGCATAGGCTGAGGCTG 60.179 55.000 19.68 4.73 39.30 4.85 R
6129 7320 3.003173 CCTCGGCCCTGGAACTGA 61.003 66.667 0.00 0.00 0.00 3.41 R
7032 8271 0.038251 CTCTGGCTCACTGCGTGTTA 60.038 55.000 8.22 0.00 44.05 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 6.775629 ACAACCCTTGCTAAAGAATACAGAAA 59.224 34.615 0.00 0.00 35.19 2.52
112 113 1.945394 CTCTTTGATCCGAGGCATTGG 59.055 52.381 0.00 0.00 0.00 3.16
123 124 3.443681 CCGAGGCATTGGAATACAAGTTT 59.556 43.478 0.00 0.00 43.48 2.66
199 200 6.182507 AGTCCAGTACATCAAAAACTACCA 57.817 37.500 0.00 0.00 0.00 3.25
211 212 9.971922 CATCAAAAACTACCAAGAAAGAAATCT 57.028 29.630 0.00 0.00 0.00 2.40
213 214 9.184523 TCAAAAACTACCAAGAAAGAAATCTGA 57.815 29.630 0.00 0.00 0.00 3.27
215 216 7.751768 AAACTACCAAGAAAGAAATCTGAGG 57.248 36.000 0.00 0.00 33.74 3.86
216 217 5.249420 ACTACCAAGAAAGAAATCTGAGGC 58.751 41.667 0.00 0.00 31.80 4.70
256 257 0.755698 CTAGGGCTTCCTGTAGCGGA 60.756 60.000 0.00 0.00 41.87 5.54
265 266 4.354155 TGTAGCGGACAGTTGTGC 57.646 55.556 0.00 0.00 32.86 4.57
266 267 1.745890 TGTAGCGGACAGTTGTGCT 59.254 52.632 2.35 2.77 41.32 4.40
267 268 0.105964 TGTAGCGGACAGTTGTGCTT 59.894 50.000 2.93 0.00 38.82 3.91
268 269 0.790814 GTAGCGGACAGTTGTGCTTC 59.209 55.000 2.93 0.00 38.82 3.86
269 270 0.391228 TAGCGGACAGTTGTGCTTCA 59.609 50.000 2.93 0.00 38.82 3.02
272 273 1.859998 GCGGACAGTTGTGCTTCAAAC 60.860 52.381 2.35 0.00 37.81 2.93
273 274 1.670811 CGGACAGTTGTGCTTCAAACT 59.329 47.619 2.35 0.00 37.81 2.66
274 275 2.869801 CGGACAGTTGTGCTTCAAACTA 59.130 45.455 2.35 0.00 37.81 2.24
276 277 4.611355 CGGACAGTTGTGCTTCAAACTATG 60.611 45.833 2.35 0.00 37.81 2.23
277 278 4.222114 GACAGTTGTGCTTCAAACTATGC 58.778 43.478 0.00 0.00 37.81 3.14
280 281 4.913924 CAGTTGTGCTTCAAACTATGCTTC 59.086 41.667 0.00 0.00 37.81 3.86
282 283 5.300286 AGTTGTGCTTCAAACTATGCTTCTT 59.700 36.000 0.00 0.00 37.81 2.52
284 285 4.821260 TGTGCTTCAAACTATGCTTCTTGA 59.179 37.500 0.00 0.00 0.00 3.02
285 286 5.299028 TGTGCTTCAAACTATGCTTCTTGAA 59.701 36.000 0.00 0.00 36.59 2.69
286 287 6.183360 TGTGCTTCAAACTATGCTTCTTGAAA 60.183 34.615 0.00 0.00 37.34 2.69
287 288 6.697019 GTGCTTCAAACTATGCTTCTTGAAAA 59.303 34.615 0.00 0.00 37.34 2.29
289 290 6.920210 GCTTCAAACTATGCTTCTTGAAAAGT 59.080 34.615 0.00 0.00 46.34 2.66
291 292 7.566760 TCAAACTATGCTTCTTGAAAAGTGA 57.433 32.000 0.00 0.00 46.34 3.41
292 293 7.995289 TCAAACTATGCTTCTTGAAAAGTGAA 58.005 30.769 0.00 0.00 46.34 3.18
294 295 8.749499 CAAACTATGCTTCTTGAAAAGTGAAAG 58.251 33.333 0.00 0.00 46.34 2.62
295 296 6.974965 ACTATGCTTCTTGAAAAGTGAAAGG 58.025 36.000 0.00 0.00 46.34 3.11
296 297 4.045636 TGCTTCTTGAAAAGTGAAAGGC 57.954 40.909 0.00 0.00 46.34 4.35
297 298 3.446873 TGCTTCTTGAAAAGTGAAAGGCA 59.553 39.130 0.00 0.00 46.34 4.75
298 299 4.099881 TGCTTCTTGAAAAGTGAAAGGCAT 59.900 37.500 0.00 0.00 46.34 4.40
299 300 5.301551 TGCTTCTTGAAAAGTGAAAGGCATA 59.698 36.000 0.00 0.00 46.34 3.14
300 301 5.860716 GCTTCTTGAAAAGTGAAAGGCATAG 59.139 40.000 0.00 0.00 46.34 2.23
301 302 5.376854 TCTTGAAAAGTGAAAGGCATAGC 57.623 39.130 0.00 0.00 46.34 2.97
302 303 4.826733 TCTTGAAAAGTGAAAGGCATAGCA 59.173 37.500 0.00 0.00 46.34 3.49
304 305 6.658816 TCTTGAAAAGTGAAAGGCATAGCATA 59.341 34.615 0.00 0.00 46.34 3.14
305 306 6.441093 TGAAAAGTGAAAGGCATAGCATAG 57.559 37.500 0.00 0.00 0.00 2.23
306 307 4.907879 AAAGTGAAAGGCATAGCATAGC 57.092 40.909 0.00 0.00 0.00 2.97
307 308 3.853355 AGTGAAAGGCATAGCATAGCT 57.147 42.857 0.00 0.00 43.41 3.32
308 309 4.963318 AGTGAAAGGCATAGCATAGCTA 57.037 40.909 0.00 0.00 45.55 3.32
324 325 6.145807 CATAGCTATGCTACACGACAAATC 57.854 41.667 20.37 0.00 44.24 2.17
325 326 4.392921 AGCTATGCTACACGACAAATCT 57.607 40.909 0.00 0.00 36.99 2.40
326 327 4.363999 AGCTATGCTACACGACAAATCTC 58.636 43.478 0.00 0.00 36.99 2.75
327 328 4.112634 GCTATGCTACACGACAAATCTCA 58.887 43.478 0.00 0.00 0.00 3.27
328 329 4.026475 GCTATGCTACACGACAAATCTCAC 60.026 45.833 0.00 0.00 0.00 3.51
329 330 3.378911 TGCTACACGACAAATCTCACA 57.621 42.857 0.00 0.00 0.00 3.58
330 331 3.925379 TGCTACACGACAAATCTCACAT 58.075 40.909 0.00 0.00 0.00 3.21
331 332 3.679502 TGCTACACGACAAATCTCACATG 59.320 43.478 0.00 0.00 0.00 3.21
332 333 3.679980 GCTACACGACAAATCTCACATGT 59.320 43.478 0.00 0.00 0.00 3.21
333 334 4.862574 GCTACACGACAAATCTCACATGTA 59.137 41.667 0.00 0.00 0.00 2.29
334 335 5.220228 GCTACACGACAAATCTCACATGTAC 60.220 44.000 0.00 0.00 0.00 2.90
335 336 4.883083 ACACGACAAATCTCACATGTACT 58.117 39.130 0.00 0.00 0.00 2.73
336 337 5.297547 ACACGACAAATCTCACATGTACTT 58.702 37.500 0.00 0.00 0.00 2.24
337 338 5.405571 ACACGACAAATCTCACATGTACTTC 59.594 40.000 0.00 0.00 0.00 3.01
338 339 5.635280 CACGACAAATCTCACATGTACTTCT 59.365 40.000 0.00 0.00 0.00 2.85
339 340 5.864474 ACGACAAATCTCACATGTACTTCTC 59.136 40.000 0.00 0.00 0.00 2.87
340 341 5.003872 CGACAAATCTCACATGTACTTCTCG 59.996 44.000 0.00 0.00 0.00 4.04
341 342 6.025749 ACAAATCTCACATGTACTTCTCGA 57.974 37.500 0.00 0.00 0.00 4.04
342 343 6.455647 ACAAATCTCACATGTACTTCTCGAA 58.544 36.000 0.00 0.00 0.00 3.71
343 344 6.929049 ACAAATCTCACATGTACTTCTCGAAA 59.071 34.615 0.00 0.00 0.00 3.46
344 345 7.441157 ACAAATCTCACATGTACTTCTCGAAAA 59.559 33.333 0.00 0.00 0.00 2.29
345 346 7.588143 AATCTCACATGTACTTCTCGAAAAG 57.412 36.000 0.00 0.00 0.00 2.27
346 347 6.085555 TCTCACATGTACTTCTCGAAAAGT 57.914 37.500 9.46 9.46 42.10 2.66
347 348 5.920840 TCTCACATGTACTTCTCGAAAAGTG 59.079 40.000 14.40 0.00 39.74 3.16
348 349 5.838529 TCACATGTACTTCTCGAAAAGTGA 58.161 37.500 14.40 1.22 39.74 3.41
349 350 6.277605 TCACATGTACTTCTCGAAAAGTGAA 58.722 36.000 14.40 2.67 39.74 3.18
350 351 6.759356 TCACATGTACTTCTCGAAAAGTGAAA 59.241 34.615 14.40 0.19 39.74 2.69
351 352 7.279090 TCACATGTACTTCTCGAAAAGTGAAAA 59.721 33.333 14.40 0.00 39.74 2.29
352 353 7.908082 CACATGTACTTCTCGAAAAGTGAAAAA 59.092 33.333 14.40 0.00 39.74 1.94
374 375 1.590932 CACAGCTGTGCTCAGAAAGT 58.409 50.000 32.39 10.49 43.76 2.66
375 376 1.945394 CACAGCTGTGCTCAGAAAGTT 59.055 47.619 32.39 0.00 43.76 2.66
376 377 1.945394 ACAGCTGTGCTCAGAAAGTTG 59.055 47.619 20.97 10.44 43.76 3.16
377 378 1.945394 CAGCTGTGCTCAGAAAGTTGT 59.055 47.619 19.61 0.00 43.76 3.32
378 379 1.945394 AGCTGTGCTCAGAAAGTTGTG 59.055 47.619 19.61 0.00 43.76 3.33
379 380 1.598924 GCTGTGCTCAGAAAGTTGTGC 60.599 52.381 19.61 0.00 43.76 4.57
380 381 1.945394 CTGTGCTCAGAAAGTTGTGCT 59.055 47.619 10.27 0.00 43.76 4.40
381 382 2.357009 CTGTGCTCAGAAAGTTGTGCTT 59.643 45.455 10.27 0.00 43.76 3.91
382 383 2.355756 TGTGCTCAGAAAGTTGTGCTTC 59.644 45.455 2.41 0.00 38.16 3.86
383 384 2.615912 GTGCTCAGAAAGTTGTGCTTCT 59.384 45.455 2.41 0.00 38.16 2.85
384 385 2.874701 TGCTCAGAAAGTTGTGCTTCTC 59.125 45.455 2.41 0.00 38.16 2.87
385 386 2.096516 GCTCAGAAAGTTGTGCTTCTCG 60.097 50.000 0.00 0.00 36.17 4.04
386 387 3.384668 CTCAGAAAGTTGTGCTTCTCGA 58.615 45.455 0.00 0.00 36.17 4.04
387 388 3.792401 TCAGAAAGTTGTGCTTCTCGAA 58.208 40.909 0.00 0.00 36.17 3.71
388 389 4.188462 TCAGAAAGTTGTGCTTCTCGAAA 58.812 39.130 0.00 0.00 36.17 3.46
389 390 4.271049 TCAGAAAGTTGTGCTTCTCGAAAG 59.729 41.667 0.00 0.00 36.17 2.62
390 391 4.034510 CAGAAAGTTGTGCTTCTCGAAAGT 59.965 41.667 8.47 0.00 36.17 2.66
391 392 3.951979 AAGTTGTGCTTCTCGAAAGTG 57.048 42.857 8.47 0.00 30.06 3.16
392 393 3.179443 AGTTGTGCTTCTCGAAAGTGA 57.821 42.857 8.47 0.00 0.00 3.41
393 394 3.531538 AGTTGTGCTTCTCGAAAGTGAA 58.468 40.909 8.47 0.00 40.84 3.18
394 395 3.938963 AGTTGTGCTTCTCGAAAGTGAAA 59.061 39.130 8.47 0.85 42.27 2.69
395 396 4.394920 AGTTGTGCTTCTCGAAAGTGAAAA 59.605 37.500 8.47 0.00 42.27 2.29
396 397 4.955925 TGTGCTTCTCGAAAGTGAAAAA 57.044 36.364 8.47 0.00 42.27 1.94
397 398 4.658071 TGTGCTTCTCGAAAGTGAAAAAC 58.342 39.130 8.47 1.59 42.27 2.43
398 399 4.155099 TGTGCTTCTCGAAAGTGAAAAACA 59.845 37.500 8.47 3.59 42.27 2.83
415 416 2.393557 CACAGTTGTGCTTCACGGT 58.606 52.632 0.00 0.00 39.39 4.83
416 417 0.027979 CACAGTTGTGCTTCACGGTG 59.972 55.000 0.56 0.56 39.39 4.94
417 418 0.107897 ACAGTTGTGCTTCACGGTGA 60.108 50.000 6.76 6.76 37.14 4.02
418 419 1.013596 CAGTTGTGCTTCACGGTGAA 58.986 50.000 21.30 21.30 37.14 3.18
428 429 4.685169 CTTCACGGTGAAGCATAATTGT 57.315 40.909 31.18 0.00 46.03 2.71
429 430 4.406069 CTTCACGGTGAAGCATAATTGTG 58.594 43.478 31.18 10.63 46.03 3.33
430 431 3.407698 TCACGGTGAAGCATAATTGTGT 58.592 40.909 8.68 0.00 0.00 3.72
431 432 3.818210 TCACGGTGAAGCATAATTGTGTT 59.182 39.130 8.68 0.00 0.00 3.32
432 433 4.277174 TCACGGTGAAGCATAATTGTGTTT 59.723 37.500 8.68 3.99 0.00 2.83
433 434 4.981674 CACGGTGAAGCATAATTGTGTTTT 59.018 37.500 0.74 0.60 0.00 2.43
434 435 5.116983 CACGGTGAAGCATAATTGTGTTTTC 59.883 40.000 0.74 9.32 0.00 2.29
435 436 5.218885 CGGTGAAGCATAATTGTGTTTTCA 58.781 37.500 15.16 15.16 0.00 2.69
436 437 5.343058 CGGTGAAGCATAATTGTGTTTTCAG 59.657 40.000 17.77 8.97 30.88 3.02
437 438 6.446318 GGTGAAGCATAATTGTGTTTTCAGA 58.554 36.000 17.77 2.90 30.88 3.27
438 439 6.922957 GGTGAAGCATAATTGTGTTTTCAGAA 59.077 34.615 17.77 2.41 37.48 3.02
439 440 7.437862 GGTGAAGCATAATTGTGTTTTCAGAAA 59.562 33.333 17.77 0.00 36.68 2.52
440 441 8.816144 GTGAAGCATAATTGTGTTTTCAGAAAA 58.184 29.630 17.77 4.06 36.68 2.29
441 442 9.033481 TGAAGCATAATTGTGTTTTCAGAAAAG 57.967 29.630 8.67 0.00 36.68 2.27
442 443 8.947055 AAGCATAATTGTGTTTTCAGAAAAGT 57.053 26.923 8.67 0.00 36.68 2.66
472 473 5.523013 ACACAAAATTTGTTTTCGTGTGG 57.477 34.783 8.85 0.00 43.23 4.17
473 474 5.230942 ACACAAAATTTGTTTTCGTGTGGA 58.769 33.333 8.85 0.00 43.23 4.02
474 475 5.347364 ACACAAAATTTGTTTTCGTGTGGAG 59.653 36.000 8.85 0.00 43.23 3.86
475 476 4.328712 ACAAAATTTGTTTTCGTGTGGAGC 59.671 37.500 5.41 0.00 42.22 4.70
476 477 3.791973 AATTTGTTTTCGTGTGGAGCA 57.208 38.095 0.00 0.00 0.00 4.26
477 478 4.320608 AATTTGTTTTCGTGTGGAGCAT 57.679 36.364 0.00 0.00 0.00 3.79
478 479 2.772568 TTGTTTTCGTGTGGAGCATG 57.227 45.000 0.00 0.00 35.47 4.06
479 480 0.950836 TGTTTTCGTGTGGAGCATGG 59.049 50.000 0.00 0.00 34.91 3.66
480 481 0.951558 GTTTTCGTGTGGAGCATGGT 59.048 50.000 0.00 0.00 34.91 3.55
481 482 1.336755 GTTTTCGTGTGGAGCATGGTT 59.663 47.619 0.00 0.00 34.91 3.67
482 483 0.950836 TTTCGTGTGGAGCATGGTTG 59.049 50.000 0.00 0.00 34.91 3.77
483 484 0.179032 TTCGTGTGGAGCATGGTTGT 60.179 50.000 0.00 0.00 34.91 3.32
484 485 0.884259 TCGTGTGGAGCATGGTTGTG 60.884 55.000 0.00 0.00 34.91 3.33
485 486 1.286880 GTGTGGAGCATGGTTGTGC 59.713 57.895 0.00 0.00 45.38 4.57
491 492 2.568090 GCATGGTTGTGCTTCCGG 59.432 61.111 0.00 0.00 41.82 5.14
495 496 0.958822 ATGGTTGTGCTTCCGGTTTC 59.041 50.000 0.00 0.00 0.00 2.78
497 498 1.029681 GGTTGTGCTTCCGGTTTCTT 58.970 50.000 0.00 0.00 0.00 2.52
513 514 8.562052 TCCGGTTTCTTGTTTTAGTTTCTATTC 58.438 33.333 0.00 0.00 0.00 1.75
530 531 5.708948 TCTATTCAATTTTGTTTCGCCCTG 58.291 37.500 0.00 0.00 0.00 4.45
535 536 4.568760 TCAATTTTGTTTCGCCCTGTTTTC 59.431 37.500 0.00 0.00 0.00 2.29
539 540 0.933047 GTTTCGCCCTGTTTTCGTGC 60.933 55.000 0.00 0.00 0.00 5.34
544 545 1.487482 GCCCTGTTTTCGTGCTTTTC 58.513 50.000 0.00 0.00 0.00 2.29
548 549 2.543653 CCTGTTTTCGTGCTTTTCTGGG 60.544 50.000 0.00 0.00 0.00 4.45
551 552 3.113322 GTTTTCGTGCTTTTCTGGGTTC 58.887 45.455 0.00 0.00 0.00 3.62
552 553 1.314730 TTCGTGCTTTTCTGGGTTCC 58.685 50.000 0.00 0.00 0.00 3.62
627 633 7.696872 GGATTTAGTTTCAAAGATCTAAACGCC 59.303 37.037 11.95 7.71 37.99 5.68
629 635 7.499321 TTAGTTTCAAAGATCTAAACGCCAA 57.501 32.000 11.95 6.93 37.99 4.52
639 645 4.902443 TCTAAACGCCAAAACACAATGA 57.098 36.364 0.00 0.00 0.00 2.57
641 647 5.218885 TCTAAACGCCAAAACACAATGATG 58.781 37.500 0.00 0.00 0.00 3.07
645 651 3.181482 ACGCCAAAACACAATGATGACAA 60.181 39.130 0.00 0.00 0.00 3.18
646 652 3.182173 CGCCAAAACACAATGATGACAAC 59.818 43.478 0.00 0.00 0.00 3.32
649 655 5.064452 GCCAAAACACAATGATGACAACAAA 59.936 36.000 0.00 0.00 0.00 2.83
664 670 3.587923 CAACAAATTGTGATTCGGGCAT 58.412 40.909 0.00 0.00 0.00 4.40
667 673 0.461135 AATTGTGATTCGGGCATGCC 59.539 50.000 29.47 29.47 0.00 4.40
695 701 4.826556 AGAGAAGGCAATAAGTGTCTCAC 58.173 43.478 0.00 0.00 43.11 3.51
696 702 3.935828 GAGAAGGCAATAAGTGTCTCACC 59.064 47.826 0.00 0.00 43.11 4.02
697 703 3.584848 AGAAGGCAATAAGTGTCTCACCT 59.415 43.478 0.00 0.00 43.11 4.00
699 705 5.426833 AGAAGGCAATAAGTGTCTCACCTAT 59.573 40.000 0.00 0.00 43.11 2.57
700 706 5.028549 AGGCAATAAGTGTCTCACCTATG 57.971 43.478 0.00 0.00 37.84 2.23
717 723 4.158394 ACCTATGATGTGCCATTTGTCAAC 59.842 41.667 0.00 0.00 0.00 3.18
720 726 0.961019 ATGTGCCATTTGTCAACGCT 59.039 45.000 0.00 0.00 0.00 5.07
726 732 2.742053 GCCATTTGTCAACGCTAGAGAA 59.258 45.455 0.00 0.00 0.00 2.87
728 734 3.997021 CCATTTGTCAACGCTAGAGAAGT 59.003 43.478 0.00 0.00 0.00 3.01
736 742 1.063806 CGCTAGAGAAGTGTGTGTGC 58.936 55.000 0.00 0.00 0.00 4.57
737 743 1.602920 CGCTAGAGAAGTGTGTGTGCA 60.603 52.381 0.00 0.00 0.00 4.57
739 745 2.681706 CTAGAGAAGTGTGTGTGCAGG 58.318 52.381 0.00 0.00 0.00 4.85
740 746 0.533755 AGAGAAGTGTGTGTGCAGGC 60.534 55.000 0.00 0.00 0.00 4.85
741 747 1.835483 GAGAAGTGTGTGTGCAGGCG 61.835 60.000 0.00 0.00 0.00 5.52
742 748 2.124736 AAGTGTGTGTGCAGGCGT 60.125 55.556 0.00 0.00 0.00 5.68
743 749 1.714899 GAAGTGTGTGTGCAGGCGTT 61.715 55.000 0.00 0.00 0.00 4.84
744 750 1.714899 AAGTGTGTGTGCAGGCGTTC 61.715 55.000 0.00 0.00 0.00 3.95
745 751 3.268603 TGTGTGTGCAGGCGTTCG 61.269 61.111 0.00 0.00 0.00 3.95
748 754 1.663388 TGTGTGCAGGCGTTCGTAG 60.663 57.895 0.00 0.00 0.00 3.51
755 761 2.183555 GGCGTTCGTAGGGGTGAG 59.816 66.667 0.00 0.00 0.00 3.51
757 763 1.445582 GCGTTCGTAGGGGTGAGTG 60.446 63.158 0.00 0.00 0.00 3.51
765 771 2.108168 GTAGGGGTGAGTGTATGCTCA 58.892 52.381 0.00 0.00 42.56 4.26
771 777 4.283467 GGGGTGAGTGTATGCTCATGTATA 59.717 45.833 0.00 0.00 45.81 1.47
791 797 9.692749 ATGTATATGAGTGACTTAATTGTACCG 57.307 33.333 0.00 0.00 0.00 4.02
792 798 7.650504 TGTATATGAGTGACTTAATTGTACCGC 59.349 37.037 0.00 0.00 0.00 5.68
793 799 4.260139 TGAGTGACTTAATTGTACCGCA 57.740 40.909 0.00 0.00 0.00 5.69
794 800 4.827692 TGAGTGACTTAATTGTACCGCAT 58.172 39.130 0.00 0.00 0.00 4.73
797 803 6.874664 TGAGTGACTTAATTGTACCGCATTTA 59.125 34.615 0.00 0.00 0.00 1.40
798 804 7.064134 TGAGTGACTTAATTGTACCGCATTTAG 59.936 37.037 0.00 0.00 0.00 1.85
799 805 7.101054 AGTGACTTAATTGTACCGCATTTAGA 58.899 34.615 0.00 0.00 0.00 2.10
851 857 6.514863 ACCTTTACCAGAGGTACCCTTAATA 58.485 40.000 8.74 0.00 45.50 0.98
853 859 7.630534 ACCTTTACCAGAGGTACCCTTAATAAT 59.369 37.037 8.74 0.00 45.50 1.28
854 860 9.162733 CCTTTACCAGAGGTACCCTTAATAATA 57.837 37.037 8.74 0.00 37.97 0.98
856 862 6.661304 ACCAGAGGTACCCTTAATAATACG 57.339 41.667 8.74 0.00 32.11 3.06
858 864 7.297614 ACCAGAGGTACCCTTAATAATACGTA 58.702 38.462 8.74 0.00 32.11 3.57
859 865 7.449704 ACCAGAGGTACCCTTAATAATACGTAG 59.550 40.741 8.74 0.00 32.11 3.51
861 867 8.854117 CAGAGGTACCCTTAATAATACGTAGTT 58.146 37.037 8.74 0.00 36.23 2.24
862 868 9.426534 AGAGGTACCCTTAATAATACGTAGTTT 57.573 33.333 8.74 0.00 36.23 2.66
893 899 8.076910 TGAGAAACACGGTACCCTTAATAATA 57.923 34.615 6.25 0.00 0.00 0.98
894 900 8.199449 TGAGAAACACGGTACCCTTAATAATAG 58.801 37.037 6.25 0.00 0.00 1.73
895 901 8.082672 AGAAACACGGTACCCTTAATAATAGT 57.917 34.615 6.25 0.00 0.00 2.12
897 903 7.422465 AACACGGTACCCTTAATAATAGTGA 57.578 36.000 6.25 0.00 0.00 3.41
898 904 7.607615 ACACGGTACCCTTAATAATAGTGAT 57.392 36.000 6.25 0.00 0.00 3.06
919 1034 0.905809 TCGAAGAAACCATCCCCGGA 60.906 55.000 0.73 0.00 0.00 5.14
1002 1123 1.600916 GTGGCTGGACTGGACCAAC 60.601 63.158 0.00 0.00 39.59 3.77
1004 1125 3.050275 GCTGGACTGGACCAACGC 61.050 66.667 0.00 0.00 39.59 4.84
1005 1126 2.743718 CTGGACTGGACCAACGCT 59.256 61.111 0.00 0.00 39.59 5.07
1006 1127 1.972198 CTGGACTGGACCAACGCTA 59.028 57.895 0.00 0.00 39.59 4.26
1011 1145 0.037232 ACTGGACCAACGCTAGCTTC 60.037 55.000 13.93 1.18 0.00 3.86
1242 1394 4.120589 GGTCTAGCTAGGGTTTTGATTCG 58.879 47.826 20.58 0.00 0.00 3.34
1247 1399 2.888594 CTAGGGTTTTGATTCGAGCGA 58.111 47.619 0.00 0.00 0.00 4.93
1270 1423 2.443016 CAGCCCCCTAGCTCGACT 60.443 66.667 0.00 0.00 42.61 4.18
1344 1497 1.808411 GCTGGGATTGACAGTTCGAA 58.192 50.000 0.00 0.00 38.22 3.71
1346 1499 2.766313 CTGGGATTGACAGTTCGAACA 58.234 47.619 28.78 9.36 0.00 3.18
1380 1533 1.024579 AGTGCGGCGGATTTAGGTTG 61.025 55.000 9.78 0.00 0.00 3.77
1389 1542 3.425404 CGGATTTAGGTTGCAATTCGTG 58.575 45.455 0.59 0.00 0.00 4.35
1390 1543 3.730662 CGGATTTAGGTTGCAATTCGTGG 60.731 47.826 0.59 0.00 0.00 4.94
1400 1553 1.228552 AATTCGTGGCTTGCTGGGT 60.229 52.632 0.00 0.00 0.00 4.51
1464 1617 0.800012 TGCGCTCGTGGGTTAAATTC 59.200 50.000 9.73 0.00 0.00 2.17
1486 1639 3.288454 AGATGCAGATAGGAGGGGATT 57.712 47.619 0.00 0.00 0.00 3.01
1525 1678 5.835280 CCTAGCCTATGATTTGATTGGGTTT 59.165 40.000 0.00 0.00 32.31 3.27
1569 1722 0.411452 AGCAGGGGTCAGAAGAGAGA 59.589 55.000 0.00 0.00 0.00 3.10
1589 1742 5.104569 AGAGAAGATTTGGGAGGAAGATGAC 60.105 44.000 0.00 0.00 0.00 3.06
1604 1757 2.311542 AGATGACAGAGAGGAGGACACT 59.688 50.000 0.00 0.00 0.00 3.55
1605 1758 1.916506 TGACAGAGAGGAGGACACTG 58.083 55.000 0.00 0.00 35.14 3.66
1702 1891 4.949121 AGTCAGGGTTAGGATCTACAGTT 58.051 43.478 0.00 0.00 0.00 3.16
1740 1929 2.509964 ACCTCCTGGTTCTTGTCAGTTT 59.490 45.455 0.00 0.00 46.05 2.66
1741 1930 2.880890 CCTCCTGGTTCTTGTCAGTTTG 59.119 50.000 0.00 0.00 0.00 2.93
1779 1968 4.021456 GGGTTGAATTCGTTTTTCCTGGAT 60.021 41.667 0.00 0.00 0.00 3.41
1783 1972 6.737254 TGAATTCGTTTTTCCTGGATACTC 57.263 37.500 0.00 0.00 37.61 2.59
1816 2006 3.695830 TCCCAAATAGTGTGTCCTGAC 57.304 47.619 0.00 0.00 0.00 3.51
1852 2043 3.005155 GCTCACAAGTTCTTTCCAAGCAT 59.995 43.478 0.00 0.00 0.00 3.79
1873 2064 3.339253 TGCTTATGCACAGTGTGATCT 57.661 42.857 27.37 12.03 45.31 2.75
2172 2385 2.154462 CCTTTTGATGCAGGTCGTTCT 58.846 47.619 0.00 0.00 0.00 3.01
2283 2497 1.672854 TAGGCGTGCACTTAGGCGAT 61.673 55.000 16.19 5.75 36.28 4.58
2502 2719 3.973657 CAGGCATGTTATCTGCATTTCC 58.026 45.455 0.00 0.00 41.47 3.13
2524 2741 1.203052 CCCTTACAGTTGGCAGCATTG 59.797 52.381 3.63 0.00 0.00 2.82
2781 3004 1.690633 ATGCGTGGGAGATCAGGGT 60.691 57.895 0.00 0.00 0.00 4.34
2972 3195 6.579865 AGCAGTAGTAACAGTGTTGTTTACT 58.420 36.000 18.90 17.50 45.01 2.24
3028 3251 1.144503 GATCATGTGGAGGGGCAGAAT 59.855 52.381 0.00 0.00 0.00 2.40
3162 3385 3.569277 CCACCTGTTCATCAAACACATGA 59.431 43.478 0.00 0.00 42.95 3.07
3220 3443 4.220382 TCCTTGCAATTTTATGTGTCTGGG 59.780 41.667 0.00 0.00 0.00 4.45
3247 3470 1.001860 GGCACTGAAGCAAGAGTCTCT 59.998 52.381 0.00 0.00 35.83 3.10
3325 3548 6.860790 TGGTACATGAGACACTAATGGTTA 57.139 37.500 0.00 0.00 0.00 2.85
3354 3577 1.370609 CAATGTGCTGCTCCTCAGAG 58.629 55.000 0.00 0.00 45.72 3.35
3389 3612 1.601759 CCAGTGGTGTGCTTCTGGG 60.602 63.158 0.00 0.00 42.38 4.45
3648 3874 2.768698 TGCTGGTCATTTGGCATTTTG 58.231 42.857 0.00 0.00 0.00 2.44
3796 4022 7.013655 CCAATGAGGATATAAAGGTTGGTGAAG 59.986 40.741 0.00 0.00 41.22 3.02
3975 4201 3.986277 ACTCTTTTGGCATTTCAGCTTG 58.014 40.909 0.00 0.00 34.17 4.01
3980 4206 3.648339 TTGGCATTTCAGCTTGAAGTC 57.352 42.857 0.00 0.00 37.70 3.01
4000 4226 8.206867 TGAAGTCTTGAGCATATTTAGCATACT 58.793 33.333 0.00 0.00 0.00 2.12
4088 4579 6.564328 ACTTCACCTTGAATGAAAAGTTCAC 58.436 36.000 0.00 0.00 43.48 3.18
4163 4655 8.090831 GCTTTCAGAGGATATTGAAACCTTTTT 58.909 33.333 0.00 0.00 38.12 1.94
4372 4866 3.656559 TCTAAGTGTTGGCGAGGTAAAC 58.343 45.455 0.00 0.00 0.00 2.01
4413 4907 9.905713 AGTTCTTGTTTGCATATCCTTATTCTA 57.094 29.630 0.00 0.00 0.00 2.10
4451 4947 5.805728 AGCCTACTTTGTAGCTGTTGTTAT 58.194 37.500 0.00 0.00 33.41 1.89
4461 5591 5.411361 TGTAGCTGTTGTTATTGGACATCAC 59.589 40.000 0.00 0.00 0.00 3.06
4480 5610 2.548057 CACTTGTATTGGTGTGCGTCTT 59.452 45.455 0.00 0.00 0.00 3.01
4491 5621 1.068895 TGTGCGTCTTTTAACGAGGGA 59.931 47.619 0.00 0.00 45.37 4.20
4499 5629 5.344396 CGTCTTTTAACGAGGGAGACTTAAC 59.656 44.000 0.00 0.00 45.37 2.01
4544 5706 9.654417 GTCTAGTATTTAGCTAGTTTCTTCTCG 57.346 37.037 0.00 0.00 37.69 4.04
4567 5729 5.404066 CGTATTTTTACCTTGGGTGCAAAAG 59.596 40.000 0.00 0.00 34.75 2.27
4590 5752 3.221771 TGGTTGAATGCATGCCTATACC 58.778 45.455 16.68 15.76 0.00 2.73
4940 6103 8.825745 GTGAGTGAAAATTTCAAATTTGCCTAA 58.174 29.630 13.54 7.79 42.15 2.69
5003 6169 1.270839 ACCAGAAGTGTGTTCGATGGG 60.271 52.381 1.39 0.00 0.00 4.00
5118 6284 2.685017 TGGATCACCGCTCTGCCT 60.685 61.111 0.00 0.00 39.42 4.75
5119 6285 2.107953 GGATCACCGCTCTGCCTC 59.892 66.667 0.00 0.00 0.00 4.70
5120 6286 2.725312 GGATCACCGCTCTGCCTCA 61.725 63.158 0.00 0.00 0.00 3.86
5121 6287 1.227205 GATCACCGCTCTGCCTCAG 60.227 63.158 0.00 0.00 0.00 3.35
5122 6288 3.382803 ATCACCGCTCTGCCTCAGC 62.383 63.158 0.00 0.00 40.48 4.26
5322 6490 4.699637 TGAAGTTCGATTACCACAAGTGT 58.300 39.130 0.00 0.00 0.00 3.55
5431 6600 6.065374 TGTTTCCTGTTAAACTCCTGCATTA 58.935 36.000 0.00 0.00 39.57 1.90
5439 6608 2.561478 ACTCCTGCATTACAAACGGT 57.439 45.000 0.00 0.00 0.00 4.83
5448 6617 6.293516 CCTGCATTACAAACGGTTGTTAACTA 60.294 38.462 26.03 2.25 46.01 2.24
5616 6785 9.912634 TTTGAGGTAAAGCTTCTAATGATTTTG 57.087 29.630 0.00 0.00 0.00 2.44
5617 6786 8.862325 TGAGGTAAAGCTTCTAATGATTTTGA 57.138 30.769 0.00 0.00 0.00 2.69
5702 6871 6.631238 CCTTGTGTCGTTGTTTGTATTGTTAG 59.369 38.462 0.00 0.00 0.00 2.34
5706 6875 5.294799 TGTCGTTGTTTGTATTGTTAGCTGT 59.705 36.000 0.00 0.00 0.00 4.40
5733 6902 6.665992 TTACCAGCAATACTAGGACCTATG 57.334 41.667 0.46 0.00 0.00 2.23
5811 6980 7.338800 AGTGAGCATTTTCTTTCTTTCAAGA 57.661 32.000 0.00 0.00 0.00 3.02
5812 6981 7.775120 AGTGAGCATTTTCTTTCTTTCAAGAA 58.225 30.769 0.00 0.00 42.91 2.52
5848 7039 4.525487 ACAAAAGGTTCAGATCATGCATGT 59.475 37.500 25.43 13.42 0.00 3.21
5891 7082 2.648143 CCATGTTGCCCGTGCCATT 61.648 57.895 0.00 0.00 36.33 3.16
5917 7108 8.407832 TGGACAAATTGCTATTTCAGATGTATG 58.592 33.333 2.98 0.00 31.63 2.39
5991 7182 7.162082 ACAGGAATTGTTGTGTTTGGTTTTAA 58.838 30.769 0.00 0.00 36.31 1.52
6036 7227 1.568504 TCTGCCGTTCCAGTAATCCT 58.431 50.000 0.00 0.00 34.47 3.24
6129 7320 1.819229 CTATGCTCCGTCACAGGCT 59.181 57.895 0.00 0.00 0.00 4.58
6355 7558 4.184649 TGTATCAGACTGGGAGCAGATA 57.815 45.455 1.81 0.00 0.00 1.98
6432 7638 3.519510 AGCTCTTAGATGTTGTTGCCCTA 59.480 43.478 0.00 0.00 0.00 3.53
6544 7750 4.286032 TGGCTAGTTTGTGGTCTAGATGTT 59.714 41.667 0.00 0.00 36.66 2.71
6556 7762 4.621886 GGTCTAGATGTTGTCTTTGACGTC 59.378 45.833 9.11 9.11 38.74 4.34
6599 7805 0.388659 ATTTCGCTGTGGCTGCAAAA 59.611 45.000 0.50 0.00 36.09 2.44
6603 7809 0.179156 CGCTGTGGCTGCAAAATAGG 60.179 55.000 0.50 0.00 36.09 2.57
6667 7873 0.177141 GCCATGTCGGTAAGCACCTA 59.823 55.000 0.00 0.00 43.33 3.08
6683 7889 4.158394 AGCACCTATGTACCAAAATGCAAG 59.842 41.667 10.10 0.00 34.27 4.01
6741 7951 9.734984 AATACCTTACATTTTATTATCGAGGGG 57.265 33.333 0.00 0.00 0.00 4.79
6744 7954 7.718314 ACCTTACATTTTATTATCGAGGGGAAC 59.282 37.037 0.00 0.00 0.00 3.62
6806 8016 4.911390 ACCAGCAGTAAAGATTGCTTAGT 58.089 39.130 0.00 0.00 45.68 2.24
6807 8017 4.697352 ACCAGCAGTAAAGATTGCTTAGTG 59.303 41.667 0.00 0.00 45.68 2.74
6811 8021 6.003950 AGCAGTAAAGATTGCTTAGTGGAAA 58.996 36.000 0.00 0.00 45.68 3.13
6847 8058 0.372334 GCACGCATGGGTAAGTTACG 59.628 55.000 15.82 2.47 0.00 3.18
6859 8070 1.797025 AAGTTACGAGGTTCAGCTGC 58.203 50.000 9.47 0.00 0.00 5.25
6878 8090 8.023128 TCAGCTGCTAAAGTGAAATAAAACATC 58.977 33.333 9.47 0.00 0.00 3.06
6884 8096 7.062255 GCTAAAGTGAAATAAAACATCAGGCAC 59.938 37.037 0.00 0.00 0.00 5.01
6916 8128 4.627035 GCTACATTTTCTGATTTTGGTGGC 59.373 41.667 0.00 0.00 0.00 5.01
6934 8146 2.094182 TGGCGAGGAGTGAAACATAGAC 60.094 50.000 0.00 0.00 41.43 2.59
6937 8149 4.246458 GCGAGGAGTGAAACATAGACTTT 58.754 43.478 0.00 0.00 41.43 2.66
6943 8155 7.974504 AGGAGTGAAACATAGACTTTTCCTTA 58.025 34.615 0.00 0.00 41.43 2.69
6947 8159 8.429641 AGTGAAACATAGACTTTTCCTTACTGA 58.570 33.333 0.00 0.00 41.43 3.41
6952 8164 9.495572 AACATAGACTTTTCCTTACTGAAGAAG 57.504 33.333 0.00 0.00 34.25 2.85
6954 8166 9.364989 CATAGACTTTTCCTTACTGAAGAAGAG 57.635 37.037 0.00 0.00 34.25 2.85
6956 8168 6.555360 AGACTTTTCCTTACTGAAGAAGAGGA 59.445 38.462 0.00 0.00 34.25 3.71
7081 8320 2.409870 GCCCATTTGCGAGACCCAG 61.410 63.158 0.00 0.00 0.00 4.45
7160 8402 5.419542 GTGGCCTGTTTCTTTCTTTCTTTT 58.580 37.500 3.32 0.00 0.00 2.27
7161 8403 5.291858 GTGGCCTGTTTCTTTCTTTCTTTTG 59.708 40.000 3.32 0.00 0.00 2.44
7162 8404 5.186797 TGGCCTGTTTCTTTCTTTCTTTTGA 59.813 36.000 3.32 0.00 0.00 2.69
7226 8483 1.737363 GCGCAACTTCTCCAGAGGTAG 60.737 57.143 0.30 0.00 32.93 3.18
7253 8510 4.037327 CCTAGATCGATCTGCTTCTGTTCA 59.963 45.833 33.22 11.85 37.76 3.18
7254 8511 4.462508 AGATCGATCTGCTTCTGTTCAA 57.537 40.909 26.78 0.00 35.42 2.69
7255 8512 4.431809 AGATCGATCTGCTTCTGTTCAAG 58.568 43.478 26.78 0.00 35.42 3.02
7256 8513 3.667497 TCGATCTGCTTCTGTTCAAGT 57.333 42.857 0.00 0.00 0.00 3.16
7257 8514 3.320626 TCGATCTGCTTCTGTTCAAGTG 58.679 45.455 0.00 0.00 0.00 3.16
7259 8516 1.220529 TCTGCTTCTGTTCAAGTGCG 58.779 50.000 0.00 0.00 32.05 5.34
7338 8650 3.339731 GCAGGCGCTACACACAAA 58.660 55.556 7.64 0.00 34.30 2.83
7341 8872 1.335872 GCAGGCGCTACACACAAAAAT 60.336 47.619 7.64 0.00 34.30 1.82
7348 8879 5.025826 GCGCTACACACAAAAATATGTACC 58.974 41.667 0.00 0.00 30.84 3.34
7349 8880 5.163794 GCGCTACACACAAAAATATGTACCT 60.164 40.000 0.00 0.00 30.84 3.08
7352 8883 5.291293 ACACACAAAAATATGTACCTCGC 57.709 39.130 0.00 0.00 30.84 5.03
7363 8894 4.906065 ATGTACCTCGCTAATCACGTAA 57.094 40.909 0.00 0.00 0.00 3.18
7390 8926 9.696917 AAAAGCACTCCATTAATTAGTTTCTTG 57.303 29.630 10.06 0.00 0.00 3.02
7391 8927 7.396540 AGCACTCCATTAATTAGTTTCTTGG 57.603 36.000 0.00 0.00 0.00 3.61
7393 8929 7.836183 AGCACTCCATTAATTAGTTTCTTGGAT 59.164 33.333 0.00 0.00 31.57 3.41
7394 8930 9.120538 GCACTCCATTAATTAGTTTCTTGGATA 57.879 33.333 0.00 0.00 31.57 2.59
7398 8934 9.416284 TCCATTAATTAGTTTCTTGGATAACCC 57.584 33.333 0.00 0.00 34.81 4.11
7399 8935 9.421399 CCATTAATTAGTTTCTTGGATAACCCT 57.579 33.333 0.00 0.00 35.38 4.34
7404 8940 9.462606 AATTAGTTTCTTGGATAACCCTACTTG 57.537 33.333 0.00 0.00 35.38 3.16
7438 9766 5.592282 TGACAATGTTGACAATACTGGTTGT 59.408 36.000 0.00 0.70 44.53 3.32
7447 9775 5.452078 ACAATACTGGTTGTCAAATGTGG 57.548 39.130 0.00 0.00 37.80 4.17
7448 9776 4.280677 ACAATACTGGTTGTCAAATGTGGG 59.719 41.667 0.00 0.00 37.80 4.61
7449 9777 1.703411 ACTGGTTGTCAAATGTGGGG 58.297 50.000 0.00 0.00 0.00 4.96
7450 9778 0.968405 CTGGTTGTCAAATGTGGGGG 59.032 55.000 0.00 0.00 0.00 5.40
7451 9779 1.118356 TGGTTGTCAAATGTGGGGGC 61.118 55.000 0.00 0.00 0.00 5.80
7452 9780 1.671166 GTTGTCAAATGTGGGGGCC 59.329 57.895 0.00 0.00 0.00 5.80
7453 9781 1.118356 GTTGTCAAATGTGGGGGCCA 61.118 55.000 4.39 0.00 0.00 5.36
7462 9790 2.611667 TGGGGGCCACACATGTTT 59.388 55.556 3.04 0.00 0.00 2.83
7463 9791 1.074926 TGGGGGCCACACATGTTTT 60.075 52.632 3.04 0.00 0.00 2.43
7464 9792 1.118356 TGGGGGCCACACATGTTTTC 61.118 55.000 3.04 0.00 0.00 2.29
7465 9793 1.671166 GGGGCCACACATGTTTTCC 59.329 57.895 4.39 0.00 0.00 3.13
7466 9794 1.671166 GGGCCACACATGTTTTCCC 59.329 57.895 4.39 0.70 0.00 3.97
7467 9795 1.671166 GGCCACACATGTTTTCCCC 59.329 57.895 0.00 0.00 0.00 4.81
7468 9796 0.831711 GGCCACACATGTTTTCCCCT 60.832 55.000 0.00 0.00 0.00 4.79
7469 9797 1.047801 GCCACACATGTTTTCCCCTT 58.952 50.000 0.00 0.00 0.00 3.95
7470 9798 1.000843 GCCACACATGTTTTCCCCTTC 59.999 52.381 0.00 0.00 0.00 3.46
7471 9799 2.597455 CCACACATGTTTTCCCCTTCT 58.403 47.619 0.00 0.00 0.00 2.85
7472 9800 2.558359 CCACACATGTTTTCCCCTTCTC 59.442 50.000 0.00 0.00 0.00 2.87
7473 9801 3.490348 CACACATGTTTTCCCCTTCTCT 58.510 45.455 0.00 0.00 0.00 3.10
7474 9802 3.503748 CACACATGTTTTCCCCTTCTCTC 59.496 47.826 0.00 0.00 0.00 3.20
7475 9803 3.395941 ACACATGTTTTCCCCTTCTCTCT 59.604 43.478 0.00 0.00 0.00 3.10
7476 9804 4.006319 CACATGTTTTCCCCTTCTCTCTC 58.994 47.826 0.00 0.00 0.00 3.20
7477 9805 3.652869 ACATGTTTTCCCCTTCTCTCTCA 59.347 43.478 0.00 0.00 0.00 3.27
7478 9806 4.290722 ACATGTTTTCCCCTTCTCTCTCAT 59.709 41.667 0.00 0.00 0.00 2.90
7479 9807 4.559862 TGTTTTCCCCTTCTCTCTCATC 57.440 45.455 0.00 0.00 0.00 2.92
7480 9808 4.171234 TGTTTTCCCCTTCTCTCTCATCT 58.829 43.478 0.00 0.00 0.00 2.90
7481 9809 4.223923 TGTTTTCCCCTTCTCTCTCATCTC 59.776 45.833 0.00 0.00 0.00 2.75
7482 9810 4.344938 TTTCCCCTTCTCTCTCATCTCT 57.655 45.455 0.00 0.00 0.00 3.10
7483 9811 3.593442 TCCCCTTCTCTCTCATCTCTC 57.407 52.381 0.00 0.00 0.00 3.20
7484 9812 2.176798 TCCCCTTCTCTCTCATCTCTCC 59.823 54.545 0.00 0.00 0.00 3.71
7485 9813 2.177669 CCCCTTCTCTCTCATCTCTCCT 59.822 54.545 0.00 0.00 0.00 3.69
7486 9814 3.490348 CCCTTCTCTCTCATCTCTCCTC 58.510 54.545 0.00 0.00 0.00 3.71
7487 9815 3.139025 CCCTTCTCTCTCATCTCTCCTCT 59.861 52.174 0.00 0.00 0.00 3.69
7488 9816 4.386761 CCCTTCTCTCTCATCTCTCCTCTT 60.387 50.000 0.00 0.00 0.00 2.85
7489 9817 4.823989 CCTTCTCTCTCATCTCTCCTCTTC 59.176 50.000 0.00 0.00 0.00 2.87
7490 9818 4.437682 TCTCTCTCATCTCTCCTCTTCC 57.562 50.000 0.00 0.00 0.00 3.46
7491 9819 4.047166 TCTCTCTCATCTCTCCTCTTCCT 58.953 47.826 0.00 0.00 0.00 3.36
7492 9820 4.103153 TCTCTCTCATCTCTCCTCTTCCTC 59.897 50.000 0.00 0.00 0.00 3.71
7493 9821 3.138283 TCTCTCATCTCTCCTCTTCCTCC 59.862 52.174 0.00 0.00 0.00 4.30
7494 9822 3.130450 TCTCATCTCTCCTCTTCCTCCT 58.870 50.000 0.00 0.00 0.00 3.69
7495 9823 3.117550 TCTCATCTCTCCTCTTCCTCCTG 60.118 52.174 0.00 0.00 0.00 3.86
7496 9824 2.091389 TCATCTCTCCTCTTCCTCCTGG 60.091 54.545 0.00 0.00 0.00 4.45
7497 9825 1.388174 TCTCTCCTCTTCCTCCTGGT 58.612 55.000 0.00 0.00 34.23 4.00
7498 9826 1.006519 TCTCTCCTCTTCCTCCTGGTG 59.993 57.143 0.00 0.00 34.23 4.17
7499 9827 0.041833 TCTCCTCTTCCTCCTGGTGG 59.958 60.000 8.53 8.53 34.23 4.61
7500 9828 0.980231 CTCCTCTTCCTCCTGGTGGG 60.980 65.000 14.48 8.32 34.23 4.61
7501 9829 1.997874 CCTCTTCCTCCTGGTGGGG 60.998 68.421 14.48 8.30 35.33 4.96
7502 9830 2.610859 TCTTCCTCCTGGTGGGGC 60.611 66.667 14.48 0.00 35.33 5.80
7503 9831 2.612115 CTTCCTCCTGGTGGGGCT 60.612 66.667 14.48 0.00 35.33 5.19
7504 9832 2.610859 TTCCTCCTGGTGGGGCTC 60.611 66.667 14.48 0.00 35.33 4.70
7505 9833 3.498961 TTCCTCCTGGTGGGGCTCA 62.499 63.158 14.48 0.00 35.33 4.26
7506 9834 2.693864 CCTCCTGGTGGGGCTCAT 60.694 66.667 6.91 0.00 35.33 2.90
7507 9835 2.593978 CTCCTGGTGGGGCTCATG 59.406 66.667 0.00 0.00 35.33 3.07
7508 9836 3.711059 CTCCTGGTGGGGCTCATGC 62.711 68.421 0.00 0.00 38.76 4.06
7509 9837 4.051167 CCTGGTGGGGCTCATGCA 62.051 66.667 0.00 0.00 41.91 3.96
7510 9838 2.753043 CTGGTGGGGCTCATGCAC 60.753 66.667 0.00 0.00 43.08 4.57
7511 9839 3.572447 CTGGTGGGGCTCATGCACA 62.572 63.158 0.00 0.00 46.28 4.57
7512 9840 3.064324 GGTGGGGCTCATGCACAC 61.064 66.667 0.00 0.00 46.28 3.82
7513 9841 3.434319 GTGGGGCTCATGCACACG 61.434 66.667 0.00 0.00 46.28 4.49
7514 9842 3.952508 TGGGGCTCATGCACACGT 61.953 61.111 0.00 0.00 46.28 4.49
7515 9843 3.434319 GGGGCTCATGCACACGTG 61.434 66.667 15.48 15.48 46.28 4.49
7516 9844 3.434319 GGGCTCATGCACACGTGG 61.434 66.667 21.57 10.05 43.35 4.94
7517 9845 4.107051 GGCTCATGCACACGTGGC 62.107 66.667 21.57 19.77 41.91 5.01
7518 9846 4.107051 GCTCATGCACACGTGGCC 62.107 66.667 21.57 10.58 39.41 5.36
7519 9847 3.792047 CTCATGCACACGTGGCCG 61.792 66.667 21.57 13.41 40.83 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.676947 AGCAAGTTTTAGAGGTACAATCAGTA 58.323 34.615 0.00 0.00 0.00 2.74
1 2 6.534634 AGCAAGTTTTAGAGGTACAATCAGT 58.465 36.000 0.00 0.00 0.00 3.41
100 101 2.238646 ACTTGTATTCCAATGCCTCGGA 59.761 45.455 0.00 0.00 31.20 4.55
123 124 8.138928 TCATCAAGGAAATCAGAGAAGTTCTA 57.861 34.615 5.09 0.00 33.83 2.10
135 136 6.516718 TCGAGAGGTATTCATCAAGGAAATC 58.483 40.000 0.00 0.00 0.00 2.17
199 200 7.667219 TGATTAGTTGCCTCAGATTTCTTTCTT 59.333 33.333 0.00 0.00 0.00 2.52
209 210 2.354704 CCCGTTGATTAGTTGCCTCAGA 60.355 50.000 0.00 0.00 0.00 3.27
211 212 1.349688 ACCCGTTGATTAGTTGCCTCA 59.650 47.619 0.00 0.00 0.00 3.86
213 214 2.355412 GGTACCCGTTGATTAGTTGCCT 60.355 50.000 0.00 0.00 0.00 4.75
239 240 2.038975 TCCGCTACAGGAAGCCCT 59.961 61.111 0.00 0.00 45.74 5.19
241 242 2.978824 TGTCCGCTACAGGAAGCC 59.021 61.111 0.00 0.00 42.77 4.35
248 249 0.105964 AAGCACAACTGTCCGCTACA 59.894 50.000 0.00 0.00 33.45 2.74
256 257 3.885297 AGCATAGTTTGAAGCACAACTGT 59.115 39.130 0.00 0.00 38.29 3.55
260 261 5.299028 TCAAGAAGCATAGTTTGAAGCACAA 59.701 36.000 0.00 0.00 36.65 3.33
261 262 4.821260 TCAAGAAGCATAGTTTGAAGCACA 59.179 37.500 0.00 0.00 0.00 4.57
263 264 6.389830 TTTCAAGAAGCATAGTTTGAAGCA 57.610 33.333 0.00 0.00 39.74 3.91
264 265 6.920210 ACTTTTCAAGAAGCATAGTTTGAAGC 59.080 34.615 0.00 0.00 39.74 3.86
265 266 8.131100 TCACTTTTCAAGAAGCATAGTTTGAAG 58.869 33.333 0.00 0.00 39.74 3.02
266 267 7.995289 TCACTTTTCAAGAAGCATAGTTTGAA 58.005 30.769 0.00 0.00 37.66 2.69
267 268 7.566760 TCACTTTTCAAGAAGCATAGTTTGA 57.433 32.000 0.00 0.00 0.00 2.69
268 269 8.633075 TTTCACTTTTCAAGAAGCATAGTTTG 57.367 30.769 0.00 0.00 0.00 2.93
269 270 7.922811 CCTTTCACTTTTCAAGAAGCATAGTTT 59.077 33.333 0.00 0.00 0.00 2.66
272 273 5.860716 GCCTTTCACTTTTCAAGAAGCATAG 59.139 40.000 0.00 0.00 0.00 2.23
273 274 5.301551 TGCCTTTCACTTTTCAAGAAGCATA 59.698 36.000 0.00 0.00 0.00 3.14
274 275 4.099881 TGCCTTTCACTTTTCAAGAAGCAT 59.900 37.500 0.00 0.00 0.00 3.79
276 277 4.045636 TGCCTTTCACTTTTCAAGAAGC 57.954 40.909 0.00 0.00 0.00 3.86
277 278 5.860716 GCTATGCCTTTCACTTTTCAAGAAG 59.139 40.000 0.00 0.00 0.00 2.85
280 281 5.125100 TGCTATGCCTTTCACTTTTCAAG 57.875 39.130 0.00 0.00 0.00 3.02
282 283 5.163622 GCTATGCTATGCCTTTCACTTTTCA 60.164 40.000 0.00 0.00 0.00 2.69
284 285 4.952335 AGCTATGCTATGCCTTTCACTTTT 59.048 37.500 0.00 0.00 36.99 2.27
285 286 4.530875 AGCTATGCTATGCCTTTCACTTT 58.469 39.130 0.00 0.00 36.99 2.66
286 287 4.162040 AGCTATGCTATGCCTTTCACTT 57.838 40.909 0.00 0.00 36.99 3.16
287 288 3.853355 AGCTATGCTATGCCTTTCACT 57.147 42.857 0.00 0.00 36.99 3.41
301 302 5.923114 AGATTTGTCGTGTAGCATAGCTATG 59.077 40.000 26.42 26.42 43.30 2.23
302 303 6.090483 AGATTTGTCGTGTAGCATAGCTAT 57.910 37.500 0.00 0.00 43.30 2.97
304 305 4.142160 TGAGATTTGTCGTGTAGCATAGCT 60.142 41.667 0.00 0.00 43.41 3.32
305 306 4.026475 GTGAGATTTGTCGTGTAGCATAGC 60.026 45.833 0.00 0.00 0.00 2.97
306 307 5.102313 TGTGAGATTTGTCGTGTAGCATAG 58.898 41.667 0.00 0.00 0.00 2.23
307 308 5.066968 TGTGAGATTTGTCGTGTAGCATA 57.933 39.130 0.00 0.00 0.00 3.14
308 309 3.925379 TGTGAGATTTGTCGTGTAGCAT 58.075 40.909 0.00 0.00 0.00 3.79
309 310 3.378911 TGTGAGATTTGTCGTGTAGCA 57.621 42.857 0.00 0.00 0.00 3.49
310 311 3.679980 ACATGTGAGATTTGTCGTGTAGC 59.320 43.478 0.00 0.00 0.00 3.58
311 312 6.093404 AGTACATGTGAGATTTGTCGTGTAG 58.907 40.000 9.11 0.00 34.43 2.74
312 313 6.020971 AGTACATGTGAGATTTGTCGTGTA 57.979 37.500 9.11 0.00 33.15 2.90
313 314 4.883083 AGTACATGTGAGATTTGTCGTGT 58.117 39.130 9.11 0.00 34.91 4.49
314 315 5.635280 AGAAGTACATGTGAGATTTGTCGTG 59.365 40.000 9.11 0.00 0.00 4.35
315 316 5.784177 AGAAGTACATGTGAGATTTGTCGT 58.216 37.500 9.11 0.00 0.00 4.34
316 317 5.003872 CGAGAAGTACATGTGAGATTTGTCG 59.996 44.000 9.11 7.93 0.00 4.35
317 318 6.093404 TCGAGAAGTACATGTGAGATTTGTC 58.907 40.000 9.11 0.00 0.00 3.18
318 319 6.025749 TCGAGAAGTACATGTGAGATTTGT 57.974 37.500 9.11 0.00 0.00 2.83
319 320 6.951256 TTCGAGAAGTACATGTGAGATTTG 57.049 37.500 9.11 0.00 0.00 2.32
320 321 7.657761 ACTTTTCGAGAAGTACATGTGAGATTT 59.342 33.333 18.90 0.00 38.06 2.17
321 322 7.116948 CACTTTTCGAGAAGTACATGTGAGATT 59.883 37.037 19.76 0.00 37.76 2.40
322 323 6.587990 CACTTTTCGAGAAGTACATGTGAGAT 59.412 38.462 19.76 0.00 37.76 2.75
323 324 5.920840 CACTTTTCGAGAAGTACATGTGAGA 59.079 40.000 19.76 0.00 37.76 3.27
324 325 5.920840 TCACTTTTCGAGAAGTACATGTGAG 59.079 40.000 19.76 6.61 37.76 3.51
325 326 5.838529 TCACTTTTCGAGAAGTACATGTGA 58.161 37.500 19.76 10.75 37.76 3.58
326 327 6.525121 TTCACTTTTCGAGAAGTACATGTG 57.475 37.500 19.76 8.72 37.76 3.21
327 328 7.548196 TTTTCACTTTTCGAGAAGTACATGT 57.452 32.000 19.76 2.69 37.76 3.21
356 357 1.945394 CAACTTTCTGAGCACAGCTGT 59.055 47.619 15.25 15.25 39.88 4.40
357 358 1.945394 ACAACTTTCTGAGCACAGCTG 59.055 47.619 13.48 13.48 39.88 4.24
358 359 1.945394 CACAACTTTCTGAGCACAGCT 59.055 47.619 6.24 0.00 43.88 4.24
359 360 1.598924 GCACAACTTTCTGAGCACAGC 60.599 52.381 6.24 0.00 43.17 4.40
360 361 1.945394 AGCACAACTTTCTGAGCACAG 59.055 47.619 4.57 4.57 44.66 3.66
361 362 2.042686 AGCACAACTTTCTGAGCACA 57.957 45.000 0.00 0.00 35.60 4.57
362 363 2.615912 AGAAGCACAACTTTCTGAGCAC 59.384 45.455 0.00 0.00 39.29 4.40
363 364 2.874701 GAGAAGCACAACTTTCTGAGCA 59.125 45.455 0.00 0.00 39.29 4.26
364 365 2.096516 CGAGAAGCACAACTTTCTGAGC 60.097 50.000 0.00 0.00 39.29 4.26
365 366 3.384668 TCGAGAAGCACAACTTTCTGAG 58.615 45.455 0.00 0.00 39.29 3.35
366 367 3.452755 TCGAGAAGCACAACTTTCTGA 57.547 42.857 0.00 0.00 39.29 3.27
367 368 4.034510 ACTTTCGAGAAGCACAACTTTCTG 59.965 41.667 7.10 0.00 39.29 3.02
368 369 4.034510 CACTTTCGAGAAGCACAACTTTCT 59.965 41.667 7.10 0.00 39.29 2.52
369 370 4.034048 TCACTTTCGAGAAGCACAACTTTC 59.966 41.667 7.10 0.00 39.29 2.62
370 371 3.938963 TCACTTTCGAGAAGCACAACTTT 59.061 39.130 7.10 0.00 39.29 2.66
371 372 3.531538 TCACTTTCGAGAAGCACAACTT 58.468 40.909 7.10 0.00 42.98 2.66
372 373 3.179443 TCACTTTCGAGAAGCACAACT 57.821 42.857 7.10 0.00 0.00 3.16
373 374 3.944422 TTCACTTTCGAGAAGCACAAC 57.056 42.857 7.10 0.00 0.00 3.32
374 375 4.955925 TTTTCACTTTCGAGAAGCACAA 57.044 36.364 7.10 0.00 0.00 3.33
375 376 4.155099 TGTTTTTCACTTTCGAGAAGCACA 59.845 37.500 7.10 2.39 0.00 4.57
376 377 4.495828 GTGTTTTTCACTTTCGAGAAGCAC 59.504 41.667 7.10 0.00 43.13 4.40
377 378 4.155099 TGTGTTTTTCACTTTCGAGAAGCA 59.845 37.500 7.10 0.00 46.27 3.91
378 379 4.658071 TGTGTTTTTCACTTTCGAGAAGC 58.342 39.130 7.10 0.00 46.27 3.86
379 380 5.869350 ACTGTGTTTTTCACTTTCGAGAAG 58.131 37.500 5.99 5.99 46.27 2.85
380 381 5.873179 ACTGTGTTTTTCACTTTCGAGAA 57.127 34.783 0.00 0.00 46.27 2.87
381 382 5.180492 ACAACTGTGTTTTTCACTTTCGAGA 59.820 36.000 0.00 0.00 46.27 4.04
382 383 5.283717 CACAACTGTGTTTTTCACTTTCGAG 59.716 40.000 1.51 0.00 46.27 4.04
383 384 5.150683 CACAACTGTGTTTTTCACTTTCGA 58.849 37.500 1.51 0.00 46.27 3.71
384 385 5.420258 CACAACTGTGTTTTTCACTTTCG 57.580 39.130 1.51 0.00 46.27 3.46
385 386 5.405269 AAGCACAACTGTGTTTTTCACTTTC 59.595 36.000 11.31 0.00 45.08 2.62
386 387 5.296748 AAGCACAACTGTGTTTTTCACTTT 58.703 33.333 11.31 0.00 45.08 2.66
387 388 4.881920 AAGCACAACTGTGTTTTTCACTT 58.118 34.783 11.31 2.08 45.08 3.16
388 389 4.022416 TGAAGCACAACTGTGTTTTTCACT 60.022 37.500 12.37 0.00 46.83 3.41
389 390 4.089923 GTGAAGCACAACTGTGTTTTTCAC 59.910 41.667 24.23 24.23 46.83 3.18
390 391 4.233789 GTGAAGCACAACTGTGTTTTTCA 58.766 39.130 12.37 14.45 46.83 2.69
391 392 3.300590 CGTGAAGCACAACTGTGTTTTTC 59.699 43.478 12.37 12.58 46.83 2.29
392 393 3.241701 CGTGAAGCACAACTGTGTTTTT 58.758 40.909 12.37 5.12 46.83 1.94
393 394 2.415357 CCGTGAAGCACAACTGTGTTTT 60.415 45.455 12.37 7.25 46.83 2.43
397 398 3.821234 TTCACCGTGAAGCACAACTGTG 61.821 50.000 9.99 5.45 39.05 3.66
398 399 0.107897 TCACCGTGAAGCACAACTGT 60.108 50.000 0.00 0.00 33.40 3.55
399 400 1.003545 CTTCACCGTGAAGCACAACTG 60.004 52.381 24.62 3.81 46.03 3.16
400 401 1.299541 CTTCACCGTGAAGCACAACT 58.700 50.000 24.62 0.00 46.03 3.16
401 402 3.825812 CTTCACCGTGAAGCACAAC 57.174 52.632 24.62 0.00 46.03 3.32
408 409 3.818210 ACACAATTATGCTTCACCGTGAA 59.182 39.130 13.29 13.29 34.79 3.18
409 410 3.407698 ACACAATTATGCTTCACCGTGA 58.592 40.909 0.00 0.00 0.00 4.35
410 411 3.829886 ACACAATTATGCTTCACCGTG 57.170 42.857 0.00 0.00 0.00 4.94
411 412 4.846779 AAACACAATTATGCTTCACCGT 57.153 36.364 0.00 0.00 0.00 4.83
412 413 5.218885 TGAAAACACAATTATGCTTCACCG 58.781 37.500 0.00 0.00 0.00 4.94
413 414 6.446318 TCTGAAAACACAATTATGCTTCACC 58.554 36.000 0.00 0.00 0.00 4.02
414 415 7.928908 TTCTGAAAACACAATTATGCTTCAC 57.071 32.000 0.00 0.00 0.00 3.18
415 416 8.939201 TTTTCTGAAAACACAATTATGCTTCA 57.061 26.923 11.33 2.82 0.00 3.02
416 417 9.034544 ACTTTTCTGAAAACACAATTATGCTTC 57.965 29.630 11.33 0.00 0.00 3.86
417 418 8.947055 ACTTTTCTGAAAACACAATTATGCTT 57.053 26.923 11.33 0.00 0.00 3.91
452 453 4.328712 GCTCCACACGAAAACAAATTTTGT 59.671 37.500 8.97 8.97 44.81 2.83
453 454 4.328440 TGCTCCACACGAAAACAAATTTTG 59.672 37.500 7.59 7.59 38.17 2.44
454 455 4.499183 TGCTCCACACGAAAACAAATTTT 58.501 34.783 0.00 0.00 40.83 1.82
455 456 4.116747 TGCTCCACACGAAAACAAATTT 57.883 36.364 0.00 0.00 0.00 1.82
456 457 3.791973 TGCTCCACACGAAAACAAATT 57.208 38.095 0.00 0.00 0.00 1.82
457 458 3.552684 CCATGCTCCACACGAAAACAAAT 60.553 43.478 0.00 0.00 0.00 2.32
458 459 2.223688 CCATGCTCCACACGAAAACAAA 60.224 45.455 0.00 0.00 0.00 2.83
459 460 1.336440 CCATGCTCCACACGAAAACAA 59.664 47.619 0.00 0.00 0.00 2.83
460 461 0.950836 CCATGCTCCACACGAAAACA 59.049 50.000 0.00 0.00 0.00 2.83
461 462 0.951558 ACCATGCTCCACACGAAAAC 59.048 50.000 0.00 0.00 0.00 2.43
462 463 1.336440 CAACCATGCTCCACACGAAAA 59.664 47.619 0.00 0.00 0.00 2.29
463 464 0.950836 CAACCATGCTCCACACGAAA 59.049 50.000 0.00 0.00 0.00 3.46
464 465 0.179032 ACAACCATGCTCCACACGAA 60.179 50.000 0.00 0.00 0.00 3.85
465 466 0.884259 CACAACCATGCTCCACACGA 60.884 55.000 0.00 0.00 0.00 4.35
466 467 1.575922 CACAACCATGCTCCACACG 59.424 57.895 0.00 0.00 0.00 4.49
467 468 1.286880 GCACAACCATGCTCCACAC 59.713 57.895 0.00 0.00 42.62 3.82
468 469 3.762293 GCACAACCATGCTCCACA 58.238 55.556 0.00 0.00 42.62 4.17
474 475 1.805428 AACCGGAAGCACAACCATGC 61.805 55.000 9.46 0.00 46.50 4.06
475 476 0.673437 AAACCGGAAGCACAACCATG 59.327 50.000 9.46 0.00 0.00 3.66
476 477 0.958822 GAAACCGGAAGCACAACCAT 59.041 50.000 9.46 0.00 0.00 3.55
477 478 0.106918 AGAAACCGGAAGCACAACCA 60.107 50.000 9.46 0.00 0.00 3.67
478 479 1.029681 AAGAAACCGGAAGCACAACC 58.970 50.000 9.46 0.00 0.00 3.77
479 480 1.404035 ACAAGAAACCGGAAGCACAAC 59.596 47.619 9.46 0.00 0.00 3.32
480 481 1.757682 ACAAGAAACCGGAAGCACAA 58.242 45.000 9.46 0.00 0.00 3.33
481 482 1.757682 AACAAGAAACCGGAAGCACA 58.242 45.000 9.46 0.00 0.00 4.57
482 483 2.863401 AAACAAGAAACCGGAAGCAC 57.137 45.000 9.46 0.00 0.00 4.40
483 484 3.949113 ACTAAAACAAGAAACCGGAAGCA 59.051 39.130 9.46 0.00 0.00 3.91
484 485 4.563337 ACTAAAACAAGAAACCGGAAGC 57.437 40.909 9.46 0.00 0.00 3.86
485 486 6.792326 AGAAACTAAAACAAGAAACCGGAAG 58.208 36.000 9.46 0.00 0.00 3.46
486 487 6.762702 AGAAACTAAAACAAGAAACCGGAA 57.237 33.333 9.46 0.00 0.00 4.30
487 488 8.454570 AATAGAAACTAAAACAAGAAACCGGA 57.545 30.769 9.46 0.00 0.00 5.14
488 489 8.347035 TGAATAGAAACTAAAACAAGAAACCGG 58.653 33.333 0.00 0.00 0.00 5.28
489 490 9.724839 TTGAATAGAAACTAAAACAAGAAACCG 57.275 29.630 0.00 0.00 0.00 4.44
513 514 4.549871 CGAAAACAGGGCGAAACAAAATTG 60.550 41.667 0.00 0.00 0.00 2.32
520 521 0.933047 GCACGAAAACAGGGCGAAAC 60.933 55.000 0.00 0.00 0.00 2.78
525 526 1.067060 AGAAAAGCACGAAAACAGGGC 59.933 47.619 0.00 0.00 38.53 5.19
530 531 2.863401 ACCCAGAAAAGCACGAAAAC 57.137 45.000 0.00 0.00 0.00 2.43
535 536 1.247567 ATGGAACCCAGAAAAGCACG 58.752 50.000 0.00 0.00 36.75 5.34
601 607 7.696872 GGCGTTTAGATCTTTGAAACTAAATCC 59.303 37.037 14.60 0.00 37.24 3.01
608 614 6.474102 TGTTTTGGCGTTTAGATCTTTGAAAC 59.526 34.615 0.00 5.01 0.00 2.78
621 627 3.801594 GTCATCATTGTGTTTTGGCGTTT 59.198 39.130 0.00 0.00 0.00 3.60
624 630 3.010624 TGTCATCATTGTGTTTTGGCG 57.989 42.857 0.00 0.00 0.00 5.69
627 633 8.176365 ACAATTTGTTGTCATCATTGTGTTTTG 58.824 29.630 0.00 0.00 36.91 2.44
629 635 7.548427 TCACAATTTGTTGTCATCATTGTGTTT 59.452 29.630 19.96 0.00 44.79 2.83
639 645 4.808558 CCCGAATCACAATTTGTTGTCAT 58.191 39.130 0.00 0.00 31.86 3.06
641 647 2.986479 GCCCGAATCACAATTTGTTGTC 59.014 45.455 0.00 0.00 31.86 3.18
645 651 2.674747 GCATGCCCGAATCACAATTTGT 60.675 45.455 6.36 0.00 0.00 2.83
646 652 1.928503 GCATGCCCGAATCACAATTTG 59.071 47.619 6.36 0.00 0.00 2.32
649 655 2.118132 GGCATGCCCGAATCACAAT 58.882 52.632 27.24 0.00 0.00 2.71
659 665 1.401905 CTTCTCTTAAACGGCATGCCC 59.598 52.381 30.79 13.37 0.00 5.36
660 666 1.401905 CCTTCTCTTAAACGGCATGCC 59.598 52.381 27.67 27.67 0.00 4.40
661 667 1.202188 GCCTTCTCTTAAACGGCATGC 60.202 52.381 9.90 9.90 40.41 4.06
667 673 6.369065 AGACACTTATTGCCTTCTCTTAAACG 59.631 38.462 0.00 0.00 0.00 3.60
681 687 6.018425 GCACATCATAGGTGAGACACTTATTG 60.018 42.308 4.27 4.71 35.06 1.90
717 723 1.063806 GCACACACACTTCTCTAGCG 58.936 55.000 0.00 0.00 0.00 4.26
720 726 1.270305 GCCTGCACACACACTTCTCTA 60.270 52.381 0.00 0.00 0.00 2.43
726 732 2.124736 AACGCCTGCACACACACT 60.125 55.556 0.00 0.00 0.00 3.55
728 734 2.630592 TACGAACGCCTGCACACACA 62.631 55.000 0.00 0.00 0.00 3.72
730 736 1.663388 CTACGAACGCCTGCACACA 60.663 57.895 0.00 0.00 0.00 3.72
731 737 2.380410 CCTACGAACGCCTGCACAC 61.380 63.158 0.00 0.00 0.00 3.82
732 738 2.048597 CCTACGAACGCCTGCACA 60.049 61.111 0.00 0.00 0.00 4.57
733 739 2.813908 CCCTACGAACGCCTGCAC 60.814 66.667 0.00 0.00 0.00 4.57
734 740 4.077184 CCCCTACGAACGCCTGCA 62.077 66.667 0.00 0.00 0.00 4.41
735 741 4.078516 ACCCCTACGAACGCCTGC 62.079 66.667 0.00 0.00 0.00 4.85
736 742 2.125673 CACCCCTACGAACGCCTG 60.126 66.667 0.00 0.00 0.00 4.85
737 743 2.283388 TCACCCCTACGAACGCCT 60.283 61.111 0.00 0.00 0.00 5.52
739 745 1.445582 CACTCACCCCTACGAACGC 60.446 63.158 0.00 0.00 0.00 4.84
740 746 1.167851 TACACTCACCCCTACGAACG 58.832 55.000 0.00 0.00 0.00 3.95
741 747 2.737679 GCATACACTCACCCCTACGAAC 60.738 54.545 0.00 0.00 0.00 3.95
742 748 1.479323 GCATACACTCACCCCTACGAA 59.521 52.381 0.00 0.00 0.00 3.85
743 749 1.108776 GCATACACTCACCCCTACGA 58.891 55.000 0.00 0.00 0.00 3.43
744 750 1.067212 GAGCATACACTCACCCCTACG 59.933 57.143 0.00 0.00 36.65 3.51
745 751 2.108168 TGAGCATACACTCACCCCTAC 58.892 52.381 0.00 0.00 41.72 3.18
765 771 9.692749 CGGTACAATTAAGTCACTCATATACAT 57.307 33.333 0.00 0.00 0.00 2.29
771 777 4.827692 TGCGGTACAATTAAGTCACTCAT 58.172 39.130 0.00 0.00 0.00 2.90
806 812 4.383118 GGTCACTCACACCTTGTATAGCAT 60.383 45.833 0.00 0.00 0.00 3.79
807 813 3.056107 GGTCACTCACACCTTGTATAGCA 60.056 47.826 0.00 0.00 0.00 3.49
808 814 3.195825 AGGTCACTCACACCTTGTATAGC 59.804 47.826 0.00 0.00 41.95 2.97
817 823 2.367567 TCTGGTAAAGGTCACTCACACC 59.632 50.000 0.00 0.00 0.00 4.16
893 899 4.010349 GGGATGGTTTCTTCGAAATCACT 58.990 43.478 4.58 0.00 0.00 3.41
894 900 3.128764 GGGGATGGTTTCTTCGAAATCAC 59.871 47.826 4.58 0.00 0.00 3.06
895 901 3.352648 GGGGATGGTTTCTTCGAAATCA 58.647 45.455 0.00 4.92 0.00 2.57
897 903 2.365582 CGGGGATGGTTTCTTCGAAAT 58.634 47.619 0.00 0.00 0.00 2.17
898 904 1.612199 CCGGGGATGGTTTCTTCGAAA 60.612 52.381 0.00 0.00 0.00 3.46
958 1073 3.189287 CAGCTCACGGCCCAAATAATATC 59.811 47.826 0.00 0.00 43.05 1.63
961 1076 1.064758 TCAGCTCACGGCCCAAATAAT 60.065 47.619 0.00 0.00 43.05 1.28
1002 1123 1.227205 CTCCAGGCTGAAGCTAGCG 60.227 63.158 17.94 0.00 44.60 4.26
1004 1125 4.852962 GCTCCAGGCTGAAGCTAG 57.147 61.111 19.33 7.35 41.70 3.42
1247 1399 3.347590 GCTAGGGGGCTGGGGTTT 61.348 66.667 0.00 0.00 0.00 3.27
1344 1497 3.329889 TCCCTCGCCCAGCAATGT 61.330 61.111 0.00 0.00 0.00 2.71
1346 1499 3.011517 ACTCCCTCGCCCAGCAAT 61.012 61.111 0.00 0.00 0.00 3.56
1365 1518 0.738389 ATTGCAACCTAAATCCGCCG 59.262 50.000 0.00 0.00 0.00 6.46
1368 1521 3.425404 CACGAATTGCAACCTAAATCCG 58.575 45.455 0.00 0.00 0.00 4.18
1389 1542 3.216944 CTGCACAACCCAGCAAGCC 62.217 63.158 0.00 0.00 40.73 4.35
1390 1543 1.172180 TACTGCACAACCCAGCAAGC 61.172 55.000 0.00 0.00 40.73 4.01
1400 1553 0.179020 AGTGGCAAGCTACTGCACAA 60.179 50.000 10.38 0.00 44.52 3.33
1443 1596 0.604243 ATTTAACCCACGAGCGCACA 60.604 50.000 11.47 0.00 0.00 4.57
1464 1617 3.464720 TCCCCTCCTATCTGCATCTAG 57.535 52.381 0.00 0.00 0.00 2.43
1486 1639 3.407424 GCTAGGCCATGACATACATCA 57.593 47.619 5.01 0.00 37.07 3.07
1525 1678 2.900273 GCCAGATCCGCTACACCA 59.100 61.111 0.00 0.00 0.00 4.17
1569 1722 4.537688 TCTGTCATCTTCCTCCCAAATCTT 59.462 41.667 0.00 0.00 0.00 2.40
1589 1742 4.277476 AGTTATCAGTGTCCTCCTCTCTG 58.723 47.826 0.00 0.00 0.00 3.35
1663 1852 3.296709 CTCCAGGGTTCCGGTGTCG 62.297 68.421 0.00 0.00 0.00 4.35
1678 1867 3.892588 CTGTAGATCCTAACCCTGACTCC 59.107 52.174 0.00 0.00 0.00 3.85
1702 1891 5.995282 CAGGAGGTTGTACACAAATGTCTTA 59.005 40.000 0.00 0.00 40.48 2.10
1731 1920 1.013596 CAGCGTGTCCAAACTGACAA 58.986 50.000 0.00 0.00 46.17 3.18
1740 1929 2.203139 CCACCAACAGCGTGTCCA 60.203 61.111 0.00 0.00 0.00 4.02
1741 1930 2.978010 CCCACCAACAGCGTGTCC 60.978 66.667 0.00 0.00 0.00 4.02
1779 1968 6.985653 TTTGGGAATCACCATTTTTGAGTA 57.014 33.333 0.00 0.00 40.91 2.59
1783 1972 7.118101 CACACTATTTGGGAATCACCATTTTTG 59.882 37.037 0.00 0.00 40.91 2.44
1816 2006 1.140852 TGTGAGCAGATAATTCCCCGG 59.859 52.381 0.00 0.00 0.00 5.73
1873 2064 4.487714 CAGATTTCTGTAGGCAGGGTTA 57.512 45.455 0.00 0.00 42.78 2.85
2283 2497 0.391597 GCCACCGCCTAGTGCTTATA 59.608 55.000 2.39 0.00 38.05 0.98
2472 2688 4.823442 CAGATAACATGCCTGCTCCATTAA 59.177 41.667 0.00 0.00 0.00 1.40
2502 2719 1.678970 GCTGCCAACTGTAAGGGGG 60.679 63.158 0.00 0.00 39.30 5.40
2972 3195 1.974236 CCAACAAAGGCCCCATTAACA 59.026 47.619 0.00 0.00 0.00 2.41
2973 3196 2.760634 CCAACAAAGGCCCCATTAAC 57.239 50.000 0.00 0.00 0.00 2.01
3126 3349 5.308497 TGAACAGGTGGTATCCTTCAAAGTA 59.692 40.000 0.00 0.00 35.37 2.24
3162 3385 7.625498 TTTCTTTTTCATGTATTTCCCCCTT 57.375 32.000 0.00 0.00 0.00 3.95
3196 3419 5.105228 CCCAGACACATAAAATTGCAAGGAT 60.105 40.000 4.94 0.00 0.00 3.24
3220 3443 2.813754 TCTTGCTTCAGTGCCACATTAC 59.186 45.455 0.00 0.00 0.00 1.89
3247 3470 4.761227 TCAAACATAGCAACAAGATCAGCA 59.239 37.500 0.00 0.00 0.00 4.41
3389 3612 0.175531 GCTCTTCCTCAGGAGACAGC 59.824 60.000 0.00 0.00 31.21 4.40
3461 3686 7.557358 TGCATAAAGCTAATGATTGAGAGGAAA 59.443 33.333 12.05 0.00 45.94 3.13
3598 3823 7.102346 AGGAAACATGTCTGTCATAGAAGAAG 58.898 38.462 0.00 0.00 37.12 2.85
3648 3874 4.275936 TCTTTGGTTCTGCTAAAAGACTGC 59.724 41.667 0.00 0.00 34.56 4.40
3796 4022 4.095036 GGTAAATTCAGGCTGTCTACTTGC 59.905 45.833 15.27 5.89 0.00 4.01
3975 4201 8.600449 AGTATGCTAAATATGCTCAAGACTTC 57.400 34.615 0.00 0.00 0.00 3.01
4123 4615 7.568349 TCCTCTGAAAGCAACTCAACATATAT 58.432 34.615 0.00 0.00 0.00 0.86
4163 4655 1.597854 CTGCTGAAGGGACAACGCA 60.598 57.895 0.00 0.00 0.00 5.24
4451 4947 4.518590 CACACCAATACAAGTGATGTCCAA 59.481 41.667 0.00 0.00 42.70 3.53
4461 5591 3.896648 AAAGACGCACACCAATACAAG 57.103 42.857 0.00 0.00 0.00 3.16
4480 5610 7.707624 TCTATGTTAAGTCTCCCTCGTTAAA 57.292 36.000 0.00 0.00 0.00 1.52
4544 5706 6.517605 TCTTTTGCACCCAAGGTAAAAATAC 58.482 36.000 0.00 0.00 33.23 1.89
4567 5729 4.082571 GGTATAGGCATGCATTCAACCATC 60.083 45.833 21.36 0.00 0.00 3.51
4714 5877 0.753479 TCCGCTGTGCCCTTCAAAAA 60.753 50.000 0.00 0.00 0.00 1.94
4715 5878 1.152860 TCCGCTGTGCCCTTCAAAA 60.153 52.632 0.00 0.00 0.00 2.44
4716 5879 1.600636 CTCCGCTGTGCCCTTCAAA 60.601 57.895 0.00 0.00 0.00 2.69
4717 5880 2.032528 CTCCGCTGTGCCCTTCAA 59.967 61.111 0.00 0.00 0.00 2.69
4740 5903 4.574674 TGCATCACTCCTCCTTGTAAAT 57.425 40.909 0.00 0.00 0.00 1.40
4824 5987 2.292828 AACCCAGGTCACTTCCAATG 57.707 50.000 0.00 0.00 0.00 2.82
4973 6139 2.768253 CACTTCTGGTGGCAGATGTA 57.232 50.000 0.00 0.00 41.90 2.29
4974 6140 3.639099 CACTTCTGGTGGCAGATGT 57.361 52.632 0.00 0.00 41.90 3.06
5003 6169 4.089923 GTCAAAGCAAAATATCCAACACGC 59.910 41.667 0.00 0.00 0.00 5.34
5118 6284 1.273986 TTGGCATAGGCTGAGGCTGA 61.274 55.000 19.68 3.26 39.30 4.26
5119 6285 0.178998 ATTGGCATAGGCTGAGGCTG 60.179 55.000 19.68 4.73 39.30 4.85
5120 6286 0.178998 CATTGGCATAGGCTGAGGCT 60.179 55.000 14.55 14.55 42.39 4.58
5121 6287 1.803366 GCATTGGCATAGGCTGAGGC 61.803 60.000 0.00 0.00 40.87 4.70
5122 6288 2.338381 GCATTGGCATAGGCTGAGG 58.662 57.895 0.00 0.00 40.87 3.86
5322 6490 6.039717 GGATCTGCTTACTGGCAAATGATTTA 59.960 38.462 0.00 0.00 41.94 1.40
5394 6562 3.181454 ACAGGAAACAGTTCAAGTCCGAT 60.181 43.478 0.00 0.00 35.25 4.18
5528 6697 5.634859 CAGGCCTGAAATGTAACATTTGTTC 59.365 40.000 29.88 0.00 39.31 3.18
5615 6784 6.990798 TGAATTGCCACATTAAAAGTCATCA 58.009 32.000 0.00 0.00 0.00 3.07
5616 6785 7.092716 ACTGAATTGCCACATTAAAAGTCATC 58.907 34.615 0.00 0.00 0.00 2.92
5617 6786 6.996509 ACTGAATTGCCACATTAAAAGTCAT 58.003 32.000 0.00 0.00 0.00 3.06
5706 6875 7.685849 AGGTCCTAGTATTGCTGGTAATAAA 57.314 36.000 0.00 0.00 0.00 1.40
5848 7039 7.201732 GGCTGCTTCATGCTAGAAATTTAGTAA 60.202 37.037 0.00 0.00 43.37 2.24
5891 7082 6.839124 ACATCTGAAATAGCAATTTGTCCA 57.161 33.333 0.00 0.00 35.41 4.02
6001 7192 3.937706 CGGCAGATTGAGAGTGAGAAAAT 59.062 43.478 0.00 0.00 0.00 1.82
6129 7320 3.003173 CCTCGGCCCTGGAACTGA 61.003 66.667 0.00 0.00 0.00 3.41
6355 7558 3.118482 CCAGAGCAGACAGATACATGGTT 60.118 47.826 0.00 0.00 0.00 3.67
6432 7638 7.450124 TCTTCTACTTTACACGACAATCTCT 57.550 36.000 0.00 0.00 0.00 3.10
6544 7750 1.305201 GCAAAGGGACGTCAAAGACA 58.695 50.000 18.91 0.00 32.09 3.41
6556 7762 4.705519 CAACTGCGCCGCAAAGGG 62.706 66.667 14.77 3.47 38.41 3.95
6608 7814 1.805120 CGGAATAAGAACCGGCGTCAT 60.805 52.381 6.01 0.00 44.59 3.06
6632 7838 2.928801 TGGCAGAACAGCTAAAGACA 57.071 45.000 0.00 0.00 34.17 3.41
6638 7844 0.108186 CCGACATGGCAGAACAGCTA 60.108 55.000 0.00 0.00 34.17 3.32
6667 7873 4.972751 AAACCCTTGCATTTTGGTACAT 57.027 36.364 0.00 0.00 39.30 2.29
6718 7928 7.383156 TCCCCTCGATAATAAAATGTAAGGT 57.617 36.000 0.00 0.00 0.00 3.50
6735 7945 3.611766 ACTCATTTGTAGTTCCCCTCG 57.388 47.619 0.00 0.00 0.00 4.63
6741 7951 8.784043 ACCACAATCTTTACTCATTTGTAGTTC 58.216 33.333 0.00 0.00 0.00 3.01
6744 7954 9.965824 AAAACCACAATCTTTACTCATTTGTAG 57.034 29.630 0.00 0.00 0.00 2.74
6835 8046 2.028748 GCTGAACCTCGTAACTTACCCA 60.029 50.000 0.00 0.00 0.00 4.51
6841 8052 0.969894 AGCAGCTGAACCTCGTAACT 59.030 50.000 20.43 0.00 0.00 2.24
6847 8058 3.045601 TCACTTTAGCAGCTGAACCTC 57.954 47.619 20.43 0.00 0.00 3.85
6859 8070 7.542130 GGTGCCTGATGTTTTATTTCACTTTAG 59.458 37.037 0.00 0.00 0.00 1.85
6916 8128 5.348997 GGAAAAGTCTATGTTTCACTCCTCG 59.651 44.000 0.00 0.00 35.80 4.63
6934 8146 6.998802 TCTCCTCTTCTTCAGTAAGGAAAAG 58.001 40.000 0.00 0.00 35.77 2.27
6937 8149 5.105146 GCATCTCCTCTTCTTCAGTAAGGAA 60.105 44.000 0.00 0.00 35.77 3.36
6943 8155 2.544721 TGGCATCTCCTCTTCTTCAGT 58.455 47.619 0.00 0.00 35.26 3.41
6947 8159 5.819991 TGTTTATTGGCATCTCCTCTTCTT 58.180 37.500 0.00 0.00 35.26 2.52
6952 8164 9.822185 AAAATAAATGTTTATTGGCATCTCCTC 57.178 29.630 10.54 0.00 41.20 3.71
7029 8268 0.599991 TGGCTCACTGCGTGTTACTG 60.600 55.000 8.22 0.00 44.05 2.74
7031 8270 0.319555 TCTGGCTCACTGCGTGTTAC 60.320 55.000 8.22 2.15 44.05 2.50
7032 8271 0.038251 CTCTGGCTCACTGCGTGTTA 60.038 55.000 8.22 0.00 44.05 2.41
7034 8273 2.341543 CTCTGGCTCACTGCGTGT 59.658 61.111 8.22 0.00 44.05 4.49
7035 8274 3.117171 GCTCTGGCTCACTGCGTG 61.117 66.667 2.79 2.79 44.05 5.34
7036 8275 4.731612 CGCTCTGGCTCACTGCGT 62.732 66.667 0.00 0.00 44.05 5.24
7037 8276 3.921767 TTCGCTCTGGCTCACTGCG 62.922 63.158 0.00 0.00 46.71 5.18
7160 8402 0.247460 CAGGCCACGTTCTCTCATCA 59.753 55.000 5.01 0.00 0.00 3.07
7161 8403 0.247736 ACAGGCCACGTTCTCTCATC 59.752 55.000 5.01 0.00 0.00 2.92
7162 8404 0.687354 AACAGGCCACGTTCTCTCAT 59.313 50.000 5.01 0.00 0.00 2.90
7226 8483 3.572255 AGAAGCAGATCGATCTAGGGTTC 59.428 47.826 30.97 30.97 37.48 3.62
7253 8510 0.107945 GGGAGATGAGAAGCGCACTT 60.108 55.000 11.47 0.00 39.43 3.16
7254 8511 1.519719 GGGAGATGAGAAGCGCACT 59.480 57.895 11.47 8.76 0.00 4.40
7255 8512 1.880340 CGGGAGATGAGAAGCGCAC 60.880 63.158 11.47 2.78 0.00 5.34
7256 8513 2.496341 CGGGAGATGAGAAGCGCA 59.504 61.111 11.47 0.00 0.00 6.09
7257 8514 2.964389 GCGGGAGATGAGAAGCGC 60.964 66.667 0.00 0.00 0.00 5.92
7259 8516 1.601430 GATTTGCGGGAGATGAGAAGC 59.399 52.381 0.00 0.00 0.00 3.86
7291 8599 6.391537 AGTGAAGAGAAGAACTTTATCGGTC 58.608 40.000 0.00 0.00 0.00 4.79
7292 8600 6.347859 AGTGAAGAGAAGAACTTTATCGGT 57.652 37.500 0.00 0.00 0.00 4.69
7293 8601 6.034044 CGAAGTGAAGAGAAGAACTTTATCGG 59.966 42.308 0.00 0.00 33.14 4.18
7294 8602 6.802348 TCGAAGTGAAGAGAAGAACTTTATCG 59.198 38.462 0.00 0.00 33.14 2.92
7329 8641 6.167685 AGCGAGGTACATATTTTTGTGTGTA 58.832 36.000 0.00 0.00 0.00 2.90
7330 8642 5.001232 AGCGAGGTACATATTTTTGTGTGT 58.999 37.500 0.00 0.00 0.00 3.72
7331 8643 5.545658 AGCGAGGTACATATTTTTGTGTG 57.454 39.130 0.00 0.00 0.00 3.82
7332 8644 7.551262 TGATTAGCGAGGTACATATTTTTGTGT 59.449 33.333 0.00 0.00 0.00 3.72
7333 8645 7.850982 GTGATTAGCGAGGTACATATTTTTGTG 59.149 37.037 0.00 0.00 0.00 3.33
7334 8646 7.254319 CGTGATTAGCGAGGTACATATTTTTGT 60.254 37.037 0.00 0.00 0.00 2.83
7335 8647 7.063456 CGTGATTAGCGAGGTACATATTTTTG 58.937 38.462 0.00 0.00 0.00 2.44
7336 8648 6.759827 ACGTGATTAGCGAGGTACATATTTTT 59.240 34.615 0.00 0.00 0.00 1.94
7338 8650 5.839621 ACGTGATTAGCGAGGTACATATTT 58.160 37.500 0.00 0.00 0.00 1.40
7341 8872 6.375945 TTTACGTGATTAGCGAGGTACATA 57.624 37.500 0.00 0.00 0.00 2.29
7367 8898 7.175104 TCCAAGAAACTAATTAATGGAGTGCT 58.825 34.615 4.47 3.52 33.28 4.40
7368 8899 7.391148 TCCAAGAAACTAATTAATGGAGTGC 57.609 36.000 4.47 1.73 33.28 4.40
7389 8925 7.013846 CACAAAAAGAACAAGTAGGGTTATCCA 59.986 37.037 0.00 0.00 38.24 3.41
7390 8926 7.229907 TCACAAAAAGAACAAGTAGGGTTATCC 59.770 37.037 0.00 0.00 0.00 2.59
7391 8927 8.074370 GTCACAAAAAGAACAAGTAGGGTTATC 58.926 37.037 0.00 0.00 0.00 1.75
7393 8929 6.885376 TGTCACAAAAAGAACAAGTAGGGTTA 59.115 34.615 0.00 0.00 0.00 2.85
7394 8930 5.712917 TGTCACAAAAAGAACAAGTAGGGTT 59.287 36.000 0.00 0.00 0.00 4.11
7395 8931 5.258051 TGTCACAAAAAGAACAAGTAGGGT 58.742 37.500 0.00 0.00 0.00 4.34
7396 8932 5.828299 TGTCACAAAAAGAACAAGTAGGG 57.172 39.130 0.00 0.00 0.00 3.53
7397 8933 7.257722 ACATTGTCACAAAAAGAACAAGTAGG 58.742 34.615 0.00 0.00 0.00 3.18
7398 8934 8.586273 CAACATTGTCACAAAAAGAACAAGTAG 58.414 33.333 0.00 0.00 0.00 2.57
7399 8935 8.300286 TCAACATTGTCACAAAAAGAACAAGTA 58.700 29.630 0.00 0.00 0.00 2.24
7400 8936 7.116233 GTCAACATTGTCACAAAAAGAACAAGT 59.884 33.333 0.00 0.00 0.00 3.16
7401 8937 7.116090 TGTCAACATTGTCACAAAAAGAACAAG 59.884 33.333 0.00 0.00 0.00 3.16
7402 8938 6.925718 TGTCAACATTGTCACAAAAAGAACAA 59.074 30.769 0.00 0.00 0.00 2.83
7403 8939 6.450545 TGTCAACATTGTCACAAAAAGAACA 58.549 32.000 0.00 0.00 0.00 3.18
7404 8940 6.942886 TGTCAACATTGTCACAAAAAGAAC 57.057 33.333 0.00 0.00 0.00 3.01
7447 9775 1.671166 GGAAAACATGTGTGGCCCC 59.329 57.895 0.00 0.00 0.00 5.80
7448 9776 1.671166 GGGAAAACATGTGTGGCCC 59.329 57.895 10.60 10.60 0.00 5.80
7449 9777 0.831711 AGGGGAAAACATGTGTGGCC 60.832 55.000 0.00 0.00 0.00 5.36
7450 9778 1.000843 GAAGGGGAAAACATGTGTGGC 59.999 52.381 0.00 0.00 0.00 5.01
7451 9779 2.558359 GAGAAGGGGAAAACATGTGTGG 59.442 50.000 0.00 0.00 0.00 4.17
7452 9780 3.490348 AGAGAAGGGGAAAACATGTGTG 58.510 45.455 0.00 0.00 0.00 3.82
7453 9781 3.395941 AGAGAGAAGGGGAAAACATGTGT 59.604 43.478 0.00 0.00 0.00 3.72
7454 9782 4.006319 GAGAGAGAAGGGGAAAACATGTG 58.994 47.826 0.00 0.00 0.00 3.21
7455 9783 3.652869 TGAGAGAGAAGGGGAAAACATGT 59.347 43.478 0.00 0.00 0.00 3.21
7456 9784 4.292186 TGAGAGAGAAGGGGAAAACATG 57.708 45.455 0.00 0.00 0.00 3.21
7457 9785 4.787534 AGATGAGAGAGAAGGGGAAAACAT 59.212 41.667 0.00 0.00 0.00 2.71
7458 9786 4.171234 AGATGAGAGAGAAGGGGAAAACA 58.829 43.478 0.00 0.00 0.00 2.83
7459 9787 4.469586 AGAGATGAGAGAGAAGGGGAAAAC 59.530 45.833 0.00 0.00 0.00 2.43
7460 9788 4.693420 AGAGATGAGAGAGAAGGGGAAAA 58.307 43.478 0.00 0.00 0.00 2.29
7461 9789 4.285863 GAGAGATGAGAGAGAAGGGGAAA 58.714 47.826 0.00 0.00 0.00 3.13
7462 9790 3.373658 GGAGAGATGAGAGAGAAGGGGAA 60.374 52.174 0.00 0.00 0.00 3.97
7463 9791 2.176798 GGAGAGATGAGAGAGAAGGGGA 59.823 54.545 0.00 0.00 0.00 4.81
7464 9792 2.177669 AGGAGAGATGAGAGAGAAGGGG 59.822 54.545 0.00 0.00 0.00 4.79
7465 9793 3.139025 AGAGGAGAGATGAGAGAGAAGGG 59.861 52.174 0.00 0.00 0.00 3.95
7466 9794 4.443978 AGAGGAGAGATGAGAGAGAAGG 57.556 50.000 0.00 0.00 0.00 3.46
7467 9795 4.823989 GGAAGAGGAGAGATGAGAGAGAAG 59.176 50.000 0.00 0.00 0.00 2.85
7468 9796 4.478317 AGGAAGAGGAGAGATGAGAGAGAA 59.522 45.833 0.00 0.00 0.00 2.87
7469 9797 4.047166 AGGAAGAGGAGAGATGAGAGAGA 58.953 47.826 0.00 0.00 0.00 3.10
7470 9798 4.392940 GAGGAAGAGGAGAGATGAGAGAG 58.607 52.174 0.00 0.00 0.00 3.20
7471 9799 3.138283 GGAGGAAGAGGAGAGATGAGAGA 59.862 52.174 0.00 0.00 0.00 3.10
7472 9800 3.139025 AGGAGGAAGAGGAGAGATGAGAG 59.861 52.174 0.00 0.00 0.00 3.20
7473 9801 3.117550 CAGGAGGAAGAGGAGAGATGAGA 60.118 52.174 0.00 0.00 0.00 3.27
7474 9802 3.225104 CAGGAGGAAGAGGAGAGATGAG 58.775 54.545 0.00 0.00 0.00 2.90
7475 9803 2.091389 CCAGGAGGAAGAGGAGAGATGA 60.091 54.545 0.00 0.00 36.89 2.92
7476 9804 2.318908 CCAGGAGGAAGAGGAGAGATG 58.681 57.143 0.00 0.00 36.89 2.90
7477 9805 1.936631 ACCAGGAGGAAGAGGAGAGAT 59.063 52.381 0.00 0.00 38.69 2.75
7478 9806 1.006519 CACCAGGAGGAAGAGGAGAGA 59.993 57.143 0.00 0.00 38.69 3.10
7479 9807 1.484038 CACCAGGAGGAAGAGGAGAG 58.516 60.000 0.00 0.00 38.69 3.20
7480 9808 0.041833 CCACCAGGAGGAAGAGGAGA 59.958 60.000 0.00 0.00 38.69 3.71
7481 9809 0.980231 CCCACCAGGAGGAAGAGGAG 60.980 65.000 4.06 0.00 38.24 3.69
7482 9810 1.081092 CCCACCAGGAGGAAGAGGA 59.919 63.158 4.06 0.00 38.24 3.71
7483 9811 1.997874 CCCCACCAGGAGGAAGAGG 60.998 68.421 4.06 0.00 38.24 3.69
7484 9812 2.674220 GCCCCACCAGGAGGAAGAG 61.674 68.421 4.06 0.00 38.24 2.85
7485 9813 2.610859 GCCCCACCAGGAGGAAGA 60.611 66.667 4.06 0.00 38.24 2.87
7486 9814 2.612115 AGCCCCACCAGGAGGAAG 60.612 66.667 4.06 0.00 38.24 3.46
7487 9815 2.610859 GAGCCCCACCAGGAGGAA 60.611 66.667 4.06 0.00 38.24 3.36
7488 9816 3.273071 ATGAGCCCCACCAGGAGGA 62.273 63.158 4.06 0.00 38.24 3.71
7489 9817 2.693864 ATGAGCCCCACCAGGAGG 60.694 66.667 0.00 0.00 38.24 4.30
7490 9818 2.593978 CATGAGCCCCACCAGGAG 59.406 66.667 0.00 0.00 38.24 3.69
7491 9819 3.731728 GCATGAGCCCCACCAGGA 61.732 66.667 0.00 0.00 38.24 3.86
7492 9820 4.051167 TGCATGAGCCCCACCAGG 62.051 66.667 0.00 0.00 41.13 4.45
7493 9821 2.753043 GTGCATGAGCCCCACCAG 60.753 66.667 0.00 0.00 41.13 4.00
7494 9822 3.578286 TGTGCATGAGCCCCACCA 61.578 61.111 0.00 0.00 41.13 4.17
7495 9823 3.064324 GTGTGCATGAGCCCCACC 61.064 66.667 0.00 0.00 41.13 4.61
7496 9824 3.434319 CGTGTGCATGAGCCCCAC 61.434 66.667 0.00 0.00 41.13 4.61
7497 9825 3.952508 ACGTGTGCATGAGCCCCA 61.953 61.111 0.00 0.00 41.13 4.96
7498 9826 3.434319 CACGTGTGCATGAGCCCC 61.434 66.667 7.58 0.00 41.13 5.80
7499 9827 3.434319 CCACGTGTGCATGAGCCC 61.434 66.667 15.65 0.00 41.13 5.19
7500 9828 4.107051 GCCACGTGTGCATGAGCC 62.107 66.667 19.85 0.00 41.13 4.70
7501 9829 4.107051 GGCCACGTGTGCATGAGC 62.107 66.667 24.07 14.67 42.57 4.26
7502 9830 3.792047 CGGCCACGTGTGCATGAG 61.792 66.667 24.07 12.29 34.81 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.