Multiple sequence alignment - TraesCS2A01G059700

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G059700 chr2A 100.000 6871 0 0 1 6871 25476253 25469383 0.000000e+00 12689.0
1 TraesCS2A01G059700 chr2A 97.898 2664 45 10 2358 5018 25462252 25459597 0.000000e+00 4599.0
2 TraesCS2A01G059700 chr2A 97.236 1592 20 3 5300 6871 25457949 25456362 0.000000e+00 2675.0
3 TraesCS2A01G059700 chr2A 93.594 1483 61 13 2358 3835 136636256 136637709 0.000000e+00 2182.0
4 TraesCS2A01G059700 chr2A 90.769 975 64 14 3975 4946 136637826 136638777 0.000000e+00 1279.0
5 TraesCS2A01G059700 chr2A 86.584 969 69 21 3769 4727 711852311 711853228 0.000000e+00 1013.0
6 TraesCS2A01G059700 chr2A 82.250 1031 158 16 1049 2065 760118870 760119889 0.000000e+00 867.0
7 TraesCS2A01G059700 chr2A 97.976 247 5 0 5062 5308 25459340 25459094 4.920000e-116 429.0
8 TraesCS2A01G059700 chr2A 83.696 460 56 9 1376 1817 25546475 25546933 3.830000e-112 416.0
9 TraesCS2A01G059700 chr2A 86.813 273 24 6 1810 2073 25586802 25586533 1.870000e-75 294.0
10 TraesCS2A01G059700 chr2A 85.845 219 29 2 1171 1389 25542989 25543205 1.490000e-56 231.0
11 TraesCS2A01G059700 chr2A 82.239 259 27 9 411 650 612752937 612752679 9.030000e-49 206.0
12 TraesCS2A01G059700 chr2A 79.699 266 28 12 6529 6773 25451333 25451073 1.190000e-37 169.0
13 TraesCS2A01G059700 chr5A 92.353 2890 139 38 2132 4986 692380334 692383176 0.000000e+00 4037.0
14 TraesCS2A01G059700 chr5A 91.687 2923 153 43 2176 5051 608273398 608276277 0.000000e+00 3969.0
15 TraesCS2A01G059700 chr5A 92.985 2523 106 29 2402 4915 79276924 79274464 0.000000e+00 3613.0
16 TraesCS2A01G059700 chr5A 96.234 239 9 0 645 883 87418949 87418711 6.460000e-105 392.0
17 TraesCS2A01G059700 chr5A 94.800 250 9 4 643 891 36172611 36172857 3.010000e-103 387.0
18 TraesCS2A01G059700 chr5A 94.400 250 10 4 643 891 36110174 36110420 1.400000e-101 381.0
19 TraesCS2A01G059700 chr5A 94.068 118 7 0 4910 5027 79269319 79269202 5.480000e-41 180.0
20 TraesCS2A01G059700 chr5A 81.720 93 15 2 884 975 4614349 4614440 7.390000e-10 76.8
21 TraesCS2A01G059700 chr2D 90.533 1426 110 20 2358 3771 68696274 68694862 0.000000e+00 1862.0
22 TraesCS2A01G059700 chr2D 88.626 1565 124 28 2243 3771 68571123 68569577 0.000000e+00 1855.0
23 TraesCS2A01G059700 chr2D 87.908 1563 123 28 2240 3771 68594725 68593198 0.000000e+00 1779.0
24 TraesCS2A01G059700 chr2D 86.228 835 81 23 4087 4915 68568764 68567958 0.000000e+00 874.0
25 TraesCS2A01G059700 chr2D 85.783 837 82 25 4087 4915 68592386 68591579 0.000000e+00 852.0
26 TraesCS2A01G059700 chr2D 88.598 649 48 14 1 645 649601156 649601782 0.000000e+00 765.0
27 TraesCS2A01G059700 chr2D 88.399 612 57 12 4087 4692 68660359 68659756 0.000000e+00 725.0
28 TraesCS2A01G059700 chr2D 86.071 481 34 14 4152 4629 649300558 649301008 2.880000e-133 486.0
29 TraesCS2A01G059700 chr2D 90.476 210 9 1 3941 4150 649300270 649300468 4.090000e-67 267.0
30 TraesCS2A01G059700 chr2D 90.123 81 7 1 5302 5381 300436387 300436307 3.390000e-18 104.0
31 TraesCS2A01G059700 chr2D 87.059 85 7 2 5301 5381 78563829 78563913 7.340000e-15 93.5
32 TraesCS2A01G059700 chr2D 81.633 98 16 1 884 981 178518720 178518625 5.710000e-11 80.5
33 TraesCS2A01G059700 chr2D 86.301 73 7 3 906 977 29144589 29144519 7.390000e-10 76.8
34 TraesCS2A01G059700 chr2D 85.333 75 8 3 906 979 597969641 597969569 2.660000e-09 75.0
35 TraesCS2A01G059700 chr2D 81.319 91 16 1 887 977 629483766 629483855 9.560000e-09 73.1
36 TraesCS2A01G059700 chr2D 88.333 60 6 1 2132 2191 323128194 323128136 3.440000e-08 71.3
37 TraesCS2A01G059700 chr3D 88.506 1566 128 28 2244 3771 510911613 510910062 0.000000e+00 1847.0
38 TraesCS2A01G059700 chr3D 86.747 83 8 2 5302 5381 157099442 157099360 9.490000e-14 89.8
39 TraesCS2A01G059700 chr3D 84.615 91 10 4 5295 5381 250923039 250923129 3.410000e-13 87.9
40 TraesCS2A01G059700 chr3D 81.522 92 13 4 887 977 5354155 5354067 9.560000e-09 73.1
41 TraesCS2A01G059700 chr3D 81.522 92 14 3 887 977 456531250 456531161 9.560000e-09 73.1
42 TraesCS2A01G059700 chr3D 88.333 60 6 1 2132 2191 547624787 547624729 3.440000e-08 71.3
43 TraesCS2A01G059700 chr3D 80.435 92 14 3 887 977 6331412 6331324 4.450000e-07 67.6
44 TraesCS2A01G059700 chr2B 90.430 1139 81 17 2640 3771 756300989 756299872 0.000000e+00 1474.0
45 TraesCS2A01G059700 chr2B 89.562 891 77 15 3769 4650 756299655 756298772 0.000000e+00 1116.0
46 TraesCS2A01G059700 chr2B 87.835 822 82 11 3769 4583 673715517 673714707 0.000000e+00 948.0
47 TraesCS2A01G059700 chr2B 83.385 650 96 11 1 643 705188647 705189291 5.930000e-165 592.0
48 TraesCS2A01G059700 chr2B 90.933 386 22 3 3769 4153 128383148 128382775 2.210000e-139 507.0
49 TraesCS2A01G059700 chr2B 97.071 239 7 0 646 884 25688330 25688568 2.980000e-108 403.0
50 TraesCS2A01G059700 chr2B 97.447 235 6 0 650 884 733460884 733460650 1.070000e-107 401.0
51 TraesCS2A01G059700 chr2B 92.248 258 18 2 4796 5051 128379639 128379382 1.410000e-96 364.0
52 TraesCS2A01G059700 chr2B 94.000 200 11 1 6496 6695 36977840 36977642 1.120000e-77 302.0
53 TraesCS2A01G059700 chr2B 84.247 146 16 3 6727 6865 36977641 36977496 1.200000e-27 135.0
54 TraesCS2A01G059700 chr2B 100.000 55 0 0 6393 6447 36992189 36992135 1.220000e-17 102.0
55 TraesCS2A01G059700 chr2B 97.917 48 1 0 6453 6500 36992098 36992051 4.420000e-12 84.2
56 TraesCS2A01G059700 chr7B 85.556 1170 109 25 3769 4932 733091003 733092118 0.000000e+00 1170.0
57 TraesCS2A01G059700 chr7B 86.030 995 97 25 4066 5051 726382085 726381124 0.000000e+00 1029.0
58 TraesCS2A01G059700 chr7B 85.657 997 98 27 4066 5051 726373380 726372418 0.000000e+00 1007.0
59 TraesCS2A01G059700 chr7B 86.175 217 28 2 3770 3985 715287541 715287756 4.140000e-57 233.0
60 TraesCS2A01G059700 chr7B 87.952 83 7 3 5302 5381 524994294 524994212 2.040000e-15 95.3
61 TraesCS2A01G059700 chr4A 86.400 1000 94 26 4065 5051 603723981 603723011 0.000000e+00 1055.0
62 TraesCS2A01G059700 chr4A 97.071 239 7 0 647 885 632653228 632653466 2.980000e-108 403.0
63 TraesCS2A01G059700 chr4D 86.058 997 79 34 4065 5051 120835629 120834683 0.000000e+00 1016.0
64 TraesCS2A01G059700 chr4D 86.420 81 10 1 5301 5381 322662590 322662511 3.410000e-13 87.9
65 TraesCS2A01G059700 chr4D 83.133 83 8 5 5302 5381 494787625 494787704 3.440000e-08 71.3
66 TraesCS2A01G059700 chr4D 93.478 46 3 0 5336 5381 17861260 17861305 1.240000e-07 69.4
67 TraesCS2A01G059700 chr4D 95.349 43 2 0 5339 5381 362116461 362116503 1.240000e-07 69.4
68 TraesCS2A01G059700 chr4D 82.927 82 7 4 5302 5381 320044179 320044255 4.450000e-07 67.6
69 TraesCS2A01G059700 chr4D 81.818 77 10 3 906 981 36583818 36583745 2.070000e-05 62.1
70 TraesCS2A01G059700 chr4D 87.500 56 4 3 5300 5352 238299885 238299940 2.070000e-05 62.1
71 TraesCS2A01G059700 chr5D 83.237 1038 147 17 1048 2065 518872779 518873809 0.000000e+00 928.0
72 TraesCS2A01G059700 chr5D 90.909 517 38 6 1 514 529800202 529800712 0.000000e+00 686.0
73 TraesCS2A01G059700 chr5D 86.848 479 40 12 4576 5052 536798528 536798071 1.320000e-141 514.0
74 TraesCS2A01G059700 chr5D 87.952 83 7 3 5302 5381 252217276 252217194 2.040000e-15 95.3
75 TraesCS2A01G059700 chr5D 87.952 83 7 3 5302 5381 420277140 420277222 2.040000e-15 95.3
76 TraesCS2A01G059700 chr5D 86.585 82 7 3 5304 5381 457676106 457676025 3.410000e-13 87.9
77 TraesCS2A01G059700 chr6B 85.792 922 76 22 4152 5050 171209461 171210350 0.000000e+00 926.0
78 TraesCS2A01G059700 chr6B 84.724 923 76 39 4152 5051 543841931 543842811 0.000000e+00 863.0
79 TraesCS2A01G059700 chr6B 91.906 383 18 3 3769 4150 543832774 543833144 2.200000e-144 523.0
80 TraesCS2A01G059700 chr6B 90.601 383 22 4 3769 4150 171208982 171209351 4.790000e-136 496.0
81 TraesCS2A01G059700 chr6B 86.697 218 28 1 3769 3985 123825265 123825482 2.480000e-59 241.0
82 TraesCS2A01G059700 chr6B 90.361 83 5 3 5302 5381 152083132 152083214 9.420000e-19 106.0
83 TraesCS2A01G059700 chr6B 90.123 81 7 1 5302 5381 630922360 630922440 3.390000e-18 104.0
84 TraesCS2A01G059700 chr6B 84.783 92 12 2 887 978 230766878 230766967 2.640000e-14 91.6
85 TraesCS2A01G059700 chr5B 82.659 1038 154 18 1048 2065 652520536 652521567 0.000000e+00 896.0
86 TraesCS2A01G059700 chr5B 91.228 57 2 2 5299 5352 697609502 697609446 2.660000e-09 75.0
87 TraesCS2A01G059700 chr5B 83.784 74 8 3 5301 5371 106954206 106954134 4.450000e-07 67.6
88 TraesCS2A01G059700 chr5B 82.143 84 10 4 893 975 699731718 699731639 4.450000e-07 67.6
89 TraesCS2A01G059700 chr5B 78.022 91 19 1 887 977 487495065 487495154 1.000000e-03 56.5
90 TraesCS2A01G059700 chr7D 87.057 819 64 23 4065 4877 635016540 635015758 0.000000e+00 887.0
91 TraesCS2A01G059700 chr7D 89.410 661 49 12 1 644 573372621 573371965 0.000000e+00 813.0
92 TraesCS2A01G059700 chr7D 85.845 219 29 2 3769 3985 503783767 503783549 1.490000e-56 231.0
93 TraesCS2A01G059700 chr7D 90.361 83 5 2 5302 5381 497023326 497023244 9.420000e-19 106.0
94 TraesCS2A01G059700 chr7D 90.000 60 6 0 2132 2191 633132614 633132673 2.050000e-10 78.7
95 TraesCS2A01G059700 chr7D 89.474 57 6 0 2132 2188 20349397 20349341 9.560000e-09 73.1
96 TraesCS2A01G059700 chr7D 78.947 95 15 4 885 978 292365653 292365563 7.440000e-05 60.2
97 TraesCS2A01G059700 chr3A 92.606 568 35 5 3905 4465 265170751 265171318 0.000000e+00 809.0
98 TraesCS2A01G059700 chr3A 89.612 645 52 3 1 645 57724190 57723561 0.000000e+00 806.0
99 TraesCS2A01G059700 chr3A 76.957 920 178 21 1171 2060 629056620 629057535 1.720000e-135 494.0
100 TraesCS2A01G059700 chr3A 81.818 473 46 20 2132 2573 265168926 265169389 1.820000e-95 361.0
101 TraesCS2A01G059700 chr3A 81.991 211 25 5 450 647 80492581 80492791 4.260000e-37 167.0
102 TraesCS2A01G059700 chr3A 85.714 91 9 4 5295 5381 333321383 333321293 7.340000e-15 93.5
103 TraesCS2A01G059700 chr3A 97.222 36 1 0 2153 2188 1586617 1586582 2.070000e-05 62.1
104 TraesCS2A01G059700 chr3A 97.222 36 1 0 2153 2188 1587146 1587111 2.070000e-05 62.1
105 TraesCS2A01G059700 chr6A 89.691 582 52 5 1 579 22027851 22027275 0.000000e+00 736.0
106 TraesCS2A01G059700 chr1B 87.211 649 72 6 1 645 231356387 231357028 0.000000e+00 728.0
107 TraesCS2A01G059700 chr1B 86.738 656 70 6 1 645 231359108 231359757 0.000000e+00 713.0
108 TraesCS2A01G059700 chr1B 87.654 81 7 3 5302 5379 331096894 331096974 2.640000e-14 91.6
109 TraesCS2A01G059700 chr1B 83.951 81 9 2 5301 5381 654631582 654631658 2.660000e-09 75.0
110 TraesCS2A01G059700 chr3B 85.780 654 70 11 4 644 779378984 779378341 0.000000e+00 671.0
111 TraesCS2A01G059700 chr3B 79.162 883 156 23 1171 2032 745540255 745541130 2.760000e-163 586.0
112 TraesCS2A01G059700 chr3B 77.586 928 158 34 1171 2060 744546587 744545672 3.670000e-142 516.0
113 TraesCS2A01G059700 chr3B 79.070 774 132 26 1181 1933 745474724 745473960 7.950000e-139 505.0
114 TraesCS2A01G059700 chr3B 78.089 785 148 15 1171 1933 744728705 744729487 6.240000e-130 475.0
115 TraesCS2A01G059700 chr3B 78.089 785 148 15 1171 1933 744847278 744848060 6.240000e-130 475.0
116 TraesCS2A01G059700 chr3B 85.714 91 9 4 5295 5381 312161290 312161380 7.340000e-15 93.5
117 TraesCS2A01G059700 chr3B 80.645 93 15 3 886 977 661207450 661207360 1.240000e-07 69.4
118 TraesCS2A01G059700 chr7A 97.890 237 5 0 647 883 88975698 88975462 1.780000e-110 411.0
119 TraesCS2A01G059700 chr7A 80.287 279 28 12 393 645 11819245 11818968 1.180000e-42 185.0
120 TraesCS2A01G059700 chr7A 80.287 279 28 11 393 645 95232476 95232199 1.180000e-42 185.0
121 TraesCS2A01G059700 chr7A 79.928 279 29 12 393 645 11785196 11784919 5.480000e-41 180.0
122 TraesCS2A01G059700 chr7A 79.004 281 30 12 393 645 31586145 31586424 1.530000e-36 165.0
123 TraesCS2A01G059700 chr7A 90.361 83 5 3 5302 5381 562275004 562274922 9.420000e-19 106.0
124 TraesCS2A01G059700 chrUn 97.479 238 5 1 647 883 11858731 11858494 8.300000e-109 405.0
125 TraesCS2A01G059700 chrUn 97.046 237 7 0 647 883 11822623 11822387 3.860000e-107 399.0
126 TraesCS2A01G059700 chrUn 91.667 48 3 1 5334 5381 65440907 65440861 1.600000e-06 65.8
127 TraesCS2A01G059700 chrUn 80.000 90 8 6 5301 5381 95593971 95593883 2.680000e-04 58.4
128 TraesCS2A01G059700 chrUn 85.455 55 5 3 5301 5352 267184121 267184067 3.000000e-03 54.7
129 TraesCS2A01G059700 chrUn 96.875 32 1 0 5297 5328 314725657 314725626 3.000000e-03 54.7
130 TraesCS2A01G059700 chrUn 96.875 32 1 0 5297 5328 335661777 335661808 3.000000e-03 54.7
131 TraesCS2A01G059700 chrUn 92.308 39 2 1 5301 5338 347977092 347977130 3.000000e-03 54.7
132 TraesCS2A01G059700 chrUn 92.308 39 2 1 5301 5338 378080292 378080330 3.000000e-03 54.7
133 TraesCS2A01G059700 chrUn 96.875 32 1 0 5297 5328 425115483 425115514 3.000000e-03 54.7
134 TraesCS2A01G059700 chrUn 96.875 32 1 0 5297 5328 425302177 425302146 3.000000e-03 54.7
135 TraesCS2A01G059700 chrUn 96.875 32 1 0 5297 5328 428230395 428230364 3.000000e-03 54.7
136 TraesCS2A01G059700 chrUn 88.889 45 2 2 5295 5338 99106852 99106810 1.200000e-02 52.8
137 TraesCS2A01G059700 chr6D 84.884 86 10 3 894 978 465547272 465547189 4.420000e-12 84.2
138 TraesCS2A01G059700 chr6D 85.000 80 4 3 5302 5381 264679074 264679145 2.660000e-09 75.0
139 TraesCS2A01G059700 chr6D 91.071 56 2 3 5300 5352 464266183 464266238 9.560000e-09 73.1
140 TraesCS2A01G059700 chr6D 89.091 55 3 3 5301 5352 34582458 34582512 1.600000e-06 65.8
141 TraesCS2A01G059700 chr6D 89.091 55 3 3 5301 5352 361526284 361526338 1.600000e-06 65.8
142 TraesCS2A01G059700 chr6D 87.500 56 3 4 5301 5352 445729238 445729183 2.070000e-05 62.1
143 TraesCS2A01G059700 chr6D 85.714 56 5 3 5300 5352 27188546 27188601 1.000000e-03 56.5
144 TraesCS2A01G059700 chr4B 83.908 87 9 5 5299 5381 489376197 489376112 2.050000e-10 78.7
145 TraesCS2A01G059700 chr4B 82.558 86 11 3 894 978 5743901 5743819 9.560000e-09 73.1
146 TraesCS2A01G059700 chr4B 84.146 82 6 4 5302 5381 400680974 400680898 9.560000e-09 73.1
147 TraesCS2A01G059700 chr4B 87.931 58 4 2 5290 5344 119852025 119851968 1.600000e-06 65.8
148 TraesCS2A01G059700 chr1D 87.692 65 6 2 5319 5381 49932270 49932206 2.660000e-09 75.0
149 TraesCS2A01G059700 chr1D 93.478 46 1 2 5337 5381 446426916 446426960 4.450000e-07 67.6
150 TraesCS2A01G059700 chr1D 81.176 85 12 3 5300 5381 30101023 30101106 1.600000e-06 65.8
151 TraesCS2A01G059700 chr1D 79.798 99 8 7 5295 5381 158099024 158098926 2.070000e-05 62.1
152 TraesCS2A01G059700 chr1D 80.851 94 4 7 5302 5381 381306992 381307085 2.070000e-05 62.1
153 TraesCS2A01G059700 chr1D 97.222 36 1 0 5346 5381 381307030 381306995 2.070000e-05 62.1
154 TraesCS2A01G059700 chr1D 85.714 56 5 2 5300 5352 37532127 37532182 1.000000e-03 56.5
155 TraesCS2A01G059700 chr1D 96.970 33 1 0 5349 5381 145938640 145938608 1.000000e-03 56.5
156 TraesCS2A01G059700 chr1D 94.444 36 2 0 5346 5381 313208314 313208279 1.000000e-03 56.5
157 TraesCS2A01G059700 chr1D 92.500 40 2 1 5300 5338 366687690 366687729 1.000000e-03 56.5
158 TraesCS2A01G059700 chr1D 92.500 40 2 1 5300 5338 485718754 485718715 1.000000e-03 56.5
159 TraesCS2A01G059700 chr1D 78.261 92 15 4 887 977 226913221 226913134 3.000000e-03 54.7
160 TraesCS2A01G059700 chr1D 100.000 28 0 0 5354 5381 128673624 128673597 1.200000e-02 52.8
161 TraesCS2A01G059700 chr1D 78.824 85 13 5 894 977 240584428 240584348 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G059700 chr2A 25469383 25476253 6870 True 12689.000000 12689 100.000000 1 6871 1 chr2A.!!$R2 6870
1 TraesCS2A01G059700 chr2A 25456362 25462252 5890 True 2567.666667 4599 97.703333 2358 6871 3 chr2A.!!$R5 4513
2 TraesCS2A01G059700 chr2A 136636256 136638777 2521 False 1730.500000 2182 92.181500 2358 4946 2 chr2A.!!$F4 2588
3 TraesCS2A01G059700 chr2A 711852311 711853228 917 False 1013.000000 1013 86.584000 3769 4727 1 chr2A.!!$F1 958
4 TraesCS2A01G059700 chr2A 760118870 760119889 1019 False 867.000000 867 82.250000 1049 2065 1 chr2A.!!$F2 1016
5 TraesCS2A01G059700 chr2A 25542989 25546933 3944 False 323.500000 416 84.770500 1171 1817 2 chr2A.!!$F3 646
6 TraesCS2A01G059700 chr5A 692380334 692383176 2842 False 4037.000000 4037 92.353000 2132 4986 1 chr5A.!!$F5 2854
7 TraesCS2A01G059700 chr5A 608273398 608276277 2879 False 3969.000000 3969 91.687000 2176 5051 1 chr5A.!!$F4 2875
8 TraesCS2A01G059700 chr5A 79274464 79276924 2460 True 3613.000000 3613 92.985000 2402 4915 1 chr5A.!!$R2 2513
9 TraesCS2A01G059700 chr2D 68694862 68696274 1412 True 1862.000000 1862 90.533000 2358 3771 1 chr2D.!!$R3 1413
10 TraesCS2A01G059700 chr2D 68567958 68571123 3165 True 1364.500000 1855 87.427000 2243 4915 2 chr2D.!!$R8 2672
11 TraesCS2A01G059700 chr2D 68591579 68594725 3146 True 1315.500000 1779 86.845500 2240 4915 2 chr2D.!!$R9 2675
12 TraesCS2A01G059700 chr2D 649601156 649601782 626 False 765.000000 765 88.598000 1 645 1 chr2D.!!$F3 644
13 TraesCS2A01G059700 chr2D 68659756 68660359 603 True 725.000000 725 88.399000 4087 4692 1 chr2D.!!$R2 605
14 TraesCS2A01G059700 chr2D 649300270 649301008 738 False 376.500000 486 88.273500 3941 4629 2 chr2D.!!$F4 688
15 TraesCS2A01G059700 chr3D 510910062 510911613 1551 True 1847.000000 1847 88.506000 2244 3771 1 chr3D.!!$R5 1527
16 TraesCS2A01G059700 chr2B 756298772 756300989 2217 True 1295.000000 1474 89.996000 2640 4650 2 chr2B.!!$R6 2010
17 TraesCS2A01G059700 chr2B 673714707 673715517 810 True 948.000000 948 87.835000 3769 4583 1 chr2B.!!$R1 814
18 TraesCS2A01G059700 chr2B 705188647 705189291 644 False 592.000000 592 83.385000 1 643 1 chr2B.!!$F2 642
19 TraesCS2A01G059700 chr2B 128379382 128383148 3766 True 435.500000 507 91.590500 3769 5051 2 chr2B.!!$R5 1282
20 TraesCS2A01G059700 chr7B 733091003 733092118 1115 False 1170.000000 1170 85.556000 3769 4932 1 chr7B.!!$F2 1163
21 TraesCS2A01G059700 chr7B 726381124 726382085 961 True 1029.000000 1029 86.030000 4066 5051 1 chr7B.!!$R3 985
22 TraesCS2A01G059700 chr7B 726372418 726373380 962 True 1007.000000 1007 85.657000 4066 5051 1 chr7B.!!$R2 985
23 TraesCS2A01G059700 chr4A 603723011 603723981 970 True 1055.000000 1055 86.400000 4065 5051 1 chr4A.!!$R1 986
24 TraesCS2A01G059700 chr4D 120834683 120835629 946 True 1016.000000 1016 86.058000 4065 5051 1 chr4D.!!$R2 986
25 TraesCS2A01G059700 chr5D 518872779 518873809 1030 False 928.000000 928 83.237000 1048 2065 1 chr5D.!!$F2 1017
26 TraesCS2A01G059700 chr5D 529800202 529800712 510 False 686.000000 686 90.909000 1 514 1 chr5D.!!$F3 513
27 TraesCS2A01G059700 chr6B 543841931 543842811 880 False 863.000000 863 84.724000 4152 5051 1 chr6B.!!$F5 899
28 TraesCS2A01G059700 chr6B 171208982 171210350 1368 False 711.000000 926 88.196500 3769 5050 2 chr6B.!!$F7 1281
29 TraesCS2A01G059700 chr5B 652520536 652521567 1031 False 896.000000 896 82.659000 1048 2065 1 chr5B.!!$F2 1017
30 TraesCS2A01G059700 chr7D 635015758 635016540 782 True 887.000000 887 87.057000 4065 4877 1 chr7D.!!$R6 812
31 TraesCS2A01G059700 chr7D 573371965 573372621 656 True 813.000000 813 89.410000 1 644 1 chr7D.!!$R5 643
32 TraesCS2A01G059700 chr3A 57723561 57724190 629 True 806.000000 806 89.612000 1 645 1 chr3A.!!$R1 644
33 TraesCS2A01G059700 chr3A 265168926 265171318 2392 False 585.000000 809 87.212000 2132 4465 2 chr3A.!!$F3 2333
34 TraesCS2A01G059700 chr3A 629056620 629057535 915 False 494.000000 494 76.957000 1171 2060 1 chr3A.!!$F2 889
35 TraesCS2A01G059700 chr6A 22027275 22027851 576 True 736.000000 736 89.691000 1 579 1 chr6A.!!$R1 578
36 TraesCS2A01G059700 chr1B 231356387 231359757 3370 False 720.500000 728 86.974500 1 645 2 chr1B.!!$F3 644
37 TraesCS2A01G059700 chr3B 779378341 779378984 643 True 671.000000 671 85.780000 4 644 1 chr3B.!!$R4 640
38 TraesCS2A01G059700 chr3B 745540255 745541130 875 False 586.000000 586 79.162000 1171 2032 1 chr3B.!!$F4 861
39 TraesCS2A01G059700 chr3B 744545672 744546587 915 True 516.000000 516 77.586000 1171 2060 1 chr3B.!!$R2 889
40 TraesCS2A01G059700 chr3B 745473960 745474724 764 True 505.000000 505 79.070000 1181 1933 1 chr3B.!!$R3 752
41 TraesCS2A01G059700 chr3B 744728705 744729487 782 False 475.000000 475 78.089000 1171 1933 1 chr3B.!!$F2 762
42 TraesCS2A01G059700 chr3B 744847278 744848060 782 False 475.000000 475 78.089000 1171 1933 1 chr3B.!!$F3 762

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 692 0.178990 GCTCCTGGGACCTGTGTTTT 60.179 55.000 0.00 0.00 0.00 2.43 F
1001 1038 0.030092 TCCCCCAATTCTCCGAGGAT 60.030 55.000 0.00 0.00 0.00 3.24 F
1009 1046 0.035439 TTCTCCGAGGATGGCAAACC 60.035 55.000 0.00 0.00 0.00 3.27 F
1014 1051 0.168128 CGAGGATGGCAAACCGAAAC 59.832 55.000 0.00 0.00 39.70 2.78 F
2073 5463 0.239347 GTCATCAAGGTGTGCAGCAC 59.761 55.000 19.37 19.37 46.97 4.40 F
3574 7254 1.079681 GTGACACGTCCGCCCATTA 60.080 57.895 0.00 0.00 0.00 1.90 F
5056 13098 0.109342 CCGAAGCATGGCTCCCTTAT 59.891 55.000 0.00 0.00 38.25 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2122 5512 0.040058 AGCCCTTGATGACATTGGCA 59.960 50.000 16.60 0.00 42.02 4.92 R
2123 5513 0.743097 GAGCCCTTGATGACATTGGC 59.257 55.000 9.83 9.83 40.80 4.52 R
2354 5751 0.881796 GTTGGTTGAAGTGGCTAGGC 59.118 55.000 9.85 9.85 0.00 3.93 R
2795 6452 6.915843 GGATGTGTAAAAACGTTCACAGATTT 59.084 34.615 20.67 11.27 42.61 2.17 R
3734 7414 1.061546 GGGTGTTCAGGTAGGGTGAA 58.938 55.000 0.00 0.00 0.00 3.18 R
5396 14800 0.704076 CACCTCCCTCCATCCCAAAA 59.296 55.000 0.00 0.00 0.00 2.44 R
6127 15531 2.019249 CATGCAGACCACCACCATTAG 58.981 52.381 0.00 0.00 0.00 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
283 291 0.881796 CGGGGAAAAGGCTTTCACTC 59.118 55.000 13.76 10.33 43.43 3.51
296 305 0.997363 TTCACTCGAGGTAGAGGGGA 59.003 55.000 18.41 0.00 41.79 4.81
343 355 1.018910 GGCGCCTTTTATAGCCGAAA 58.981 50.000 22.15 0.00 40.17 3.46
374 388 4.575973 GGCAGCATGAGGGCGGAT 62.576 66.667 0.00 0.00 39.69 4.18
478 494 1.376609 GCCTTCGCATTGATTCCCGT 61.377 55.000 0.00 0.00 34.03 5.28
516 532 2.430921 CGACGAAGCGGCTGTCTT 60.431 61.111 15.72 0.00 29.68 3.01
527 543 1.005630 GCTGTCTTGCTGACTCGGT 60.006 57.895 10.73 0.00 45.54 4.69
645 682 1.074248 GAAAAACGGGCTCCTGGGA 59.926 57.895 0.00 0.00 0.00 4.37
646 683 1.228459 AAAAACGGGCTCCTGGGAC 60.228 57.895 0.00 0.00 0.00 4.46
647 684 2.708593 AAAAACGGGCTCCTGGGACC 62.709 60.000 0.00 0.00 0.00 4.46
648 685 4.658786 AACGGGCTCCTGGGACCT 62.659 66.667 5.65 0.00 0.00 3.85
651 688 3.721706 GGGCTCCTGGGACCTGTG 61.722 72.222 5.98 0.00 0.00 3.66
652 689 2.930562 GGCTCCTGGGACCTGTGT 60.931 66.667 0.00 0.00 0.00 3.72
653 690 2.529744 GGCTCCTGGGACCTGTGTT 61.530 63.158 0.00 0.00 0.00 3.32
654 691 1.456287 GCTCCTGGGACCTGTGTTT 59.544 57.895 0.00 0.00 0.00 2.83
655 692 0.178990 GCTCCTGGGACCTGTGTTTT 60.179 55.000 0.00 0.00 0.00 2.43
656 693 1.609208 CTCCTGGGACCTGTGTTTTG 58.391 55.000 0.00 0.00 0.00 2.44
657 694 1.142870 CTCCTGGGACCTGTGTTTTGA 59.857 52.381 0.00 0.00 0.00 2.69
658 695 1.780309 TCCTGGGACCTGTGTTTTGAT 59.220 47.619 0.00 0.00 0.00 2.57
659 696 2.176798 TCCTGGGACCTGTGTTTTGATT 59.823 45.455 0.00 0.00 0.00 2.57
660 697 2.965147 CCTGGGACCTGTGTTTTGATTT 59.035 45.455 0.00 0.00 0.00 2.17
661 698 3.387699 CCTGGGACCTGTGTTTTGATTTT 59.612 43.478 0.00 0.00 0.00 1.82
662 699 4.501400 CCTGGGACCTGTGTTTTGATTTTC 60.501 45.833 0.00 0.00 0.00 2.29
663 700 3.067461 TGGGACCTGTGTTTTGATTTTCG 59.933 43.478 0.00 0.00 0.00 3.46
664 701 3.552068 GGGACCTGTGTTTTGATTTTCGG 60.552 47.826 0.00 0.00 0.00 4.30
665 702 3.067601 GGACCTGTGTTTTGATTTTCGGT 59.932 43.478 0.00 0.00 0.00 4.69
666 703 4.440940 GGACCTGTGTTTTGATTTTCGGTT 60.441 41.667 0.00 0.00 0.00 4.44
667 704 5.079689 ACCTGTGTTTTGATTTTCGGTTT 57.920 34.783 0.00 0.00 0.00 3.27
668 705 4.867608 ACCTGTGTTTTGATTTTCGGTTTG 59.132 37.500 0.00 0.00 0.00 2.93
669 706 5.105752 CCTGTGTTTTGATTTTCGGTTTGA 58.894 37.500 0.00 0.00 0.00 2.69
670 707 5.231991 CCTGTGTTTTGATTTTCGGTTTGAG 59.768 40.000 0.00 0.00 0.00 3.02
671 708 4.564769 TGTGTTTTGATTTTCGGTTTGAGC 59.435 37.500 0.00 0.00 0.00 4.26
672 709 4.803613 GTGTTTTGATTTTCGGTTTGAGCT 59.196 37.500 0.00 0.00 0.00 4.09
673 710 5.290885 GTGTTTTGATTTTCGGTTTGAGCTT 59.709 36.000 0.00 0.00 0.00 3.74
674 711 5.872070 TGTTTTGATTTTCGGTTTGAGCTTT 59.128 32.000 0.00 0.00 0.00 3.51
675 712 6.370166 TGTTTTGATTTTCGGTTTGAGCTTTT 59.630 30.769 0.00 0.00 0.00 2.27
676 713 6.976636 TTTGATTTTCGGTTTGAGCTTTTT 57.023 29.167 0.00 0.00 0.00 1.94
706 743 1.934463 CCGAGATGGCCGAATTTCG 59.066 57.895 11.81 11.81 40.07 3.46
719 756 4.981389 CGAATTTCGGCCATTTTCAAAA 57.019 36.364 10.95 0.00 36.00 2.44
720 757 5.335827 CGAATTTCGGCCATTTTCAAAAA 57.664 34.783 10.95 0.00 36.00 1.94
721 758 5.925907 CGAATTTCGGCCATTTTCAAAAAT 58.074 33.333 10.95 0.00 36.29 1.82
722 759 6.369799 CGAATTTCGGCCATTTTCAAAAATT 58.630 32.000 10.95 1.61 34.90 1.82
723 760 6.855403 CGAATTTCGGCCATTTTCAAAAATTT 59.145 30.769 10.95 0.00 34.90 1.82
724 761 7.059374 CGAATTTCGGCCATTTTCAAAAATTTC 59.941 33.333 10.95 0.00 34.90 2.17
725 762 4.981389 TCGGCCATTTTCAAAAATTTCG 57.019 36.364 2.24 3.97 36.52 3.46
726 763 3.743396 TCGGCCATTTTCAAAAATTTCGG 59.257 39.130 2.24 0.00 36.52 4.30
727 764 3.666638 CGGCCATTTTCAAAAATTTCGGC 60.667 43.478 14.87 14.87 41.01 5.54
728 765 3.501828 GGCCATTTTCAAAAATTTCGGCT 59.498 39.130 19.29 0.00 41.26 5.52
729 766 4.465921 GCCATTTTCAAAAATTTCGGCTG 58.534 39.130 15.51 0.00 39.74 4.85
730 767 4.213059 GCCATTTTCAAAAATTTCGGCTGA 59.787 37.500 15.51 0.00 39.74 4.26
731 768 5.277731 GCCATTTTCAAAAATTTCGGCTGAA 60.278 36.000 3.13 3.13 39.74 3.02
758 795 9.733219 ATTTAACCAAAATTTGACTGCAATTTG 57.267 25.926 7.37 0.00 33.91 2.32
759 796 6.998968 AACCAAAATTTGACTGCAATTTGA 57.001 29.167 7.37 0.00 36.67 2.69
760 797 7.571080 AACCAAAATTTGACTGCAATTTGAT 57.429 28.000 7.37 0.00 36.67 2.57
761 798 7.571080 ACCAAAATTTGACTGCAATTTGATT 57.429 28.000 7.37 0.00 36.67 2.57
762 799 7.998580 ACCAAAATTTGACTGCAATTTGATTT 58.001 26.923 7.37 0.00 36.67 2.17
763 800 9.118300 ACCAAAATTTGACTGCAATTTGATTTA 57.882 25.926 7.37 0.00 36.67 1.40
764 801 9.947669 CCAAAATTTGACTGCAATTTGATTTAA 57.052 25.926 7.37 0.00 36.67 1.52
772 809 8.772705 TGACTGCAATTTGATTTAAATTTGACC 58.227 29.630 12.44 0.00 44.49 4.02
773 810 8.674263 ACTGCAATTTGATTTAAATTTGACCA 57.326 26.923 12.44 0.00 44.49 4.02
774 811 9.118300 ACTGCAATTTGATTTAAATTTGACCAA 57.882 25.926 12.44 5.23 44.49 3.67
775 812 9.947669 CTGCAATTTGATTTAAATTTGACCAAA 57.052 25.926 12.44 12.19 44.49 3.28
801 838 8.724229 AATTTCCTAAATTTGAGCAATTTCTGC 58.276 29.630 0.00 0.00 43.00 4.26
817 854 8.958043 GCAATTTCTGCCTAAATATACTTTTCG 58.042 33.333 0.00 0.00 46.13 3.46
818 855 8.958043 CAATTTCTGCCTAAATATACTTTTCGC 58.042 33.333 0.00 0.00 0.00 4.70
819 856 6.613755 TTCTGCCTAAATATACTTTTCGCC 57.386 37.500 0.00 0.00 0.00 5.54
820 857 5.925509 TCTGCCTAAATATACTTTTCGCCT 58.074 37.500 0.00 0.00 0.00 5.52
821 858 5.989777 TCTGCCTAAATATACTTTTCGCCTC 59.010 40.000 0.00 0.00 0.00 4.70
822 859 5.676552 TGCCTAAATATACTTTTCGCCTCA 58.323 37.500 0.00 0.00 0.00 3.86
823 860 5.758296 TGCCTAAATATACTTTTCGCCTCAG 59.242 40.000 0.00 0.00 0.00 3.35
824 861 5.179555 GCCTAAATATACTTTTCGCCTCAGG 59.820 44.000 0.00 0.00 0.00 3.86
825 862 5.179555 CCTAAATATACTTTTCGCCTCAGGC 59.820 44.000 5.22 5.22 46.75 4.85
843 880 1.934463 CCGAGATGGCCGAAATTCG 59.066 57.895 8.62 8.62 40.07 3.34
853 890 3.526825 CGAAATTCGGCCGAAATCC 57.473 52.632 41.31 29.08 37.69 3.01
854 891 0.730265 CGAAATTCGGCCGAAATCCA 59.270 50.000 41.31 22.04 37.69 3.41
855 892 1.531058 CGAAATTCGGCCGAAATCCAC 60.531 52.381 41.31 27.17 37.69 4.02
856 893 1.743394 GAAATTCGGCCGAAATCCACT 59.257 47.619 41.31 23.27 37.69 4.00
857 894 1.834188 AATTCGGCCGAAATCCACTT 58.166 45.000 41.31 27.41 37.69 3.16
858 895 1.834188 ATTCGGCCGAAATCCACTTT 58.166 45.000 41.31 21.74 37.69 2.66
859 896 1.611519 TTCGGCCGAAATCCACTTTT 58.388 45.000 37.13 0.00 0.00 2.27
860 897 1.611519 TCGGCCGAAATCCACTTTTT 58.388 45.000 28.99 0.00 0.00 1.94
861 898 1.268352 TCGGCCGAAATCCACTTTTTG 59.732 47.619 28.99 0.00 0.00 2.44
862 899 1.428448 GGCCGAAATCCACTTTTTGC 58.572 50.000 0.00 0.00 0.00 3.68
863 900 1.059942 GCCGAAATCCACTTTTTGCG 58.940 50.000 0.00 0.00 0.00 4.85
864 901 1.601914 GCCGAAATCCACTTTTTGCGT 60.602 47.619 0.00 0.00 0.00 5.24
865 902 2.315901 CCGAAATCCACTTTTTGCGTC 58.684 47.619 0.00 0.00 0.00 5.19
866 903 2.315901 CGAAATCCACTTTTTGCGTCC 58.684 47.619 0.00 0.00 0.00 4.79
867 904 2.315901 GAAATCCACTTTTTGCGTCCG 58.684 47.619 0.00 0.00 0.00 4.79
868 905 1.600023 AATCCACTTTTTGCGTCCGA 58.400 45.000 0.00 0.00 0.00 4.55
869 906 1.600023 ATCCACTTTTTGCGTCCGAA 58.400 45.000 0.00 0.00 0.00 4.30
870 907 1.380524 TCCACTTTTTGCGTCCGAAA 58.619 45.000 0.00 0.00 0.00 3.46
871 908 1.743958 TCCACTTTTTGCGTCCGAAAA 59.256 42.857 0.00 0.00 34.13 2.29
872 909 2.359531 TCCACTTTTTGCGTCCGAAAAT 59.640 40.909 0.00 0.00 34.63 1.82
873 910 2.724174 CCACTTTTTGCGTCCGAAAATC 59.276 45.455 0.00 0.00 34.63 2.17
874 911 3.367607 CACTTTTTGCGTCCGAAAATCA 58.632 40.909 0.00 0.00 34.63 2.57
875 912 3.794028 CACTTTTTGCGTCCGAAAATCAA 59.206 39.130 0.00 0.00 34.63 2.57
876 913 4.266502 CACTTTTTGCGTCCGAAAATCAAA 59.733 37.500 0.00 0.00 34.63 2.69
877 914 4.865365 ACTTTTTGCGTCCGAAAATCAAAA 59.135 33.333 0.00 0.00 34.63 2.44
878 915 4.763594 TTTTGCGTCCGAAAATCAAAAC 57.236 36.364 0.00 0.00 33.39 2.43
879 916 3.422417 TTGCGTCCGAAAATCAAAACA 57.578 38.095 0.00 0.00 0.00 2.83
880 917 2.722071 TGCGTCCGAAAATCAAAACAC 58.278 42.857 0.00 0.00 0.00 3.32
881 918 2.097629 TGCGTCCGAAAATCAAAACACA 59.902 40.909 0.00 0.00 0.00 3.72
882 919 2.719046 GCGTCCGAAAATCAAAACACAG 59.281 45.455 0.00 0.00 0.00 3.66
883 920 3.790789 GCGTCCGAAAATCAAAACACAGT 60.791 43.478 0.00 0.00 0.00 3.55
884 921 3.966218 CGTCCGAAAATCAAAACACAGTC 59.034 43.478 0.00 0.00 0.00 3.51
885 922 4.260620 CGTCCGAAAATCAAAACACAGTCT 60.261 41.667 0.00 0.00 0.00 3.24
886 923 4.970003 GTCCGAAAATCAAAACACAGTCTG 59.030 41.667 0.00 0.00 0.00 3.51
892 929 1.208535 TCAAAACACAGTCTGGGACGT 59.791 47.619 9.69 0.00 37.67 4.34
899 936 1.153061 AGTCTGGGACGTGACTGGA 59.847 57.895 5.55 0.00 41.61 3.86
906 943 1.658673 GACGTGACTGGACCGTCTT 59.341 57.895 14.67 3.18 45.49 3.01
971 1008 4.218578 CGCGGCTGGAGATGCTCT 62.219 66.667 0.00 0.00 0.00 4.09
972 1009 2.188994 GCGGCTGGAGATGCTCTT 59.811 61.111 0.00 0.00 0.00 2.85
974 1011 0.599728 GCGGCTGGAGATGCTCTTAG 60.600 60.000 0.00 0.00 0.00 2.18
975 1012 0.749649 CGGCTGGAGATGCTCTTAGT 59.250 55.000 0.00 0.00 0.00 2.24
976 1013 1.137872 CGGCTGGAGATGCTCTTAGTT 59.862 52.381 0.00 0.00 0.00 2.24
977 1014 2.419297 CGGCTGGAGATGCTCTTAGTTT 60.419 50.000 0.00 0.00 0.00 2.66
978 1015 3.615155 GGCTGGAGATGCTCTTAGTTTT 58.385 45.455 0.00 0.00 0.00 2.43
979 1016 3.625313 GGCTGGAGATGCTCTTAGTTTTC 59.375 47.826 0.00 0.00 0.00 2.29
981 1018 4.094146 GCTGGAGATGCTCTTAGTTTTCAC 59.906 45.833 0.00 0.00 0.00 3.18
982 1019 5.486526 CTGGAGATGCTCTTAGTTTTCACT 58.513 41.667 0.00 0.00 36.99 3.41
984 1021 4.873259 GGAGATGCTCTTAGTTTTCACTCC 59.127 45.833 0.00 0.00 34.06 3.85
985 1022 4.837972 AGATGCTCTTAGTTTTCACTCCC 58.162 43.478 0.00 0.00 34.06 4.30
986 1023 3.418684 TGCTCTTAGTTTTCACTCCCC 57.581 47.619 0.00 0.00 34.06 4.81
987 1024 2.039879 TGCTCTTAGTTTTCACTCCCCC 59.960 50.000 0.00 0.00 34.06 5.40
988 1025 2.039879 GCTCTTAGTTTTCACTCCCCCA 59.960 50.000 0.00 0.00 34.06 4.96
990 1027 4.811063 GCTCTTAGTTTTCACTCCCCCAAT 60.811 45.833 0.00 0.00 34.06 3.16
991 1028 5.325239 CTCTTAGTTTTCACTCCCCCAATT 58.675 41.667 0.00 0.00 34.06 2.32
992 1029 5.321927 TCTTAGTTTTCACTCCCCCAATTC 58.678 41.667 0.00 0.00 34.06 2.17
993 1030 3.903530 AGTTTTCACTCCCCCAATTCT 57.096 42.857 0.00 0.00 0.00 2.40
994 1031 3.767711 AGTTTTCACTCCCCCAATTCTC 58.232 45.455 0.00 0.00 0.00 2.87
995 1032 2.826128 GTTTTCACTCCCCCAATTCTCC 59.174 50.000 0.00 0.00 0.00 3.71
996 1033 0.618458 TTCACTCCCCCAATTCTCCG 59.382 55.000 0.00 0.00 0.00 4.63
997 1034 0.252513 TCACTCCCCCAATTCTCCGA 60.253 55.000 0.00 0.00 0.00 4.55
998 1035 0.179000 CACTCCCCCAATTCTCCGAG 59.821 60.000 0.00 0.00 0.00 4.63
999 1036 0.983378 ACTCCCCCAATTCTCCGAGG 60.983 60.000 0.00 0.00 0.00 4.63
1000 1037 0.691078 CTCCCCCAATTCTCCGAGGA 60.691 60.000 0.00 0.00 0.00 3.71
1001 1038 0.030092 TCCCCCAATTCTCCGAGGAT 60.030 55.000 0.00 0.00 0.00 3.24
1002 1039 0.109342 CCCCCAATTCTCCGAGGATG 59.891 60.000 0.00 0.00 0.00 3.51
1003 1040 0.109342 CCCCAATTCTCCGAGGATGG 59.891 60.000 3.15 3.15 0.00 3.51
1004 1041 0.536006 CCCAATTCTCCGAGGATGGC 60.536 60.000 4.38 0.00 0.00 4.40
1005 1042 0.181114 CCAATTCTCCGAGGATGGCA 59.819 55.000 0.00 0.00 0.00 4.92
1006 1043 1.408683 CCAATTCTCCGAGGATGGCAA 60.409 52.381 0.00 0.00 0.00 4.52
1007 1044 2.368439 CAATTCTCCGAGGATGGCAAA 58.632 47.619 0.00 0.00 0.00 3.68
1008 1045 2.044123 ATTCTCCGAGGATGGCAAAC 57.956 50.000 0.00 0.00 0.00 2.93
1009 1046 0.035439 TTCTCCGAGGATGGCAAACC 60.035 55.000 0.00 0.00 0.00 3.27
1010 1047 1.815421 CTCCGAGGATGGCAAACCG 60.815 63.158 0.00 0.00 39.70 4.44
1011 1048 2.238847 CTCCGAGGATGGCAAACCGA 62.239 60.000 0.00 0.00 39.70 4.69
1012 1049 1.376683 CCGAGGATGGCAAACCGAA 60.377 57.895 0.00 0.00 39.70 4.30
1013 1050 0.958382 CCGAGGATGGCAAACCGAAA 60.958 55.000 0.00 0.00 39.70 3.46
1014 1051 0.168128 CGAGGATGGCAAACCGAAAC 59.832 55.000 0.00 0.00 39.70 2.78
1015 1052 0.526211 GAGGATGGCAAACCGAAACC 59.474 55.000 0.00 0.00 39.70 3.27
1016 1053 0.898326 AGGATGGCAAACCGAAACCC 60.898 55.000 0.00 0.00 39.70 4.11
1017 1054 0.898326 GGATGGCAAACCGAAACCCT 60.898 55.000 0.00 0.00 39.70 4.34
1018 1055 0.526211 GATGGCAAACCGAAACCCTC 59.474 55.000 0.00 0.00 39.70 4.30
1020 1057 2.254350 GCAAACCGAAACCCTCGC 59.746 61.111 0.00 0.00 46.71 5.03
1021 1058 2.951458 CAAACCGAAACCCTCGCC 59.049 61.111 0.00 0.00 46.71 5.54
1022 1059 2.667199 AAACCGAAACCCTCGCCG 60.667 61.111 0.00 0.00 46.71 6.46
1066 1103 4.241555 CGGGGCTGCTAATCGGCT 62.242 66.667 0.00 0.00 46.32 5.52
1132 1169 2.659016 CTGGAACGCTCTGGCTCA 59.341 61.111 0.00 0.00 36.09 4.26
1140 1177 1.524165 GCTCTGGCTCAGCATGGAG 60.524 63.158 0.00 3.64 36.82 3.86
1143 1180 0.757512 TCTGGCTCAGCATGGAGATC 59.242 55.000 0.00 0.00 37.05 2.75
1158 1195 0.821517 AGATCATGGCAACGGTCGTA 59.178 50.000 0.00 0.00 42.51 3.43
1159 1196 1.412710 AGATCATGGCAACGGTCGTAT 59.587 47.619 0.00 0.00 42.51 3.06
1161 1198 3.258372 AGATCATGGCAACGGTCGTATAT 59.742 43.478 0.00 0.00 42.51 0.86
1162 1199 2.749776 TCATGGCAACGGTCGTATATG 58.250 47.619 0.00 0.66 42.51 1.78
1163 1200 2.362717 TCATGGCAACGGTCGTATATGA 59.637 45.455 0.00 2.84 42.51 2.15
1230 1273 2.663196 GCTAGCACGACCTGGGTT 59.337 61.111 10.63 0.00 0.00 4.11
1379 1422 2.596338 TGCACCTCGTCCTCGACA 60.596 61.111 0.00 0.00 41.35 4.35
1450 4809 4.634133 GTCGCGGACGTGGTCACA 62.634 66.667 6.13 0.00 41.18 3.58
1451 4810 4.337060 TCGCGGACGTGGTCACAG 62.337 66.667 6.13 0.00 41.18 3.66
1501 4860 2.044806 GCTGTGTCCACCTCACCTGT 62.045 60.000 0.00 0.00 35.25 4.00
1588 4947 3.118261 TCCAAGAGCTCGCCTTTATCAAT 60.118 43.478 8.37 0.00 0.00 2.57
1664 5023 3.721706 CCCGCCTCTTCCTTGGCT 61.722 66.667 0.00 0.00 46.42 4.75
1681 5040 1.990060 CTTCTGGAGGCTCCCGGAA 60.990 63.158 30.03 27.80 46.36 4.30
1721 5080 3.330720 CCGCCTTCCCCAACCTCT 61.331 66.667 0.00 0.00 0.00 3.69
1731 5108 2.125350 CAACCTCTGGGAGCTCGC 60.125 66.667 23.06 23.06 36.25 5.03
1760 5137 2.678580 TCGTCATGGAGGACCGCA 60.679 61.111 0.00 0.00 39.42 5.69
1765 5142 1.002134 CATGGAGGACCGCAACCTT 60.002 57.895 0.00 0.00 37.93 3.50
1781 5158 1.743252 CTTGCCTTCCTGCTCGACC 60.743 63.158 0.00 0.00 0.00 4.79
1852 5229 2.435586 CTCCGCCTTGTCAGCCAG 60.436 66.667 0.00 0.00 0.00 4.85
1881 5258 0.386476 TGCCTTCAGCTGTGCTTTTG 59.614 50.000 14.67 0.00 44.23 2.44
1898 5275 1.361204 TTGCATCTTGGAGGAGGTCA 58.639 50.000 0.00 0.00 0.00 4.02
1934 5311 1.449246 CGCCTGGAGAAGCTCTTGG 60.449 63.158 0.00 0.00 0.00 3.61
1945 5322 1.131638 AGCTCTTGGAGTGGACAACA 58.868 50.000 0.00 0.00 31.39 3.33
1946 5323 1.701847 AGCTCTTGGAGTGGACAACAT 59.298 47.619 0.00 0.00 31.39 2.71
1947 5324 1.808945 GCTCTTGGAGTGGACAACATG 59.191 52.381 0.00 0.00 31.39 3.21
1948 5325 2.430465 CTCTTGGAGTGGACAACATGG 58.570 52.381 0.00 0.00 0.00 3.66
1950 5327 1.073763 CTTGGAGTGGACAACATGGGA 59.926 52.381 0.00 0.00 0.00 4.37
1952 5329 1.004628 TGGAGTGGACAACATGGGATG 59.995 52.381 0.00 0.00 0.00 3.51
1953 5330 1.281867 GGAGTGGACAACATGGGATGA 59.718 52.381 0.00 0.00 0.00 2.92
1955 5332 1.988107 AGTGGACAACATGGGATGAGT 59.012 47.619 0.00 0.00 0.00 3.41
1956 5333 2.026822 AGTGGACAACATGGGATGAGTC 60.027 50.000 0.00 0.00 37.77 3.36
1959 5336 2.749621 GGACAACATGGGATGAGTCAAC 59.250 50.000 0.00 0.00 39.10 3.18
2015 5405 1.276421 AGCTGCGTGTTCTTGGATACT 59.724 47.619 0.00 0.00 37.61 2.12
2027 5417 3.055094 TCTTGGATACTTTCAGCCAGGAC 60.055 47.826 0.00 0.00 35.42 3.85
2033 5423 1.630369 ACTTTCAGCCAGGACAGCATA 59.370 47.619 0.00 0.00 0.00 3.14
2068 5458 4.379174 ACCGTCATCAAGGTGTGC 57.621 55.556 0.00 0.00 39.66 4.57
2069 5459 1.449782 ACCGTCATCAAGGTGTGCA 59.550 52.632 0.00 0.00 39.66 4.57
2070 5460 0.603707 ACCGTCATCAAGGTGTGCAG 60.604 55.000 0.00 0.00 39.66 4.41
2071 5461 1.499056 CGTCATCAAGGTGTGCAGC 59.501 57.895 0.00 0.00 0.00 5.25
2072 5462 1.229975 CGTCATCAAGGTGTGCAGCA 61.230 55.000 0.00 0.00 0.00 4.41
2073 5463 0.239347 GTCATCAAGGTGTGCAGCAC 59.761 55.000 19.37 19.37 46.97 4.40
2085 5475 3.143807 GTGCAGCACACTAGACTCTAG 57.856 52.381 21.22 11.06 46.41 2.43
2086 5476 2.490115 GTGCAGCACACTAGACTCTAGT 59.510 50.000 21.22 12.33 46.41 2.57
2087 5477 3.057174 GTGCAGCACACTAGACTCTAGTT 60.057 47.826 21.22 5.76 46.41 2.24
2088 5478 3.191581 TGCAGCACACTAGACTCTAGTTC 59.808 47.826 15.05 8.36 0.00 3.01
2089 5479 3.191581 GCAGCACACTAGACTCTAGTTCA 59.808 47.826 15.05 0.00 0.00 3.18
2090 5480 4.728534 CAGCACACTAGACTCTAGTTCAC 58.271 47.826 15.05 8.10 0.00 3.18
2091 5481 4.216472 CAGCACACTAGACTCTAGTTCACA 59.784 45.833 15.05 0.00 0.00 3.58
2092 5482 5.013547 AGCACACTAGACTCTAGTTCACAT 58.986 41.667 15.05 0.28 0.00 3.21
2093 5483 5.098893 GCACACTAGACTCTAGTTCACATG 58.901 45.833 15.05 10.05 0.00 3.21
2094 5484 5.336055 GCACACTAGACTCTAGTTCACATGT 60.336 44.000 15.05 7.31 0.00 3.21
2095 5485 6.127980 GCACACTAGACTCTAGTTCACATGTA 60.128 42.308 15.05 0.00 0.00 2.29
2096 5486 7.415765 GCACACTAGACTCTAGTTCACATGTAT 60.416 40.741 15.05 0.00 0.00 2.29
2097 5487 7.912773 CACACTAGACTCTAGTTCACATGTATG 59.087 40.741 15.05 4.29 0.00 2.39
2098 5488 6.915300 CACTAGACTCTAGTTCACATGTATGC 59.085 42.308 15.05 0.00 0.00 3.14
2099 5489 5.921962 AGACTCTAGTTCACATGTATGCA 57.078 39.130 0.00 0.00 0.00 3.96
2100 5490 6.477053 AGACTCTAGTTCACATGTATGCAT 57.523 37.500 3.79 3.79 35.32 3.96
2101 5491 6.882656 AGACTCTAGTTCACATGTATGCATT 58.117 36.000 3.54 0.00 31.99 3.56
2102 5492 7.334090 AGACTCTAGTTCACATGTATGCATTT 58.666 34.615 3.54 0.00 31.99 2.32
2103 5493 7.279536 AGACTCTAGTTCACATGTATGCATTTG 59.720 37.037 3.54 3.75 34.90 2.32
2104 5494 6.881065 ACTCTAGTTCACATGTATGCATTTGT 59.119 34.615 3.54 4.06 35.09 2.83
2105 5495 7.065085 ACTCTAGTTCACATGTATGCATTTGTC 59.935 37.037 3.54 5.25 35.09 3.18
2106 5496 5.963176 AGTTCACATGTATGCATTTGTCA 57.037 34.783 3.54 0.08 35.09 3.58
2107 5497 6.330004 AGTTCACATGTATGCATTTGTCAA 57.670 33.333 3.54 0.00 35.09 3.18
2108 5498 6.927416 AGTTCACATGTATGCATTTGTCAAT 58.073 32.000 3.54 0.00 35.09 2.57
2109 5499 8.054152 AGTTCACATGTATGCATTTGTCAATA 57.946 30.769 3.54 0.00 35.09 1.90
2110 5500 8.522003 AGTTCACATGTATGCATTTGTCAATAA 58.478 29.630 3.54 0.00 35.09 1.40
2111 5501 9.304731 GTTCACATGTATGCATTTGTCAATAAT 57.695 29.630 3.54 0.00 35.09 1.28
2144 5534 2.449464 CCAATGTCATCAAGGGCTCAA 58.551 47.619 0.00 0.00 0.00 3.02
2151 5541 6.855763 TGTCATCAAGGGCTCAAATTATTT 57.144 33.333 0.00 0.00 0.00 1.40
2258 5654 5.518847 CGTCTGTCGTATACAAATTGGACAT 59.481 40.000 3.32 0.00 37.74 3.06
2291 5687 1.134220 CCCATTAAGCTAGGGCGTTCA 60.134 52.381 0.00 0.00 44.37 3.18
2313 5710 6.557110 TCAAATATAAGCGCAACCCTAAAAC 58.443 36.000 11.47 0.00 0.00 2.43
2316 5713 8.349983 CAAATATAAGCGCAACCCTAAAACTAT 58.650 33.333 11.47 0.00 0.00 2.12
2354 5751 6.796785 AATTATGAGGATTTGAACCCAAGG 57.203 37.500 0.00 0.00 33.23 3.61
2388 5808 2.021457 ACCAACCACTGCTTGTGTTAC 58.979 47.619 9.00 0.00 44.81 2.50
2396 5816 3.428870 CACTGCTTGTGTTACGTTCTAGG 59.571 47.826 0.00 0.00 41.53 3.02
2407 5827 8.970020 TGTGTTACGTTCTAGGGAGAAATATAA 58.030 33.333 0.00 0.00 43.38 0.98
2589 6040 7.992180 ACACAAACAATTTCTGAACATCTTC 57.008 32.000 0.00 0.00 0.00 2.87
3516 7196 6.202762 GCTTGACACGGATATATGAAACATCA 59.797 38.462 0.00 0.00 0.00 3.07
3574 7254 1.079681 GTGACACGTCCGCCCATTA 60.080 57.895 0.00 0.00 0.00 1.90
3734 7414 5.262588 ACGTGCTTTCAAAAGGATCTTTT 57.737 34.783 0.00 0.00 38.62 2.27
4013 8453 7.166851 AGCATATTAGAAAGCATGCACTCTAT 58.833 34.615 21.98 15.09 44.90 1.98
4033 8473 7.332926 ACTCTATATTTGGCTGATGCGATAAAG 59.667 37.037 0.00 0.00 40.82 1.85
4165 8715 5.427157 TGCCAAGAATTAGGTCCTATACACA 59.573 40.000 0.00 0.00 0.00 3.72
4288 8842 4.672409 CTTCCTGGTGTGACAAAAGTTTC 58.328 43.478 0.00 0.00 0.00 2.78
4918 12956 3.377485 GGACGTGCTCTAGTTGTCTGATA 59.623 47.826 0.00 0.00 0.00 2.15
5025 13063 7.779798 ACTATACTACCCTTATACGGTTTGTGA 59.220 37.037 0.00 0.00 34.66 3.58
5051 13093 1.090052 GTGTACCGAAGCATGGCTCC 61.090 60.000 0.00 0.00 38.25 4.70
5052 13094 1.523938 GTACCGAAGCATGGCTCCC 60.524 63.158 0.00 0.00 38.25 4.30
5053 13095 1.689233 TACCGAAGCATGGCTCCCT 60.689 57.895 0.00 0.00 38.25 4.20
5054 13096 1.271840 TACCGAAGCATGGCTCCCTT 61.272 55.000 0.00 0.00 38.25 3.95
5055 13097 1.271840 ACCGAAGCATGGCTCCCTTA 61.272 55.000 0.00 0.00 38.25 2.69
5056 13098 0.109342 CCGAAGCATGGCTCCCTTAT 59.891 55.000 0.00 0.00 38.25 1.73
5057 13099 1.517242 CGAAGCATGGCTCCCTTATC 58.483 55.000 0.00 0.00 38.25 1.75
5058 13100 1.071385 CGAAGCATGGCTCCCTTATCT 59.929 52.381 0.00 0.00 38.25 1.98
5059 13101 2.486191 CGAAGCATGGCTCCCTTATCTT 60.486 50.000 0.00 0.00 38.25 2.40
5060 13102 3.244215 CGAAGCATGGCTCCCTTATCTTA 60.244 47.826 0.00 0.00 38.25 2.10
5067 13318 5.242795 TGGCTCCCTTATCTTAATTAGCC 57.757 43.478 0.00 0.00 46.71 3.93
5099 13350 1.954437 CACACTTGTATTGCACGCTG 58.046 50.000 0.00 0.00 0.00 5.18
5100 13351 0.874390 ACACTTGTATTGCACGCTGG 59.126 50.000 0.00 0.00 0.00 4.85
5272 13523 1.314730 TCCCGGTTTGCTTCAAAGAC 58.685 50.000 0.00 0.00 33.82 3.01
5280 13531 5.276820 CGGTTTGCTTCAAAGACCATTTTTC 60.277 40.000 0.00 0.00 33.82 2.29
5445 14849 6.392625 TCGATTAACTGCTAGCTGAACTAT 57.607 37.500 26.29 13.68 0.00 2.12
5517 14921 2.224548 GGTAAGGTGAGTGCCAAGTTCT 60.225 50.000 0.00 0.00 0.00 3.01
5533 14937 1.763545 GTTCTGGATAGAGGGTGGTCC 59.236 57.143 0.00 0.00 33.70 4.46
5696 15100 4.148838 TCTTAACTTTGGGGGTTGATGTG 58.851 43.478 0.00 0.00 0.00 3.21
5712 15116 3.853623 GTGAAAGCCACACTCAAGC 57.146 52.632 0.00 0.00 45.03 4.01
5715 15119 1.322442 GAAAGCCACACTCAAGCCTT 58.678 50.000 0.00 0.00 0.00 4.35
5718 15122 0.106519 AGCCACACTCAAGCCTTTGT 60.107 50.000 0.00 0.00 35.73 2.83
5805 15209 5.367945 TGGAGGTCCAGTTTATAACATCC 57.632 43.478 0.00 0.00 42.01 3.51
5856 15260 6.158023 ACCCTTTTGACCATATCTACTACG 57.842 41.667 0.00 0.00 0.00 3.51
5949 15353 0.671251 GAGTCGGCAGCAGCTAGTAT 59.329 55.000 0.00 0.00 41.70 2.12
5950 15354 0.671251 AGTCGGCAGCAGCTAGTATC 59.329 55.000 0.00 0.00 41.70 2.24
5951 15355 0.319125 GTCGGCAGCAGCTAGTATCC 60.319 60.000 0.00 0.00 41.70 2.59
6127 15531 5.914085 ATGATTTCTACTATTGCGCTCAC 57.086 39.130 9.73 0.00 0.00 3.51
6146 15550 1.635487 ACTAATGGTGGTGGTCTGCAT 59.365 47.619 0.00 0.00 0.00 3.96
6279 15683 3.007398 AGCCTCCTATTTAAGCCTGATCG 59.993 47.826 0.00 0.00 0.00 3.69
6309 15713 3.774766 TGAACATACCAGGTAGTGCATCT 59.225 43.478 5.31 0.00 0.00 2.90
6433 15857 6.122964 GCCTACTTTTAATCTGGGAATCAGT 58.877 40.000 0.00 0.00 43.76 3.41
6593 16017 3.325870 TCCTTGTGTAACTGATTCAGCG 58.674 45.455 13.64 0.00 38.04 5.18
6640 16064 5.054477 GCCGTTATGGTTTTATGCTAGAGA 58.946 41.667 0.00 0.00 41.21 3.10
6799 16223 0.322816 GAGCCTGCATCAGAAACCCA 60.323 55.000 0.00 0.00 32.44 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 132 3.691342 AGGCGCGCCTTCTGTACA 61.691 61.111 45.60 0.00 45.70 2.90
151 153 2.997897 GCCGACACCTCCAGGAGT 60.998 66.667 15.86 0.00 41.74 3.85
193 195 1.725557 GGAGAGATACGCAGGCGACA 61.726 60.000 21.62 7.91 42.83 4.35
202 205 0.389391 AACCATGGCGGAGAGATACG 59.611 55.000 13.04 0.00 38.63 3.06
283 291 1.075896 AGCCTTCCCCTCTACCTCG 60.076 63.158 0.00 0.00 0.00 4.63
296 305 1.893808 CGGTGAGCACAACAGCCTT 60.894 57.895 0.00 0.00 32.53 4.35
360 374 4.923942 CGCATCCGCCCTCATGCT 62.924 66.667 2.66 0.00 42.84 3.79
408 422 2.661866 GCGGTGCAGTGAAGACGT 60.662 61.111 0.00 0.00 0.00 4.34
478 494 1.617018 CCTCATCGCCTCAGTTCCCA 61.617 60.000 0.00 0.00 0.00 4.37
645 682 4.729227 AACCGAAAATCAAAACACAGGT 57.271 36.364 0.00 0.00 0.00 4.00
646 683 5.105752 TCAAACCGAAAATCAAAACACAGG 58.894 37.500 0.00 0.00 0.00 4.00
647 684 5.276348 GCTCAAACCGAAAATCAAAACACAG 60.276 40.000 0.00 0.00 0.00 3.66
648 685 4.564769 GCTCAAACCGAAAATCAAAACACA 59.435 37.500 0.00 0.00 0.00 3.72
649 686 4.803613 AGCTCAAACCGAAAATCAAAACAC 59.196 37.500 0.00 0.00 0.00 3.32
650 687 5.004922 AGCTCAAACCGAAAATCAAAACA 57.995 34.783 0.00 0.00 0.00 2.83
651 688 5.966636 AAGCTCAAACCGAAAATCAAAAC 57.033 34.783 0.00 0.00 0.00 2.43
652 689 6.976636 AAAAGCTCAAACCGAAAATCAAAA 57.023 29.167 0.00 0.00 0.00 2.44
653 690 6.976636 AAAAAGCTCAAACCGAAAATCAAA 57.023 29.167 0.00 0.00 0.00 2.69
688 725 1.934463 CGAAATTCGGCCATCTCGG 59.066 57.895 7.61 0.00 36.00 4.63
698 735 4.981389 TTTTGAAAATGGCCGAAATTCG 57.019 36.364 8.62 8.62 40.07 3.34
699 736 7.059374 CGAAATTTTTGAAAATGGCCGAAATTC 59.941 33.333 0.00 0.56 38.53 2.17
700 737 6.855403 CGAAATTTTTGAAAATGGCCGAAATT 59.145 30.769 0.00 0.00 38.53 1.82
701 738 6.369799 CGAAATTTTTGAAAATGGCCGAAAT 58.630 32.000 0.00 0.00 38.53 2.17
702 739 5.277538 CCGAAATTTTTGAAAATGGCCGAAA 60.278 36.000 0.00 0.00 38.53 3.46
703 740 4.212214 CCGAAATTTTTGAAAATGGCCGAA 59.788 37.500 0.00 0.00 38.53 4.30
704 741 3.743396 CCGAAATTTTTGAAAATGGCCGA 59.257 39.130 0.00 0.00 38.53 5.54
705 742 3.666638 GCCGAAATTTTTGAAAATGGCCG 60.667 43.478 13.79 11.43 38.25 6.13
706 743 3.501828 AGCCGAAATTTTTGAAAATGGCC 59.498 39.130 18.09 0.00 41.89 5.36
707 744 4.213059 TCAGCCGAAATTTTTGAAAATGGC 59.787 37.500 15.69 15.69 41.56 4.40
708 745 5.921004 TCAGCCGAAATTTTTGAAAATGG 57.079 34.783 2.71 2.11 38.53 3.16
721 758 7.793927 AATTTTGGTTAAATTTCAGCCGAAA 57.206 28.000 16.62 16.62 42.40 3.46
732 769 9.733219 CAAATTGCAGTCAAATTTTGGTTAAAT 57.267 25.926 9.18 1.99 38.08 1.40
733 770 8.950210 TCAAATTGCAGTCAAATTTTGGTTAAA 58.050 25.926 9.18 0.00 34.95 1.52
734 771 8.498054 TCAAATTGCAGTCAAATTTTGGTTAA 57.502 26.923 9.18 0.05 34.95 2.01
735 772 8.674263 ATCAAATTGCAGTCAAATTTTGGTTA 57.326 26.923 9.18 0.00 34.95 2.85
736 773 6.998968 TCAAATTGCAGTCAAATTTTGGTT 57.001 29.167 9.18 0.00 34.95 3.67
737 774 7.571080 AATCAAATTGCAGTCAAATTTTGGT 57.429 28.000 9.18 0.00 34.95 3.67
738 775 9.947669 TTAAATCAAATTGCAGTCAAATTTTGG 57.052 25.926 9.18 0.00 34.95 3.28
746 783 8.772705 GGTCAAATTTAAATCAAATTGCAGTCA 58.227 29.630 0.10 0.00 44.37 3.41
747 784 8.772705 TGGTCAAATTTAAATCAAATTGCAGTC 58.227 29.630 0.10 0.00 44.37 3.51
748 785 8.674263 TGGTCAAATTTAAATCAAATTGCAGT 57.326 26.923 0.10 0.00 44.37 4.40
749 786 9.947669 TTTGGTCAAATTTAAATCAAATTGCAG 57.052 25.926 0.10 0.00 44.37 4.41
766 803 8.835439 GCTCAAATTTAGGAAATTTTGGTCAAA 58.165 29.630 7.09 0.00 46.01 2.69
767 804 7.989741 TGCTCAAATTTAGGAAATTTTGGTCAA 59.010 29.630 7.09 0.00 46.01 3.18
768 805 7.504403 TGCTCAAATTTAGGAAATTTTGGTCA 58.496 30.769 7.09 2.45 46.01 4.02
769 806 7.961325 TGCTCAAATTTAGGAAATTTTGGTC 57.039 32.000 7.09 0.44 46.01 4.02
770 807 8.922931 ATTGCTCAAATTTAGGAAATTTTGGT 57.077 26.923 7.09 0.00 46.01 3.67
775 812 8.724229 GCAGAAATTGCTCAAATTTAGGAAATT 58.276 29.630 0.00 0.00 46.29 1.82
776 813 8.260270 GCAGAAATTGCTCAAATTTAGGAAAT 57.740 30.769 0.00 0.00 46.29 2.17
777 814 7.656707 GCAGAAATTGCTCAAATTTAGGAAA 57.343 32.000 0.00 0.00 46.29 3.13
792 829 8.958043 GCGAAAAGTATATTTAGGCAGAAATTG 58.042 33.333 3.17 0.00 31.51 2.32
793 830 8.135529 GGCGAAAAGTATATTTAGGCAGAAATT 58.864 33.333 3.17 0.00 39.27 1.82
794 831 7.502561 AGGCGAAAAGTATATTTAGGCAGAAAT 59.497 33.333 8.59 3.35 41.00 2.17
795 832 6.826741 AGGCGAAAAGTATATTTAGGCAGAAA 59.173 34.615 8.59 0.00 41.00 2.52
796 833 6.354130 AGGCGAAAAGTATATTTAGGCAGAA 58.646 36.000 8.59 0.00 41.00 3.02
797 834 5.925509 AGGCGAAAAGTATATTTAGGCAGA 58.074 37.500 8.59 0.00 41.00 4.26
798 835 5.758296 TGAGGCGAAAAGTATATTTAGGCAG 59.242 40.000 8.59 0.00 41.00 4.85
799 836 5.676552 TGAGGCGAAAAGTATATTTAGGCA 58.323 37.500 8.59 0.00 41.00 4.75
800 837 5.179555 CCTGAGGCGAAAAGTATATTTAGGC 59.820 44.000 0.00 0.00 39.59 3.93
801 838 5.179555 GCCTGAGGCGAAAAGTATATTTAGG 59.820 44.000 8.16 0.00 39.62 2.69
802 839 6.229561 GCCTGAGGCGAAAAGTATATTTAG 57.770 41.667 8.16 0.00 39.62 1.85
825 862 1.934463 CGAATTTCGGCCATCTCGG 59.066 57.895 10.95 0.00 36.00 4.63
835 872 0.730265 TGGATTTCGGCCGAATTTCG 59.270 50.000 38.89 11.81 40.07 3.46
836 873 1.743394 AGTGGATTTCGGCCGAATTTC 59.257 47.619 38.89 33.33 33.79 2.17
837 874 1.834188 AGTGGATTTCGGCCGAATTT 58.166 45.000 38.89 28.86 33.79 1.82
838 875 1.834188 AAGTGGATTTCGGCCGAATT 58.166 45.000 38.89 34.04 33.79 2.17
839 876 1.834188 AAAGTGGATTTCGGCCGAAT 58.166 45.000 38.89 27.72 33.79 3.34
840 877 1.611519 AAAAGTGGATTTCGGCCGAA 58.388 45.000 35.81 35.81 0.00 4.30
841 878 1.268352 CAAAAAGTGGATTTCGGCCGA 59.732 47.619 27.28 27.28 0.00 5.54
842 879 1.696988 CAAAAAGTGGATTTCGGCCG 58.303 50.000 22.12 22.12 0.00 6.13
843 880 1.428448 GCAAAAAGTGGATTTCGGCC 58.572 50.000 0.00 0.00 0.00 6.13
844 881 1.059942 CGCAAAAAGTGGATTTCGGC 58.940 50.000 0.00 0.00 0.00 5.54
845 882 2.315901 GACGCAAAAAGTGGATTTCGG 58.684 47.619 0.00 0.00 0.00 4.30
846 883 2.315901 GGACGCAAAAAGTGGATTTCG 58.684 47.619 0.00 0.00 0.00 3.46
847 884 2.031508 TCGGACGCAAAAAGTGGATTTC 60.032 45.455 0.00 0.00 0.00 2.17
848 885 1.950909 TCGGACGCAAAAAGTGGATTT 59.049 42.857 0.00 0.00 0.00 2.17
849 886 1.600023 TCGGACGCAAAAAGTGGATT 58.400 45.000 0.00 0.00 0.00 3.01
850 887 1.600023 TTCGGACGCAAAAAGTGGAT 58.400 45.000 0.00 0.00 0.00 3.41
851 888 1.380524 TTTCGGACGCAAAAAGTGGA 58.619 45.000 0.00 0.00 0.00 4.02
852 889 2.196295 TTTTCGGACGCAAAAAGTGG 57.804 45.000 0.00 0.00 0.00 4.00
853 890 3.367607 TGATTTTCGGACGCAAAAAGTG 58.632 40.909 0.00 0.00 0.00 3.16
854 891 3.701532 TGATTTTCGGACGCAAAAAGT 57.298 38.095 0.00 0.00 0.00 2.66
855 892 5.187480 GTTTTGATTTTCGGACGCAAAAAG 58.813 37.500 0.00 0.00 39.32 2.27
856 893 4.625742 TGTTTTGATTTTCGGACGCAAAAA 59.374 33.333 0.00 2.48 39.32 1.94
857 894 4.031878 GTGTTTTGATTTTCGGACGCAAAA 59.968 37.500 0.00 0.00 36.45 2.44
858 895 3.548268 GTGTTTTGATTTTCGGACGCAAA 59.452 39.130 0.00 0.00 0.00 3.68
859 896 3.109619 GTGTTTTGATTTTCGGACGCAA 58.890 40.909 0.00 0.00 0.00 4.85
860 897 2.097629 TGTGTTTTGATTTTCGGACGCA 59.902 40.909 0.00 0.00 0.00 5.24
861 898 2.719046 CTGTGTTTTGATTTTCGGACGC 59.281 45.455 0.00 0.00 0.00 5.19
862 899 3.947626 ACTGTGTTTTGATTTTCGGACG 58.052 40.909 0.00 0.00 0.00 4.79
863 900 4.970003 CAGACTGTGTTTTGATTTTCGGAC 59.030 41.667 0.00 0.00 0.00 4.79
864 901 4.036262 CCAGACTGTGTTTTGATTTTCGGA 59.964 41.667 0.93 0.00 0.00 4.55
865 902 4.290155 CCAGACTGTGTTTTGATTTTCGG 58.710 43.478 0.93 0.00 0.00 4.30
866 903 4.036262 TCCCAGACTGTGTTTTGATTTTCG 59.964 41.667 0.93 0.00 0.00 3.46
867 904 5.281727 GTCCCAGACTGTGTTTTGATTTTC 58.718 41.667 0.93 0.00 0.00 2.29
868 905 4.202010 CGTCCCAGACTGTGTTTTGATTTT 60.202 41.667 0.93 0.00 0.00 1.82
869 906 3.315191 CGTCCCAGACTGTGTTTTGATTT 59.685 43.478 0.93 0.00 0.00 2.17
870 907 2.878406 CGTCCCAGACTGTGTTTTGATT 59.122 45.455 0.93 0.00 0.00 2.57
871 908 2.158813 ACGTCCCAGACTGTGTTTTGAT 60.159 45.455 0.93 0.00 0.00 2.57
872 909 1.208535 ACGTCCCAGACTGTGTTTTGA 59.791 47.619 0.93 0.00 0.00 2.69
873 910 1.330521 CACGTCCCAGACTGTGTTTTG 59.669 52.381 0.93 0.00 34.79 2.44
874 911 1.208535 TCACGTCCCAGACTGTGTTTT 59.791 47.619 14.62 0.00 37.84 2.43
875 912 0.828022 TCACGTCCCAGACTGTGTTT 59.172 50.000 14.62 0.00 37.84 2.83
876 913 0.104304 GTCACGTCCCAGACTGTGTT 59.896 55.000 14.62 0.00 37.84 3.32
877 914 0.755698 AGTCACGTCCCAGACTGTGT 60.756 55.000 5.55 0.00 43.09 3.72
878 915 2.041976 AGTCACGTCCCAGACTGTG 58.958 57.895 5.55 11.09 43.09 3.66
879 916 4.601042 AGTCACGTCCCAGACTGT 57.399 55.556 5.55 0.00 43.09 3.55
881 918 1.153061 TCCAGTCACGTCCCAGACT 59.847 57.895 0.68 0.68 45.46 3.24
882 919 1.289380 GTCCAGTCACGTCCCAGAC 59.711 63.158 0.00 0.00 35.02 3.51
883 920 1.906824 GGTCCAGTCACGTCCCAGA 60.907 63.158 0.00 0.00 0.00 3.86
884 921 2.657237 GGTCCAGTCACGTCCCAG 59.343 66.667 0.00 0.00 0.00 4.45
885 922 3.299977 CGGTCCAGTCACGTCCCA 61.300 66.667 0.00 0.00 0.00 4.37
886 923 3.300765 ACGGTCCAGTCACGTCCC 61.301 66.667 0.00 0.00 35.77 4.46
892 929 0.032952 CCGAAAAGACGGTCCAGTCA 59.967 55.000 4.14 0.00 46.70 3.41
928 965 0.832135 AGAACGGCCTTCTCAGGTGA 60.832 55.000 0.00 0.00 43.18 4.02
929 966 1.674057 AGAACGGCCTTCTCAGGTG 59.326 57.895 0.00 0.00 43.18 4.00
930 967 4.217112 AGAACGGCCTTCTCAGGT 57.783 55.556 0.00 0.00 43.18 4.00
964 1001 3.942115 GGGGAGTGAAAACTAAGAGCATC 59.058 47.826 0.00 0.00 0.00 3.91
970 1007 5.325239 AGAATTGGGGGAGTGAAAACTAAG 58.675 41.667 0.00 0.00 0.00 2.18
971 1008 5.321927 GAGAATTGGGGGAGTGAAAACTAA 58.678 41.667 0.00 0.00 0.00 2.24
972 1009 4.263771 GGAGAATTGGGGGAGTGAAAACTA 60.264 45.833 0.00 0.00 0.00 2.24
974 1011 2.826128 GGAGAATTGGGGGAGTGAAAAC 59.174 50.000 0.00 0.00 0.00 2.43
975 1012 2.554344 CGGAGAATTGGGGGAGTGAAAA 60.554 50.000 0.00 0.00 0.00 2.29
976 1013 1.004277 CGGAGAATTGGGGGAGTGAAA 59.996 52.381 0.00 0.00 0.00 2.69
977 1014 0.618458 CGGAGAATTGGGGGAGTGAA 59.382 55.000 0.00 0.00 0.00 3.18
978 1015 0.252513 TCGGAGAATTGGGGGAGTGA 60.253 55.000 0.00 0.00 0.00 3.41
979 1016 0.179000 CTCGGAGAATTGGGGGAGTG 59.821 60.000 0.00 0.00 34.09 3.51
981 1018 0.691078 TCCTCGGAGAATTGGGGGAG 60.691 60.000 6.58 0.00 34.09 4.30
982 1019 0.030092 ATCCTCGGAGAATTGGGGGA 60.030 55.000 6.58 0.00 34.09 4.81
984 1021 0.109342 CCATCCTCGGAGAATTGGGG 59.891 60.000 6.58 0.00 34.09 4.96
985 1022 0.536006 GCCATCCTCGGAGAATTGGG 60.536 60.000 6.58 2.05 34.09 4.12
986 1023 0.181114 TGCCATCCTCGGAGAATTGG 59.819 55.000 6.58 10.89 34.09 3.16
987 1024 2.042686 TTGCCATCCTCGGAGAATTG 57.957 50.000 6.58 1.02 34.09 2.32
988 1025 2.369394 GTTTGCCATCCTCGGAGAATT 58.631 47.619 6.58 0.00 34.09 2.17
990 1027 0.035439 GGTTTGCCATCCTCGGAGAA 60.035 55.000 6.58 0.00 31.97 2.87
991 1028 1.602237 GGTTTGCCATCCTCGGAGA 59.398 57.895 6.58 0.00 34.09 3.71
992 1029 1.815421 CGGTTTGCCATCCTCGGAG 60.815 63.158 0.00 0.00 34.09 4.63
993 1030 1.832719 TTCGGTTTGCCATCCTCGGA 61.833 55.000 0.00 0.00 34.09 4.55
994 1031 0.958382 TTTCGGTTTGCCATCCTCGG 60.958 55.000 0.00 0.00 34.09 4.63
995 1032 0.168128 GTTTCGGTTTGCCATCCTCG 59.832 55.000 0.00 0.00 34.09 4.63
996 1033 0.526211 GGTTTCGGTTTGCCATCCTC 59.474 55.000 0.00 0.00 34.09 3.71
997 1034 0.898326 GGGTTTCGGTTTGCCATCCT 60.898 55.000 0.00 0.00 34.09 3.24
998 1035 0.898326 AGGGTTTCGGTTTGCCATCC 60.898 55.000 0.00 0.00 34.09 3.51
999 1036 0.526211 GAGGGTTTCGGTTTGCCATC 59.474 55.000 0.00 0.00 34.09 3.51
1000 1037 1.241315 CGAGGGTTTCGGTTTGCCAT 61.241 55.000 0.00 0.00 45.54 4.40
1001 1038 1.894756 CGAGGGTTTCGGTTTGCCA 60.895 57.895 0.00 0.00 45.54 4.92
1002 1039 2.951458 CGAGGGTTTCGGTTTGCC 59.049 61.111 0.00 0.00 45.54 4.52
1044 1081 3.477578 GATTAGCAGCCCCGGTCCC 62.478 68.421 0.00 0.00 0.00 4.46
1045 1082 2.111251 GATTAGCAGCCCCGGTCC 59.889 66.667 0.00 0.00 0.00 4.46
1046 1083 2.280186 CGATTAGCAGCCCCGGTC 60.280 66.667 0.00 0.00 0.00 4.79
1052 1089 1.780025 GCTGAAGCCGATTAGCAGCC 61.780 60.000 0.00 0.00 44.50 4.85
1057 1094 2.141517 CTCCATGCTGAAGCCGATTAG 58.858 52.381 0.00 0.00 41.18 1.73
1059 1096 1.099879 GCTCCATGCTGAAGCCGATT 61.100 55.000 0.00 0.00 41.18 3.34
1066 1103 2.437180 CGCCTGCTCCATGCTGAA 60.437 61.111 0.00 0.00 42.27 3.02
1107 1144 4.400961 AGCGTTCCAGGCTCCAGC 62.401 66.667 0.00 0.00 33.55 4.85
1112 1149 4.400961 GCCAGAGCGTTCCAGGCT 62.401 66.667 21.06 0.00 42.66 4.58
1113 1150 4.400961 AGCCAGAGCGTTCCAGGC 62.401 66.667 20.87 20.87 46.67 4.85
1116 1153 2.659016 CTGAGCCAGAGCGTTCCA 59.341 61.111 0.00 0.00 46.67 3.53
1119 1156 1.744368 CATGCTGAGCCAGAGCGTT 60.744 57.895 0.23 0.00 46.67 4.84
1125 1162 0.468648 TGATCTCCATGCTGAGCCAG 59.531 55.000 0.23 0.00 32.22 4.85
1126 1163 1.137697 ATGATCTCCATGCTGAGCCA 58.862 50.000 0.23 0.00 33.39 4.75
1140 1177 1.865865 ATACGACCGTTGCCATGATC 58.134 50.000 0.00 0.00 0.00 2.92
1143 1180 2.475111 GTCATATACGACCGTTGCCATG 59.525 50.000 0.00 0.64 0.00 3.66
1158 1195 1.536662 GGGGAGGAGGGCGTCATAT 60.537 63.158 9.66 0.00 0.00 1.78
1159 1196 2.122989 GGGGAGGAGGGCGTCATA 60.123 66.667 9.66 0.00 0.00 2.15
1215 1258 3.384348 GGAACCCAGGTCGTGCTA 58.616 61.111 0.00 0.00 0.00 3.49
1360 1403 3.733960 TCGAGGACGAGGTGCACG 61.734 66.667 11.45 1.58 43.81 5.34
1379 1422 1.460689 TCGGGAGGAAGTGGGTGTT 60.461 57.895 0.00 0.00 0.00 3.32
1438 4797 4.295119 ACGCCTGTGACCACGTCC 62.295 66.667 0.00 0.00 32.37 4.79
1486 4845 1.532604 CGCTACAGGTGAGGTGGACA 61.533 60.000 0.00 0.00 0.00 4.02
1526 4885 2.502492 CGAGCCACCGGGAGATCAT 61.502 63.158 6.32 0.00 35.59 2.45
1527 4886 3.147595 CGAGCCACCGGGAGATCA 61.148 66.667 6.32 0.00 35.59 2.92
1565 4924 2.435805 TGATAAAGGCGAGCTCTTGGAT 59.564 45.455 12.85 0.00 0.00 3.41
1664 5023 1.537889 TTTCCGGGAGCCTCCAGAA 60.538 57.895 13.90 11.94 38.64 3.02
1731 5108 3.052620 ATGACGACGACGCAGAGGG 62.053 63.158 7.30 0.00 43.96 4.30
1739 5116 1.139095 GGTCCTCCATGACGACGAC 59.861 63.158 0.00 0.00 36.07 4.34
1760 5137 1.302832 CGAGCAGGAAGGCAAGGTT 60.303 57.895 0.00 0.00 35.83 3.50
1765 5142 4.069232 CGGTCGAGCAGGAAGGCA 62.069 66.667 15.89 0.00 35.83 4.75
1881 5258 1.476471 CCATGACCTCCTCCAAGATGC 60.476 57.143 0.00 0.00 0.00 3.91
1926 5303 1.131638 TGTTGTCCACTCCAAGAGCT 58.868 50.000 0.00 0.00 32.04 4.09
1934 5311 2.026822 ACTCATCCCATGTTGTCCACTC 60.027 50.000 0.00 0.00 0.00 3.51
1945 5322 2.376518 ACACTTGGTTGACTCATCCCAT 59.623 45.455 4.02 0.00 0.00 4.00
1946 5323 1.774254 ACACTTGGTTGACTCATCCCA 59.226 47.619 4.02 0.00 0.00 4.37
1947 5324 2.568623 ACACTTGGTTGACTCATCCC 57.431 50.000 4.02 0.00 0.00 3.85
1948 5325 2.814336 GGAACACTTGGTTGACTCATCC 59.186 50.000 0.00 0.00 40.63 3.51
1950 5327 3.480470 CTGGAACACTTGGTTGACTCAT 58.520 45.455 0.00 0.00 40.63 2.90
1952 5329 2.158813 TCCTGGAACACTTGGTTGACTC 60.159 50.000 0.00 0.00 40.63 3.36
1953 5330 1.843851 TCCTGGAACACTTGGTTGACT 59.156 47.619 0.00 0.00 40.63 3.41
1955 5332 2.441375 TGATCCTGGAACACTTGGTTGA 59.559 45.455 0.00 0.00 40.63 3.18
1956 5333 2.862541 TGATCCTGGAACACTTGGTTG 58.137 47.619 0.00 0.00 40.63 3.77
1959 5336 3.423539 TCTTGATCCTGGAACACTTGG 57.576 47.619 6.11 0.00 0.00 3.61
2015 5405 2.040278 AGTTATGCTGTCCTGGCTGAAA 59.960 45.455 0.00 0.00 0.00 2.69
2027 5417 5.355071 TGTTGCTAATCTCCAAGTTATGCTG 59.645 40.000 0.00 0.00 0.00 4.41
2033 5423 3.074412 CGGTGTTGCTAATCTCCAAGTT 58.926 45.455 0.00 0.00 0.00 2.66
2066 5456 2.796557 ACTAGAGTCTAGTGTGCTGCA 58.203 47.619 28.24 0.00 0.00 4.41
2067 5457 3.191581 TGAACTAGAGTCTAGTGTGCTGC 59.808 47.826 29.21 16.14 0.00 5.25
2068 5458 4.216472 TGTGAACTAGAGTCTAGTGTGCTG 59.784 45.833 29.21 6.23 0.00 4.41
2069 5459 4.399219 TGTGAACTAGAGTCTAGTGTGCT 58.601 43.478 29.21 16.19 0.00 4.40
2070 5460 4.768130 TGTGAACTAGAGTCTAGTGTGC 57.232 45.455 29.21 21.56 0.00 4.57
2071 5461 6.260870 ACATGTGAACTAGAGTCTAGTGTG 57.739 41.667 29.21 22.71 0.00 3.82
2072 5462 7.415765 GCATACATGTGAACTAGAGTCTAGTGT 60.416 40.741 29.21 22.78 0.00 3.55
2073 5463 6.915300 GCATACATGTGAACTAGAGTCTAGTG 59.085 42.308 29.21 18.99 0.00 2.74
2074 5464 6.603599 TGCATACATGTGAACTAGAGTCTAGT 59.396 38.462 24.42 24.42 0.00 2.57
2075 5465 7.032377 TGCATACATGTGAACTAGAGTCTAG 57.968 40.000 23.12 23.12 0.00 2.43
2076 5466 7.588497 ATGCATACATGTGAACTAGAGTCTA 57.412 36.000 9.11 0.00 34.35 2.59
2077 5467 5.921962 TGCATACATGTGAACTAGAGTCT 57.078 39.130 9.11 0.00 0.00 3.24
2078 5468 7.065085 ACAAATGCATACATGTGAACTAGAGTC 59.935 37.037 9.11 0.00 43.28 3.36
2079 5469 6.881065 ACAAATGCATACATGTGAACTAGAGT 59.119 34.615 9.11 0.00 43.28 3.24
2080 5470 7.064966 TGACAAATGCATACATGTGAACTAGAG 59.935 37.037 9.11 0.00 43.28 2.43
2081 5471 6.878389 TGACAAATGCATACATGTGAACTAGA 59.122 34.615 9.11 0.00 43.28 2.43
2082 5472 7.075674 TGACAAATGCATACATGTGAACTAG 57.924 36.000 9.11 0.00 43.28 2.57
2083 5473 7.446001 TTGACAAATGCATACATGTGAACTA 57.554 32.000 9.11 0.00 43.28 2.24
2084 5474 5.963176 TGACAAATGCATACATGTGAACT 57.037 34.783 9.11 0.00 43.28 3.01
2085 5475 8.686397 TTATTGACAAATGCATACATGTGAAC 57.314 30.769 9.11 0.00 43.28 3.18
2109 5499 9.299465 TGATGACATTGGCATATGTATGTTATT 57.701 29.630 4.61 9.67 38.80 1.40
2110 5500 8.866970 TGATGACATTGGCATATGTATGTTAT 57.133 30.769 4.61 16.96 38.80 1.89
2111 5501 8.688747 TTGATGACATTGGCATATGTATGTTA 57.311 30.769 4.61 13.85 38.80 2.41
2112 5502 7.255695 CCTTGATGACATTGGCATATGTATGTT 60.256 37.037 4.61 6.65 38.80 2.71
2113 5503 6.208007 CCTTGATGACATTGGCATATGTATGT 59.792 38.462 4.61 15.47 38.80 2.29
2114 5504 6.349860 CCCTTGATGACATTGGCATATGTATG 60.350 42.308 4.61 8.47 38.80 2.39
2115 5505 5.713389 CCCTTGATGACATTGGCATATGTAT 59.287 40.000 4.61 8.66 38.80 2.29
2116 5506 5.072055 CCCTTGATGACATTGGCATATGTA 58.928 41.667 4.61 0.00 38.80 2.29
2117 5507 3.893200 CCCTTGATGACATTGGCATATGT 59.107 43.478 4.61 12.87 41.30 2.29
2118 5508 3.305813 GCCCTTGATGACATTGGCATATG 60.306 47.826 4.61 0.00 40.46 1.78
2119 5509 2.895404 GCCCTTGATGACATTGGCATAT 59.105 45.455 4.61 0.00 40.46 1.78
2120 5510 2.091720 AGCCCTTGATGACATTGGCATA 60.092 45.455 4.61 0.00 42.02 3.14
2121 5511 1.117150 GCCCTTGATGACATTGGCAT 58.883 50.000 4.19 4.19 40.46 4.40
2122 5512 0.040058 AGCCCTTGATGACATTGGCA 59.960 50.000 16.60 0.00 42.02 4.92
2123 5513 0.743097 GAGCCCTTGATGACATTGGC 59.257 55.000 9.83 9.83 40.80 4.52
2124 5514 2.133281 TGAGCCCTTGATGACATTGG 57.867 50.000 0.00 0.00 0.00 3.16
2125 5515 4.730949 ATTTGAGCCCTTGATGACATTG 57.269 40.909 0.00 0.00 0.00 2.82
2126 5516 7.427989 AATAATTTGAGCCCTTGATGACATT 57.572 32.000 0.00 0.00 0.00 2.71
2127 5517 7.124599 TGAAATAATTTGAGCCCTTGATGACAT 59.875 33.333 0.00 0.00 0.00 3.06
2128 5518 6.436847 TGAAATAATTTGAGCCCTTGATGACA 59.563 34.615 0.00 0.00 0.00 3.58
2129 5519 6.866480 TGAAATAATTTGAGCCCTTGATGAC 58.134 36.000 0.00 0.00 0.00 3.06
2130 5520 7.664552 ATGAAATAATTTGAGCCCTTGATGA 57.335 32.000 0.00 0.00 0.00 2.92
2254 5650 3.127533 GTCGGCCCAGCACATGTC 61.128 66.667 0.00 0.00 0.00 3.06
2291 5687 6.769134 AGTTTTAGGGTTGCGCTTATATTT 57.231 33.333 9.73 0.00 0.00 1.40
2329 5726 7.623630 CCTTGGGTTCAAATCCTCATAATTTT 58.376 34.615 0.00 0.00 31.77 1.82
2331 5728 5.129320 GCCTTGGGTTCAAATCCTCATAATT 59.871 40.000 0.00 0.00 31.77 1.40
2354 5751 0.881796 GTTGGTTGAAGTGGCTAGGC 59.118 55.000 9.85 9.85 0.00 3.93
2407 5827 7.900782 ATATGTACGCTAGTGTGTTTTCTTT 57.099 32.000 19.20 0.00 38.05 2.52
2789 6446 8.855279 TGTAAAAACGTTCACAGATTTGAAAAG 58.145 29.630 0.00 0.00 37.24 2.27
2795 6452 6.915843 GGATGTGTAAAAACGTTCACAGATTT 59.084 34.615 20.67 11.27 42.61 2.17
3516 7196 3.181466 GGAAGTTGTTCAAACCTGGCATT 60.181 43.478 0.00 0.00 33.93 3.56
3734 7414 1.061546 GGGTGTTCAGGTAGGGTGAA 58.938 55.000 0.00 0.00 0.00 3.18
4013 8453 5.610398 TCTCTTTATCGCATCAGCCAAATA 58.390 37.500 0.00 0.00 37.52 1.40
4918 12956 1.840650 ATAGCAGATCCGCCAGCCT 60.841 57.895 0.00 0.00 0.00 4.58
5051 13093 5.048782 TGCAATGCGGCTAATTAAGATAAGG 60.049 40.000 0.00 0.00 34.04 2.69
5052 13094 6.000891 TGCAATGCGGCTAATTAAGATAAG 57.999 37.500 0.00 0.00 34.04 1.73
5053 13095 6.573664 ATGCAATGCGGCTAATTAAGATAA 57.426 33.333 0.00 0.00 34.04 1.75
5054 13096 6.573664 AATGCAATGCGGCTAATTAAGATA 57.426 33.333 0.00 0.00 34.04 1.98
5055 13097 5.458041 AATGCAATGCGGCTAATTAAGAT 57.542 34.783 0.00 0.00 34.04 2.40
5056 13098 4.916983 AATGCAATGCGGCTAATTAAGA 57.083 36.364 0.00 0.00 34.04 2.10
5057 13099 4.318263 GCAAATGCAATGCGGCTAATTAAG 60.318 41.667 11.48 0.00 41.59 1.85
5058 13100 3.555139 GCAAATGCAATGCGGCTAATTAA 59.445 39.130 11.48 0.00 41.59 1.40
5059 13101 3.122297 GCAAATGCAATGCGGCTAATTA 58.878 40.909 11.48 0.00 41.59 1.40
5060 13102 1.935199 GCAAATGCAATGCGGCTAATT 59.065 42.857 11.48 0.00 41.59 1.40
5344 14748 6.963049 AAATAAGTGTCGCTGGTTTAGTAG 57.037 37.500 0.00 0.00 0.00 2.57
5396 14800 0.704076 CACCTCCCTCCATCCCAAAA 59.296 55.000 0.00 0.00 0.00 2.44
5683 15087 0.541764 GGCTTTCACATCAACCCCCA 60.542 55.000 0.00 0.00 0.00 4.96
5696 15100 1.322442 AAGGCTTGAGTGTGGCTTTC 58.678 50.000 0.00 0.00 44.83 2.62
5712 15116 1.794116 CCATTTTGCGCAAGACAAAGG 59.206 47.619 23.68 16.78 41.67 3.11
5715 15119 0.599728 GCCCATTTTGCGCAAGACAA 60.600 50.000 23.68 15.44 43.02 3.18
5718 15122 1.752358 TTGGCCCATTTTGCGCAAGA 61.752 50.000 23.68 20.02 43.02 3.02
5805 15209 2.867368 ACGTAGACTCAGATGCTAGTCG 59.133 50.000 0.00 0.00 45.47 4.18
5856 15260 8.986477 ACAAATTAACCTTACAGCAATTCATC 57.014 30.769 0.00 0.00 0.00 2.92
6127 15531 2.019249 CATGCAGACCACCACCATTAG 58.981 52.381 0.00 0.00 0.00 1.73
6146 15550 6.546772 CACCTAAAACCCTTGTAAAGTTACCA 59.453 38.462 0.00 0.00 44.25 3.25
6260 15664 3.993081 CAGCGATCAGGCTTAAATAGGAG 59.007 47.826 0.00 0.00 42.53 3.69
6279 15683 3.878778 ACCTGGTATGTTCATCTTCAGC 58.121 45.455 0.00 0.00 0.00 4.26
6309 15713 4.032900 GCTTTCGTCTCGAATAATTCAGCA 59.967 41.667 14.61 0.00 45.28 4.41
6433 15857 6.513806 ACATTACACAAGCATAGCATTGAA 57.486 33.333 7.73 0.00 0.00 2.69
6593 16017 7.010460 GGCCTGAACAGATTATAAAATGCAAAC 59.990 37.037 0.00 0.00 0.00 2.93
6640 16064 3.310501 GCAAACTGCAAGCACTTGAAATT 59.689 39.130 14.44 0.00 44.26 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.