Multiple sequence alignment - TraesCS2A01G059500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G059500 chr2A 100.000 2789 0 0 1 2789 25451775 25448987 0.000000e+00 5151.0
1 TraesCS2A01G059500 chr2A 96.561 378 13 0 2 379 25465157 25464780 6.560000e-176 627.0
2 TraesCS2A01G059500 chr2A 75.620 726 115 39 1060 1775 158073765 158073092 1.260000e-78 303.0
3 TraesCS2A01G059500 chr2A 80.075 266 27 12 443 703 25456704 25456460 1.030000e-39 174.0
4 TraesCS2A01G059500 chr2A 79.699 266 28 12 443 703 25469725 25469481 4.780000e-38 169.0
5 TraesCS2A01G059500 chr2D 88.816 2593 175 44 1 2547 23316488 23319011 0.000000e+00 3075.0
6 TraesCS2A01G059500 chr2D 75.580 733 116 40 1060 1781 143221544 143222224 1.260000e-78 303.0
7 TraesCS2A01G059500 chr2B 87.024 1865 146 45 745 2551 36922186 36920360 0.000000e+00 2015.0
8 TraesCS2A01G059500 chr2B 86.971 1865 147 45 745 2551 36928082 36926256 0.000000e+00 2010.0
9 TraesCS2A01G059500 chr2B 86.971 1865 147 45 745 2551 36939488 36937662 0.000000e+00 2010.0
10 TraesCS2A01G059500 chr2B 87.612 1671 115 42 745 2359 36916357 36914723 0.000000e+00 1855.0
11 TraesCS2A01G059500 chr2B 85.810 1635 138 44 975 2551 36945168 36943570 0.000000e+00 1648.0
12 TraesCS2A01G059500 chr2B 93.103 406 25 3 1246 1648 36917901 36917496 2.390000e-165 592.0
13 TraesCS2A01G059500 chrUn 95.197 229 9 1 745 973 474854523 474854297 7.340000e-96 361.0
14 TraesCS2A01G059500 chr7D 85.000 140 13 7 1678 1813 585603461 585603326 4.850000e-28 135.0
15 TraesCS2A01G059500 chr7A 82.036 167 21 8 1678 1839 676065820 676065658 1.740000e-27 134.0
16 TraesCS2A01G059500 chr7B 83.571 140 14 8 1678 1813 654995340 654995206 3.770000e-24 122.0
17 TraesCS2A01G059500 chr1D 96.875 32 1 0 552 583 172190529 172190560 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G059500 chr2A 25448987 25451775 2788 True 5151.000000 5151 100.000000 1 2789 1 chr2A.!!$R1 2788
1 TraesCS2A01G059500 chr2A 158073092 158073765 673 True 303.000000 303 75.620000 1060 1775 1 chr2A.!!$R5 715
2 TraesCS2A01G059500 chr2D 23316488 23319011 2523 False 3075.000000 3075 88.816000 1 2547 1 chr2D.!!$F1 2546
3 TraesCS2A01G059500 chr2D 143221544 143222224 680 False 303.000000 303 75.580000 1060 1781 1 chr2D.!!$F2 721
4 TraesCS2A01G059500 chr2B 36926256 36928082 1826 True 2010.000000 2010 86.971000 745 2551 1 chr2B.!!$R1 1806
5 TraesCS2A01G059500 chr2B 36937662 36939488 1826 True 2010.000000 2010 86.971000 745 2551 1 chr2B.!!$R2 1806
6 TraesCS2A01G059500 chr2B 36943570 36945168 1598 True 1648.000000 1648 85.810000 975 2551 1 chr2B.!!$R3 1576
7 TraesCS2A01G059500 chr2B 36914723 36922186 7463 True 1487.333333 2015 89.246333 745 2551 3 chr2B.!!$R4 1806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 890 0.391927 TCCCGCCTAACAAACCATCG 60.392 55.0 0.0 0.0 0.0 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 2334 0.106708 ATGACCACACAAGCACGACT 59.893 50.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.930865 AGCAAATTAAACATTAAGGCAAAGACA 59.069 29.630 0.00 0.00 0.00 3.41
90 92 6.286240 ACTCAAGCCAAGAAGAAAAACTTT 57.714 33.333 0.00 0.00 39.13 2.66
96 98 9.912634 CAAGCCAAGAAGAAAAACTTTCATATA 57.087 29.630 2.25 0.00 39.13 0.86
150 152 3.886505 CTCTAGTCCTAGCCCAACTAGTG 59.113 52.174 0.00 10.74 46.10 2.74
189 191 9.905713 AAGATTACCTAGTTTGAATGATAAGCA 57.094 29.630 0.00 0.00 0.00 3.91
210 212 6.815089 AGCAGACATAATTTCAGTCTAGAGG 58.185 40.000 0.00 0.00 40.42 3.69
247 273 2.227865 TGCGTCATCTTAGGTTTTTGCC 59.772 45.455 0.00 0.00 0.00 4.52
277 303 4.481368 TGGACCATTTGACGTAGCTATT 57.519 40.909 0.00 0.00 0.00 1.73
290 316 4.122776 CGTAGCTATTCCTGCATTTCAGT 58.877 43.478 0.00 0.00 41.25 3.41
302 328 3.578282 TGCATTTCAGTCTCTGACAGGTA 59.422 43.478 1.81 0.00 40.46 3.08
307 333 1.618345 CAGTCTCTGACAGGTAGGCCT 60.618 57.143 11.78 11.78 38.66 5.19
311 337 1.411977 CTCTGACAGGTAGGCCTCATG 59.588 57.143 9.68 12.04 44.97 3.07
341 367 1.345741 ACCCACATGTCAGTGACTCAG 59.654 52.381 23.29 14.90 42.05 3.35
352 378 1.189752 GTGACTCAGAGGCAGGATCA 58.810 55.000 6.08 0.00 30.96 2.92
363 389 0.459237 GCAGGATCACTCACGTCAGG 60.459 60.000 0.00 0.00 0.00 3.86
395 421 2.863704 GCCTTGTGCAACTGTTTCATCC 60.864 50.000 0.00 0.00 40.77 3.51
402 428 5.105392 TGTGCAACTGTTTCATCCTTTTCTT 60.105 36.000 0.00 0.00 38.04 2.52
403 429 6.096141 TGTGCAACTGTTTCATCCTTTTCTTA 59.904 34.615 0.00 0.00 38.04 2.10
404 430 6.638468 GTGCAACTGTTTCATCCTTTTCTTAG 59.362 38.462 0.00 0.00 0.00 2.18
407 433 7.920682 GCAACTGTTTCATCCTTTTCTTAGAAA 59.079 33.333 2.94 2.94 0.00 2.52
408 434 9.971922 CAACTGTTTCATCCTTTTCTTAGAAAT 57.028 29.630 8.31 0.00 0.00 2.17
409 435 9.971922 AACTGTTTCATCCTTTTCTTAGAAATG 57.028 29.630 8.31 10.45 0.00 2.32
410 436 9.136323 ACTGTTTCATCCTTTTCTTAGAAATGT 57.864 29.630 8.31 0.00 0.00 2.71
420 446 7.589954 CCTTTTCTTAGAAATGTGGTACAAACG 59.410 37.037 8.31 0.00 44.16 3.60
427 453 2.248280 TGTGGTACAAACGCAGATGT 57.752 45.000 0.00 0.00 44.16 3.06
457 483 4.662468 TTAACCATTTCAAGTGCTTGCA 57.338 36.364 7.03 0.00 40.24 4.08
489 515 5.621329 GCCGCATATTGTTCAAAGTTACCTT 60.621 40.000 0.00 0.00 0.00 3.50
518 544 6.849588 AATTGGTTCAACTTTTGCATTCTC 57.150 33.333 0.00 0.00 0.00 2.87
525 551 7.752686 GGTTCAACTTTTGCATTCTCTAATCTC 59.247 37.037 0.00 0.00 0.00 2.75
532 558 5.946942 TGCATTCTCTAATCTCTCCAAGT 57.053 39.130 0.00 0.00 0.00 3.16
553 579 5.703876 AGTTTTGCAGTTTTATGCTAGAGC 58.296 37.500 0.00 0.00 46.63 4.09
605 631 9.820229 TTTATTTTTACTGTCGTTAGAATGCTG 57.180 29.630 0.00 0.00 0.00 4.41
606 632 7.667043 ATTTTTACTGTCGTTAGAATGCTGA 57.333 32.000 0.00 0.00 0.00 4.26
612 638 5.134202 TGTCGTTAGAATGCTGAAAGAGA 57.866 39.130 0.00 0.00 34.07 3.10
636 662 1.705186 AGCCCTGAAGAGTTTTGCCTA 59.295 47.619 0.00 0.00 0.00 3.93
649 675 1.026182 TTGCCTATGCTGGTTCTGCG 61.026 55.000 0.00 0.00 38.71 5.18
651 677 1.153289 CCTATGCTGGTTCTGCGCT 60.153 57.895 9.73 0.00 0.00 5.92
711 737 2.036731 ATGGACTGTCCGACCCGA 59.963 61.111 21.15 3.56 40.17 5.14
712 738 1.381327 ATGGACTGTCCGACCCGAT 60.381 57.895 21.15 5.86 40.17 4.18
716 742 0.813184 GACTGTCCGACCCGATGTTA 59.187 55.000 0.00 0.00 0.00 2.41
730 756 3.126858 CCGATGTTACATGGGTTCAACTG 59.873 47.826 16.67 0.00 0.00 3.16
731 757 3.126858 CGATGTTACATGGGTTCAACTGG 59.873 47.826 1.24 0.00 0.00 4.00
772 798 7.513371 AAACTAACATAATCACCGGTTGAAA 57.487 32.000 2.97 0.00 37.92 2.69
777 803 7.513371 AACATAATCACCGGTTGAAAGTTTA 57.487 32.000 2.97 0.00 37.92 2.01
778 804 7.696992 ACATAATCACCGGTTGAAAGTTTAT 57.303 32.000 2.97 1.83 37.92 1.40
779 805 8.795842 ACATAATCACCGGTTGAAAGTTTATA 57.204 30.769 2.97 0.00 37.92 0.98
780 806 9.403583 ACATAATCACCGGTTGAAAGTTTATAT 57.596 29.630 2.97 0.00 37.92 0.86
861 890 0.391927 TCCCGCCTAACAAACCATCG 60.392 55.000 0.00 0.00 0.00 3.84
875 904 2.165167 ACCATCGAAAGGTACGTGAGA 58.835 47.619 10.85 0.00 37.67 3.27
890 919 4.058817 ACGTGAGAAGATCAAGGAAACAC 58.941 43.478 0.00 0.00 41.23 3.32
995 1024 8.982723 ACCCTATATATACATTCACTGATCACC 58.017 37.037 0.00 0.00 0.00 4.02
1007 1036 3.618594 CACTGATCACCAACCATAAGACG 59.381 47.826 0.00 0.00 0.00 4.18
1013 1042 2.410730 CACCAACCATAAGACGTTCGTC 59.589 50.000 16.11 16.11 35.54 4.20
1070 1099 4.530857 GAGACCGACCCATGGCGG 62.531 72.222 24.31 24.31 43.93 6.13
1096 1125 1.522580 GTCCCATCTCGCCTGCTTC 60.523 63.158 0.00 0.00 0.00 3.86
1121 1156 4.778415 CCGTCGCCGTCCTGACTG 62.778 72.222 0.00 0.00 32.93 3.51
1264 1305 8.394877 TGCTTTTCGTTTATACCACAGATATTG 58.605 33.333 0.00 0.00 0.00 1.90
1409 1450 0.804989 GGATTTCCTCACCAACAGCG 59.195 55.000 0.00 0.00 0.00 5.18
1528 1569 1.203523 GACCTCGACAAGCTCATGTCT 59.796 52.381 14.90 0.00 45.98 3.41
1558 1599 5.403766 CGTGGATAGAGAGAAATTCATTCGG 59.596 44.000 0.00 0.00 43.15 4.30
1582 1623 0.029967 TGATCATCTGCGACTCGAGC 59.970 55.000 13.61 4.47 0.00 5.03
1629 1673 4.760878 GGTAACTTGTTGATCTCCTCTCC 58.239 47.826 0.00 0.00 0.00 3.71
1636 1680 0.185416 TGATCTCCTCTCCCGGTACC 59.815 60.000 0.16 0.16 0.00 3.34
1641 1685 2.171840 CTCCTCTCCCGGTACCATATG 58.828 57.143 13.54 0.00 0.00 1.78
1650 1694 5.673514 TCCCGGTACCATATGTAAACTTTC 58.326 41.667 13.54 0.00 0.00 2.62
1651 1695 5.189342 TCCCGGTACCATATGTAAACTTTCA 59.811 40.000 13.54 0.00 0.00 2.69
1665 1714 5.989551 AAACTTTCATTTGCGCATTTCTT 57.010 30.435 12.75 0.00 0.00 2.52
1676 1745 7.795431 TTTGCGCATTTCTTATTGTCTTTAG 57.205 32.000 12.75 0.00 0.00 1.85
1694 1764 8.902806 TGTCTTTAGTGTGAATCTTTTTGATGT 58.097 29.630 0.00 0.00 35.21 3.06
1702 1776 8.725148 GTGTGAATCTTTTTGATGTATCTGAGT 58.275 33.333 0.00 0.00 35.21 3.41
1787 1868 6.449830 AGTCAGGTAACCAGTTTATTTCCT 57.550 37.500 0.00 0.00 37.17 3.36
1791 1872 8.153221 TCAGGTAACCAGTTTATTTCCTGATA 57.847 34.615 7.90 0.00 43.12 2.15
1889 1972 9.631452 GGGTGAGGTATACTTATTTACGTATTC 57.369 37.037 2.25 0.00 0.00 1.75
1932 2019 0.391661 TCTTTGCAGAGCCATCGTCC 60.392 55.000 0.00 0.00 0.00 4.79
1937 2024 1.725557 GCAGAGCCATCGTCCTCGTA 61.726 60.000 0.00 0.00 38.33 3.43
1940 2027 1.712977 GAGCCATCGTCCTCGTACGT 61.713 60.000 16.05 0.00 43.31 3.57
1941 2028 0.462581 AGCCATCGTCCTCGTACGTA 60.463 55.000 16.05 0.00 43.31 3.57
1942 2029 0.378257 GCCATCGTCCTCGTACGTAA 59.622 55.000 16.05 0.00 43.31 3.18
1971 2058 5.184479 AGCATTACAGAAACAAGATGCATGT 59.816 36.000 2.46 0.00 41.60 3.21
1972 2059 5.287752 GCATTACAGAAACAAGATGCATGTG 59.712 40.000 2.46 4.47 39.58 3.21
1973 2060 3.293311 ACAGAAACAAGATGCATGTGC 57.707 42.857 2.46 0.00 42.50 4.57
2016 2103 5.185454 TGTCAAGATCCGTTAGCATCATTT 58.815 37.500 0.00 0.00 0.00 2.32
2076 2165 6.246420 AGAATGTGTAGCTTCATTTGTGAC 57.754 37.500 0.00 0.00 34.92 3.67
2079 2168 5.422666 TGTGTAGCTTCATTTGTGACAAG 57.577 39.130 0.00 0.00 0.00 3.16
2116 2207 7.546667 TCACCGTCCAACTATATGTTTCTTTAC 59.453 37.037 0.00 0.00 36.63 2.01
2117 2208 6.532657 ACCGTCCAACTATATGTTTCTTTACG 59.467 38.462 0.00 0.00 36.63 3.18
2120 2211 8.649841 CGTCCAACTATATGTTTCTTTACGAAA 58.350 33.333 0.00 0.00 39.23 3.46
2147 2239 4.159377 CAACCGTTGCTATGTGTTTGAT 57.841 40.909 0.00 0.00 0.00 2.57
2150 2242 5.950758 ACCGTTGCTATGTGTTTGATTAA 57.049 34.783 0.00 0.00 0.00 1.40
2161 2253 5.849510 TGTGTTTGATTAAGGAGTCTTCGA 58.150 37.500 0.00 0.00 34.59 3.71
2162 2254 6.464222 TGTGTTTGATTAAGGAGTCTTCGAT 58.536 36.000 0.00 0.00 34.59 3.59
2165 2257 9.745880 GTGTTTGATTAAGGAGTCTTCGATATA 57.254 33.333 0.00 0.00 34.59 0.86
2198 2291 7.928167 TGTGCAATTTGGTAATAAACACATCAA 59.072 29.630 0.00 0.00 31.50 2.57
2241 2334 6.923670 AGTCCTTAGTCCTGTAATCCTATGA 58.076 40.000 0.00 0.00 0.00 2.15
2250 2343 4.202161 CCTGTAATCCTATGAGTCGTGCTT 60.202 45.833 0.00 0.00 0.00 3.91
2274 2367 0.919710 GGTCATCCTTAGGCCCAACT 59.080 55.000 0.00 0.00 0.00 3.16
2331 2429 2.808202 CGGCAGAATGGGGTAAGATCAG 60.808 54.545 0.00 0.00 35.86 2.90
2334 2432 2.103094 CAGAATGGGGTAAGATCAGCGA 59.897 50.000 0.00 0.00 0.00 4.93
2355 2453 1.712081 CGCCTCTTGCATGAACTCG 59.288 57.895 0.00 4.06 41.33 4.18
2359 2457 0.392193 CTCTTGCATGAACTCGGGCT 60.392 55.000 0.00 0.00 0.00 5.19
2362 2460 0.613260 TTGCATGAACTCGGGCTAGT 59.387 50.000 0.00 0.00 0.00 2.57
2384 2482 1.538047 AACTCGATTGCATGCCTTGT 58.462 45.000 16.68 2.73 0.00 3.16
2389 2487 2.924922 GATTGCATGCCTTGTCGCGG 62.925 60.000 16.68 0.00 0.00 6.46
2427 2525 2.295909 TGCGCAAAGAGCCAACTAAATT 59.704 40.909 8.16 0.00 41.38 1.82
2477 2578 1.171308 GCATGTCATGAGCCTTGTGT 58.829 50.000 17.24 0.00 0.00 3.72
2507 2608 5.494632 TTTTAGCATGTCGATCTCTCGTA 57.505 39.130 0.00 0.00 45.25 3.43
2577 2678 7.813852 GACTGTAGTCAACACTAAGGTAATG 57.186 40.000 7.14 0.00 44.18 1.90
2578 2679 6.164176 ACTGTAGTCAACACTAAGGTAATGC 58.836 40.000 0.00 0.00 36.84 3.56
2580 2681 6.707290 TGTAGTCAACACTAAGGTAATGCAT 58.293 36.000 0.00 0.00 36.84 3.96
2581 2682 6.593770 TGTAGTCAACACTAAGGTAATGCATG 59.406 38.462 0.00 0.00 36.84 4.06
2582 2683 5.804639 AGTCAACACTAAGGTAATGCATGA 58.195 37.500 0.00 0.00 0.00 3.07
2584 2685 6.886459 AGTCAACACTAAGGTAATGCATGATT 59.114 34.615 0.00 0.00 0.00 2.57
2586 2687 7.485913 GTCAACACTAAGGTAATGCATGATTTG 59.514 37.037 0.00 0.00 0.00 2.32
2587 2688 6.455360 ACACTAAGGTAATGCATGATTTGG 57.545 37.500 0.00 0.00 0.00 3.28
2588 2689 5.163519 ACACTAAGGTAATGCATGATTTGGC 60.164 40.000 0.00 0.00 0.00 4.52
2589 2690 5.068198 CACTAAGGTAATGCATGATTTGGCT 59.932 40.000 0.00 0.00 0.00 4.75
2590 2691 5.658190 ACTAAGGTAATGCATGATTTGGCTT 59.342 36.000 0.00 0.00 0.00 4.35
2591 2692 5.425196 AAGGTAATGCATGATTTGGCTTT 57.575 34.783 0.00 0.00 0.00 3.51
2592 2693 5.425196 AGGTAATGCATGATTTGGCTTTT 57.575 34.783 0.00 0.00 0.00 2.27
2593 2694 6.543430 AGGTAATGCATGATTTGGCTTTTA 57.457 33.333 0.00 0.00 0.00 1.52
2595 2696 6.818142 AGGTAATGCATGATTTGGCTTTTAAC 59.182 34.615 0.00 0.00 0.00 2.01
2596 2697 6.593382 GGTAATGCATGATTTGGCTTTTAACA 59.407 34.615 0.00 0.00 0.00 2.41
2598 2699 7.507733 AATGCATGATTTGGCTTTTAACAAA 57.492 28.000 0.00 0.00 40.44 2.83
2599 2700 6.932356 TGCATGATTTGGCTTTTAACAAAA 57.068 29.167 0.00 0.00 39.69 2.44
2601 2702 8.613060 TGCATGATTTGGCTTTTAACAAAATA 57.387 26.923 0.00 0.00 39.69 1.40
2603 2704 7.693536 GCATGATTTGGCTTTTAACAAAATAGC 59.306 33.333 0.00 0.00 39.69 2.97
2604 2705 8.719648 CATGATTTGGCTTTTAACAAAATAGCA 58.280 29.630 0.00 0.00 39.69 3.49
2605 2706 8.082334 TGATTTGGCTTTTAACAAAATAGCAC 57.918 30.769 0.00 0.00 39.69 4.40
2606 2707 7.712639 TGATTTGGCTTTTAACAAAATAGCACA 59.287 29.630 0.00 0.00 39.69 4.57
2607 2708 7.475771 TTTGGCTTTTAACAAAATAGCACAG 57.524 32.000 0.00 0.00 34.00 3.66
2609 2710 5.982516 TGGCTTTTAACAAAATAGCACAGTG 59.017 36.000 0.00 0.00 0.00 3.66
2610 2711 5.405269 GGCTTTTAACAAAATAGCACAGTGG 59.595 40.000 1.84 0.00 0.00 4.00
2611 2712 5.107491 GCTTTTAACAAAATAGCACAGTGGC 60.107 40.000 1.84 0.00 0.00 5.01
2612 2713 4.513198 TTAACAAAATAGCACAGTGGCC 57.487 40.909 1.84 0.00 0.00 5.36
2613 2714 0.881118 ACAAAATAGCACAGTGGCCG 59.119 50.000 1.84 0.00 0.00 6.13
2614 2715 0.456653 CAAAATAGCACAGTGGCCGC 60.457 55.000 8.71 8.71 0.00 6.53
2615 2716 1.922135 AAAATAGCACAGTGGCCGCG 61.922 55.000 11.42 8.63 0.00 6.46
2620 2721 4.764336 CACAGTGGCCGCGCATTG 62.764 66.667 11.42 6.16 0.00 2.82
2644 3169 3.013921 CCGGCAACAACTTACCATGTAT 58.986 45.455 0.00 0.00 0.00 2.29
2649 3174 7.254852 CGGCAACAACTTACCATGTATAAATT 58.745 34.615 0.00 0.00 0.00 1.82
2674 3199 8.870160 TTAACCATTTGTTGTCTCAAAATCTG 57.130 30.769 0.00 0.00 40.05 2.90
2675 3200 5.291971 ACCATTTGTTGTCTCAAAATCTGC 58.708 37.500 0.00 0.00 40.05 4.26
2677 3202 4.998671 TTTGTTGTCTCAAAATCTGCCA 57.001 36.364 0.00 0.00 34.90 4.92
2679 3204 5.534207 TTGTTGTCTCAAAATCTGCCATT 57.466 34.783 0.00 0.00 0.00 3.16
2680 3205 6.647334 TTGTTGTCTCAAAATCTGCCATTA 57.353 33.333 0.00 0.00 0.00 1.90
2681 3206 6.012658 TGTTGTCTCAAAATCTGCCATTAC 57.987 37.500 0.00 0.00 0.00 1.89
2682 3207 5.534278 TGTTGTCTCAAAATCTGCCATTACA 59.466 36.000 0.00 0.00 0.00 2.41
2683 3208 5.627499 TGTCTCAAAATCTGCCATTACAC 57.373 39.130 0.00 0.00 0.00 2.90
2684 3209 5.069318 TGTCTCAAAATCTGCCATTACACA 58.931 37.500 0.00 0.00 0.00 3.72
2685 3210 5.048782 TGTCTCAAAATCTGCCATTACACAC 60.049 40.000 0.00 0.00 0.00 3.82
2686 3211 5.048782 GTCTCAAAATCTGCCATTACACACA 60.049 40.000 0.00 0.00 0.00 3.72
2687 3212 5.181811 TCTCAAAATCTGCCATTACACACAG 59.818 40.000 0.00 0.00 0.00 3.66
2688 3213 5.069318 TCAAAATCTGCCATTACACACAGA 58.931 37.500 0.00 0.00 42.89 3.41
2690 3215 6.040278 TCAAAATCTGCCATTACACACAGAAA 59.960 34.615 0.00 0.00 42.08 2.52
2692 3217 7.701539 AAATCTGCCATTACACACAGAAATA 57.298 32.000 0.00 0.00 42.08 1.40
2697 3222 8.892723 TCTGCCATTACACACAGAAATATTTAG 58.107 33.333 0.00 0.00 36.27 1.85
2698 3223 8.574251 TGCCATTACACACAGAAATATTTAGT 57.426 30.769 0.00 0.38 0.00 2.24
2768 7999 8.594550 ACTTTTAGAATAGTTCTTAGTGGAGCA 58.405 33.333 0.00 0.00 41.14 4.26
2769 8000 8.773404 TTTTAGAATAGTTCTTAGTGGAGCAC 57.227 34.615 0.00 0.00 41.14 4.40
2771 8002 6.552445 AGAATAGTTCTTAGTGGAGCACAT 57.448 37.500 0.00 0.00 36.36 3.21
2772 8003 6.951971 AGAATAGTTCTTAGTGGAGCACATT 58.048 36.000 0.00 0.00 36.36 2.71
2774 8005 4.357918 AGTTCTTAGTGGAGCACATTGT 57.642 40.909 0.00 0.00 36.74 2.71
2775 8006 4.319177 AGTTCTTAGTGGAGCACATTGTC 58.681 43.478 0.00 0.00 36.74 3.18
2776 8007 2.959516 TCTTAGTGGAGCACATTGTCG 58.040 47.619 0.00 0.00 36.74 4.35
2777 8008 2.002586 CTTAGTGGAGCACATTGTCGG 58.997 52.381 0.00 0.00 36.74 4.79
2778 8009 0.249120 TAGTGGAGCACATTGTCGGG 59.751 55.000 0.00 0.00 36.74 5.14
2779 8010 1.302511 GTGGAGCACATTGTCGGGT 60.303 57.895 0.00 0.00 34.08 5.28
2780 8011 0.036765 GTGGAGCACATTGTCGGGTA 60.037 55.000 0.00 0.00 34.08 3.69
2781 8012 0.687920 TGGAGCACATTGTCGGGTAA 59.312 50.000 0.00 0.00 0.00 2.85
2784 8015 3.055021 TGGAGCACATTGTCGGGTAATAA 60.055 43.478 0.00 0.00 0.00 1.40
2785 8016 3.560068 GGAGCACATTGTCGGGTAATAAG 59.440 47.826 0.00 0.00 0.00 1.73
2786 8017 2.943033 AGCACATTGTCGGGTAATAAGC 59.057 45.455 0.00 0.00 0.00 3.09
2787 8018 2.032924 GCACATTGTCGGGTAATAAGCC 59.967 50.000 0.00 0.00 40.07 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.494960 TTCTTTGTTGCTTTGCCCCT 58.505 45.000 0.00 0.00 0.00 4.79
117 119 1.576272 AGGACTAGAGTAGTGGCCCAT 59.424 52.381 0.00 0.00 39.59 4.00
150 152 1.471287 GTAATCTTTTGTCCACGGGCC 59.529 52.381 0.00 0.00 0.00 5.80
188 190 9.829507 AAATCCTCTAGACTGAAATTATGTCTG 57.170 33.333 14.35 1.06 40.70 3.51
210 212 6.694411 AGATGACGCAAGCATAAATTGAAATC 59.306 34.615 0.00 0.00 45.62 2.17
247 273 3.565482 CGTCAAATGGTCCATATCCCAAG 59.435 47.826 4.33 0.00 33.66 3.61
277 303 6.370367 CCTGTCAGAGACTGAAATGCAGGA 62.370 50.000 21.15 0.00 45.67 3.86
302 328 2.357836 CCACCAAGCATGAGGCCT 59.642 61.111 3.86 3.86 46.50 5.19
307 333 2.159490 TGGGTCCCACCAAGCATGA 61.159 57.895 6.47 0.00 41.02 3.07
327 353 1.549620 CTGCCTCTGAGTCACTGACAT 59.450 52.381 11.80 0.00 34.60 3.06
341 367 1.893786 ACGTGAGTGATCCTGCCTC 59.106 57.895 0.00 0.00 46.97 4.70
352 378 1.686110 GGGATCCCCTGACGTGAGT 60.686 63.158 21.42 0.00 44.83 3.41
363 389 3.728373 ACAAGGCACGGGGATCCC 61.728 66.667 23.95 23.95 41.09 3.85
395 421 7.112984 GCGTTTGTACCACATTTCTAAGAAAAG 59.887 37.037 0.00 0.00 0.00 2.27
402 428 4.633175 TCTGCGTTTGTACCACATTTCTA 58.367 39.130 0.00 0.00 0.00 2.10
403 429 3.472652 TCTGCGTTTGTACCACATTTCT 58.527 40.909 0.00 0.00 0.00 2.52
404 430 3.889196 TCTGCGTTTGTACCACATTTC 57.111 42.857 0.00 0.00 0.00 2.17
407 433 2.778299 ACATCTGCGTTTGTACCACAT 58.222 42.857 0.00 0.00 0.00 3.21
408 434 2.248280 ACATCTGCGTTTGTACCACA 57.752 45.000 0.00 0.00 0.00 4.17
409 435 3.551551 GAAACATCTGCGTTTGTACCAC 58.448 45.455 0.00 0.00 39.17 4.16
410 436 2.550606 GGAAACATCTGCGTTTGTACCA 59.449 45.455 0.00 0.00 39.17 3.25
420 446 5.195001 TGGTTAAACAAGGAAACATCTGC 57.805 39.130 0.00 0.00 0.00 4.26
427 453 6.536941 GCACTTGAAATGGTTAAACAAGGAAA 59.463 34.615 0.00 0.00 41.15 3.13
457 483 3.944650 TGAACAATATGCGGCATAACACT 59.055 39.130 24.94 11.35 29.74 3.55
489 515 5.119694 GCAAAAGTTGAACCAATTACCCAA 58.880 37.500 0.00 0.00 0.00 4.12
491 517 4.698575 TGCAAAAGTTGAACCAATTACCC 58.301 39.130 0.00 0.00 0.00 3.69
492 518 6.705825 AGAATGCAAAAGTTGAACCAATTACC 59.294 34.615 0.00 0.00 0.00 2.85
505 531 6.715280 TGGAGAGATTAGAGAATGCAAAAGT 58.285 36.000 0.00 0.00 0.00 2.66
553 579 3.240069 GCAAACTGCAAGCACTTCTATG 58.760 45.455 0.00 0.00 44.26 2.23
605 631 2.039084 TCTTCAGGGCTTGGTCTCTTTC 59.961 50.000 0.00 0.00 0.00 2.62
606 632 2.039613 CTCTTCAGGGCTTGGTCTCTTT 59.960 50.000 0.00 0.00 0.00 2.52
612 638 2.310538 CAAAACTCTTCAGGGCTTGGT 58.689 47.619 0.00 0.00 0.00 3.67
636 662 1.601759 AACAGCGCAGAACCAGCAT 60.602 52.632 11.47 0.00 0.00 3.79
649 675 1.006922 GCTGGCCAAGTTCAACAGC 60.007 57.895 7.01 0.00 46.24 4.40
651 677 2.192861 CGGCTGGCCAAGTTCAACA 61.193 57.895 7.01 0.00 35.37 3.33
692 718 2.494918 GGGTCGGACAGTCCATCG 59.505 66.667 20.13 5.90 35.91 3.84
711 737 4.079253 GTCCAGTTGAACCCATGTAACAT 58.921 43.478 0.00 0.00 0.00 2.71
712 738 3.137544 AGTCCAGTTGAACCCATGTAACA 59.862 43.478 0.00 0.00 0.00 2.41
716 742 2.708861 TGTAGTCCAGTTGAACCCATGT 59.291 45.455 0.00 0.00 0.00 3.21
723 749 5.128171 AGTTAGTGTGTGTAGTCCAGTTGAA 59.872 40.000 0.00 0.00 0.00 2.69
730 756 8.137437 TGTTAGTTTAGTTAGTGTGTGTAGTCC 58.863 37.037 0.00 0.00 0.00 3.85
731 757 9.688592 ATGTTAGTTTAGTTAGTGTGTGTAGTC 57.311 33.333 0.00 0.00 0.00 2.59
781 807 8.386606 CGTGAGTACTTAGTTCGTTAGTATCTT 58.613 37.037 0.00 0.00 0.00 2.40
861 890 4.865365 CCTTGATCTTCTCACGTACCTTTC 59.135 45.833 0.00 0.00 32.17 2.62
875 904 5.989477 TCCATATCGTGTTTCCTTGATCTT 58.011 37.500 0.00 0.00 0.00 2.40
995 1024 1.058695 GCGACGAACGTCTTATGGTTG 59.941 52.381 21.67 7.71 42.54 3.77
1007 1036 0.796312 ATGTGAATGGTGCGACGAAC 59.204 50.000 0.00 0.00 0.00 3.95
1013 1042 1.430632 GCCAGATGTGAATGGTGCG 59.569 57.895 0.00 0.00 38.91 5.34
1070 1099 1.162800 GCGAGATGGGACTTGGATGC 61.163 60.000 0.00 0.00 0.00 3.91
1331 1372 1.888436 TTCGGCTGAGGCTTCGATGT 61.888 55.000 4.02 0.00 38.73 3.06
1528 1569 0.107361 TCTCTCTATCCACGGTCGCA 60.107 55.000 0.00 0.00 0.00 5.10
1558 1599 2.315011 GAGTCGCAGATGATCATCGTC 58.685 52.381 26.09 20.39 42.48 4.20
1582 1623 1.272212 CAAGAACCAAATTCACCGGGG 59.728 52.381 6.32 0.00 40.09 5.73
1619 1660 0.861155 ATGGTACCGGGAGAGGAGAT 59.139 55.000 6.32 0.00 34.73 2.75
1629 1673 7.562454 AATGAAAGTTTACATATGGTACCGG 57.438 36.000 7.57 0.00 0.00 5.28
1636 1680 6.867799 TGCGCAAATGAAAGTTTACATATG 57.132 33.333 8.16 0.00 0.00 1.78
1641 1685 6.452244 AGAAATGCGCAAATGAAAGTTTAC 57.548 33.333 17.11 2.58 0.00 2.01
1650 1694 6.636666 AAGACAATAAGAAATGCGCAAATG 57.363 33.333 17.11 1.98 0.00 2.32
1651 1695 8.028938 ACTAAAGACAATAAGAAATGCGCAAAT 58.971 29.630 17.11 5.97 0.00 2.32
1676 1745 8.725148 ACTCAGATACATCAAAAAGATTCACAC 58.275 33.333 0.00 0.00 33.72 3.82
1694 1764 0.324368 ACGGGTCCTGCACTCAGATA 60.324 55.000 0.00 0.00 42.95 1.98
1698 1768 4.314440 GCACGGGTCCTGCACTCA 62.314 66.667 0.00 0.00 34.56 3.41
1889 1972 9.213799 AGAGCAAATCAAGAGAAGTTAAAGTAG 57.786 33.333 0.00 0.00 0.00 2.57
1932 2019 5.209977 TGTAATGCTGCTATTACGTACGAG 58.790 41.667 24.41 9.94 43.28 4.18
1937 2024 5.872617 TGTTTCTGTAATGCTGCTATTACGT 59.127 36.000 19.93 0.00 43.28 3.57
1940 2027 8.615211 CATCTTGTTTCTGTAATGCTGCTATTA 58.385 33.333 0.00 1.10 0.00 0.98
1941 2028 7.478322 CATCTTGTTTCTGTAATGCTGCTATT 58.522 34.615 0.00 2.07 0.00 1.73
1942 2029 6.459298 GCATCTTGTTTCTGTAATGCTGCTAT 60.459 38.462 0.00 0.00 37.21 2.97
1971 2058 1.746615 GGCATCTTCAGCTTCCGCA 60.747 57.895 0.00 0.00 39.10 5.69
1972 2059 2.817423 CGGCATCTTCAGCTTCCGC 61.817 63.158 0.00 0.00 0.00 5.54
1973 2060 0.179111 TACGGCATCTTCAGCTTCCG 60.179 55.000 0.00 0.00 42.24 4.30
2016 2103 8.638629 ACTAAGAACTAGCACTCTCTTCTAAA 57.361 34.615 0.00 0.00 30.90 1.85
2116 2207 2.853457 CAACGGTTGCACACTTTCG 58.147 52.632 8.09 0.00 0.00 3.46
2135 2226 7.759886 TCGAAGACTCCTTAATCAAACACATAG 59.240 37.037 0.00 0.00 31.62 2.23
2150 2242 8.625651 GCACACATATATATATCGAAGACTCCT 58.374 37.037 2.03 0.00 42.51 3.69
2188 2280 7.623925 GCGCATTTTTGGAATATTGATGTGTTT 60.624 33.333 0.30 0.00 0.00 2.83
2192 2285 4.810491 GGCGCATTTTTGGAATATTGATGT 59.190 37.500 10.83 0.00 0.00 3.06
2198 2291 4.432712 GACTTGGCGCATTTTTGGAATAT 58.567 39.130 10.83 0.00 0.00 1.28
2201 2294 1.270041 GGACTTGGCGCATTTTTGGAA 60.270 47.619 10.83 0.00 0.00 3.53
2205 2298 2.890945 ACTAAGGACTTGGCGCATTTTT 59.109 40.909 10.83 0.00 0.00 1.94
2241 2334 0.106708 ATGACCACACAAGCACGACT 59.893 50.000 0.00 0.00 0.00 4.18
2250 2343 0.618458 GGCCTAAGGATGACCACACA 59.382 55.000 0.00 0.00 38.94 3.72
2274 2367 0.531090 CGTGTTGGTCTTTGGGTCGA 60.531 55.000 0.00 0.00 0.00 4.20
2311 2409 2.856222 CTGATCTTACCCCATTCTGCC 58.144 52.381 0.00 0.00 0.00 4.85
2313 2411 2.103094 TCGCTGATCTTACCCCATTCTG 59.897 50.000 0.00 0.00 0.00 3.02
2355 2453 1.666189 GCAATCGAGTTTCACTAGCCC 59.334 52.381 0.00 0.00 0.00 5.19
2359 2457 2.677836 GGCATGCAATCGAGTTTCACTA 59.322 45.455 21.36 0.00 0.00 2.74
2362 2460 1.825090 AGGCATGCAATCGAGTTTCA 58.175 45.000 21.36 0.00 0.00 2.69
2427 2525 8.210946 CCCACTCAATCAAGTATATCACCTAAA 58.789 37.037 0.00 0.00 0.00 1.85
2441 2539 1.377202 GCTCCGCCCACTCAATCAA 60.377 57.895 0.00 0.00 0.00 2.57
2451 2552 1.890979 CTCATGACATGCTCCGCCC 60.891 63.158 10.76 0.00 0.00 6.13
2462 2563 2.229792 TGGAAACACAAGGCTCATGAC 58.770 47.619 5.07 0.00 33.40 3.06
2463 2564 2.655090 TGGAAACACAAGGCTCATGA 57.345 45.000 5.07 0.00 33.40 3.07
2477 2578 5.647658 AGATCGACATGCTAAAATGTGGAAA 59.352 36.000 6.19 0.00 44.87 3.13
2553 2654 6.310711 GCATTACCTTAGTGTTGACTACAGTC 59.689 42.308 0.40 2.29 44.97 3.51
2554 2655 6.164176 GCATTACCTTAGTGTTGACTACAGT 58.836 40.000 2.92 2.92 42.95 3.55
2555 2656 6.163476 TGCATTACCTTAGTGTTGACTACAG 58.837 40.000 0.00 0.00 37.45 2.74
2556 2657 6.104146 TGCATTACCTTAGTGTTGACTACA 57.896 37.500 0.00 0.00 34.23 2.74
2557 2658 6.816640 TCATGCATTACCTTAGTGTTGACTAC 59.183 38.462 0.00 0.00 34.23 2.73
2560 2661 6.683974 ATCATGCATTACCTTAGTGTTGAC 57.316 37.500 0.00 0.00 0.00 3.18
2561 2662 7.362834 CCAAATCATGCATTACCTTAGTGTTGA 60.363 37.037 0.00 0.00 0.00 3.18
2562 2663 6.753279 CCAAATCATGCATTACCTTAGTGTTG 59.247 38.462 0.00 0.00 0.00 3.33
2564 2665 5.163519 GCCAAATCATGCATTACCTTAGTGT 60.164 40.000 0.00 0.00 0.00 3.55
2565 2666 5.068198 AGCCAAATCATGCATTACCTTAGTG 59.932 40.000 0.00 0.00 0.00 2.74
2566 2667 5.203528 AGCCAAATCATGCATTACCTTAGT 58.796 37.500 0.00 0.00 0.00 2.24
2568 2669 6.543430 AAAGCCAAATCATGCATTACCTTA 57.457 33.333 0.00 0.00 0.00 2.69
2574 2675 7.507733 TTTGTTAAAAGCCAAATCATGCATT 57.492 28.000 0.00 0.00 0.00 3.56
2575 2676 7.507733 TTTTGTTAAAAGCCAAATCATGCAT 57.492 28.000 0.00 0.00 31.20 3.96
2576 2677 6.932356 TTTTGTTAAAAGCCAAATCATGCA 57.068 29.167 0.00 0.00 31.20 3.96
2577 2678 7.693536 GCTATTTTGTTAAAAGCCAAATCATGC 59.306 33.333 0.00 0.00 33.22 4.06
2578 2679 8.719648 TGCTATTTTGTTAAAAGCCAAATCATG 58.280 29.630 0.00 0.00 33.22 3.07
2580 2681 7.712639 TGTGCTATTTTGTTAAAAGCCAAATCA 59.287 29.630 0.00 0.00 33.22 2.57
2581 2682 8.082334 TGTGCTATTTTGTTAAAAGCCAAATC 57.918 30.769 0.00 0.00 33.22 2.17
2582 2683 7.714813 ACTGTGCTATTTTGTTAAAAGCCAAAT 59.285 29.630 0.00 0.00 33.22 2.32
2584 2685 6.478344 CACTGTGCTATTTTGTTAAAAGCCAA 59.522 34.615 0.00 0.00 33.22 4.52
2586 2687 5.405269 CCACTGTGCTATTTTGTTAAAAGCC 59.595 40.000 1.29 0.00 33.22 4.35
2587 2688 5.107491 GCCACTGTGCTATTTTGTTAAAAGC 60.107 40.000 1.29 0.00 33.22 3.51
2588 2689 5.405269 GGCCACTGTGCTATTTTGTTAAAAG 59.595 40.000 0.00 0.00 33.22 2.27
2589 2690 5.293560 GGCCACTGTGCTATTTTGTTAAAA 58.706 37.500 0.00 0.00 34.41 1.52
2590 2691 4.557695 CGGCCACTGTGCTATTTTGTTAAA 60.558 41.667 2.24 0.00 0.00 1.52
2591 2692 3.057876 CGGCCACTGTGCTATTTTGTTAA 60.058 43.478 2.24 0.00 0.00 2.01
2592 2693 2.486203 CGGCCACTGTGCTATTTTGTTA 59.514 45.455 2.24 0.00 0.00 2.41
2593 2694 1.269448 CGGCCACTGTGCTATTTTGTT 59.731 47.619 2.24 0.00 0.00 2.83
2595 2696 0.456653 GCGGCCACTGTGCTATTTTG 60.457 55.000 2.24 0.00 0.00 2.44
2596 2697 1.883021 GCGGCCACTGTGCTATTTT 59.117 52.632 2.24 0.00 0.00 1.82
2598 2699 2.819595 CGCGGCCACTGTGCTATT 60.820 61.111 2.24 0.00 0.00 1.73
2603 2704 4.764336 CAATGCGCGGCCACTGTG 62.764 66.667 8.83 0.00 0.00 3.66
2620 2721 0.887387 TGGTAAGTTGTTGCCGGAGC 60.887 55.000 5.05 0.00 41.23 4.70
2621 2722 1.468520 CATGGTAAGTTGTTGCCGGAG 59.531 52.381 5.05 0.00 41.23 4.63
2622 2723 1.202830 ACATGGTAAGTTGTTGCCGGA 60.203 47.619 5.05 0.00 41.23 5.14
2624 2725 5.804692 TTATACATGGTAAGTTGTTGCCG 57.195 39.130 0.00 0.00 41.23 5.69
2625 2726 8.996024 AAATTTATACATGGTAAGTTGTTGCC 57.004 30.769 0.00 0.00 38.87 4.52
2649 3174 7.437862 GCAGATTTTGAGACAACAAATGGTTAA 59.562 33.333 0.00 0.00 37.72 2.01
2653 3178 4.687483 GGCAGATTTTGAGACAACAAATGG 59.313 41.667 0.00 0.00 39.09 3.16
2654 3179 5.291178 TGGCAGATTTTGAGACAACAAATG 58.709 37.500 0.00 0.00 39.09 2.32
2658 3183 5.534278 TGTAATGGCAGATTTTGAGACAACA 59.466 36.000 0.00 0.00 0.00 3.33
2659 3184 5.858581 GTGTAATGGCAGATTTTGAGACAAC 59.141 40.000 0.00 0.00 0.00 3.32
2660 3185 5.534278 TGTGTAATGGCAGATTTTGAGACAA 59.466 36.000 0.00 0.00 0.00 3.18
2661 3186 5.048782 GTGTGTAATGGCAGATTTTGAGACA 60.049 40.000 0.00 0.00 0.00 3.41
2662 3187 5.048782 TGTGTGTAATGGCAGATTTTGAGAC 60.049 40.000 0.00 0.00 0.00 3.36
2664 3189 5.181811 TCTGTGTGTAATGGCAGATTTTGAG 59.818 40.000 0.00 0.00 33.62 3.02
2666 3191 5.375417 TCTGTGTGTAATGGCAGATTTTG 57.625 39.130 0.00 0.00 33.62 2.44
2667 3192 6.403866 TTTCTGTGTGTAATGGCAGATTTT 57.596 33.333 0.00 0.00 37.74 1.82
2669 3194 7.886629 ATATTTCTGTGTGTAATGGCAGATT 57.113 32.000 0.00 0.00 37.74 2.40
2670 3195 7.886629 AATATTTCTGTGTGTAATGGCAGAT 57.113 32.000 0.00 0.00 37.74 2.90
2672 3197 8.677300 ACTAAATATTTCTGTGTGTAATGGCAG 58.323 33.333 3.39 0.00 0.00 4.85
2674 3199 9.855021 AAACTAAATATTTCTGTGTGTAATGGC 57.145 29.630 3.39 0.00 0.00 4.40
2743 4329 8.874816 GTGCTCCACTAAGAACTATTCTAAAAG 58.125 37.037 0.00 0.00 39.61 2.27
2745 4331 7.903145 TGTGCTCCACTAAGAACTATTCTAAA 58.097 34.615 0.00 0.00 35.57 1.85
2750 4336 6.476378 ACAATGTGCTCCACTAAGAACTATT 58.524 36.000 0.00 0.00 35.11 1.73
2751 4337 6.054860 ACAATGTGCTCCACTAAGAACTAT 57.945 37.500 0.00 0.00 35.11 2.12
2763 7994 2.038387 ATTACCCGACAATGTGCTCC 57.962 50.000 0.00 0.00 0.00 4.70
2764 7995 3.002348 GCTTATTACCCGACAATGTGCTC 59.998 47.826 0.00 0.00 0.00 4.26
2765 7996 2.943033 GCTTATTACCCGACAATGTGCT 59.057 45.455 0.00 0.00 0.00 4.40
2766 7997 2.032924 GGCTTATTACCCGACAATGTGC 59.967 50.000 0.00 0.00 0.00 4.57
2767 7998 3.963383 GGCTTATTACCCGACAATGTG 57.037 47.619 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.