Multiple sequence alignment - TraesCS2A01G058500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G058500 chr2A 100.000 2603 0 0 1 2603 24524900 24522298 0.000000e+00 4807
1 TraesCS2A01G058500 chr2A 94.830 2031 50 19 601 2603 678534727 678536730 0.000000e+00 3118
2 TraesCS2A01G058500 chr7A 95.667 2031 43 13 601 2603 652135182 652133169 0.000000e+00 3221
3 TraesCS2A01G058500 chr7A 95.156 2023 61 14 601 2603 546507307 546505302 0.000000e+00 3158
4 TraesCS2A01G058500 chr7A 86.607 112 11 4 75 184 155598203 155598094 1.270000e-23 121
5 TraesCS2A01G058500 chr1A 95.468 2030 51 12 601 2603 570009040 570011055 0.000000e+00 3201
6 TraesCS2A01G058500 chr4A 95.434 2015 50 12 601 2587 620625878 620623878 0.000000e+00 3173
7 TraesCS2A01G058500 chr4A 95.146 1195 28 7 1426 2603 667234145 667235326 0.000000e+00 1858
8 TraesCS2A01G058500 chr4A 94.983 1196 29 8 1426 2603 667256145 667257327 0.000000e+00 1847
9 TraesCS2A01G058500 chr4A 94.979 1195 29 7 1426 2603 667278351 667279531 0.000000e+00 1845
10 TraesCS2A01G058500 chr4A 87.387 111 10 4 75 183 647337521 647337629 9.780000e-25 124
11 TraesCS2A01G058500 chr6D 94.750 2038 56 17 601 2603 390006828 390008849 0.000000e+00 3123
12 TraesCS2A01G058500 chr6D 94.891 1194 29 10 1425 2603 429707353 429706177 0.000000e+00 1838
13 TraesCS2A01G058500 chr5D 94.752 2039 53 17 601 2603 399910101 399912121 0.000000e+00 3123
14 TraesCS2A01G058500 chr5D 87.500 112 10 4 74 183 548801481 548801590 2.720000e-25 126
15 TraesCS2A01G058500 chrUn 95.457 1827 47 13 601 2392 30431622 30429797 0.000000e+00 2881
16 TraesCS2A01G058500 chrUn 88.128 219 24 2 383 600 461513129 461512912 2.570000e-65 259
17 TraesCS2A01G058500 chrUn 86.607 112 11 4 75 184 23964874 23964765 1.270000e-23 121
18 TraesCS2A01G058500 chr5A 94.984 1834 47 15 601 2392 666943209 666941379 0.000000e+00 2835
19 TraesCS2A01G058500 chr5A 94.495 109 6 0 75 183 709158699 709158807 4.460000e-38 169
20 TraesCS2A01G058500 chr5B 93.102 1870 68 25 601 2423 710949459 710951314 0.000000e+00 2682
21 TraesCS2A01G058500 chr2D 94.636 1715 35 23 932 2603 31942691 31940991 0.000000e+00 2604
22 TraesCS2A01G058500 chr7D 89.505 2039 114 39 601 2603 272591465 272589491 0.000000e+00 2488
23 TraesCS2A01G058500 chr4D 91.581 1841 66 40 808 2603 454441530 454443326 0.000000e+00 2459
24 TraesCS2A01G058500 chr4D 92.693 1656 42 26 990 2603 143572645 143571027 0.000000e+00 2314
25 TraesCS2A01G058500 chr3D 95.322 1197 25 10 1425 2602 57164786 57165970 0.000000e+00 1871
26 TraesCS2A01G058500 chr3D 94.653 1197 23 11 1424 2603 597876148 597874976 0.000000e+00 1818
27 TraesCS2A01G058500 chr3A 94.781 1188 32 10 1426 2600 28273436 28274606 0.000000e+00 1823
28 TraesCS2A01G058500 chr1D 94.221 1194 25 11 1425 2603 3719070 3720234 0.000000e+00 1783
29 TraesCS2A01G058500 chr1D 96.131 827 26 3 601 1425 413307458 413306636 0.000000e+00 1345
30 TraesCS2A01G058500 chr7B 93.897 1065 39 10 1425 2471 709928002 709929058 0.000000e+00 1583
31 TraesCS2A01G058500 chr7B 87.387 111 10 4 75 183 157137366 157137474 9.780000e-25 124
32 TraesCS2A01G058500 chr7B 87.387 111 10 4 75 183 440191154 440191262 9.780000e-25 124
33 TraesCS2A01G058500 chr3B 96.233 823 26 3 605 1423 812910294 812911115 0.000000e+00 1343
34 TraesCS2A01G058500 chr2B 82.292 384 36 20 246 600 37436197 37436577 1.170000e-78 303
35 TraesCS2A01G058500 chr6B 87.611 113 10 4 75 185 660663363 660663473 7.560000e-26 128
36 TraesCS2A01G058500 chr6B 86.087 115 13 3 71 184 715619734 715619846 1.270000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G058500 chr2A 24522298 24524900 2602 True 4807 4807 100.000 1 2603 1 chr2A.!!$R1 2602
1 TraesCS2A01G058500 chr2A 678534727 678536730 2003 False 3118 3118 94.830 601 2603 1 chr2A.!!$F1 2002
2 TraesCS2A01G058500 chr7A 652133169 652135182 2013 True 3221 3221 95.667 601 2603 1 chr7A.!!$R3 2002
3 TraesCS2A01G058500 chr7A 546505302 546507307 2005 True 3158 3158 95.156 601 2603 1 chr7A.!!$R2 2002
4 TraesCS2A01G058500 chr1A 570009040 570011055 2015 False 3201 3201 95.468 601 2603 1 chr1A.!!$F1 2002
5 TraesCS2A01G058500 chr4A 620623878 620625878 2000 True 3173 3173 95.434 601 2587 1 chr4A.!!$R1 1986
6 TraesCS2A01G058500 chr4A 667234145 667235326 1181 False 1858 1858 95.146 1426 2603 1 chr4A.!!$F2 1177
7 TraesCS2A01G058500 chr4A 667256145 667257327 1182 False 1847 1847 94.983 1426 2603 1 chr4A.!!$F3 1177
8 TraesCS2A01G058500 chr4A 667278351 667279531 1180 False 1845 1845 94.979 1426 2603 1 chr4A.!!$F4 1177
9 TraesCS2A01G058500 chr6D 390006828 390008849 2021 False 3123 3123 94.750 601 2603 1 chr6D.!!$F1 2002
10 TraesCS2A01G058500 chr6D 429706177 429707353 1176 True 1838 1838 94.891 1425 2603 1 chr6D.!!$R1 1178
11 TraesCS2A01G058500 chr5D 399910101 399912121 2020 False 3123 3123 94.752 601 2603 1 chr5D.!!$F1 2002
12 TraesCS2A01G058500 chrUn 30429797 30431622 1825 True 2881 2881 95.457 601 2392 1 chrUn.!!$R2 1791
13 TraesCS2A01G058500 chr5A 666941379 666943209 1830 True 2835 2835 94.984 601 2392 1 chr5A.!!$R1 1791
14 TraesCS2A01G058500 chr5B 710949459 710951314 1855 False 2682 2682 93.102 601 2423 1 chr5B.!!$F1 1822
15 TraesCS2A01G058500 chr2D 31940991 31942691 1700 True 2604 2604 94.636 932 2603 1 chr2D.!!$R1 1671
16 TraesCS2A01G058500 chr7D 272589491 272591465 1974 True 2488 2488 89.505 601 2603 1 chr7D.!!$R1 2002
17 TraesCS2A01G058500 chr4D 454441530 454443326 1796 False 2459 2459 91.581 808 2603 1 chr4D.!!$F1 1795
18 TraesCS2A01G058500 chr4D 143571027 143572645 1618 True 2314 2314 92.693 990 2603 1 chr4D.!!$R1 1613
19 TraesCS2A01G058500 chr3D 57164786 57165970 1184 False 1871 1871 95.322 1425 2602 1 chr3D.!!$F1 1177
20 TraesCS2A01G058500 chr3D 597874976 597876148 1172 True 1818 1818 94.653 1424 2603 1 chr3D.!!$R1 1179
21 TraesCS2A01G058500 chr3A 28273436 28274606 1170 False 1823 1823 94.781 1426 2600 1 chr3A.!!$F1 1174
22 TraesCS2A01G058500 chr1D 3719070 3720234 1164 False 1783 1783 94.221 1425 2603 1 chr1D.!!$F1 1178
23 TraesCS2A01G058500 chr1D 413306636 413307458 822 True 1345 1345 96.131 601 1425 1 chr1D.!!$R1 824
24 TraesCS2A01G058500 chr7B 709928002 709929058 1056 False 1583 1583 93.897 1425 2471 1 chr7B.!!$F3 1046
25 TraesCS2A01G058500 chr3B 812910294 812911115 821 False 1343 1343 96.233 605 1423 1 chr3B.!!$F1 818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 537 0.031314 CACATGATCTCCCTCCGTCG 59.969 60.0 0.0 0.0 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2425 2539 1.354101 TCGGGCCTAAAGTTTCTCCA 58.646 50.0 0.84 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.814577 AGTTCGAATCTCACCCACG 57.185 52.632 0.00 0.00 0.00 4.94
19 20 0.389948 AGTTCGAATCTCACCCACGC 60.390 55.000 0.00 0.00 0.00 5.34
20 21 1.445410 TTCGAATCTCACCCACGCG 60.445 57.895 3.53 3.53 0.00 6.01
21 22 2.126071 CGAATCTCACCCACGCGT 60.126 61.111 5.58 5.58 0.00 6.01
22 23 1.138036 CGAATCTCACCCACGCGTA 59.862 57.895 13.44 0.00 0.00 4.42
23 24 0.248907 CGAATCTCACCCACGCGTAT 60.249 55.000 13.44 0.00 0.00 3.06
24 25 1.002142 CGAATCTCACCCACGCGTATA 60.002 52.381 13.44 0.00 0.00 1.47
25 26 2.662700 GAATCTCACCCACGCGTATAG 58.337 52.381 13.44 6.06 0.00 1.31
26 27 0.959553 ATCTCACCCACGCGTATAGG 59.040 55.000 13.44 16.20 0.00 2.57
31 32 3.464207 CCCACGCGTATAGGGTTTT 57.536 52.632 21.83 0.00 44.10 2.43
32 33 1.741528 CCCACGCGTATAGGGTTTTT 58.258 50.000 21.83 0.00 44.10 1.94
100 101 7.728847 ACAGAAACAAAATAAAGAAATGGGC 57.271 32.000 0.00 0.00 0.00 5.36
101 102 6.710295 ACAGAAACAAAATAAAGAAATGGGCC 59.290 34.615 0.00 0.00 0.00 5.80
102 103 5.931724 AGAAACAAAATAAAGAAATGGGCCG 59.068 36.000 0.00 0.00 0.00 6.13
103 104 4.200838 ACAAAATAAAGAAATGGGCCGG 57.799 40.909 0.00 0.00 0.00 6.13
104 105 2.935849 CAAAATAAAGAAATGGGCCGGC 59.064 45.455 21.18 21.18 0.00 6.13
105 106 1.119684 AATAAAGAAATGGGCCGGCC 58.880 50.000 38.57 38.57 0.00 6.13
118 119 4.641645 CGGCCCAGTGCAGTGGAA 62.642 66.667 37.24 0.00 43.89 3.53
119 120 2.674380 GGCCCAGTGCAGTGGAAG 60.674 66.667 37.24 23.97 43.89 3.46
120 121 2.674380 GCCCAGTGCAGTGGAAGG 60.674 66.667 37.24 23.29 40.44 3.46
121 122 2.034687 CCCAGTGCAGTGGAAGGG 59.965 66.667 37.24 19.93 40.44 3.95
122 123 2.034687 CCAGTGCAGTGGAAGGGG 59.965 66.667 33.30 6.84 40.44 4.79
123 124 2.833913 CCAGTGCAGTGGAAGGGGT 61.834 63.158 33.30 0.00 40.44 4.95
124 125 1.601759 CAGTGCAGTGGAAGGGGTG 60.602 63.158 14.08 0.00 0.00 4.61
125 126 2.078665 AGTGCAGTGGAAGGGGTGT 61.079 57.895 0.00 0.00 0.00 4.16
126 127 1.898574 GTGCAGTGGAAGGGGTGTG 60.899 63.158 0.00 0.00 0.00 3.82
127 128 2.985847 GCAGTGGAAGGGGTGTGC 60.986 66.667 0.00 0.00 0.00 4.57
128 129 2.515398 CAGTGGAAGGGGTGTGCA 59.485 61.111 0.00 0.00 0.00 4.57
129 130 1.898574 CAGTGGAAGGGGTGTGCAC 60.899 63.158 10.75 10.75 37.58 4.57
138 139 3.747976 GGTGTGCACCCGATTGCC 61.748 66.667 15.69 1.49 45.68 4.52
139 140 4.101790 GTGTGCACCCGATTGCCG 62.102 66.667 15.69 0.00 42.25 5.69
140 141 4.321966 TGTGCACCCGATTGCCGA 62.322 61.111 15.69 0.00 42.25 5.54
141 142 3.053291 GTGCACCCGATTGCCGAA 61.053 61.111 5.22 0.00 42.25 4.30
142 143 2.281831 TGCACCCGATTGCCGAAA 60.282 55.556 5.84 0.00 42.25 3.46
143 144 2.178273 GCACCCGATTGCCGAAAC 59.822 61.111 0.00 0.00 41.76 2.78
144 145 2.622011 GCACCCGATTGCCGAAACA 61.622 57.895 0.00 0.00 41.76 2.83
145 146 1.953017 CACCCGATTGCCGAAACAA 59.047 52.632 0.00 0.00 41.76 2.83
146 147 0.386731 CACCCGATTGCCGAAACAAC 60.387 55.000 0.00 0.00 41.76 3.32
147 148 0.536460 ACCCGATTGCCGAAACAACT 60.536 50.000 0.00 0.00 41.76 3.16
148 149 1.270947 ACCCGATTGCCGAAACAACTA 60.271 47.619 0.00 0.00 41.76 2.24
149 150 1.807742 CCCGATTGCCGAAACAACTAA 59.192 47.619 0.00 0.00 41.76 2.24
150 151 2.226912 CCCGATTGCCGAAACAACTAAA 59.773 45.455 0.00 0.00 41.76 1.85
151 152 3.304794 CCCGATTGCCGAAACAACTAAAA 60.305 43.478 0.00 0.00 41.76 1.52
152 153 3.666797 CCGATTGCCGAAACAACTAAAAC 59.333 43.478 0.00 0.00 41.76 2.43
153 154 3.356658 CGATTGCCGAAACAACTAAAACG 59.643 43.478 0.00 0.00 41.76 3.60
154 155 2.759538 TGCCGAAACAACTAAAACGG 57.240 45.000 0.00 0.00 42.63 4.44
155 156 1.334243 TGCCGAAACAACTAAAACGGG 59.666 47.619 0.00 0.00 40.55 5.28
156 157 1.927268 GCCGAAACAACTAAAACGGGC 60.927 52.381 0.00 0.00 40.55 6.13
157 158 1.660896 CCGAAACAACTAAAACGGGCG 60.661 52.381 0.00 0.00 37.28 6.13
158 159 1.401530 GAAACAACTAAAACGGGCGC 58.598 50.000 0.00 0.00 0.00 6.53
159 160 1.002142 GAAACAACTAAAACGGGCGCT 60.002 47.619 7.64 0.00 0.00 5.92
160 161 1.026584 AACAACTAAAACGGGCGCTT 58.973 45.000 7.64 0.00 0.00 4.68
161 162 1.881591 ACAACTAAAACGGGCGCTTA 58.118 45.000 7.64 0.00 0.00 3.09
162 163 2.220313 ACAACTAAAACGGGCGCTTAA 58.780 42.857 7.64 0.00 0.00 1.85
163 164 2.224784 ACAACTAAAACGGGCGCTTAAG 59.775 45.455 7.64 0.00 0.00 1.85
164 165 1.445871 ACTAAAACGGGCGCTTAAGG 58.554 50.000 7.64 0.00 0.00 2.69
165 166 0.098200 CTAAAACGGGCGCTTAAGGC 59.902 55.000 7.64 6.03 37.64 4.35
175 176 1.719709 GCTTAAGGCGCCGTTTAGG 59.280 57.895 22.74 16.15 44.97 2.69
176 177 0.741927 GCTTAAGGCGCCGTTTAGGA 60.742 55.000 22.74 0.00 45.00 2.94
177 178 1.729284 CTTAAGGCGCCGTTTAGGAA 58.271 50.000 22.74 7.31 45.00 3.36
178 179 2.285977 CTTAAGGCGCCGTTTAGGAAT 58.714 47.619 22.74 0.00 45.00 3.01
179 180 2.406596 TAAGGCGCCGTTTAGGAATT 57.593 45.000 22.74 8.72 45.00 2.17
180 181 0.808755 AAGGCGCCGTTTAGGAATTG 59.191 50.000 23.20 0.00 45.00 2.32
181 182 1.226575 GGCGCCGTTTAGGAATTGC 60.227 57.895 12.58 0.00 45.00 3.56
182 183 1.226575 GCGCCGTTTAGGAATTGCC 60.227 57.895 0.00 0.00 45.00 4.52
183 184 1.061887 CGCCGTTTAGGAATTGCCG 59.938 57.895 0.00 0.00 45.00 5.69
184 185 1.641123 CGCCGTTTAGGAATTGCCGT 61.641 55.000 0.00 0.00 45.00 5.68
185 186 0.524414 GCCGTTTAGGAATTGCCGTT 59.476 50.000 0.00 0.00 45.00 4.44
186 187 1.738908 GCCGTTTAGGAATTGCCGTTA 59.261 47.619 0.00 0.00 45.00 3.18
187 188 2.223180 GCCGTTTAGGAATTGCCGTTAG 60.223 50.000 0.00 0.00 45.00 2.34
188 189 2.353579 CCGTTTAGGAATTGCCGTTAGG 59.646 50.000 0.00 0.00 45.00 2.69
189 190 3.264104 CGTTTAGGAATTGCCGTTAGGA 58.736 45.455 0.00 0.00 43.43 2.94
190 191 3.308866 CGTTTAGGAATTGCCGTTAGGAG 59.691 47.826 0.00 0.00 43.43 3.69
191 192 2.614829 TAGGAATTGCCGTTAGGAGC 57.385 50.000 0.00 0.00 43.43 4.70
192 193 0.912486 AGGAATTGCCGTTAGGAGCT 59.088 50.000 0.00 0.00 43.43 4.09
193 194 1.134371 AGGAATTGCCGTTAGGAGCTC 60.134 52.381 4.71 4.71 43.43 4.09
194 195 1.300481 GAATTGCCGTTAGGAGCTCC 58.700 55.000 26.22 26.22 41.02 4.70
195 196 0.107165 AATTGCCGTTAGGAGCTCCC 60.107 55.000 29.54 13.25 41.02 4.30
196 197 2.311688 ATTGCCGTTAGGAGCTCCCG 62.312 60.000 29.54 23.87 41.02 5.14
197 198 4.222847 GCCGTTAGGAGCTCCCGG 62.223 72.222 32.71 32.71 40.06 5.73
198 199 3.537874 CCGTTAGGAGCTCCCGGG 61.538 72.222 30.67 22.24 41.02 5.73
199 200 2.441532 CGTTAGGAGCTCCCGGGA 60.442 66.667 29.54 25.06 40.87 5.14
200 201 2.056223 CGTTAGGAGCTCCCGGGAA 61.056 63.158 29.54 15.23 40.87 3.97
201 202 1.610554 CGTTAGGAGCTCCCGGGAAA 61.611 60.000 29.54 12.20 40.87 3.13
202 203 0.178301 GTTAGGAGCTCCCGGGAAAG 59.822 60.000 29.54 15.54 40.87 2.62
203 204 1.623542 TTAGGAGCTCCCGGGAAAGC 61.624 60.000 29.54 25.08 40.87 3.51
206 207 2.671682 AGCTCCCGGGAAAGCTTC 59.328 61.111 27.26 11.77 46.49 3.86
207 208 2.224159 AGCTCCCGGGAAAGCTTCA 61.224 57.895 27.26 2.65 46.49 3.02
208 209 1.077429 GCTCCCGGGAAAGCTTCAT 60.077 57.895 26.68 0.00 35.60 2.57
209 210 1.379642 GCTCCCGGGAAAGCTTCATG 61.380 60.000 26.68 10.61 35.60 3.07
210 211 0.749454 CTCCCGGGAAAGCTTCATGG 60.749 60.000 26.68 4.44 0.00 3.66
211 212 1.754234 CCCGGGAAAGCTTCATGGG 60.754 63.158 18.48 5.49 38.67 4.00
212 213 1.000896 CCGGGAAAGCTTCATGGGT 60.001 57.895 0.00 0.00 0.00 4.51
213 214 0.254747 CCGGGAAAGCTTCATGGGTA 59.745 55.000 0.00 0.00 0.00 3.69
214 215 1.668419 CGGGAAAGCTTCATGGGTAG 58.332 55.000 0.00 0.00 0.00 3.18
215 216 1.209504 CGGGAAAGCTTCATGGGTAGA 59.790 52.381 0.00 0.00 0.00 2.59
216 217 2.158755 CGGGAAAGCTTCATGGGTAGAT 60.159 50.000 0.00 0.00 0.00 1.98
217 218 3.071023 CGGGAAAGCTTCATGGGTAGATA 59.929 47.826 0.00 0.00 0.00 1.98
218 219 4.444306 CGGGAAAGCTTCATGGGTAGATAA 60.444 45.833 0.00 0.00 0.00 1.75
219 220 5.445964 GGGAAAGCTTCATGGGTAGATAAA 58.554 41.667 0.00 0.00 0.00 1.40
220 221 5.891551 GGGAAAGCTTCATGGGTAGATAAAA 59.108 40.000 0.00 0.00 0.00 1.52
221 222 6.379988 GGGAAAGCTTCATGGGTAGATAAAAA 59.620 38.462 0.00 0.00 0.00 1.94
222 223 7.416777 GGGAAAGCTTCATGGGTAGATAAAAAG 60.417 40.741 0.00 0.00 0.00 2.27
223 224 7.410120 AAAGCTTCATGGGTAGATAAAAAGG 57.590 36.000 0.00 0.00 0.00 3.11
224 225 4.889995 AGCTTCATGGGTAGATAAAAAGGC 59.110 41.667 0.00 0.00 0.00 4.35
225 226 4.889995 GCTTCATGGGTAGATAAAAAGGCT 59.110 41.667 0.00 0.00 0.00 4.58
226 227 5.221126 GCTTCATGGGTAGATAAAAAGGCTG 60.221 44.000 0.00 0.00 0.00 4.85
227 228 4.792068 TCATGGGTAGATAAAAAGGCTGG 58.208 43.478 0.00 0.00 0.00 4.85
228 229 3.662759 TGGGTAGATAAAAAGGCTGGG 57.337 47.619 0.00 0.00 0.00 4.45
229 230 3.194620 TGGGTAGATAAAAAGGCTGGGA 58.805 45.455 0.00 0.00 0.00 4.37
230 231 3.594232 TGGGTAGATAAAAAGGCTGGGAA 59.406 43.478 0.00 0.00 0.00 3.97
231 232 4.044825 TGGGTAGATAAAAAGGCTGGGAAA 59.955 41.667 0.00 0.00 0.00 3.13
232 233 4.645136 GGGTAGATAAAAAGGCTGGGAAAG 59.355 45.833 0.00 0.00 0.00 2.62
244 245 2.029623 CTGGGAAAGCTTCATGGATGG 58.970 52.381 0.00 0.00 0.00 3.51
245 246 0.749049 GGGAAAGCTTCATGGATGGC 59.251 55.000 0.00 0.00 0.00 4.40
246 247 0.749049 GGAAAGCTTCATGGATGGCC 59.251 55.000 0.00 0.00 0.00 5.36
247 248 1.687368 GGAAAGCTTCATGGATGGCCT 60.687 52.381 3.32 0.00 34.31 5.19
248 249 2.423373 GGAAAGCTTCATGGATGGCCTA 60.423 50.000 3.32 0.00 34.31 3.93
249 250 3.494332 GAAAGCTTCATGGATGGCCTAT 58.506 45.455 3.32 0.00 34.31 2.57
250 251 3.607490 AAGCTTCATGGATGGCCTATT 57.393 42.857 3.32 0.00 34.31 1.73
251 252 2.872732 AGCTTCATGGATGGCCTATTG 58.127 47.619 3.32 0.00 34.31 1.90
252 253 1.891150 GCTTCATGGATGGCCTATTGG 59.109 52.381 3.32 0.00 34.31 3.16
253 254 2.489619 GCTTCATGGATGGCCTATTGGA 60.490 50.000 3.32 0.00 34.57 3.53
254 255 3.418995 CTTCATGGATGGCCTATTGGAG 58.581 50.000 3.32 0.00 34.57 3.86
255 256 2.421725 TCATGGATGGCCTATTGGAGT 58.578 47.619 3.32 0.00 34.57 3.85
256 257 2.785269 TCATGGATGGCCTATTGGAGTT 59.215 45.455 3.32 0.00 34.57 3.01
257 258 3.205056 TCATGGATGGCCTATTGGAGTTT 59.795 43.478 3.32 0.00 34.57 2.66
258 259 3.756082 TGGATGGCCTATTGGAGTTTT 57.244 42.857 3.32 0.00 34.57 2.43
259 260 4.059773 TGGATGGCCTATTGGAGTTTTT 57.940 40.909 3.32 0.00 34.57 1.94
280 281 2.746279 TTATGTGGGTGGCTATTGGG 57.254 50.000 0.00 0.00 0.00 4.12
281 282 0.184933 TATGTGGGTGGCTATTGGGC 59.815 55.000 0.00 0.00 41.27 5.36
282 283 1.583784 ATGTGGGTGGCTATTGGGCT 61.584 55.000 0.00 0.00 41.48 5.19
283 284 1.000359 GTGGGTGGCTATTGGGCTT 60.000 57.895 0.00 0.00 41.48 4.35
284 285 0.257616 GTGGGTGGCTATTGGGCTTA 59.742 55.000 0.00 0.00 41.48 3.09
285 286 0.550914 TGGGTGGCTATTGGGCTTAG 59.449 55.000 0.00 0.00 41.48 2.18
286 287 0.823769 GGGTGGCTATTGGGCTTAGC 60.824 60.000 0.00 0.00 41.08 3.09
287 288 0.183731 GGTGGCTATTGGGCTTAGCT 59.816 55.000 3.59 0.00 41.45 3.32
288 289 1.410224 GGTGGCTATTGGGCTTAGCTT 60.410 52.381 3.59 0.00 41.45 3.74
289 290 2.379005 GTGGCTATTGGGCTTAGCTTT 58.621 47.619 3.59 0.00 41.45 3.51
290 291 2.760650 GTGGCTATTGGGCTTAGCTTTT 59.239 45.455 3.59 0.00 41.45 2.27
291 292 3.195610 GTGGCTATTGGGCTTAGCTTTTT 59.804 43.478 3.59 0.00 41.45 1.94
292 293 3.447229 TGGCTATTGGGCTTAGCTTTTTC 59.553 43.478 3.59 0.00 41.45 2.29
293 294 3.701542 GGCTATTGGGCTTAGCTTTTTCT 59.298 43.478 3.59 0.00 41.45 2.52
294 295 4.160439 GGCTATTGGGCTTAGCTTTTTCTT 59.840 41.667 3.59 0.00 41.45 2.52
295 296 5.359860 GGCTATTGGGCTTAGCTTTTTCTTA 59.640 40.000 3.59 0.00 41.45 2.10
296 297 6.127451 GGCTATTGGGCTTAGCTTTTTCTTAA 60.127 38.462 3.59 0.00 41.45 1.85
297 298 7.417911 GGCTATTGGGCTTAGCTTTTTCTTAAT 60.418 37.037 3.59 0.00 41.45 1.40
298 299 7.981789 GCTATTGGGCTTAGCTTTTTCTTAATT 59.018 33.333 3.59 0.00 39.18 1.40
299 300 9.875691 CTATTGGGCTTAGCTTTTTCTTAATTT 57.124 29.630 3.59 0.00 0.00 1.82
301 302 9.875691 ATTGGGCTTAGCTTTTTCTTAATTTAG 57.124 29.630 3.59 0.00 0.00 1.85
302 303 7.836842 TGGGCTTAGCTTTTTCTTAATTTAGG 58.163 34.615 3.59 0.00 0.00 2.69
303 304 6.757010 GGGCTTAGCTTTTTCTTAATTTAGGC 59.243 38.462 3.59 0.00 0.00 3.93
304 305 7.363880 GGGCTTAGCTTTTTCTTAATTTAGGCT 60.364 37.037 3.59 0.00 0.00 4.58
305 306 8.035394 GGCTTAGCTTTTTCTTAATTTAGGCTT 58.965 33.333 3.59 0.00 0.00 4.35
316 317 9.974980 TTCTTAATTTAGGCTTAGTTTTGTTGG 57.025 29.630 0.00 0.00 0.00 3.77
317 318 8.085909 TCTTAATTTAGGCTTAGTTTTGTTGGC 58.914 33.333 0.00 0.00 0.00 4.52
318 319 3.907894 TTAGGCTTAGTTTTGTTGGCG 57.092 42.857 0.00 0.00 0.00 5.69
319 320 1.687563 AGGCTTAGTTTTGTTGGCGT 58.312 45.000 0.00 0.00 0.00 5.68
320 321 1.336755 AGGCTTAGTTTTGTTGGCGTG 59.663 47.619 0.00 0.00 0.00 5.34
321 322 1.066454 GGCTTAGTTTTGTTGGCGTGT 59.934 47.619 0.00 0.00 0.00 4.49
322 323 2.291190 GGCTTAGTTTTGTTGGCGTGTA 59.709 45.455 0.00 0.00 0.00 2.90
323 324 3.294102 GCTTAGTTTTGTTGGCGTGTAC 58.706 45.455 0.00 0.00 0.00 2.90
324 325 3.242804 GCTTAGTTTTGTTGGCGTGTACA 60.243 43.478 0.00 0.00 0.00 2.90
325 326 4.555906 GCTTAGTTTTGTTGGCGTGTACAT 60.556 41.667 0.00 0.00 0.00 2.29
326 327 5.334260 GCTTAGTTTTGTTGGCGTGTACATA 60.334 40.000 0.00 0.00 0.00 2.29
327 328 6.615264 TTAGTTTTGTTGGCGTGTACATAA 57.385 33.333 0.00 0.00 0.00 1.90
328 329 5.699097 AGTTTTGTTGGCGTGTACATAAT 57.301 34.783 0.00 0.00 0.00 1.28
329 330 6.804770 AGTTTTGTTGGCGTGTACATAATA 57.195 33.333 0.00 0.00 0.00 0.98
330 331 7.385778 AGTTTTGTTGGCGTGTACATAATAT 57.614 32.000 0.00 0.00 0.00 1.28
331 332 7.822658 AGTTTTGTTGGCGTGTACATAATATT 58.177 30.769 0.00 0.00 0.00 1.28
332 333 7.966204 AGTTTTGTTGGCGTGTACATAATATTC 59.034 33.333 0.00 0.00 0.00 1.75
333 334 5.644902 TGTTGGCGTGTACATAATATTCG 57.355 39.130 0.00 0.00 0.00 3.34
334 335 4.508492 TGTTGGCGTGTACATAATATTCGG 59.492 41.667 0.00 0.00 0.00 4.30
335 336 4.325028 TGGCGTGTACATAATATTCGGT 57.675 40.909 0.00 0.00 0.00 4.69
336 337 4.695396 TGGCGTGTACATAATATTCGGTT 58.305 39.130 0.00 0.00 0.00 4.44
337 338 5.840715 TGGCGTGTACATAATATTCGGTTA 58.159 37.500 0.00 0.00 0.00 2.85
338 339 6.279123 TGGCGTGTACATAATATTCGGTTAA 58.721 36.000 0.00 0.00 0.00 2.01
339 340 6.930164 TGGCGTGTACATAATATTCGGTTAAT 59.070 34.615 0.00 0.00 0.00 1.40
340 341 7.441760 TGGCGTGTACATAATATTCGGTTAATT 59.558 33.333 0.00 0.00 0.00 1.40
341 342 7.953710 GGCGTGTACATAATATTCGGTTAATTC 59.046 37.037 0.00 0.00 0.00 2.17
342 343 7.681246 GCGTGTACATAATATTCGGTTAATTCG 59.319 37.037 0.00 0.00 0.00 3.34
343 344 8.157813 CGTGTACATAATATTCGGTTAATTCGG 58.842 37.037 0.00 0.00 0.00 4.30
344 345 8.981647 GTGTACATAATATTCGGTTAATTCGGT 58.018 33.333 0.00 0.00 0.00 4.69
345 346 8.980610 TGTACATAATATTCGGTTAATTCGGTG 58.019 33.333 0.00 0.00 0.00 4.94
346 347 8.981647 GTACATAATATTCGGTTAATTCGGTGT 58.018 33.333 0.00 0.00 0.00 4.16
348 349 8.981647 ACATAATATTCGGTTAATTCGGTGTAC 58.018 33.333 0.00 0.00 0.00 2.90
349 350 6.849588 AATATTCGGTTAATTCGGTGTACC 57.150 37.500 0.00 0.00 0.00 3.34
359 360 4.814294 GGTGTACCGAGCTGGCCG 62.814 72.222 0.00 0.00 43.94 6.13
360 361 3.755628 GTGTACCGAGCTGGCCGA 61.756 66.667 0.00 0.00 43.94 5.54
361 362 2.992689 TGTACCGAGCTGGCCGAA 60.993 61.111 0.00 0.00 43.94 4.30
362 363 2.263540 GTACCGAGCTGGCCGAAA 59.736 61.111 0.00 0.00 43.94 3.46
363 364 1.153429 GTACCGAGCTGGCCGAAAT 60.153 57.895 0.00 0.00 43.94 2.17
364 365 1.143183 TACCGAGCTGGCCGAAATC 59.857 57.895 0.00 0.00 43.94 2.17
365 366 1.609635 TACCGAGCTGGCCGAAATCA 61.610 55.000 0.00 0.00 43.94 2.57
366 367 1.524621 CCGAGCTGGCCGAAATCAT 60.525 57.895 0.00 0.00 0.00 2.45
367 368 1.502163 CCGAGCTGGCCGAAATCATC 61.502 60.000 0.00 0.00 0.00 2.92
381 382 4.662145 GAAATCATCGAAGCAATTTCCGT 58.338 39.130 11.23 0.00 33.85 4.69
382 383 4.701956 AATCATCGAAGCAATTTCCGTT 57.298 36.364 0.00 0.00 31.82 4.44
383 384 4.701956 ATCATCGAAGCAATTTCCGTTT 57.298 36.364 0.00 0.00 31.82 3.60
384 385 4.497473 TCATCGAAGCAATTTCCGTTTT 57.503 36.364 0.00 0.00 31.82 2.43
385 386 4.865776 TCATCGAAGCAATTTCCGTTTTT 58.134 34.783 0.00 0.00 31.82 1.94
386 387 4.679197 TCATCGAAGCAATTTCCGTTTTTG 59.321 37.500 0.00 0.00 31.82 2.44
387 388 4.294416 TCGAAGCAATTTCCGTTTTTGA 57.706 36.364 0.00 0.00 31.82 2.69
388 389 4.865776 TCGAAGCAATTTCCGTTTTTGAT 58.134 34.783 0.00 0.00 31.82 2.57
389 390 4.679197 TCGAAGCAATTTCCGTTTTTGATG 59.321 37.500 0.00 0.00 31.82 3.07
390 391 4.444056 CGAAGCAATTTCCGTTTTTGATGT 59.556 37.500 0.00 0.00 31.82 3.06
391 392 5.051106 CGAAGCAATTTCCGTTTTTGATGTT 60.051 36.000 0.00 0.00 31.82 2.71
392 393 6.509358 CGAAGCAATTTCCGTTTTTGATGTTT 60.509 34.615 0.00 0.00 31.82 2.83
393 394 6.046885 AGCAATTTCCGTTTTTGATGTTTG 57.953 33.333 0.00 0.00 0.00 2.93
394 395 4.670175 GCAATTTCCGTTTTTGATGTTTGC 59.330 37.500 0.00 0.00 0.00 3.68
395 396 5.503846 GCAATTTCCGTTTTTGATGTTTGCT 60.504 36.000 0.00 0.00 34.47 3.91
396 397 6.292596 GCAATTTCCGTTTTTGATGTTTGCTA 60.293 34.615 0.00 0.00 34.47 3.49
397 398 7.625553 CAATTTCCGTTTTTGATGTTTGCTAA 58.374 30.769 0.00 0.00 0.00 3.09
398 399 6.576551 TTTCCGTTTTTGATGTTTGCTAAC 57.423 33.333 3.93 3.93 34.75 2.34
399 400 4.612943 TCCGTTTTTGATGTTTGCTAACC 58.387 39.130 8.56 0.00 33.15 2.85
400 401 3.423867 CCGTTTTTGATGTTTGCTAACCG 59.576 43.478 8.56 2.42 33.15 4.44
401 402 4.283678 CGTTTTTGATGTTTGCTAACCGA 58.716 39.130 8.56 0.00 33.15 4.69
402 403 4.378616 CGTTTTTGATGTTTGCTAACCGAG 59.621 41.667 8.56 0.00 33.15 4.63
412 413 2.159181 CTAACCGAGCAAACCACCG 58.841 57.895 0.00 0.00 0.00 4.94
413 414 1.296056 CTAACCGAGCAAACCACCGG 61.296 60.000 0.00 0.00 46.65 5.28
414 415 1.756408 TAACCGAGCAAACCACCGGA 61.756 55.000 9.46 0.00 44.29 5.14
415 416 2.046314 CCGAGCAAACCACCGGAT 60.046 61.111 9.46 0.00 44.29 4.18
416 417 1.219664 CCGAGCAAACCACCGGATA 59.780 57.895 9.46 0.00 44.29 2.59
417 418 0.179056 CCGAGCAAACCACCGGATAT 60.179 55.000 9.46 0.00 44.29 1.63
418 419 1.663695 CGAGCAAACCACCGGATATT 58.336 50.000 9.46 0.00 0.00 1.28
419 420 1.597663 CGAGCAAACCACCGGATATTC 59.402 52.381 9.46 0.00 0.00 1.75
420 421 1.947456 GAGCAAACCACCGGATATTCC 59.053 52.381 9.46 0.00 0.00 3.01
476 477 5.612725 TTTTGGCTTTGGTCTTTGATTCT 57.387 34.783 0.00 0.00 0.00 2.40
477 478 4.853924 TTGGCTTTGGTCTTTGATTCTC 57.146 40.909 0.00 0.00 0.00 2.87
478 479 2.813754 TGGCTTTGGTCTTTGATTCTCG 59.186 45.455 0.00 0.00 0.00 4.04
479 480 2.162408 GGCTTTGGTCTTTGATTCTCGG 59.838 50.000 0.00 0.00 0.00 4.63
480 481 2.814336 GCTTTGGTCTTTGATTCTCGGT 59.186 45.455 0.00 0.00 0.00 4.69
481 482 3.253432 GCTTTGGTCTTTGATTCTCGGTT 59.747 43.478 0.00 0.00 0.00 4.44
482 483 4.261614 GCTTTGGTCTTTGATTCTCGGTTT 60.262 41.667 0.00 0.00 0.00 3.27
483 484 5.736207 GCTTTGGTCTTTGATTCTCGGTTTT 60.736 40.000 0.00 0.00 0.00 2.43
484 485 5.845391 TTGGTCTTTGATTCTCGGTTTTT 57.155 34.783 0.00 0.00 0.00 1.94
501 502 2.525105 TTTTGCCCAACCCTATCCTC 57.475 50.000 0.00 0.00 0.00 3.71
502 503 0.629058 TTTGCCCAACCCTATCCTCC 59.371 55.000 0.00 0.00 0.00 4.30
503 504 0.253630 TTGCCCAACCCTATCCTCCT 60.254 55.000 0.00 0.00 0.00 3.69
504 505 0.694444 TGCCCAACCCTATCCTCCTC 60.694 60.000 0.00 0.00 0.00 3.71
505 506 0.400670 GCCCAACCCTATCCTCCTCT 60.401 60.000 0.00 0.00 0.00 3.69
506 507 1.428869 CCCAACCCTATCCTCCTCTG 58.571 60.000 0.00 0.00 0.00 3.35
507 508 0.761802 CCAACCCTATCCTCCTCTGC 59.238 60.000 0.00 0.00 0.00 4.26
508 509 0.761802 CAACCCTATCCTCCTCTGCC 59.238 60.000 0.00 0.00 0.00 4.85
509 510 0.644937 AACCCTATCCTCCTCTGCCT 59.355 55.000 0.00 0.00 0.00 4.75
510 511 0.644937 ACCCTATCCTCCTCTGCCTT 59.355 55.000 0.00 0.00 0.00 4.35
511 512 1.347062 CCCTATCCTCCTCTGCCTTC 58.653 60.000 0.00 0.00 0.00 3.46
512 513 1.347062 CCTATCCTCCTCTGCCTTCC 58.653 60.000 0.00 0.00 0.00 3.46
513 514 1.347062 CTATCCTCCTCTGCCTTCCC 58.653 60.000 0.00 0.00 0.00 3.97
514 515 0.642156 TATCCTCCTCTGCCTTCCCA 59.358 55.000 0.00 0.00 0.00 4.37
515 516 0.985490 ATCCTCCTCTGCCTTCCCAC 60.985 60.000 0.00 0.00 0.00 4.61
516 517 1.920325 CCTCCTCTGCCTTCCCACA 60.920 63.158 0.00 0.00 0.00 4.17
517 518 1.298014 CTCCTCTGCCTTCCCACAC 59.702 63.158 0.00 0.00 0.00 3.82
518 519 1.461268 TCCTCTGCCTTCCCACACA 60.461 57.895 0.00 0.00 0.00 3.72
519 520 1.302832 CCTCTGCCTTCCCACACAC 60.303 63.158 0.00 0.00 0.00 3.82
520 521 1.451504 CTCTGCCTTCCCACACACA 59.548 57.895 0.00 0.00 0.00 3.72
521 522 0.037303 CTCTGCCTTCCCACACACAT 59.963 55.000 0.00 0.00 0.00 3.21
522 523 0.250858 TCTGCCTTCCCACACACATG 60.251 55.000 0.00 0.00 0.00 3.21
523 524 0.250858 CTGCCTTCCCACACACATGA 60.251 55.000 0.00 0.00 0.00 3.07
524 525 0.405198 TGCCTTCCCACACACATGAT 59.595 50.000 0.00 0.00 0.00 2.45
525 526 1.098050 GCCTTCCCACACACATGATC 58.902 55.000 0.00 0.00 0.00 2.92
526 527 1.340405 GCCTTCCCACACACATGATCT 60.340 52.381 0.00 0.00 0.00 2.75
527 528 2.636830 CCTTCCCACACACATGATCTC 58.363 52.381 0.00 0.00 0.00 2.75
528 529 2.636830 CTTCCCACACACATGATCTCC 58.363 52.381 0.00 0.00 0.00 3.71
529 530 0.911769 TCCCACACACATGATCTCCC 59.088 55.000 0.00 0.00 0.00 4.30
530 531 0.914644 CCCACACACATGATCTCCCT 59.085 55.000 0.00 0.00 0.00 4.20
531 532 1.134280 CCCACACACATGATCTCCCTC 60.134 57.143 0.00 0.00 0.00 4.30
532 533 1.134280 CCACACACATGATCTCCCTCC 60.134 57.143 0.00 0.00 0.00 4.30
533 534 0.826715 ACACACATGATCTCCCTCCG 59.173 55.000 0.00 0.00 0.00 4.63
534 535 0.826715 CACACATGATCTCCCTCCGT 59.173 55.000 0.00 0.00 0.00 4.69
535 536 1.115467 ACACATGATCTCCCTCCGTC 58.885 55.000 0.00 0.00 0.00 4.79
536 537 0.031314 CACATGATCTCCCTCCGTCG 59.969 60.000 0.00 0.00 0.00 5.12
537 538 0.395862 ACATGATCTCCCTCCGTCGT 60.396 55.000 0.00 0.00 0.00 4.34
538 539 0.031314 CATGATCTCCCTCCGTCGTG 59.969 60.000 0.00 0.00 0.00 4.35
539 540 1.739338 ATGATCTCCCTCCGTCGTGC 61.739 60.000 0.00 0.00 0.00 5.34
540 541 3.140225 GATCTCCCTCCGTCGTGCC 62.140 68.421 0.00 0.00 0.00 5.01
541 542 3.663815 ATCTCCCTCCGTCGTGCCT 62.664 63.158 0.00 0.00 0.00 4.75
542 543 3.827898 CTCCCTCCGTCGTGCCTC 61.828 72.222 0.00 0.00 0.00 4.70
545 546 2.439701 CCTCCGTCGTGCCTCCTA 60.440 66.667 0.00 0.00 0.00 2.94
546 547 1.828660 CCTCCGTCGTGCCTCCTAT 60.829 63.158 0.00 0.00 0.00 2.57
547 548 1.360551 CTCCGTCGTGCCTCCTATG 59.639 63.158 0.00 0.00 0.00 2.23
548 549 2.279517 CCGTCGTGCCTCCTATGC 60.280 66.667 0.00 0.00 0.00 3.14
549 550 2.279517 CGTCGTGCCTCCTATGCC 60.280 66.667 0.00 0.00 0.00 4.40
550 551 2.786495 CGTCGTGCCTCCTATGCCT 61.786 63.158 0.00 0.00 0.00 4.75
551 552 1.068250 GTCGTGCCTCCTATGCCTC 59.932 63.158 0.00 0.00 0.00 4.70
552 553 1.381191 TCGTGCCTCCTATGCCTCA 60.381 57.895 0.00 0.00 0.00 3.86
553 554 0.760567 TCGTGCCTCCTATGCCTCAT 60.761 55.000 0.00 0.00 0.00 2.90
554 555 0.107456 CGTGCCTCCTATGCCTCATT 59.893 55.000 0.00 0.00 0.00 2.57
555 556 1.875576 CGTGCCTCCTATGCCTCATTC 60.876 57.143 0.00 0.00 0.00 2.67
556 557 0.394192 TGCCTCCTATGCCTCATTCG 59.606 55.000 0.00 0.00 0.00 3.34
557 558 0.394565 GCCTCCTATGCCTCATTCGT 59.605 55.000 0.00 0.00 0.00 3.85
558 559 1.875576 GCCTCCTATGCCTCATTCGTG 60.876 57.143 0.00 0.00 0.00 4.35
559 560 1.506493 CTCCTATGCCTCATTCGTGC 58.494 55.000 0.00 0.00 0.00 5.34
560 561 0.106708 TCCTATGCCTCATTCGTGCC 59.893 55.000 0.00 0.00 0.00 5.01
561 562 0.107456 CCTATGCCTCATTCGTGCCT 59.893 55.000 0.00 0.00 0.00 4.75
562 563 1.506493 CTATGCCTCATTCGTGCCTC 58.494 55.000 0.00 0.00 0.00 4.70
563 564 0.106708 TATGCCTCATTCGTGCCTCC 59.893 55.000 0.00 0.00 0.00 4.30
564 565 1.913951 ATGCCTCATTCGTGCCTCCA 61.914 55.000 0.00 0.00 0.00 3.86
565 566 1.377202 GCCTCATTCGTGCCTCCAA 60.377 57.895 0.00 0.00 0.00 3.53
566 567 1.372087 GCCTCATTCGTGCCTCCAAG 61.372 60.000 0.00 0.00 0.00 3.61
567 568 0.745845 CCTCATTCGTGCCTCCAAGG 60.746 60.000 0.00 0.00 38.80 3.61
568 569 0.250234 CTCATTCGTGCCTCCAAGGA 59.750 55.000 0.00 0.00 37.67 3.36
569 570 0.036388 TCATTCGTGCCTCCAAGGAC 60.036 55.000 0.00 0.00 37.67 3.85
570 571 0.321564 CATTCGTGCCTCCAAGGACA 60.322 55.000 0.00 0.00 37.67 4.02
571 572 0.400213 ATTCGTGCCTCCAAGGACAA 59.600 50.000 0.00 0.00 37.67 3.18
572 573 0.400213 TTCGTGCCTCCAAGGACAAT 59.600 50.000 0.00 0.00 37.67 2.71
573 574 0.321564 TCGTGCCTCCAAGGACAATG 60.322 55.000 0.00 0.00 37.67 2.82
574 575 0.606401 CGTGCCTCCAAGGACAATGT 60.606 55.000 0.00 0.00 37.67 2.71
575 576 1.620822 GTGCCTCCAAGGACAATGTT 58.379 50.000 0.00 0.00 37.67 2.71
576 577 1.270550 GTGCCTCCAAGGACAATGTTG 59.729 52.381 0.00 0.00 37.67 3.33
577 578 1.144708 TGCCTCCAAGGACAATGTTGA 59.855 47.619 0.00 0.00 37.67 3.18
578 579 1.541588 GCCTCCAAGGACAATGTTGAC 59.458 52.381 0.00 0.00 37.67 3.18
579 580 2.862541 CCTCCAAGGACAATGTTGACA 58.137 47.619 0.00 0.00 37.67 3.58
580 581 3.424703 CCTCCAAGGACAATGTTGACAT 58.575 45.455 0.00 0.00 37.67 3.06
581 582 3.441572 CCTCCAAGGACAATGTTGACATC 59.558 47.826 0.00 0.00 37.67 3.06
582 583 4.074259 CTCCAAGGACAATGTTGACATCA 58.926 43.478 0.00 0.00 35.10 3.07
583 584 4.074259 TCCAAGGACAATGTTGACATCAG 58.926 43.478 0.00 0.00 35.10 2.90
584 585 3.822735 CCAAGGACAATGTTGACATCAGT 59.177 43.478 0.00 0.04 35.10 3.41
585 586 4.083110 CCAAGGACAATGTTGACATCAGTC 60.083 45.833 15.58 15.58 45.19 3.51
618 619 0.033306 TGGCAAATAGCTCCCATGCA 60.033 50.000 13.50 0.00 44.79 3.96
958 974 3.120792 CGTTGTTGTTCTTCTTCTCCGA 58.879 45.455 0.00 0.00 0.00 4.55
961 977 2.059541 GTTGTTCTTCTTCTCCGACGG 58.940 52.381 7.84 7.84 0.00 4.79
1087 1103 1.146930 CCTGCATGCCCACGTATCT 59.853 57.895 16.68 0.00 0.00 1.98
1355 1374 0.324943 CGGATTCAACTGGAGGGTGT 59.675 55.000 0.00 0.00 33.62 4.16
1431 1488 0.749454 GCGTCTGGATCTGCCCATTT 60.749 55.000 0.00 0.00 35.33 2.32
1877 1960 8.420374 TGATAAAATAAGTGTAGCTAGTGCAC 57.580 34.615 9.40 9.40 41.86 4.57
1880 1963 7.504924 AAAATAAGTGTAGCTAGTGCACAAA 57.495 32.000 21.04 5.62 43.87 2.83
1907 1995 1.390123 CACACGGTCATTGACATCGAC 59.610 52.381 18.09 0.01 33.68 4.20
2077 2167 4.514066 ACAAAAGGTTGGTTCTAGTTAGCG 59.486 41.667 0.00 0.00 39.22 4.26
2427 2541 9.603921 AATAAAATGCAATGGAGAAACTAATGG 57.396 29.630 0.00 0.00 0.00 3.16
2428 2542 6.855763 AAATGCAATGGAGAAACTAATGGA 57.144 33.333 0.00 0.00 0.00 3.41
2429 2543 6.461110 AATGCAATGGAGAAACTAATGGAG 57.539 37.500 0.00 0.00 0.00 3.86
2430 2544 5.178096 TGCAATGGAGAAACTAATGGAGA 57.822 39.130 0.00 0.00 0.00 3.71
2431 2545 5.569355 TGCAATGGAGAAACTAATGGAGAA 58.431 37.500 0.00 0.00 0.00 2.87
2432 2546 6.009589 TGCAATGGAGAAACTAATGGAGAAA 58.990 36.000 0.00 0.00 0.00 2.52
2433 2547 6.071952 TGCAATGGAGAAACTAATGGAGAAAC 60.072 38.462 0.00 0.00 0.00 2.78
2434 2548 6.151817 GCAATGGAGAAACTAATGGAGAAACT 59.848 38.462 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.389948 GCGTGGGTGAGATTCGAACT 60.390 55.000 0.00 0.00 0.00 3.01
1 2 1.683790 CGCGTGGGTGAGATTCGAAC 61.684 60.000 0.00 0.00 0.00 3.95
2 3 1.445410 CGCGTGGGTGAGATTCGAA 60.445 57.895 0.00 0.00 0.00 3.71
3 4 1.307355 TACGCGTGGGTGAGATTCGA 61.307 55.000 24.59 0.00 0.00 3.71
4 5 0.248907 ATACGCGTGGGTGAGATTCG 60.249 55.000 24.59 0.00 0.00 3.34
5 6 2.607282 CCTATACGCGTGGGTGAGATTC 60.607 54.545 24.59 0.00 0.00 2.52
6 7 1.340248 CCTATACGCGTGGGTGAGATT 59.660 52.381 24.59 0.00 0.00 2.40
7 8 0.959553 CCTATACGCGTGGGTGAGAT 59.040 55.000 24.59 7.93 0.00 2.75
8 9 1.105167 CCCTATACGCGTGGGTGAGA 61.105 60.000 24.59 0.00 36.32 3.27
9 10 1.362717 CCCTATACGCGTGGGTGAG 59.637 63.158 24.59 11.04 36.32 3.51
10 11 3.528853 CCCTATACGCGTGGGTGA 58.471 61.111 24.59 0.13 36.32 4.02
13 14 1.741528 AAAAACCCTATACGCGTGGG 58.258 50.000 26.75 26.75 46.07 4.61
74 75 8.620416 GCCCATTTCTTTATTTTGTTTCTGTTT 58.380 29.630 0.00 0.00 0.00 2.83
75 76 7.228507 GGCCCATTTCTTTATTTTGTTTCTGTT 59.771 33.333 0.00 0.00 0.00 3.16
76 77 6.710295 GGCCCATTTCTTTATTTTGTTTCTGT 59.290 34.615 0.00 0.00 0.00 3.41
77 78 6.128580 CGGCCCATTTCTTTATTTTGTTTCTG 60.129 38.462 0.00 0.00 0.00 3.02
78 79 5.931724 CGGCCCATTTCTTTATTTTGTTTCT 59.068 36.000 0.00 0.00 0.00 2.52
79 80 5.121611 CCGGCCCATTTCTTTATTTTGTTTC 59.878 40.000 0.00 0.00 0.00 2.78
80 81 5.000591 CCGGCCCATTTCTTTATTTTGTTT 58.999 37.500 0.00 0.00 0.00 2.83
81 82 4.574892 CCGGCCCATTTCTTTATTTTGTT 58.425 39.130 0.00 0.00 0.00 2.83
82 83 3.618752 GCCGGCCCATTTCTTTATTTTGT 60.619 43.478 18.11 0.00 0.00 2.83
83 84 2.935849 GCCGGCCCATTTCTTTATTTTG 59.064 45.455 18.11 0.00 0.00 2.44
84 85 2.093181 GGCCGGCCCATTTCTTTATTTT 60.093 45.455 36.64 0.00 0.00 1.82
85 86 1.484653 GGCCGGCCCATTTCTTTATTT 59.515 47.619 36.64 0.00 0.00 1.40
86 87 1.119684 GGCCGGCCCATTTCTTTATT 58.880 50.000 36.64 0.00 0.00 1.40
87 88 2.820845 GGCCGGCCCATTTCTTTAT 58.179 52.632 36.64 0.00 0.00 1.40
88 89 4.347865 GGCCGGCCCATTTCTTTA 57.652 55.556 36.64 0.00 0.00 1.85
101 102 4.641645 TTCCACTGCACTGGGCCG 62.642 66.667 11.90 0.00 43.89 6.13
102 103 2.674380 CTTCCACTGCACTGGGCC 60.674 66.667 11.90 0.00 43.89 5.80
103 104 2.674380 CCTTCCACTGCACTGGGC 60.674 66.667 11.90 0.00 45.13 5.36
104 105 2.034687 CCCTTCCACTGCACTGGG 59.965 66.667 11.90 0.13 31.41 4.45
105 106 2.034687 CCCCTTCCACTGCACTGG 59.965 66.667 6.06 6.06 0.00 4.00
106 107 1.601759 CACCCCTTCCACTGCACTG 60.602 63.158 0.00 0.00 0.00 3.66
107 108 2.078665 ACACCCCTTCCACTGCACT 61.079 57.895 0.00 0.00 0.00 4.40
108 109 1.898574 CACACCCCTTCCACTGCAC 60.899 63.158 0.00 0.00 0.00 4.57
109 110 2.515398 CACACCCCTTCCACTGCA 59.485 61.111 0.00 0.00 0.00 4.41
110 111 2.985847 GCACACCCCTTCCACTGC 60.986 66.667 0.00 0.00 0.00 4.40
111 112 1.898574 GTGCACACCCCTTCCACTG 60.899 63.158 13.17 0.00 0.00 3.66
112 113 2.515901 GTGCACACCCCTTCCACT 59.484 61.111 13.17 0.00 0.00 4.00
113 114 2.597510 GGTGCACACCCCTTCCAC 60.598 66.667 20.43 0.00 45.68 4.02
122 123 4.101790 CGGCAATCGGGTGCACAC 62.102 66.667 20.43 15.50 46.81 3.82
123 124 3.834013 TTCGGCAATCGGGTGCACA 62.834 57.895 20.43 0.00 46.81 4.57
124 125 2.622011 TTTCGGCAATCGGGTGCAC 61.622 57.895 8.80 8.80 46.81 4.57
125 126 2.281831 TTTCGGCAATCGGGTGCA 60.282 55.556 12.34 0.00 46.81 4.57
126 127 2.136196 TTGTTTCGGCAATCGGGTGC 62.136 55.000 2.96 2.96 44.14 5.01
127 128 0.386731 GTTGTTTCGGCAATCGGGTG 60.387 55.000 0.00 0.00 39.77 4.61
128 129 0.536460 AGTTGTTTCGGCAATCGGGT 60.536 50.000 0.00 0.00 39.77 5.28
129 130 1.444836 TAGTTGTTTCGGCAATCGGG 58.555 50.000 0.00 0.00 39.77 5.14
130 131 3.546002 TTTAGTTGTTTCGGCAATCGG 57.454 42.857 0.00 0.00 39.77 4.18
131 132 3.356658 CGTTTTAGTTGTTTCGGCAATCG 59.643 43.478 0.00 0.00 40.90 3.34
132 133 3.666797 CCGTTTTAGTTGTTTCGGCAATC 59.333 43.478 0.00 0.00 0.00 2.67
133 134 3.551250 CCCGTTTTAGTTGTTTCGGCAAT 60.551 43.478 0.00 0.00 37.17 3.56
134 135 2.223525 CCCGTTTTAGTTGTTTCGGCAA 60.224 45.455 0.00 0.00 37.17 4.52
135 136 1.334243 CCCGTTTTAGTTGTTTCGGCA 59.666 47.619 0.00 0.00 37.17 5.69
136 137 1.927268 GCCCGTTTTAGTTGTTTCGGC 60.927 52.381 0.00 0.00 37.17 5.54
137 138 1.660896 CGCCCGTTTTAGTTGTTTCGG 60.661 52.381 0.00 0.00 38.05 4.30
138 139 1.665766 CGCCCGTTTTAGTTGTTTCG 58.334 50.000 0.00 0.00 0.00 3.46
139 140 1.002142 AGCGCCCGTTTTAGTTGTTTC 60.002 47.619 2.29 0.00 0.00 2.78
140 141 1.026584 AGCGCCCGTTTTAGTTGTTT 58.973 45.000 2.29 0.00 0.00 2.83
141 142 1.026584 AAGCGCCCGTTTTAGTTGTT 58.973 45.000 2.29 0.00 0.00 2.83
142 143 1.881591 TAAGCGCCCGTTTTAGTTGT 58.118 45.000 2.29 0.00 0.00 3.32
143 144 2.413634 CCTTAAGCGCCCGTTTTAGTTG 60.414 50.000 2.29 0.00 0.00 3.16
144 145 1.808343 CCTTAAGCGCCCGTTTTAGTT 59.192 47.619 2.29 0.00 0.00 2.24
145 146 1.445871 CCTTAAGCGCCCGTTTTAGT 58.554 50.000 2.29 0.00 0.00 2.24
146 147 0.098200 GCCTTAAGCGCCCGTTTTAG 59.902 55.000 2.29 0.00 0.00 1.85
147 148 2.173433 GCCTTAAGCGCCCGTTTTA 58.827 52.632 2.29 0.00 0.00 1.52
148 149 2.959372 GCCTTAAGCGCCCGTTTT 59.041 55.556 2.29 0.00 0.00 2.43
157 158 0.741927 TCCTAAACGGCGCCTTAAGC 60.742 55.000 26.68 0.00 38.52 3.09
158 159 1.729284 TTCCTAAACGGCGCCTTAAG 58.271 50.000 26.68 15.88 0.00 1.85
159 160 2.406596 ATTCCTAAACGGCGCCTTAA 57.593 45.000 26.68 6.16 0.00 1.85
160 161 2.011222 CAATTCCTAAACGGCGCCTTA 58.989 47.619 26.68 16.18 0.00 2.69
161 162 0.808755 CAATTCCTAAACGGCGCCTT 59.191 50.000 26.68 13.70 0.00 4.35
162 163 1.654023 GCAATTCCTAAACGGCGCCT 61.654 55.000 26.68 8.66 0.00 5.52
163 164 1.226575 GCAATTCCTAAACGGCGCC 60.227 57.895 19.07 19.07 0.00 6.53
164 165 1.226575 GGCAATTCCTAAACGGCGC 60.227 57.895 6.90 0.00 0.00 6.53
165 166 1.061887 CGGCAATTCCTAAACGGCG 59.938 57.895 4.80 4.80 39.29 6.46
166 167 0.524414 AACGGCAATTCCTAAACGGC 59.476 50.000 0.00 0.00 0.00 5.68
167 168 2.353579 CCTAACGGCAATTCCTAAACGG 59.646 50.000 0.00 0.00 0.00 4.44
168 169 3.264104 TCCTAACGGCAATTCCTAAACG 58.736 45.455 0.00 0.00 0.00 3.60
169 170 3.064958 GCTCCTAACGGCAATTCCTAAAC 59.935 47.826 0.00 0.00 0.00 2.01
170 171 3.054655 AGCTCCTAACGGCAATTCCTAAA 60.055 43.478 0.00 0.00 0.00 1.85
171 172 2.504175 AGCTCCTAACGGCAATTCCTAA 59.496 45.455 0.00 0.00 0.00 2.69
172 173 2.102588 GAGCTCCTAACGGCAATTCCTA 59.897 50.000 0.87 0.00 0.00 2.94
173 174 0.912486 AGCTCCTAACGGCAATTCCT 59.088 50.000 0.00 0.00 0.00 3.36
174 175 1.300481 GAGCTCCTAACGGCAATTCC 58.700 55.000 0.87 0.00 0.00 3.01
175 176 1.300481 GGAGCTCCTAACGGCAATTC 58.700 55.000 26.25 0.00 0.00 2.17
176 177 0.107165 GGGAGCTCCTAACGGCAATT 60.107 55.000 31.36 0.00 35.95 2.32
177 178 1.527370 GGGAGCTCCTAACGGCAAT 59.473 57.895 31.36 0.00 35.95 3.56
178 179 2.987125 GGGAGCTCCTAACGGCAA 59.013 61.111 31.36 0.00 35.95 4.52
179 180 3.458163 CGGGAGCTCCTAACGGCA 61.458 66.667 31.36 0.00 35.95 5.69
180 181 4.222847 CCGGGAGCTCCTAACGGC 62.223 72.222 31.36 13.24 37.93 5.68
181 182 3.537874 CCCGGGAGCTCCTAACGG 61.538 72.222 31.11 31.11 43.89 4.44
182 183 1.610554 TTTCCCGGGAGCTCCTAACG 61.611 60.000 31.36 24.87 35.95 3.18
183 184 0.178301 CTTTCCCGGGAGCTCCTAAC 59.822 60.000 31.36 14.74 35.95 2.34
184 185 1.623542 GCTTTCCCGGGAGCTCCTAA 61.624 60.000 31.36 17.46 36.01 2.69
185 186 2.064581 GCTTTCCCGGGAGCTCCTA 61.065 63.158 31.36 12.59 36.01 2.94
186 187 3.403558 GCTTTCCCGGGAGCTCCT 61.404 66.667 31.36 0.00 36.01 3.69
187 188 3.403558 AGCTTTCCCGGGAGCTCC 61.404 66.667 27.26 25.59 45.68 4.70
190 191 1.077429 ATGAAGCTTTCCCGGGAGC 60.077 57.895 25.26 24.46 39.17 4.70
191 192 0.749454 CCATGAAGCTTTCCCGGGAG 60.749 60.000 25.26 14.84 0.00 4.30
192 193 1.302949 CCATGAAGCTTTCCCGGGA 59.697 57.895 22.63 22.63 0.00 5.14
193 194 1.754234 CCCATGAAGCTTTCCCGGG 60.754 63.158 16.85 16.85 34.85 5.73
194 195 0.254747 TACCCATGAAGCTTTCCCGG 59.745 55.000 0.00 0.00 0.00 5.73
195 196 1.209504 TCTACCCATGAAGCTTTCCCG 59.790 52.381 0.00 0.00 0.00 5.14
196 197 3.584733 ATCTACCCATGAAGCTTTCCC 57.415 47.619 0.00 0.00 0.00 3.97
197 198 7.404671 TTTTTATCTACCCATGAAGCTTTCC 57.595 36.000 0.00 0.00 0.00 3.13
198 199 7.484140 CCTTTTTATCTACCCATGAAGCTTTC 58.516 38.462 0.00 0.00 0.00 2.62
199 200 6.127338 GCCTTTTTATCTACCCATGAAGCTTT 60.127 38.462 0.00 0.00 0.00 3.51
200 201 5.360999 GCCTTTTTATCTACCCATGAAGCTT 59.639 40.000 0.00 0.00 0.00 3.74
201 202 4.889995 GCCTTTTTATCTACCCATGAAGCT 59.110 41.667 0.00 0.00 0.00 3.74
202 203 4.889995 AGCCTTTTTATCTACCCATGAAGC 59.110 41.667 0.00 0.00 0.00 3.86
203 204 5.300286 CCAGCCTTTTTATCTACCCATGAAG 59.700 44.000 0.00 0.00 0.00 3.02
204 205 5.200483 CCAGCCTTTTTATCTACCCATGAA 58.800 41.667 0.00 0.00 0.00 2.57
205 206 4.386312 CCCAGCCTTTTTATCTACCCATGA 60.386 45.833 0.00 0.00 0.00 3.07
206 207 3.891366 CCCAGCCTTTTTATCTACCCATG 59.109 47.826 0.00 0.00 0.00 3.66
207 208 3.791545 TCCCAGCCTTTTTATCTACCCAT 59.208 43.478 0.00 0.00 0.00 4.00
208 209 3.194620 TCCCAGCCTTTTTATCTACCCA 58.805 45.455 0.00 0.00 0.00 4.51
209 210 3.945640 TCCCAGCCTTTTTATCTACCC 57.054 47.619 0.00 0.00 0.00 3.69
210 211 4.098044 GCTTTCCCAGCCTTTTTATCTACC 59.902 45.833 0.00 0.00 43.65 3.18
211 212 5.250235 GCTTTCCCAGCCTTTTTATCTAC 57.750 43.478 0.00 0.00 43.65 2.59
224 225 2.029623 CCATCCATGAAGCTTTCCCAG 58.970 52.381 0.00 0.00 0.00 4.45
225 226 1.961435 GCCATCCATGAAGCTTTCCCA 60.961 52.381 0.00 0.00 0.00 4.37
226 227 0.749049 GCCATCCATGAAGCTTTCCC 59.251 55.000 0.00 0.00 0.00 3.97
227 228 0.749049 GGCCATCCATGAAGCTTTCC 59.251 55.000 0.00 0.00 0.00 3.13
228 229 1.772836 AGGCCATCCATGAAGCTTTC 58.227 50.000 5.01 0.00 33.74 2.62
229 230 3.607490 ATAGGCCATCCATGAAGCTTT 57.393 42.857 5.01 0.00 33.74 3.51
230 231 3.228453 CAATAGGCCATCCATGAAGCTT 58.772 45.455 5.01 0.00 33.74 3.74
231 232 2.490351 CCAATAGGCCATCCATGAAGCT 60.490 50.000 5.01 0.00 33.74 3.74
232 233 1.891150 CCAATAGGCCATCCATGAAGC 59.109 52.381 5.01 0.00 33.74 3.86
233 234 3.181436 ACTCCAATAGGCCATCCATGAAG 60.181 47.826 5.01 0.00 33.74 3.02
234 235 2.785269 ACTCCAATAGGCCATCCATGAA 59.215 45.455 5.01 0.00 33.74 2.57
235 236 2.421725 ACTCCAATAGGCCATCCATGA 58.578 47.619 5.01 0.00 33.74 3.07
236 237 2.965671 ACTCCAATAGGCCATCCATG 57.034 50.000 5.01 0.00 33.74 3.66
237 238 3.979501 AAACTCCAATAGGCCATCCAT 57.020 42.857 5.01 0.00 33.74 3.41
238 239 3.756082 AAAACTCCAATAGGCCATCCA 57.244 42.857 5.01 0.00 33.74 3.41
258 259 3.772025 CCCAATAGCCACCCACATAAAAA 59.228 43.478 0.00 0.00 0.00 1.94
259 260 3.370104 CCCAATAGCCACCCACATAAAA 58.630 45.455 0.00 0.00 0.00 1.52
260 261 2.952702 GCCCAATAGCCACCCACATAAA 60.953 50.000 0.00 0.00 0.00 1.40
261 262 1.410932 GCCCAATAGCCACCCACATAA 60.411 52.381 0.00 0.00 0.00 1.90
262 263 0.184933 GCCCAATAGCCACCCACATA 59.815 55.000 0.00 0.00 0.00 2.29
263 264 1.076044 GCCCAATAGCCACCCACAT 60.076 57.895 0.00 0.00 0.00 3.21
264 265 1.799157 AAGCCCAATAGCCACCCACA 61.799 55.000 0.00 0.00 0.00 4.17
265 266 0.257616 TAAGCCCAATAGCCACCCAC 59.742 55.000 0.00 0.00 0.00 4.61
266 267 0.550914 CTAAGCCCAATAGCCACCCA 59.449 55.000 0.00 0.00 0.00 4.51
267 268 0.823769 GCTAAGCCCAATAGCCACCC 60.824 60.000 0.00 0.00 39.87 4.61
268 269 0.183731 AGCTAAGCCCAATAGCCACC 59.816 55.000 2.15 0.00 45.48 4.61
269 270 2.058593 AAGCTAAGCCCAATAGCCAC 57.941 50.000 2.15 0.00 45.48 5.01
270 271 2.826674 AAAGCTAAGCCCAATAGCCA 57.173 45.000 2.15 0.00 45.48 4.75
271 272 3.701542 AGAAAAAGCTAAGCCCAATAGCC 59.298 43.478 2.15 0.00 45.48 3.93
272 273 4.991153 AGAAAAAGCTAAGCCCAATAGC 57.009 40.909 0.00 0.00 44.85 2.97
273 274 9.875691 AAATTAAGAAAAAGCTAAGCCCAATAG 57.124 29.630 0.00 0.00 0.00 1.73
275 276 9.875691 CTAAATTAAGAAAAAGCTAAGCCCAAT 57.124 29.630 0.00 0.00 0.00 3.16
276 277 8.311109 CCTAAATTAAGAAAAAGCTAAGCCCAA 58.689 33.333 0.00 0.00 0.00 4.12
277 278 7.578763 GCCTAAATTAAGAAAAAGCTAAGCCCA 60.579 37.037 0.00 0.00 0.00 5.36
278 279 6.757010 GCCTAAATTAAGAAAAAGCTAAGCCC 59.243 38.462 0.00 0.00 0.00 5.19
279 280 7.548097 AGCCTAAATTAAGAAAAAGCTAAGCC 58.452 34.615 0.00 0.00 0.00 4.35
280 281 8.988064 AAGCCTAAATTAAGAAAAAGCTAAGC 57.012 30.769 0.00 0.00 0.00 3.09
290 291 9.974980 CCAACAAAACTAAGCCTAAATTAAGAA 57.025 29.630 0.00 0.00 0.00 2.52
291 292 8.085909 GCCAACAAAACTAAGCCTAAATTAAGA 58.914 33.333 0.00 0.00 0.00 2.10
292 293 7.061789 CGCCAACAAAACTAAGCCTAAATTAAG 59.938 37.037 0.00 0.00 0.00 1.85
293 294 6.864165 CGCCAACAAAACTAAGCCTAAATTAA 59.136 34.615 0.00 0.00 0.00 1.40
294 295 6.016108 ACGCCAACAAAACTAAGCCTAAATTA 60.016 34.615 0.00 0.00 0.00 1.40
295 296 5.221362 ACGCCAACAAAACTAAGCCTAAATT 60.221 36.000 0.00 0.00 0.00 1.82
296 297 4.279922 ACGCCAACAAAACTAAGCCTAAAT 59.720 37.500 0.00 0.00 0.00 1.40
297 298 3.633065 ACGCCAACAAAACTAAGCCTAAA 59.367 39.130 0.00 0.00 0.00 1.85
298 299 3.003897 CACGCCAACAAAACTAAGCCTAA 59.996 43.478 0.00 0.00 0.00 2.69
299 300 2.550606 CACGCCAACAAAACTAAGCCTA 59.449 45.455 0.00 0.00 0.00 3.93
300 301 1.336755 CACGCCAACAAAACTAAGCCT 59.663 47.619 0.00 0.00 0.00 4.58
301 302 1.066454 ACACGCCAACAAAACTAAGCC 59.934 47.619 0.00 0.00 0.00 4.35
302 303 2.485266 ACACGCCAACAAAACTAAGC 57.515 45.000 0.00 0.00 0.00 3.09
303 304 4.539509 TGTACACGCCAACAAAACTAAG 57.460 40.909 0.00 0.00 0.00 2.18
304 305 6.615264 TTATGTACACGCCAACAAAACTAA 57.385 33.333 0.00 0.00 0.00 2.24
305 306 6.804770 ATTATGTACACGCCAACAAAACTA 57.195 33.333 0.00 0.00 0.00 2.24
306 307 5.699097 ATTATGTACACGCCAACAAAACT 57.301 34.783 0.00 0.00 0.00 2.66
307 308 7.045225 CGAATATTATGTACACGCCAACAAAAC 60.045 37.037 0.00 0.00 0.00 2.43
308 309 6.962116 CGAATATTATGTACACGCCAACAAAA 59.038 34.615 0.00 0.00 0.00 2.44
309 310 6.457122 CCGAATATTATGTACACGCCAACAAA 60.457 38.462 0.00 0.00 0.00 2.83
310 311 5.006844 CCGAATATTATGTACACGCCAACAA 59.993 40.000 0.00 0.00 0.00 2.83
311 312 4.508492 CCGAATATTATGTACACGCCAACA 59.492 41.667 0.00 0.00 0.00 3.33
312 313 4.508861 ACCGAATATTATGTACACGCCAAC 59.491 41.667 0.00 0.00 0.00 3.77
313 314 4.695396 ACCGAATATTATGTACACGCCAA 58.305 39.130 0.00 0.00 0.00 4.52
314 315 4.325028 ACCGAATATTATGTACACGCCA 57.675 40.909 0.00 0.00 0.00 5.69
315 316 6.768029 TTAACCGAATATTATGTACACGCC 57.232 37.500 0.00 0.00 0.00 5.68
316 317 7.681246 CGAATTAACCGAATATTATGTACACGC 59.319 37.037 0.00 0.00 0.00 5.34
317 318 8.157813 CCGAATTAACCGAATATTATGTACACG 58.842 37.037 0.00 0.00 0.00 4.49
318 319 8.981647 ACCGAATTAACCGAATATTATGTACAC 58.018 33.333 0.00 0.00 0.00 2.90
319 320 8.980610 CACCGAATTAACCGAATATTATGTACA 58.019 33.333 0.00 0.00 0.00 2.90
320 321 8.981647 ACACCGAATTAACCGAATATTATGTAC 58.018 33.333 1.16 0.00 0.00 2.90
322 323 8.981647 GTACACCGAATTAACCGAATATTATGT 58.018 33.333 1.16 0.00 0.00 2.29
323 324 8.437742 GGTACACCGAATTAACCGAATATTATG 58.562 37.037 0.00 0.00 0.00 1.90
324 325 8.538409 GGTACACCGAATTAACCGAATATTAT 57.462 34.615 0.00 0.00 0.00 1.28
325 326 7.945033 GGTACACCGAATTAACCGAATATTA 57.055 36.000 0.00 0.00 0.00 0.98
326 327 6.849588 GGTACACCGAATTAACCGAATATT 57.150 37.500 0.00 0.00 0.00 1.28
342 343 4.814294 CGGCCAGCTCGGTACACC 62.814 72.222 2.24 0.00 36.97 4.16
343 344 2.775032 TTTCGGCCAGCTCGGTACAC 62.775 60.000 2.24 0.00 36.97 2.90
344 345 1.895020 ATTTCGGCCAGCTCGGTACA 61.895 55.000 2.24 0.00 36.97 2.90
345 346 1.152383 GATTTCGGCCAGCTCGGTAC 61.152 60.000 2.24 0.00 36.97 3.34
346 347 1.143183 GATTTCGGCCAGCTCGGTA 59.857 57.895 2.24 0.00 36.97 4.02
347 348 2.125106 GATTTCGGCCAGCTCGGT 60.125 61.111 2.24 0.00 36.97 4.69
348 349 1.502163 GATGATTTCGGCCAGCTCGG 61.502 60.000 2.24 0.00 38.11 4.63
349 350 1.825285 CGATGATTTCGGCCAGCTCG 61.825 60.000 2.24 0.00 44.28 5.03
350 351 1.937391 CGATGATTTCGGCCAGCTC 59.063 57.895 2.24 0.00 44.28 4.09
351 352 4.131376 CGATGATTTCGGCCAGCT 57.869 55.556 2.24 0.00 44.28 4.24
359 360 4.662145 ACGGAAATTGCTTCGATGATTTC 58.338 39.130 13.06 13.06 37.63 2.17
360 361 4.701956 ACGGAAATTGCTTCGATGATTT 57.298 36.364 1.89 0.51 34.56 2.17
361 362 4.701956 AACGGAAATTGCTTCGATGATT 57.298 36.364 1.89 0.00 34.56 2.57
362 363 4.701956 AAACGGAAATTGCTTCGATGAT 57.298 36.364 1.89 0.00 34.56 2.45
363 364 4.497473 AAAACGGAAATTGCTTCGATGA 57.503 36.364 1.89 0.00 34.56 2.92
364 365 4.679197 TCAAAAACGGAAATTGCTTCGATG 59.321 37.500 0.00 0.00 34.56 3.84
365 366 4.865776 TCAAAAACGGAAATTGCTTCGAT 58.134 34.783 0.00 0.00 34.56 3.59
366 367 4.294416 TCAAAAACGGAAATTGCTTCGA 57.706 36.364 0.00 0.00 34.56 3.71
367 368 4.444056 ACATCAAAAACGGAAATTGCTTCG 59.556 37.500 0.00 0.00 34.56 3.79
368 369 5.905480 ACATCAAAAACGGAAATTGCTTC 57.095 34.783 0.00 0.00 0.00 3.86
369 370 6.485393 CAAACATCAAAAACGGAAATTGCTT 58.515 32.000 0.00 0.00 0.00 3.91
370 371 5.503846 GCAAACATCAAAAACGGAAATTGCT 60.504 36.000 0.00 0.00 0.00 3.91
371 372 4.670175 GCAAACATCAAAAACGGAAATTGC 59.330 37.500 0.00 0.00 0.00 3.56
372 373 6.046885 AGCAAACATCAAAAACGGAAATTG 57.953 33.333 0.00 0.00 0.00 2.32
373 374 7.254624 GGTTAGCAAACATCAAAAACGGAAATT 60.255 33.333 0.00 0.00 37.34 1.82
374 375 6.201997 GGTTAGCAAACATCAAAAACGGAAAT 59.798 34.615 0.00 0.00 37.34 2.17
375 376 5.520649 GGTTAGCAAACATCAAAAACGGAAA 59.479 36.000 0.00 0.00 37.34 3.13
376 377 5.044558 GGTTAGCAAACATCAAAAACGGAA 58.955 37.500 0.00 0.00 37.34 4.30
377 378 4.612943 GGTTAGCAAACATCAAAAACGGA 58.387 39.130 0.00 0.00 37.34 4.69
378 379 3.423867 CGGTTAGCAAACATCAAAAACGG 59.576 43.478 0.00 0.00 37.34 4.44
379 380 4.283678 TCGGTTAGCAAACATCAAAAACG 58.716 39.130 0.00 0.00 37.34 3.60
380 381 5.806089 CTCGGTTAGCAAACATCAAAAAC 57.194 39.130 0.00 0.00 37.34 2.43
394 395 1.296056 CCGGTGGTTTGCTCGGTTAG 61.296 60.000 0.00 0.00 37.92 2.34
395 396 1.301874 CCGGTGGTTTGCTCGGTTA 60.302 57.895 0.00 0.00 37.92 2.85
396 397 2.406002 ATCCGGTGGTTTGCTCGGTT 62.406 55.000 0.00 0.00 42.71 4.44
397 398 1.546589 TATCCGGTGGTTTGCTCGGT 61.547 55.000 0.00 0.00 42.71 4.69
398 399 0.179056 ATATCCGGTGGTTTGCTCGG 60.179 55.000 0.00 0.00 43.42 4.63
399 400 1.597663 GAATATCCGGTGGTTTGCTCG 59.402 52.381 0.00 0.00 0.00 5.03
400 401 1.947456 GGAATATCCGGTGGTTTGCTC 59.053 52.381 0.00 0.00 0.00 4.26
401 402 2.052782 GGAATATCCGGTGGTTTGCT 57.947 50.000 0.00 0.00 0.00 3.91
453 454 5.988287 AGAATCAAAGACCAAAGCCAAAAA 58.012 33.333 0.00 0.00 0.00 1.94
454 455 5.600696 GAGAATCAAAGACCAAAGCCAAAA 58.399 37.500 0.00 0.00 33.17 2.44
455 456 4.261572 CGAGAATCAAAGACCAAAGCCAAA 60.262 41.667 0.00 0.00 33.17 3.28
456 457 3.253188 CGAGAATCAAAGACCAAAGCCAA 59.747 43.478 0.00 0.00 33.17 4.52
457 458 2.813754 CGAGAATCAAAGACCAAAGCCA 59.186 45.455 0.00 0.00 33.17 4.75
458 459 2.162408 CCGAGAATCAAAGACCAAAGCC 59.838 50.000 0.00 0.00 33.17 4.35
459 460 2.814336 ACCGAGAATCAAAGACCAAAGC 59.186 45.455 0.00 0.00 33.17 3.51
460 461 5.438761 AAACCGAGAATCAAAGACCAAAG 57.561 39.130 0.00 0.00 33.17 2.77
461 462 5.845391 AAAACCGAGAATCAAAGACCAAA 57.155 34.783 0.00 0.00 33.17 3.28
462 463 5.845391 AAAAACCGAGAATCAAAGACCAA 57.155 34.783 0.00 0.00 33.17 3.67
481 482 2.558800 GGAGGATAGGGTTGGGCAAAAA 60.559 50.000 0.00 0.00 0.00 1.94
482 483 1.006639 GGAGGATAGGGTTGGGCAAAA 59.993 52.381 0.00 0.00 0.00 2.44
483 484 0.629058 GGAGGATAGGGTTGGGCAAA 59.371 55.000 0.00 0.00 0.00 3.68
484 485 0.253630 AGGAGGATAGGGTTGGGCAA 60.254 55.000 0.00 0.00 0.00 4.52
485 486 0.694444 GAGGAGGATAGGGTTGGGCA 60.694 60.000 0.00 0.00 0.00 5.36
486 487 0.400670 AGAGGAGGATAGGGTTGGGC 60.401 60.000 0.00 0.00 0.00 5.36
487 488 1.428869 CAGAGGAGGATAGGGTTGGG 58.571 60.000 0.00 0.00 0.00 4.12
488 489 0.761802 GCAGAGGAGGATAGGGTTGG 59.238 60.000 0.00 0.00 0.00 3.77
489 490 0.761802 GGCAGAGGAGGATAGGGTTG 59.238 60.000 0.00 0.00 0.00 3.77
490 491 0.644937 AGGCAGAGGAGGATAGGGTT 59.355 55.000 0.00 0.00 0.00 4.11
491 492 0.644937 AAGGCAGAGGAGGATAGGGT 59.355 55.000 0.00 0.00 0.00 4.34
492 493 1.347062 GAAGGCAGAGGAGGATAGGG 58.653 60.000 0.00 0.00 0.00 3.53
493 494 1.347062 GGAAGGCAGAGGAGGATAGG 58.653 60.000 0.00 0.00 0.00 2.57
494 495 1.347062 GGGAAGGCAGAGGAGGATAG 58.653 60.000 0.00 0.00 0.00 2.08
495 496 0.642156 TGGGAAGGCAGAGGAGGATA 59.358 55.000 0.00 0.00 0.00 2.59
496 497 0.985490 GTGGGAAGGCAGAGGAGGAT 60.985 60.000 0.00 0.00 0.00 3.24
497 498 1.613630 GTGGGAAGGCAGAGGAGGA 60.614 63.158 0.00 0.00 0.00 3.71
498 499 1.920325 TGTGGGAAGGCAGAGGAGG 60.920 63.158 0.00 0.00 0.00 4.30
499 500 1.298014 GTGTGGGAAGGCAGAGGAG 59.702 63.158 0.00 0.00 0.00 3.69
500 501 1.461268 TGTGTGGGAAGGCAGAGGA 60.461 57.895 0.00 0.00 0.00 3.71
501 502 1.302832 GTGTGTGGGAAGGCAGAGG 60.303 63.158 0.00 0.00 0.00 3.69
502 503 0.037303 ATGTGTGTGGGAAGGCAGAG 59.963 55.000 0.00 0.00 0.00 3.35
503 504 0.250858 CATGTGTGTGGGAAGGCAGA 60.251 55.000 0.00 0.00 0.00 4.26
504 505 0.250858 TCATGTGTGTGGGAAGGCAG 60.251 55.000 0.00 0.00 0.00 4.85
505 506 0.405198 ATCATGTGTGTGGGAAGGCA 59.595 50.000 0.00 0.00 0.00 4.75
506 507 1.098050 GATCATGTGTGTGGGAAGGC 58.902 55.000 0.00 0.00 0.00 4.35
507 508 2.636830 GAGATCATGTGTGTGGGAAGG 58.363 52.381 0.00 0.00 0.00 3.46
508 509 2.636830 GGAGATCATGTGTGTGGGAAG 58.363 52.381 0.00 0.00 0.00 3.46
509 510 1.281867 GGGAGATCATGTGTGTGGGAA 59.718 52.381 0.00 0.00 0.00 3.97
510 511 0.911769 GGGAGATCATGTGTGTGGGA 59.088 55.000 0.00 0.00 0.00 4.37
511 512 0.914644 AGGGAGATCATGTGTGTGGG 59.085 55.000 0.00 0.00 0.00 4.61
512 513 1.134280 GGAGGGAGATCATGTGTGTGG 60.134 57.143 0.00 0.00 0.00 4.17
513 514 1.472201 CGGAGGGAGATCATGTGTGTG 60.472 57.143 0.00 0.00 0.00 3.82
514 515 0.826715 CGGAGGGAGATCATGTGTGT 59.173 55.000 0.00 0.00 0.00 3.72
515 516 0.826715 ACGGAGGGAGATCATGTGTG 59.173 55.000 0.00 0.00 0.00 3.82
516 517 1.115467 GACGGAGGGAGATCATGTGT 58.885 55.000 0.00 0.00 0.00 3.72
517 518 0.031314 CGACGGAGGGAGATCATGTG 59.969 60.000 0.00 0.00 0.00 3.21
518 519 0.395862 ACGACGGAGGGAGATCATGT 60.396 55.000 0.00 0.00 0.00 3.21
519 520 0.031314 CACGACGGAGGGAGATCATG 59.969 60.000 0.00 0.00 0.00 3.07
520 521 1.739338 GCACGACGGAGGGAGATCAT 61.739 60.000 0.00 0.00 0.00 2.45
521 522 2.415608 GCACGACGGAGGGAGATCA 61.416 63.158 0.00 0.00 0.00 2.92
522 523 2.413765 GCACGACGGAGGGAGATC 59.586 66.667 0.00 0.00 0.00 2.75
523 524 3.148279 GGCACGACGGAGGGAGAT 61.148 66.667 0.00 0.00 0.00 2.75
524 525 4.361971 AGGCACGACGGAGGGAGA 62.362 66.667 0.00 0.00 0.00 3.71
525 526 3.827898 GAGGCACGACGGAGGGAG 61.828 72.222 0.00 0.00 0.00 4.30
528 529 1.828660 ATAGGAGGCACGACGGAGG 60.829 63.158 0.00 0.00 0.00 4.30
529 530 1.360551 CATAGGAGGCACGACGGAG 59.639 63.158 0.00 0.00 0.00 4.63
530 531 2.782222 GCATAGGAGGCACGACGGA 61.782 63.158 0.00 0.00 0.00 4.69
531 532 2.279517 GCATAGGAGGCACGACGG 60.280 66.667 0.00 0.00 0.00 4.79
532 533 2.279517 GGCATAGGAGGCACGACG 60.280 66.667 0.00 0.00 0.00 5.12
533 534 1.068250 GAGGCATAGGAGGCACGAC 59.932 63.158 0.00 0.00 36.37 4.34
534 535 0.760567 ATGAGGCATAGGAGGCACGA 60.761 55.000 0.00 0.00 36.37 4.35
535 536 0.107456 AATGAGGCATAGGAGGCACG 59.893 55.000 0.00 0.00 36.37 5.34
536 537 1.875576 CGAATGAGGCATAGGAGGCAC 60.876 57.143 0.00 0.00 36.37 5.01
537 538 0.394192 CGAATGAGGCATAGGAGGCA 59.606 55.000 0.00 0.00 36.37 4.75
538 539 0.394565 ACGAATGAGGCATAGGAGGC 59.605 55.000 0.00 0.00 0.00 4.70
539 540 1.875576 GCACGAATGAGGCATAGGAGG 60.876 57.143 0.00 0.00 0.00 4.30
540 541 1.506493 GCACGAATGAGGCATAGGAG 58.494 55.000 0.00 0.00 0.00 3.69
541 542 0.106708 GGCACGAATGAGGCATAGGA 59.893 55.000 0.00 0.00 0.00 2.94
542 543 0.107456 AGGCACGAATGAGGCATAGG 59.893 55.000 0.00 0.00 33.61 2.57
543 544 1.506493 GAGGCACGAATGAGGCATAG 58.494 55.000 0.00 0.00 33.61 2.23
544 545 0.106708 GGAGGCACGAATGAGGCATA 59.893 55.000 0.00 0.00 33.61 3.14
545 546 1.153086 GGAGGCACGAATGAGGCAT 60.153 57.895 0.00 0.00 33.61 4.40
546 547 2.123248 TTGGAGGCACGAATGAGGCA 62.123 55.000 0.00 0.00 33.61 4.75
547 548 1.372087 CTTGGAGGCACGAATGAGGC 61.372 60.000 0.00 0.00 0.00 4.70
548 549 0.745845 CCTTGGAGGCACGAATGAGG 60.746 60.000 0.00 0.00 0.00 3.86
549 550 0.250234 TCCTTGGAGGCACGAATGAG 59.750 55.000 0.00 0.00 34.61 2.90
550 551 0.036388 GTCCTTGGAGGCACGAATGA 60.036 55.000 0.00 0.00 34.61 2.57
551 552 0.321564 TGTCCTTGGAGGCACGAATG 60.322 55.000 0.00 0.00 34.61 2.67
552 553 0.400213 TTGTCCTTGGAGGCACGAAT 59.600 50.000 0.00 0.00 34.61 3.34
553 554 0.400213 ATTGTCCTTGGAGGCACGAA 59.600 50.000 0.00 0.00 34.61 3.85
554 555 0.321564 CATTGTCCTTGGAGGCACGA 60.322 55.000 0.00 0.00 34.61 4.35
555 556 0.606401 ACATTGTCCTTGGAGGCACG 60.606 55.000 0.00 0.00 34.61 5.34
556 557 1.270550 CAACATTGTCCTTGGAGGCAC 59.729 52.381 0.00 0.00 34.61 5.01
557 558 1.144708 TCAACATTGTCCTTGGAGGCA 59.855 47.619 0.00 0.00 34.61 4.75
558 559 1.541588 GTCAACATTGTCCTTGGAGGC 59.458 52.381 0.00 0.00 34.61 4.70
559 560 2.862541 TGTCAACATTGTCCTTGGAGG 58.137 47.619 0.00 0.00 36.46 4.30
560 561 4.074259 TGATGTCAACATTGTCCTTGGAG 58.926 43.478 0.00 0.00 36.57 3.86
561 562 4.074259 CTGATGTCAACATTGTCCTTGGA 58.926 43.478 0.00 0.00 36.57 3.53
562 563 3.822735 ACTGATGTCAACATTGTCCTTGG 59.177 43.478 0.00 0.00 36.57 3.61
563 564 5.039480 GACTGATGTCAACATTGTCCTTG 57.961 43.478 14.14 0.00 42.48 3.61
576 577 6.366877 CCAATCAAAAATGGTTGACTGATGTC 59.633 38.462 3.48 0.00 36.99 3.06
577 578 6.225318 CCAATCAAAAATGGTTGACTGATGT 58.775 36.000 3.48 0.00 36.99 3.06
578 579 5.121142 GCCAATCAAAAATGGTTGACTGATG 59.879 40.000 3.48 0.00 36.99 3.07
579 580 5.221682 TGCCAATCAAAAATGGTTGACTGAT 60.222 36.000 3.48 0.00 36.99 2.90
580 581 4.100653 TGCCAATCAAAAATGGTTGACTGA 59.899 37.500 3.48 0.00 36.99 3.41
581 582 4.378774 TGCCAATCAAAAATGGTTGACTG 58.621 39.130 3.48 0.00 40.22 3.51
582 583 4.686191 TGCCAATCAAAAATGGTTGACT 57.314 36.364 3.48 0.00 40.22 3.41
583 584 5.747951 TTTGCCAATCAAAAATGGTTGAC 57.252 34.783 3.48 0.00 41.36 3.18
584 585 6.149142 GCTATTTGCCAATCAAAAATGGTTGA 59.851 34.615 3.48 0.00 46.60 3.18
585 586 6.149807 AGCTATTTGCCAATCAAAAATGGTTG 59.850 34.615 0.00 0.00 46.60 3.77
586 587 6.240145 AGCTATTTGCCAATCAAAAATGGTT 58.760 32.000 0.00 0.00 46.60 3.67
587 588 5.807909 AGCTATTTGCCAATCAAAAATGGT 58.192 33.333 0.00 0.00 46.60 3.55
588 589 5.295045 GGAGCTATTTGCCAATCAAAAATGG 59.705 40.000 0.00 0.00 46.60 3.16
589 590 5.295045 GGGAGCTATTTGCCAATCAAAAATG 59.705 40.000 0.00 0.00 46.60 2.32
590 591 5.045724 TGGGAGCTATTTGCCAATCAAAAAT 60.046 36.000 0.00 0.00 46.60 1.82
591 592 4.285517 TGGGAGCTATTTGCCAATCAAAAA 59.714 37.500 0.00 0.00 46.60 1.94
592 593 3.837146 TGGGAGCTATTTGCCAATCAAAA 59.163 39.130 0.00 0.00 46.60 2.44
594 595 3.098774 TGGGAGCTATTTGCCAATCAA 57.901 42.857 0.00 0.00 44.23 2.57
595 596 2.824689 TGGGAGCTATTTGCCAATCA 57.175 45.000 0.00 0.00 44.23 2.57
596 597 2.288640 GCATGGGAGCTATTTGCCAATC 60.289 50.000 0.00 0.00 42.16 2.67
597 598 1.690352 GCATGGGAGCTATTTGCCAAT 59.310 47.619 0.00 0.00 42.16 3.16
598 599 1.113788 GCATGGGAGCTATTTGCCAA 58.886 50.000 0.00 0.00 42.16 4.52
599 600 0.033306 TGCATGGGAGCTATTTGCCA 60.033 50.000 0.00 0.00 43.09 4.92
618 619 2.489971 ACAATTCACACCAACGACGAT 58.510 42.857 0.00 0.00 0.00 3.73
969 985 2.739287 CCCGAAACGGCGTTGCTA 60.739 61.111 27.50 0.00 46.86 3.49
1087 1103 0.545309 ACTAGCTGCTTCAGGGGTGA 60.545 55.000 7.79 0.00 31.21 4.02
1355 1374 3.005472 CGGTAAATCGAGCTCCCTTGATA 59.995 47.826 8.47 0.00 40.58 2.15
1431 1488 1.570857 CCCCACAGTAGCCCCAATGA 61.571 60.000 0.00 0.00 0.00 2.57
1880 1963 2.020720 TCAATGACCGTGTGCACTTTT 58.979 42.857 19.41 0.00 0.00 2.27
1935 2023 7.286775 AGGTGACTGCAGGAAACTTAAAATTTA 59.713 33.333 19.93 0.00 37.96 1.40
2315 2429 9.865321 TTAGCACGTGTCTAGTTAATTATCTTT 57.135 29.630 18.38 0.00 0.00 2.52
2423 2537 2.307686 TCGGGCCTAAAGTTTCTCCATT 59.692 45.455 0.84 0.00 0.00 3.16
2424 2538 1.913419 TCGGGCCTAAAGTTTCTCCAT 59.087 47.619 0.84 0.00 0.00 3.41
2425 2539 1.354101 TCGGGCCTAAAGTTTCTCCA 58.646 50.000 0.84 0.00 0.00 3.86
2426 2540 2.484742 TTCGGGCCTAAAGTTTCTCC 57.515 50.000 0.84 0.00 0.00 3.71
2427 2541 4.841443 TTTTTCGGGCCTAAAGTTTCTC 57.159 40.909 0.84 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.