Multiple sequence alignment - TraesCS2A01G058200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G058200 chr2A 100.000 3009 0 0 1 3009 24406270 24409278 0.000000e+00 5557.0
1 TraesCS2A01G058200 chr2A 85.251 1017 123 19 970 1982 24181949 24180956 0.000000e+00 1022.0
2 TraesCS2A01G058200 chr2A 85.177 931 109 17 1105 2022 24277536 24276622 0.000000e+00 928.0
3 TraesCS2A01G058200 chr2A 90.670 418 32 4 245 660 593299598 593299186 1.580000e-152 549.0
4 TraesCS2A01G058200 chr2B 91.417 1468 81 27 664 2111 38421977 38420535 0.000000e+00 1971.0
5 TraesCS2A01G058200 chr2B 91.686 1323 84 14 767 2085 38050323 38049023 0.000000e+00 1810.0
6 TraesCS2A01G058200 chr2B 90.735 1360 89 22 664 2010 39091363 39090028 0.000000e+00 1779.0
7 TraesCS2A01G058200 chr2B 84.680 1064 129 24 938 1993 39333251 39334288 0.000000e+00 1031.0
8 TraesCS2A01G058200 chr2B 85.251 1017 128 16 971 1979 39158986 39157984 0.000000e+00 1027.0
9 TraesCS2A01G058200 chr2B 83.619 818 77 14 2228 3009 38420538 38419742 0.000000e+00 715.0
10 TraesCS2A01G058200 chr2B 86.154 650 45 7 1975 2588 38090851 38090211 0.000000e+00 660.0
11 TraesCS2A01G058200 chr2B 81.468 804 65 38 2245 3009 39089899 39089141 1.550000e-162 582.0
12 TraesCS2A01G058200 chr2B 91.852 135 10 1 664 797 39151943 39151809 1.420000e-43 187.0
13 TraesCS2A01G058200 chr2B 79.668 241 30 8 1772 2005 39336049 39336277 4.020000e-34 156.0
14 TraesCS2A01G058200 chr2B 92.929 99 3 1 2119 2217 39089988 39089894 1.120000e-29 141.0
15 TraesCS2A01G058200 chr2B 92.683 82 6 0 2069 2150 38049012 38048931 5.270000e-23 119.0
16 TraesCS2A01G058200 chr2D 91.746 1369 85 18 660 2013 22795402 22796757 0.000000e+00 1877.0
17 TraesCS2A01G058200 chr2D 85.503 1014 125 10 971 1979 22785756 22786752 0.000000e+00 1038.0
18 TraesCS2A01G058200 chr2D 84.103 585 74 12 2429 3007 22817158 22817729 5.670000e-152 547.0
19 TraesCS2A01G058200 chr2D 91.304 345 17 6 2018 2353 22796800 22797140 2.730000e-125 459.0
20 TraesCS2A01G058200 chr5D 92.701 411 28 2 249 658 374393569 374393160 2.580000e-165 592.0
21 TraesCS2A01G058200 chr5D 87.105 411 44 8 249 658 525087660 525088062 9.830000e-125 457.0
22 TraesCS2A01G058200 chr7B 89.294 411 37 7 249 657 684014575 684014170 2.680000e-140 508.0
23 TraesCS2A01G058200 chr7B 86.199 413 49 7 249 659 15930947 15930541 9.900000e-120 440.0
24 TraesCS2A01G058200 chr4D 90.181 387 27 8 247 632 323597562 323597186 7.490000e-136 494.0
25 TraesCS2A01G058200 chr3D 86.957 414 45 8 249 659 454744552 454744145 9.830000e-125 457.0
26 TraesCS2A01G058200 chr5A 86.165 412 51 6 249 658 415163552 415163959 9.900000e-120 440.0
27 TraesCS2A01G058200 chr5A 80.508 118 23 0 2560 2677 633324086 633324203 1.150000e-14 91.6
28 TraesCS2A01G058200 chr1D 85.956 413 48 9 249 659 442791824 442791420 1.660000e-117 433.0
29 TraesCS2A01G058200 chr5B 78.992 119 25 0 2559 2677 636266735 636266853 6.910000e-12 82.4
30 TraesCS2A01G058200 chr4A 79.310 116 24 0 2559 2674 664180930 664181045 6.910000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G058200 chr2A 24406270 24409278 3008 False 5557.0 5557 100.000000 1 3009 1 chr2A.!!$F1 3008
1 TraesCS2A01G058200 chr2A 24180956 24181949 993 True 1022.0 1022 85.251000 970 1982 1 chr2A.!!$R1 1012
2 TraesCS2A01G058200 chr2A 24276622 24277536 914 True 928.0 928 85.177000 1105 2022 1 chr2A.!!$R2 917
3 TraesCS2A01G058200 chr2B 38419742 38421977 2235 True 1343.0 1971 87.518000 664 3009 2 chr2B.!!$R5 2345
4 TraesCS2A01G058200 chr2B 39157984 39158986 1002 True 1027.0 1027 85.251000 971 1979 1 chr2B.!!$R3 1008
5 TraesCS2A01G058200 chr2B 38048931 38050323 1392 True 964.5 1810 92.184500 767 2150 2 chr2B.!!$R4 1383
6 TraesCS2A01G058200 chr2B 39089141 39091363 2222 True 834.0 1779 88.377333 664 3009 3 chr2B.!!$R6 2345
7 TraesCS2A01G058200 chr2B 38090211 38090851 640 True 660.0 660 86.154000 1975 2588 1 chr2B.!!$R1 613
8 TraesCS2A01G058200 chr2B 39333251 39336277 3026 False 593.5 1031 82.174000 938 2005 2 chr2B.!!$F1 1067
9 TraesCS2A01G058200 chr2D 22795402 22797140 1738 False 1168.0 1877 91.525000 660 2353 2 chr2D.!!$F3 1693
10 TraesCS2A01G058200 chr2D 22785756 22786752 996 False 1038.0 1038 85.503000 971 1979 1 chr2D.!!$F1 1008
11 TraesCS2A01G058200 chr2D 22817158 22817729 571 False 547.0 547 84.103000 2429 3007 1 chr2D.!!$F2 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 213 0.106116 GATGGGACGGAGGGAGTACT 60.106 60.0 0.0 0.0 0.0 2.73 F
252 253 0.106217 AAGGGTGTGTTTGTGGGAGG 60.106 55.0 0.0 0.0 0.0 4.30 F
1395 1454 0.036022 GCCATCCTCAGCATCTACCC 59.964 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1395 1454 1.080772 TGCAGCCGAGAGTTGTACG 60.081 57.895 0.00 0.00 0.00 3.67 R
1403 1462 3.075005 GTAGGGGTGCAGCCGAGA 61.075 66.667 27.67 13.03 38.44 4.04 R
2379 3287 0.250209 CATGAATAGCAGAGCGGCCT 60.250 55.000 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.458573 TTGTGACATACAACTTCTAATTGGTT 57.541 30.769 0.00 0.00 44.07 3.67
38 39 9.562408 TTGTGACATACAACTTCTAATTGGTTA 57.438 29.630 0.00 0.00 44.07 2.85
39 40 9.214957 TGTGACATACAACTTCTAATTGGTTAG 57.785 33.333 0.00 0.00 36.52 2.34
40 41 9.216117 GTGACATACAACTTCTAATTGGTTAGT 57.784 33.333 0.00 0.00 38.72 2.24
41 42 9.431887 TGACATACAACTTCTAATTGGTTAGTC 57.568 33.333 0.00 0.00 38.72 2.59
42 43 9.431887 GACATACAACTTCTAATTGGTTAGTCA 57.568 33.333 0.00 0.00 38.72 3.41
43 44 9.787435 ACATACAACTTCTAATTGGTTAGTCAA 57.213 29.630 0.00 0.00 38.72 3.18
47 48 9.574516 ACAACTTCTAATTGGTTAGTCAAATCT 57.425 29.630 0.00 0.00 38.72 2.40
48 49 9.831737 CAACTTCTAATTGGTTAGTCAAATCTG 57.168 33.333 0.00 0.00 38.72 2.90
49 50 8.045176 ACTTCTAATTGGTTAGTCAAATCTGC 57.955 34.615 0.00 0.00 38.72 4.26
50 51 6.662414 TCTAATTGGTTAGTCAAATCTGCG 57.338 37.500 0.00 0.00 38.72 5.18
51 52 4.701956 AATTGGTTAGTCAAATCTGCGG 57.298 40.909 0.00 0.00 0.00 5.69
52 53 2.851263 TGGTTAGTCAAATCTGCGGT 57.149 45.000 0.00 0.00 0.00 5.68
53 54 2.695359 TGGTTAGTCAAATCTGCGGTC 58.305 47.619 0.00 0.00 0.00 4.79
54 55 2.037902 TGGTTAGTCAAATCTGCGGTCA 59.962 45.455 0.00 0.00 0.00 4.02
55 56 3.071479 GGTTAGTCAAATCTGCGGTCAA 58.929 45.455 0.00 0.00 0.00 3.18
56 57 3.500680 GGTTAGTCAAATCTGCGGTCAAA 59.499 43.478 0.00 0.00 0.00 2.69
57 58 4.378459 GGTTAGTCAAATCTGCGGTCAAAG 60.378 45.833 0.00 0.00 0.00 2.77
58 59 2.851195 AGTCAAATCTGCGGTCAAAGT 58.149 42.857 0.00 0.00 0.00 2.66
59 60 3.214328 AGTCAAATCTGCGGTCAAAGTT 58.786 40.909 0.00 0.00 0.00 2.66
60 61 3.003689 AGTCAAATCTGCGGTCAAAGTTG 59.996 43.478 0.00 0.00 0.00 3.16
61 62 2.053627 CAAATCTGCGGTCAAAGTTGC 58.946 47.619 0.00 0.00 0.00 4.17
62 63 0.238289 AATCTGCGGTCAAAGTTGCG 59.762 50.000 0.00 0.00 0.00 4.85
63 64 2.187599 ATCTGCGGTCAAAGTTGCGC 62.188 55.000 0.00 0.00 39.18 6.09
64 65 3.179869 CTGCGGTCAAAGTTGCGCA 62.180 57.895 5.66 5.66 43.65 6.09
65 66 2.725815 GCGGTCAAAGTTGCGCAC 60.726 61.111 11.12 5.61 38.78 5.34
66 67 2.712539 CGGTCAAAGTTGCGCACA 59.287 55.556 11.12 0.00 0.00 4.57
67 68 1.063327 CGGTCAAAGTTGCGCACAA 59.937 52.632 11.12 0.00 0.00 3.33
68 69 0.524392 CGGTCAAAGTTGCGCACAAA 60.524 50.000 11.12 0.00 37.58 2.83
69 70 1.634702 GGTCAAAGTTGCGCACAAAA 58.365 45.000 11.12 0.00 37.58 2.44
70 71 2.200899 GGTCAAAGTTGCGCACAAAAT 58.799 42.857 11.12 0.00 37.58 1.82
71 72 3.376540 GGTCAAAGTTGCGCACAAAATA 58.623 40.909 11.12 0.00 37.58 1.40
72 73 3.181575 GGTCAAAGTTGCGCACAAAATAC 59.818 43.478 11.12 4.11 37.58 1.89
73 74 3.794028 GTCAAAGTTGCGCACAAAATACA 59.206 39.130 11.12 0.00 37.58 2.29
74 75 4.266502 GTCAAAGTTGCGCACAAAATACAA 59.733 37.500 11.12 0.00 37.58 2.41
75 76 4.864806 TCAAAGTTGCGCACAAAATACAAA 59.135 33.333 11.12 0.00 37.58 2.83
76 77 5.005203 TCAAAGTTGCGCACAAAATACAAAG 59.995 36.000 11.12 0.00 37.58 2.77
77 78 3.380142 AGTTGCGCACAAAATACAAAGG 58.620 40.909 11.12 0.00 37.58 3.11
78 79 2.430546 TGCGCACAAAATACAAAGGG 57.569 45.000 5.66 0.00 0.00 3.95
79 80 1.957177 TGCGCACAAAATACAAAGGGA 59.043 42.857 5.66 0.00 0.00 4.20
80 81 2.560542 TGCGCACAAAATACAAAGGGAT 59.439 40.909 5.66 0.00 0.00 3.85
81 82 3.179048 GCGCACAAAATACAAAGGGATC 58.821 45.455 0.30 0.00 0.00 3.36
82 83 3.366883 GCGCACAAAATACAAAGGGATCA 60.367 43.478 0.30 0.00 0.00 2.92
83 84 4.804108 CGCACAAAATACAAAGGGATCAA 58.196 39.130 0.00 0.00 0.00 2.57
84 85 5.410067 CGCACAAAATACAAAGGGATCAAT 58.590 37.500 0.00 0.00 0.00 2.57
85 86 6.559810 CGCACAAAATACAAAGGGATCAATA 58.440 36.000 0.00 0.00 0.00 1.90
86 87 7.032580 CGCACAAAATACAAAGGGATCAATAA 58.967 34.615 0.00 0.00 0.00 1.40
87 88 7.543868 CGCACAAAATACAAAGGGATCAATAAA 59.456 33.333 0.00 0.00 0.00 1.40
88 89 8.655970 GCACAAAATACAAAGGGATCAATAAAC 58.344 33.333 0.00 0.00 0.00 2.01
89 90 9.150348 CACAAAATACAAAGGGATCAATAAACC 57.850 33.333 0.00 0.00 0.00 3.27
90 91 8.318412 ACAAAATACAAAGGGATCAATAAACCC 58.682 33.333 0.00 0.00 43.55 4.11
95 96 1.589803 GGGATCAATAAACCCGGACG 58.410 55.000 0.73 0.00 34.03 4.79
96 97 1.589803 GGATCAATAAACCCGGACGG 58.410 55.000 0.73 3.25 37.81 4.79
97 98 1.139455 GGATCAATAAACCCGGACGGA 59.861 52.381 13.13 0.00 37.50 4.69
98 99 2.480845 GATCAATAAACCCGGACGGAG 58.519 52.381 13.13 5.04 37.50 4.63
99 100 0.538118 TCAATAAACCCGGACGGAGG 59.462 55.000 13.13 0.00 37.50 4.30
100 101 0.251073 CAATAAACCCGGACGGAGGT 59.749 55.000 13.13 0.00 38.27 3.85
101 102 1.481772 CAATAAACCCGGACGGAGGTA 59.518 52.381 13.13 1.24 34.45 3.08
102 103 1.864669 ATAAACCCGGACGGAGGTAA 58.135 50.000 13.13 0.00 34.45 2.85
103 104 1.864669 TAAACCCGGACGGAGGTAAT 58.135 50.000 13.13 0.00 34.45 1.89
104 105 1.864669 AAACCCGGACGGAGGTAATA 58.135 50.000 13.13 0.00 34.45 0.98
105 106 1.864669 AACCCGGACGGAGGTAATAA 58.135 50.000 13.13 0.00 34.45 1.40
106 107 1.864669 ACCCGGACGGAGGTAATAAA 58.135 50.000 13.13 0.00 37.50 1.40
107 108 1.482182 ACCCGGACGGAGGTAATAAAC 59.518 52.381 13.13 0.00 37.50 2.01
108 109 3.801694 ACCCGGACGGAGGTAATAAACC 61.802 54.545 13.13 0.00 41.42 3.27
125 126 4.641645 CCCAGTGGGCTCGTTGCA 62.642 66.667 17.33 0.00 45.15 4.08
127 128 3.357079 CAGTGGGCTCGTTGCACC 61.357 66.667 3.32 4.11 46.54 5.01
128 129 4.988598 AGTGGGCTCGTTGCACCG 62.989 66.667 0.00 0.00 46.54 4.94
130 131 3.617735 TGGGCTCGTTGCACCGTA 61.618 61.111 2.82 0.00 46.54 4.02
131 132 2.357760 GGGCTCGTTGCACCGTAA 60.358 61.111 2.82 0.00 45.15 3.18
132 133 1.962306 GGGCTCGTTGCACCGTAAA 60.962 57.895 2.82 0.00 45.15 2.01
133 134 1.508808 GGGCTCGTTGCACCGTAAAA 61.509 55.000 2.82 0.00 45.15 1.52
134 135 0.308376 GGCTCGTTGCACCGTAAAAA 59.692 50.000 2.82 0.00 45.15 1.94
157 158 8.738645 AAAATGTTGAGTTGATATACTCCCTC 57.261 34.615 3.68 0.00 43.11 4.30
158 159 5.871396 TGTTGAGTTGATATACTCCCTCC 57.129 43.478 3.68 0.00 43.11 4.30
159 160 4.341235 TGTTGAGTTGATATACTCCCTCCG 59.659 45.833 3.68 0.00 43.11 4.63
160 161 4.180377 TGAGTTGATATACTCCCTCCGT 57.820 45.455 3.68 0.00 43.11 4.69
161 162 4.543689 TGAGTTGATATACTCCCTCCGTT 58.456 43.478 3.68 0.00 43.11 4.44
162 163 4.960469 TGAGTTGATATACTCCCTCCGTTT 59.040 41.667 3.68 0.00 43.11 3.60
163 164 5.068723 TGAGTTGATATACTCCCTCCGTTTC 59.931 44.000 3.68 0.00 43.11 2.78
164 165 4.960469 AGTTGATATACTCCCTCCGTTTCA 59.040 41.667 0.00 0.00 0.00 2.69
165 166 5.602978 AGTTGATATACTCCCTCCGTTTCAT 59.397 40.000 0.00 0.00 0.00 2.57
166 167 6.781014 AGTTGATATACTCCCTCCGTTTCATA 59.219 38.462 0.00 0.00 0.00 2.15
167 168 7.289317 AGTTGATATACTCCCTCCGTTTCATAA 59.711 37.037 0.00 0.00 0.00 1.90
168 169 7.228314 TGATATACTCCCTCCGTTTCATAAG 57.772 40.000 0.00 0.00 0.00 1.73
169 170 6.781014 TGATATACTCCCTCCGTTTCATAAGT 59.219 38.462 0.00 0.00 0.00 2.24
170 171 7.946219 TGATATACTCCCTCCGTTTCATAAGTA 59.054 37.037 0.00 0.00 0.00 2.24
171 172 8.896722 ATATACTCCCTCCGTTTCATAAGTAT 57.103 34.615 0.00 0.00 34.20 2.12
172 173 9.986157 ATATACTCCCTCCGTTTCATAAGTATA 57.014 33.333 0.00 0.00 36.15 1.47
173 174 8.716674 ATACTCCCTCCGTTTCATAAGTATAA 57.283 34.615 0.00 0.00 29.41 0.98
174 175 7.052142 ACTCCCTCCGTTTCATAAGTATAAG 57.948 40.000 0.00 0.00 0.00 1.73
175 176 6.837568 ACTCCCTCCGTTTCATAAGTATAAGA 59.162 38.462 0.00 0.00 0.00 2.10
176 177 7.014422 ACTCCCTCCGTTTCATAAGTATAAGAG 59.986 40.741 0.00 0.00 0.00 2.85
177 178 6.837568 TCCCTCCGTTTCATAAGTATAAGAGT 59.162 38.462 0.00 0.00 0.00 3.24
178 179 6.924060 CCCTCCGTTTCATAAGTATAAGAGTG 59.076 42.308 0.00 0.00 0.00 3.51
179 180 7.417570 CCCTCCGTTTCATAAGTATAAGAGTGT 60.418 40.741 0.00 0.00 0.00 3.55
180 181 7.980099 CCTCCGTTTCATAAGTATAAGAGTGTT 59.020 37.037 0.00 0.00 0.00 3.32
181 182 9.367444 CTCCGTTTCATAAGTATAAGAGTGTTT 57.633 33.333 0.00 0.00 0.00 2.83
182 183 9.715121 TCCGTTTCATAAGTATAAGAGTGTTTT 57.285 29.630 0.00 0.00 0.00 2.43
200 201 6.325919 TGTTTTTGACACTAATGATGGGAC 57.674 37.500 0.00 0.00 32.00 4.46
201 202 5.049060 TGTTTTTGACACTAATGATGGGACG 60.049 40.000 0.00 0.00 32.00 4.79
202 203 2.979814 TGACACTAATGATGGGACGG 57.020 50.000 0.00 0.00 0.00 4.79
203 204 2.462723 TGACACTAATGATGGGACGGA 58.537 47.619 0.00 0.00 0.00 4.69
204 205 2.430694 TGACACTAATGATGGGACGGAG 59.569 50.000 0.00 0.00 0.00 4.63
205 206 1.762957 ACACTAATGATGGGACGGAGG 59.237 52.381 0.00 0.00 0.00 4.30
206 207 1.070758 CACTAATGATGGGACGGAGGG 59.929 57.143 0.00 0.00 0.00 4.30
207 208 1.062428 ACTAATGATGGGACGGAGGGA 60.062 52.381 0.00 0.00 0.00 4.20
208 209 1.620819 CTAATGATGGGACGGAGGGAG 59.379 57.143 0.00 0.00 0.00 4.30
209 210 0.326618 AATGATGGGACGGAGGGAGT 60.327 55.000 0.00 0.00 0.00 3.85
210 211 0.561184 ATGATGGGACGGAGGGAGTA 59.439 55.000 0.00 0.00 0.00 2.59
211 212 0.396695 TGATGGGACGGAGGGAGTAC 60.397 60.000 0.00 0.00 0.00 2.73
212 213 0.106116 GATGGGACGGAGGGAGTACT 60.106 60.000 0.00 0.00 0.00 2.73
213 214 1.144503 GATGGGACGGAGGGAGTACTA 59.855 57.143 0.00 0.00 0.00 1.82
214 215 1.229131 TGGGACGGAGGGAGTACTAT 58.771 55.000 0.00 0.00 0.00 2.12
215 216 1.133575 TGGGACGGAGGGAGTACTATG 60.134 57.143 0.00 0.00 0.00 2.23
216 217 1.133544 GGGACGGAGGGAGTACTATGT 60.134 57.143 0.00 0.00 0.00 2.29
217 218 2.664015 GGACGGAGGGAGTACTATGTT 58.336 52.381 0.00 0.00 0.00 2.71
218 219 3.029570 GGACGGAGGGAGTACTATGTTT 58.970 50.000 0.00 0.00 0.00 2.83
219 220 3.067883 GGACGGAGGGAGTACTATGTTTC 59.932 52.174 0.00 0.00 0.00 2.78
220 221 3.698040 GACGGAGGGAGTACTATGTTTCA 59.302 47.826 0.00 0.00 0.00 2.69
221 222 4.091549 ACGGAGGGAGTACTATGTTTCAA 58.908 43.478 0.00 0.00 0.00 2.69
222 223 4.715297 ACGGAGGGAGTACTATGTTTCAAT 59.285 41.667 0.00 0.00 0.00 2.57
223 224 5.895534 ACGGAGGGAGTACTATGTTTCAATA 59.104 40.000 0.00 0.00 0.00 1.90
224 225 6.381994 ACGGAGGGAGTACTATGTTTCAATAA 59.618 38.462 0.00 0.00 0.00 1.40
225 226 7.093201 ACGGAGGGAGTACTATGTTTCAATAAA 60.093 37.037 0.00 0.00 0.00 1.40
226 227 7.438459 CGGAGGGAGTACTATGTTTCAATAAAG 59.562 40.741 0.00 0.00 0.00 1.85
227 228 8.483758 GGAGGGAGTACTATGTTTCAATAAAGA 58.516 37.037 0.00 0.00 0.00 2.52
239 240 9.927668 ATGTTTCAATAAAGATTTGTAAGGGTG 57.072 29.630 0.00 0.00 0.00 4.61
240 241 8.919145 TGTTTCAATAAAGATTTGTAAGGGTGT 58.081 29.630 0.00 0.00 0.00 4.16
241 242 9.191995 GTTTCAATAAAGATTTGTAAGGGTGTG 57.808 33.333 0.00 0.00 0.00 3.82
242 243 8.472007 TTCAATAAAGATTTGTAAGGGTGTGT 57.528 30.769 0.00 0.00 0.00 3.72
243 244 8.472007 TCAATAAAGATTTGTAAGGGTGTGTT 57.528 30.769 0.00 0.00 0.00 3.32
244 245 8.919145 TCAATAAAGATTTGTAAGGGTGTGTTT 58.081 29.630 0.00 0.00 0.00 2.83
245 246 8.977505 CAATAAAGATTTGTAAGGGTGTGTTTG 58.022 33.333 0.00 0.00 0.00 2.93
246 247 6.538945 AAAGATTTGTAAGGGTGTGTTTGT 57.461 33.333 0.00 0.00 0.00 2.83
247 248 5.514274 AGATTTGTAAGGGTGTGTTTGTG 57.486 39.130 0.00 0.00 0.00 3.33
248 249 4.340950 AGATTTGTAAGGGTGTGTTTGTGG 59.659 41.667 0.00 0.00 0.00 4.17
249 250 2.060050 TGTAAGGGTGTGTTTGTGGG 57.940 50.000 0.00 0.00 0.00 4.61
250 251 1.564818 TGTAAGGGTGTGTTTGTGGGA 59.435 47.619 0.00 0.00 0.00 4.37
251 252 2.227194 GTAAGGGTGTGTTTGTGGGAG 58.773 52.381 0.00 0.00 0.00 4.30
252 253 0.106217 AAGGGTGTGTTTGTGGGAGG 60.106 55.000 0.00 0.00 0.00 4.30
253 254 1.530655 GGGTGTGTTTGTGGGAGGG 60.531 63.158 0.00 0.00 0.00 4.30
254 255 1.534697 GGTGTGTTTGTGGGAGGGA 59.465 57.895 0.00 0.00 0.00 4.20
255 256 0.106419 GGTGTGTTTGTGGGAGGGAA 60.106 55.000 0.00 0.00 0.00 3.97
256 257 1.686741 GGTGTGTTTGTGGGAGGGAAA 60.687 52.381 0.00 0.00 0.00 3.13
257 258 1.407618 GTGTGTTTGTGGGAGGGAAAC 59.592 52.381 0.00 0.00 0.00 2.78
258 259 1.286553 TGTGTTTGTGGGAGGGAAACT 59.713 47.619 0.00 0.00 32.01 2.66
259 260 2.291930 TGTGTTTGTGGGAGGGAAACTT 60.292 45.455 0.00 0.00 32.01 2.66
260 261 2.764010 GTGTTTGTGGGAGGGAAACTTT 59.236 45.455 0.00 0.00 32.01 2.66
261 262 3.196901 GTGTTTGTGGGAGGGAAACTTTT 59.803 43.478 0.00 0.00 32.01 2.27
262 263 4.403113 GTGTTTGTGGGAGGGAAACTTTTA 59.597 41.667 0.00 0.00 32.01 1.52
263 264 4.647399 TGTTTGTGGGAGGGAAACTTTTAG 59.353 41.667 0.00 0.00 32.01 1.85
264 265 4.529716 TTGTGGGAGGGAAACTTTTAGT 57.470 40.909 0.00 0.00 0.00 2.24
265 266 4.094830 TGTGGGAGGGAAACTTTTAGTC 57.905 45.455 0.00 0.00 0.00 2.59
266 267 3.720002 TGTGGGAGGGAAACTTTTAGTCT 59.280 43.478 0.00 0.00 0.00 3.24
267 268 4.909088 TGTGGGAGGGAAACTTTTAGTCTA 59.091 41.667 0.00 0.00 0.00 2.59
268 269 5.550403 TGTGGGAGGGAAACTTTTAGTCTAT 59.450 40.000 0.00 0.00 0.00 1.98
269 270 5.880887 GTGGGAGGGAAACTTTTAGTCTATG 59.119 44.000 0.00 0.00 0.00 2.23
270 271 5.045140 TGGGAGGGAAACTTTTAGTCTATGG 60.045 44.000 0.00 0.00 0.00 2.74
271 272 5.437946 GGAGGGAAACTTTTAGTCTATGGG 58.562 45.833 0.00 0.00 0.00 4.00
272 273 5.045066 GGAGGGAAACTTTTAGTCTATGGGT 60.045 44.000 0.00 0.00 0.00 4.51
273 274 5.816682 AGGGAAACTTTTAGTCTATGGGTG 58.183 41.667 0.00 0.00 0.00 4.61
274 275 5.312443 AGGGAAACTTTTAGTCTATGGGTGT 59.688 40.000 0.00 0.00 0.00 4.16
275 276 6.502863 AGGGAAACTTTTAGTCTATGGGTGTA 59.497 38.462 0.00 0.00 0.00 2.90
276 277 7.184022 AGGGAAACTTTTAGTCTATGGGTGTAT 59.816 37.037 0.00 0.00 0.00 2.29
277 278 7.498239 GGGAAACTTTTAGTCTATGGGTGTATC 59.502 40.741 0.00 0.00 0.00 2.24
278 279 8.265764 GGAAACTTTTAGTCTATGGGTGTATCT 58.734 37.037 0.00 0.00 0.00 1.98
281 282 8.834004 ACTTTTAGTCTATGGGTGTATCTACA 57.166 34.615 0.00 0.00 0.00 2.74
282 283 9.435570 ACTTTTAGTCTATGGGTGTATCTACAT 57.564 33.333 0.00 0.00 38.63 2.29
283 284 9.915629 CTTTTAGTCTATGGGTGTATCTACATC 57.084 37.037 0.00 0.00 38.63 3.06
367 368 9.883142 TTCAAAATAAACTTGACCTTTCATTGT 57.117 25.926 0.00 0.00 32.61 2.71
372 373 9.965824 AATAAACTTGACCTTTCATTGTACTTG 57.034 29.630 0.00 0.00 0.00 3.16
373 374 7.404671 AAACTTGACCTTTCATTGTACTTGT 57.595 32.000 0.00 0.00 0.00 3.16
374 375 6.619801 ACTTGACCTTTCATTGTACTTGTC 57.380 37.500 0.00 0.00 0.00 3.18
375 376 6.119536 ACTTGACCTTTCATTGTACTTGTCA 58.880 36.000 0.00 0.00 0.00 3.58
376 377 6.260936 ACTTGACCTTTCATTGTACTTGTCAG 59.739 38.462 0.00 0.00 33.54 3.51
377 378 5.924356 TGACCTTTCATTGTACTTGTCAGA 58.076 37.500 0.00 0.00 0.00 3.27
378 379 6.353323 TGACCTTTCATTGTACTTGTCAGAA 58.647 36.000 0.00 0.00 0.00 3.02
379 380 6.826231 TGACCTTTCATTGTACTTGTCAGAAA 59.174 34.615 0.00 0.00 0.00 2.52
380 381 7.338196 TGACCTTTCATTGTACTTGTCAGAAAA 59.662 33.333 0.00 0.00 0.00 2.29
381 382 8.062065 ACCTTTCATTGTACTTGTCAGAAAAA 57.938 30.769 0.00 0.00 0.00 1.94
382 383 8.695456 ACCTTTCATTGTACTTGTCAGAAAAAT 58.305 29.630 0.00 0.00 0.00 1.82
383 384 9.533253 CCTTTCATTGTACTTGTCAGAAAAATT 57.467 29.630 0.00 0.00 0.00 1.82
385 386 9.528018 TTTCATTGTACTTGTCAGAAAAATTCC 57.472 29.630 0.00 0.00 0.00 3.01
386 387 8.231692 TCATTGTACTTGTCAGAAAAATTCCA 57.768 30.769 0.00 0.00 0.00 3.53
387 388 8.134895 TCATTGTACTTGTCAGAAAAATTCCAC 58.865 33.333 0.00 0.00 0.00 4.02
388 389 7.397892 TTGTACTTGTCAGAAAAATTCCACA 57.602 32.000 0.00 0.00 0.00 4.17
389 390 7.397892 TGTACTTGTCAGAAAAATTCCACAA 57.602 32.000 0.00 5.56 33.99 3.33
390 391 7.831753 TGTACTTGTCAGAAAAATTCCACAAA 58.168 30.769 0.00 0.00 34.44 2.83
391 392 8.307483 TGTACTTGTCAGAAAAATTCCACAAAA 58.693 29.630 0.00 0.00 34.44 2.44
392 393 9.145865 GTACTTGTCAGAAAAATTCCACAAAAA 57.854 29.630 6.65 0.00 34.44 1.94
393 394 8.255394 ACTTGTCAGAAAAATTCCACAAAAAG 57.745 30.769 6.65 0.00 34.44 2.27
394 395 8.093927 ACTTGTCAGAAAAATTCCACAAAAAGA 58.906 29.630 6.65 0.00 34.44 2.52
395 396 8.839310 TTGTCAGAAAAATTCCACAAAAAGAA 57.161 26.923 3.84 0.00 32.83 2.52
396 397 8.839310 TGTCAGAAAAATTCCACAAAAAGAAA 57.161 26.923 0.00 0.00 0.00 2.52
397 398 9.277783 TGTCAGAAAAATTCCACAAAAAGAAAA 57.722 25.926 0.00 0.00 0.00 2.29
398 399 9.541724 GTCAGAAAAATTCCACAAAAAGAAAAC 57.458 29.630 0.00 0.00 0.00 2.43
399 400 8.726068 TCAGAAAAATTCCACAAAAAGAAAACC 58.274 29.630 0.00 0.00 0.00 3.27
400 401 8.510505 CAGAAAAATTCCACAAAAAGAAAACCA 58.489 29.630 0.00 0.00 0.00 3.67
401 402 8.729756 AGAAAAATTCCACAAAAAGAAAACCAG 58.270 29.630 0.00 0.00 0.00 4.00
402 403 6.435430 AAATTCCACAAAAAGAAAACCAGC 57.565 33.333 0.00 0.00 0.00 4.85
403 404 3.535280 TCCACAAAAAGAAAACCAGCC 57.465 42.857 0.00 0.00 0.00 4.85
404 405 3.103742 TCCACAAAAAGAAAACCAGCCT 58.896 40.909 0.00 0.00 0.00 4.58
405 406 3.517500 TCCACAAAAAGAAAACCAGCCTT 59.482 39.130 0.00 0.00 0.00 4.35
406 407 4.019771 TCCACAAAAAGAAAACCAGCCTTT 60.020 37.500 0.00 0.00 0.00 3.11
407 408 4.094739 CCACAAAAAGAAAACCAGCCTTTG 59.905 41.667 0.00 0.00 31.30 2.77
408 409 4.934602 CACAAAAAGAAAACCAGCCTTTGA 59.065 37.500 0.00 0.00 31.30 2.69
409 410 4.935205 ACAAAAAGAAAACCAGCCTTTGAC 59.065 37.500 0.00 0.00 31.30 3.18
410 411 5.178061 CAAAAAGAAAACCAGCCTTTGACT 58.822 37.500 0.00 0.00 31.30 3.41
411 412 5.420725 AAAAGAAAACCAGCCTTTGACTT 57.579 34.783 0.00 0.00 31.30 3.01
412 413 4.655762 AAGAAAACCAGCCTTTGACTTC 57.344 40.909 0.00 0.00 0.00 3.01
413 414 3.903467 AGAAAACCAGCCTTTGACTTCT 58.097 40.909 0.00 0.00 0.00 2.85
414 415 4.281657 AGAAAACCAGCCTTTGACTTCTT 58.718 39.130 0.00 0.00 0.00 2.52
415 416 4.711846 AGAAAACCAGCCTTTGACTTCTTT 59.288 37.500 0.00 0.00 0.00 2.52
416 417 5.187772 AGAAAACCAGCCTTTGACTTCTTTT 59.812 36.000 0.00 0.00 0.00 2.27
417 418 4.655762 AACCAGCCTTTGACTTCTTTTC 57.344 40.909 0.00 0.00 0.00 2.29
418 419 3.631250 ACCAGCCTTTGACTTCTTTTCA 58.369 40.909 0.00 0.00 0.00 2.69
419 420 4.023291 ACCAGCCTTTGACTTCTTTTCAA 58.977 39.130 0.00 0.00 0.00 2.69
420 421 4.466015 ACCAGCCTTTGACTTCTTTTCAAA 59.534 37.500 0.00 0.00 39.99 2.69
421 422 5.046663 ACCAGCCTTTGACTTCTTTTCAAAA 60.047 36.000 0.00 0.00 41.32 2.44
422 423 5.874261 CCAGCCTTTGACTTCTTTTCAAAAA 59.126 36.000 0.00 0.00 41.32 1.94
452 453 5.606348 TTTTTGGCCAAAGTAGTGTGAAT 57.394 34.783 28.79 0.00 0.00 2.57
453 454 4.582701 TTTGGCCAAAGTAGTGTGAATG 57.417 40.909 27.13 0.00 0.00 2.67
454 455 2.513753 TGGCCAAAGTAGTGTGAATGG 58.486 47.619 0.61 0.00 0.00 3.16
455 456 2.158534 TGGCCAAAGTAGTGTGAATGGT 60.159 45.455 0.61 0.00 0.00 3.55
456 457 2.228822 GGCCAAAGTAGTGTGAATGGTG 59.771 50.000 0.00 0.00 0.00 4.17
457 458 3.146066 GCCAAAGTAGTGTGAATGGTGA 58.854 45.455 0.00 0.00 0.00 4.02
458 459 3.058224 GCCAAAGTAGTGTGAATGGTGAC 60.058 47.826 0.00 0.00 0.00 3.67
459 460 3.502211 CCAAAGTAGTGTGAATGGTGACC 59.498 47.826 0.00 0.00 0.00 4.02
460 461 4.389374 CAAAGTAGTGTGAATGGTGACCT 58.611 43.478 2.11 0.00 0.00 3.85
461 462 3.685139 AGTAGTGTGAATGGTGACCTG 57.315 47.619 2.11 0.00 0.00 4.00
462 463 2.972713 AGTAGTGTGAATGGTGACCTGT 59.027 45.455 2.11 0.00 0.00 4.00
463 464 4.157246 AGTAGTGTGAATGGTGACCTGTA 58.843 43.478 2.11 0.00 0.00 2.74
464 465 4.591498 AGTAGTGTGAATGGTGACCTGTAA 59.409 41.667 2.11 0.00 0.00 2.41
465 466 4.640771 AGTGTGAATGGTGACCTGTAAT 57.359 40.909 2.11 0.00 0.00 1.89
466 467 5.755409 AGTGTGAATGGTGACCTGTAATA 57.245 39.130 2.11 0.00 0.00 0.98
467 468 6.121776 AGTGTGAATGGTGACCTGTAATAA 57.878 37.500 2.11 0.00 0.00 1.40
468 469 5.938125 AGTGTGAATGGTGACCTGTAATAAC 59.062 40.000 2.11 0.00 0.00 1.89
469 470 5.703592 GTGTGAATGGTGACCTGTAATAACA 59.296 40.000 2.11 0.00 0.00 2.41
470 471 6.205853 GTGTGAATGGTGACCTGTAATAACAA 59.794 38.462 2.11 0.00 34.49 2.83
471 472 6.773200 TGTGAATGGTGACCTGTAATAACAAA 59.227 34.615 2.11 0.00 34.49 2.83
472 473 7.450014 TGTGAATGGTGACCTGTAATAACAAAT 59.550 33.333 2.11 0.00 34.49 2.32
473 474 8.952278 GTGAATGGTGACCTGTAATAACAAATA 58.048 33.333 2.11 0.00 34.49 1.40
474 475 9.521841 TGAATGGTGACCTGTAATAACAAATAA 57.478 29.630 2.11 0.00 34.49 1.40
506 507 4.695217 TTTTTGCTCTGAAGTCAACGTT 57.305 36.364 0.00 0.00 0.00 3.99
507 508 3.673746 TTTGCTCTGAAGTCAACGTTG 57.326 42.857 22.35 22.35 0.00 4.10
508 509 1.581934 TGCTCTGAAGTCAACGTTGG 58.418 50.000 27.02 10.74 0.00 3.77
509 510 1.134521 TGCTCTGAAGTCAACGTTGGT 60.135 47.619 27.02 12.89 0.00 3.67
510 511 1.940613 GCTCTGAAGTCAACGTTGGTT 59.059 47.619 27.02 20.09 36.63 3.67
511 512 2.354821 GCTCTGAAGTCAACGTTGGTTT 59.645 45.455 27.02 20.33 32.98 3.27
512 513 3.181500 GCTCTGAAGTCAACGTTGGTTTT 60.181 43.478 27.02 18.03 32.98 2.43
513 514 4.674362 GCTCTGAAGTCAACGTTGGTTTTT 60.674 41.667 27.02 15.76 32.98 1.94
556 557 8.904099 ATACTAGTGCAAAAGTAAGTCAAGTT 57.096 30.769 5.39 0.00 32.24 2.66
557 558 7.625828 ACTAGTGCAAAAGTAAGTCAAGTTT 57.374 32.000 0.00 0.00 0.00 2.66
558 559 7.694886 ACTAGTGCAAAAGTAAGTCAAGTTTC 58.305 34.615 0.00 0.00 0.00 2.78
559 560 6.759497 AGTGCAAAAGTAAGTCAAGTTTCT 57.241 33.333 0.00 0.00 0.00 2.52
560 561 7.158099 AGTGCAAAAGTAAGTCAAGTTTCTT 57.842 32.000 0.00 0.00 0.00 2.52
561 562 7.251281 AGTGCAAAAGTAAGTCAAGTTTCTTC 58.749 34.615 0.00 0.00 0.00 2.87
562 563 7.121315 AGTGCAAAAGTAAGTCAAGTTTCTTCT 59.879 33.333 0.00 0.00 0.00 2.85
563 564 8.395633 GTGCAAAAGTAAGTCAAGTTTCTTCTA 58.604 33.333 0.00 0.00 0.00 2.10
564 565 8.952278 TGCAAAAGTAAGTCAAGTTTCTTCTAA 58.048 29.630 0.00 0.00 0.00 2.10
565 566 9.783256 GCAAAAGTAAGTCAAGTTTCTTCTAAA 57.217 29.630 0.00 0.00 0.00 1.85
645 646 4.901868 GGTGTATCTACAACCAAGAACCA 58.098 43.478 0.00 0.00 37.94 3.67
646 647 5.310451 GGTGTATCTACAACCAAGAACCAA 58.690 41.667 0.00 0.00 37.94 3.67
647 648 5.766174 GGTGTATCTACAACCAAGAACCAAA 59.234 40.000 0.00 0.00 37.94 3.28
648 649 6.072673 GGTGTATCTACAACCAAGAACCAAAG 60.073 42.308 0.00 0.00 37.94 2.77
649 650 6.485648 GTGTATCTACAACCAAGAACCAAAGT 59.514 38.462 0.00 0.00 38.04 2.66
650 651 6.485313 TGTATCTACAACCAAGAACCAAAGTG 59.515 38.462 0.00 0.00 32.40 3.16
651 652 2.959507 ACAACCAAGAACCAAAGTGC 57.040 45.000 0.00 0.00 0.00 4.40
652 653 2.175202 ACAACCAAGAACCAAAGTGCA 58.825 42.857 0.00 0.00 0.00 4.57
653 654 2.765699 ACAACCAAGAACCAAAGTGCAT 59.234 40.909 0.00 0.00 0.00 3.96
654 655 3.197549 ACAACCAAGAACCAAAGTGCATT 59.802 39.130 0.00 0.00 0.00 3.56
655 656 4.190772 CAACCAAGAACCAAAGTGCATTT 58.809 39.130 0.00 0.00 0.00 2.32
656 657 4.058721 ACCAAGAACCAAAGTGCATTTC 57.941 40.909 0.00 0.00 0.00 2.17
657 658 3.181466 ACCAAGAACCAAAGTGCATTTCC 60.181 43.478 0.00 0.00 0.00 3.13
658 659 3.392882 CAAGAACCAAAGTGCATTTCCC 58.607 45.455 0.00 0.00 0.00 3.97
661 662 4.677182 AGAACCAAAGTGCATTTCCCTAT 58.323 39.130 0.00 0.00 0.00 2.57
666 667 4.931002 CCAAAGTGCATTTCCCTATGTTTG 59.069 41.667 0.00 0.00 0.00 2.93
687 688 1.906574 TGCCCATTCTCTACGTTTCCT 59.093 47.619 0.00 0.00 0.00 3.36
742 753 7.429636 AAAATGATTCTGTGGAGCATTTTTG 57.570 32.000 8.47 0.00 40.74 2.44
762 773 1.745087 GGATAAGTGTGTGTGCCCATG 59.255 52.381 0.00 0.00 0.00 3.66
772 783 2.226330 GTGTGCCCATGTTGTCAAGTA 58.774 47.619 0.00 0.00 0.00 2.24
784 796 6.025749 TGTTGTCAAGTAGTCTATCCACAG 57.974 41.667 0.00 0.00 0.00 3.66
852 881 3.577649 ATACACTGACAACTCCAGACG 57.422 47.619 0.00 0.00 35.69 4.18
858 887 2.100879 GACAACTCCAGACGGCCACT 62.101 60.000 2.24 0.00 0.00 4.00
878 907 3.660111 GGGCGTGCCACTCAACAC 61.660 66.667 13.76 0.00 37.98 3.32
943 976 4.664677 GACAGACAGCGGCCGTGT 62.665 66.667 28.70 27.25 0.00 4.49
1057 1107 4.148825 GCATGGCCTCGTCCGTCT 62.149 66.667 3.32 0.00 0.00 4.18
1059 1109 2.362503 ATGGCCTCGTCCGTCTCA 60.363 61.111 3.32 0.00 0.00 3.27
1146 1196 1.831652 CTGGCCTTGACTTCCTCCGT 61.832 60.000 3.32 0.00 0.00 4.69
1262 1312 3.691342 CCGTGCTCCCGTTCCTCA 61.691 66.667 0.00 0.00 0.00 3.86
1385 1444 1.748403 GTCATAGCCGCCATCCTCA 59.252 57.895 0.00 0.00 0.00 3.86
1395 1454 0.036022 GCCATCCTCAGCATCTACCC 59.964 60.000 0.00 0.00 0.00 3.69
1403 1462 2.427453 CTCAGCATCTACCCGTACAACT 59.573 50.000 0.00 0.00 0.00 3.16
2027 2133 7.648510 CGGACTAACTAGCAGTAGGAAAATAAG 59.351 40.741 0.00 0.00 0.00 1.73
2076 2182 4.794169 AGTAACCAAACATGATTGCGTTC 58.206 39.130 18.72 13.32 31.10 3.95
2096 2229 6.913673 GCGTTCTCTTGTTTACCATGTTAAAA 59.086 34.615 0.00 0.00 0.00 1.52
2163 2296 6.828785 AGAAAAATGTAAAGCACCGAGGATAT 59.171 34.615 0.00 0.00 0.00 1.63
2164 2297 7.990886 AGAAAAATGTAAAGCACCGAGGATATA 59.009 33.333 0.00 0.00 0.00 0.86
2310 3215 0.543410 TGGGGCTCGTCCTCAAACTA 60.543 55.000 0.00 0.00 44.01 2.24
2386 3294 4.941873 GCTTTAAACCATATATAGGCCGCT 59.058 41.667 0.00 0.00 0.00 5.52
2397 3305 1.342074 TAGGCCGCTCTGCTATTCAT 58.658 50.000 0.00 0.00 0.00 2.57
2401 3309 2.149578 GCCGCTCTGCTATTCATGAAT 58.850 47.619 23.75 23.75 34.93 2.57
2409 3317 7.169813 CGCTCTGCTATTCATGAATACAAACTA 59.830 37.037 21.67 4.58 32.50 2.24
2459 3393 4.018141 AGAAATCCAACCATCTCACATCCA 60.018 41.667 0.00 0.00 0.00 3.41
2464 3398 0.250234 ACCATCTCACATCCACACCG 59.750 55.000 0.00 0.00 0.00 4.94
2487 3421 4.023193 GGTGACAGTTAAGATGTGTTTGGG 60.023 45.833 0.00 0.00 0.00 4.12
2662 3776 0.101399 TGCAACGGCGTGTTTCAAAT 59.899 45.000 15.70 0.00 45.35 2.32
2677 3791 9.782028 CGTGTTTCAAATTATGTTCAGAAATTG 57.218 29.630 2.72 2.72 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.458573 AACCAATTAGAAGTTGTATGTCACAA 57.541 30.769 0.00 0.00 44.97 3.33
13 14 9.214957 CTAACCAATTAGAAGTTGTATGTCACA 57.785 33.333 0.00 0.00 40.38 3.58
14 15 9.216117 ACTAACCAATTAGAAGTTGTATGTCAC 57.784 33.333 1.17 0.00 40.38 3.67
15 16 9.431887 GACTAACCAATTAGAAGTTGTATGTCA 57.568 33.333 1.17 0.00 40.38 3.58
17 18 9.787435 TTGACTAACCAATTAGAAGTTGTATGT 57.213 29.630 1.17 0.00 40.38 2.29
21 22 9.574516 AGATTTGACTAACCAATTAGAAGTTGT 57.425 29.630 1.17 0.00 40.38 3.32
22 23 9.831737 CAGATTTGACTAACCAATTAGAAGTTG 57.168 33.333 1.17 0.00 40.38 3.16
23 24 8.515414 GCAGATTTGACTAACCAATTAGAAGTT 58.485 33.333 1.17 0.00 40.38 2.66
24 25 7.148407 CGCAGATTTGACTAACCAATTAGAAGT 60.148 37.037 1.17 0.00 40.38 3.01
25 26 7.182761 CGCAGATTTGACTAACCAATTAGAAG 58.817 38.462 1.17 0.00 40.38 2.85
26 27 6.093495 CCGCAGATTTGACTAACCAATTAGAA 59.907 38.462 1.17 0.00 40.38 2.10
27 28 5.584649 CCGCAGATTTGACTAACCAATTAGA 59.415 40.000 1.17 0.00 40.38 2.10
28 29 5.354234 ACCGCAGATTTGACTAACCAATTAG 59.646 40.000 0.00 0.00 43.14 1.73
29 30 5.250200 ACCGCAGATTTGACTAACCAATTA 58.750 37.500 0.00 0.00 0.00 1.40
30 31 4.079253 ACCGCAGATTTGACTAACCAATT 58.921 39.130 0.00 0.00 0.00 2.32
31 32 3.686016 ACCGCAGATTTGACTAACCAAT 58.314 40.909 0.00 0.00 0.00 3.16
32 33 3.071479 GACCGCAGATTTGACTAACCAA 58.929 45.455 0.00 0.00 0.00 3.67
33 34 2.037902 TGACCGCAGATTTGACTAACCA 59.962 45.455 0.00 0.00 0.00 3.67
34 35 2.695359 TGACCGCAGATTTGACTAACC 58.305 47.619 0.00 0.00 0.00 2.85
35 36 4.213482 ACTTTGACCGCAGATTTGACTAAC 59.787 41.667 0.00 0.00 0.00 2.34
36 37 4.385825 ACTTTGACCGCAGATTTGACTAA 58.614 39.130 0.00 0.00 0.00 2.24
37 38 4.002906 ACTTTGACCGCAGATTTGACTA 57.997 40.909 0.00 0.00 0.00 2.59
38 39 2.851195 ACTTTGACCGCAGATTTGACT 58.149 42.857 0.00 0.00 0.00 3.41
39 40 3.300009 CAACTTTGACCGCAGATTTGAC 58.700 45.455 0.00 0.00 0.00 3.18
40 41 2.287547 GCAACTTTGACCGCAGATTTGA 60.288 45.455 0.00 0.00 0.00 2.69
41 42 2.053627 GCAACTTTGACCGCAGATTTG 58.946 47.619 0.00 0.00 0.00 2.32
42 43 1.334960 CGCAACTTTGACCGCAGATTT 60.335 47.619 0.00 0.00 0.00 2.17
43 44 0.238289 CGCAACTTTGACCGCAGATT 59.762 50.000 0.00 0.00 0.00 2.40
44 45 1.868997 CGCAACTTTGACCGCAGAT 59.131 52.632 0.00 0.00 0.00 2.90
45 46 2.892334 GCGCAACTTTGACCGCAGA 61.892 57.895 0.30 0.00 45.21 4.26
46 47 2.427410 GCGCAACTTTGACCGCAG 60.427 61.111 0.30 0.00 45.21 5.18
48 49 2.725815 GTGCGCAACTTTGACCGC 60.726 61.111 14.00 6.93 45.99 5.68
49 50 0.524392 TTTGTGCGCAACTTTGACCG 60.524 50.000 14.00 0.00 33.82 4.79
50 51 1.634702 TTTTGTGCGCAACTTTGACC 58.365 45.000 14.00 0.00 33.82 4.02
51 52 3.794028 TGTATTTTGTGCGCAACTTTGAC 59.206 39.130 14.00 7.75 33.82 3.18
52 53 4.033990 TGTATTTTGTGCGCAACTTTGA 57.966 36.364 14.00 0.00 33.82 2.69
53 54 4.768659 TTGTATTTTGTGCGCAACTTTG 57.231 36.364 14.00 0.00 33.82 2.77
54 55 4.269844 CCTTTGTATTTTGTGCGCAACTTT 59.730 37.500 14.00 3.02 33.82 2.66
55 56 3.801594 CCTTTGTATTTTGTGCGCAACTT 59.198 39.130 14.00 5.65 33.82 2.66
56 57 3.380142 CCTTTGTATTTTGTGCGCAACT 58.620 40.909 14.00 5.84 33.82 3.16
57 58 2.474735 CCCTTTGTATTTTGTGCGCAAC 59.525 45.455 14.00 6.10 33.82 4.17
58 59 2.362397 TCCCTTTGTATTTTGTGCGCAA 59.638 40.909 14.00 9.01 0.00 4.85
59 60 1.957177 TCCCTTTGTATTTTGTGCGCA 59.043 42.857 5.66 5.66 0.00 6.09
60 61 2.715737 TCCCTTTGTATTTTGTGCGC 57.284 45.000 0.00 0.00 0.00 6.09
61 62 4.433186 TGATCCCTTTGTATTTTGTGCG 57.567 40.909 0.00 0.00 0.00 5.34
62 63 8.655970 GTTTATTGATCCCTTTGTATTTTGTGC 58.344 33.333 0.00 0.00 0.00 4.57
63 64 9.150348 GGTTTATTGATCCCTTTGTATTTTGTG 57.850 33.333 0.00 0.00 0.00 3.33
64 65 8.318412 GGGTTTATTGATCCCTTTGTATTTTGT 58.682 33.333 0.00 0.00 38.29 2.83
65 66 7.491048 CGGGTTTATTGATCCCTTTGTATTTTG 59.509 37.037 0.00 0.00 39.10 2.44
66 67 7.364320 CCGGGTTTATTGATCCCTTTGTATTTT 60.364 37.037 0.00 0.00 39.10 1.82
67 68 6.097696 CCGGGTTTATTGATCCCTTTGTATTT 59.902 38.462 0.00 0.00 39.10 1.40
68 69 5.596772 CCGGGTTTATTGATCCCTTTGTATT 59.403 40.000 0.00 0.00 39.10 1.89
69 70 5.103855 TCCGGGTTTATTGATCCCTTTGTAT 60.104 40.000 0.00 0.00 39.10 2.29
70 71 4.227754 TCCGGGTTTATTGATCCCTTTGTA 59.772 41.667 0.00 0.00 39.10 2.41
71 72 3.010808 TCCGGGTTTATTGATCCCTTTGT 59.989 43.478 0.00 0.00 39.10 2.83
72 73 3.380320 GTCCGGGTTTATTGATCCCTTTG 59.620 47.826 0.00 0.00 39.10 2.77
73 74 3.628008 GTCCGGGTTTATTGATCCCTTT 58.372 45.455 0.00 0.00 39.10 3.11
74 75 2.420967 CGTCCGGGTTTATTGATCCCTT 60.421 50.000 0.00 0.00 39.10 3.95
75 76 1.140252 CGTCCGGGTTTATTGATCCCT 59.860 52.381 0.00 0.00 39.10 4.20
76 77 1.589803 CGTCCGGGTTTATTGATCCC 58.410 55.000 0.00 0.00 37.98 3.85
77 78 1.139455 TCCGTCCGGGTTTATTGATCC 59.861 52.381 0.00 0.00 37.00 3.36
78 79 2.480845 CTCCGTCCGGGTTTATTGATC 58.519 52.381 0.00 0.00 37.00 2.92
79 80 1.140252 CCTCCGTCCGGGTTTATTGAT 59.860 52.381 0.00 0.00 37.00 2.57
80 81 0.538118 CCTCCGTCCGGGTTTATTGA 59.462 55.000 0.00 0.00 37.00 2.57
81 82 0.251073 ACCTCCGTCCGGGTTTATTG 59.749 55.000 0.00 0.00 37.00 1.90
82 83 1.864669 TACCTCCGTCCGGGTTTATT 58.135 50.000 0.00 0.00 37.07 1.40
83 84 1.864669 TTACCTCCGTCCGGGTTTAT 58.135 50.000 0.00 0.00 37.07 1.40
84 85 1.864669 ATTACCTCCGTCCGGGTTTA 58.135 50.000 0.00 0.00 37.07 2.01
85 86 1.864669 TATTACCTCCGTCCGGGTTT 58.135 50.000 0.00 0.00 37.07 3.27
86 87 1.864669 TTATTACCTCCGTCCGGGTT 58.135 50.000 0.00 0.00 37.07 4.11
87 88 1.482182 GTTTATTACCTCCGTCCGGGT 59.518 52.381 0.00 0.00 39.40 5.28
88 89 1.202568 GGTTTATTACCTCCGTCCGGG 60.203 57.143 0.00 0.00 44.10 5.73
89 90 1.202568 GGGTTTATTACCTCCGTCCGG 60.203 57.143 0.00 0.00 46.86 5.14
90 91 1.202568 GGGGTTTATTACCTCCGTCCG 60.203 57.143 0.00 0.00 46.86 4.79
91 92 2.627515 GGGGTTTATTACCTCCGTCC 57.372 55.000 0.00 0.00 46.86 4.79
109 110 3.357079 GTGCAACGAGCCCACTGG 61.357 66.667 0.00 0.00 44.83 4.00
110 111 3.357079 GGTGCAACGAGCCCACTG 61.357 66.667 0.00 0.00 44.83 3.66
111 112 4.988598 CGGTGCAACGAGCCCACT 62.989 66.667 22.23 0.00 44.83 4.00
112 113 3.869473 TACGGTGCAACGAGCCCAC 62.869 63.158 34.07 0.00 44.83 4.61
113 114 2.661840 TTTACGGTGCAACGAGCCCA 62.662 55.000 34.07 6.66 44.83 5.36
114 115 1.508808 TTTTACGGTGCAACGAGCCC 61.509 55.000 34.07 4.63 44.83 5.19
115 116 0.308376 TTTTTACGGTGCAACGAGCC 59.692 50.000 34.07 5.52 44.83 4.70
116 117 3.829754 TTTTTACGGTGCAACGAGC 57.170 47.368 34.07 0.00 45.96 5.03
131 132 9.178758 GAGGGAGTATATCAACTCAACATTTTT 57.821 33.333 7.73 0.00 46.40 1.94
132 133 7.775561 GGAGGGAGTATATCAACTCAACATTTT 59.224 37.037 7.73 0.00 46.40 1.82
133 134 7.283329 GGAGGGAGTATATCAACTCAACATTT 58.717 38.462 7.73 0.00 46.40 2.32
134 135 6.463049 CGGAGGGAGTATATCAACTCAACATT 60.463 42.308 7.73 0.00 46.40 2.71
135 136 5.011125 CGGAGGGAGTATATCAACTCAACAT 59.989 44.000 7.73 0.00 46.40 2.71
136 137 4.341235 CGGAGGGAGTATATCAACTCAACA 59.659 45.833 7.73 0.00 46.40 3.33
137 138 4.341520 ACGGAGGGAGTATATCAACTCAAC 59.658 45.833 7.73 1.26 46.40 3.18
138 139 4.543689 ACGGAGGGAGTATATCAACTCAA 58.456 43.478 7.73 0.00 46.40 3.02
139 140 4.180377 ACGGAGGGAGTATATCAACTCA 57.820 45.455 7.73 0.00 46.40 3.41
140 141 5.068723 TGAAACGGAGGGAGTATATCAACTC 59.931 44.000 0.00 0.00 44.31 3.01
141 142 4.960469 TGAAACGGAGGGAGTATATCAACT 59.040 41.667 0.00 0.00 0.00 3.16
142 143 5.272283 TGAAACGGAGGGAGTATATCAAC 57.728 43.478 0.00 0.00 0.00 3.18
143 144 7.289317 ACTTATGAAACGGAGGGAGTATATCAA 59.711 37.037 0.00 0.00 0.00 2.57
144 145 6.781014 ACTTATGAAACGGAGGGAGTATATCA 59.219 38.462 0.00 0.00 0.00 2.15
145 146 7.229581 ACTTATGAAACGGAGGGAGTATATC 57.770 40.000 0.00 0.00 0.00 1.63
146 147 8.896722 ATACTTATGAAACGGAGGGAGTATAT 57.103 34.615 0.00 0.00 29.90 0.86
147 148 9.812347 TTATACTTATGAAACGGAGGGAGTATA 57.188 33.333 0.00 0.00 32.90 1.47
148 149 8.716674 TTATACTTATGAAACGGAGGGAGTAT 57.283 34.615 0.00 0.00 34.51 2.12
149 150 8.000709 TCTTATACTTATGAAACGGAGGGAGTA 58.999 37.037 0.00 0.00 0.00 2.59
150 151 6.837568 TCTTATACTTATGAAACGGAGGGAGT 59.162 38.462 0.00 0.00 0.00 3.85
151 152 7.014422 ACTCTTATACTTATGAAACGGAGGGAG 59.986 40.741 0.00 0.00 0.00 4.30
152 153 6.837568 ACTCTTATACTTATGAAACGGAGGGA 59.162 38.462 0.00 0.00 0.00 4.20
153 154 6.924060 CACTCTTATACTTATGAAACGGAGGG 59.076 42.308 0.00 0.00 0.00 4.30
154 155 7.490000 ACACTCTTATACTTATGAAACGGAGG 58.510 38.462 0.00 0.00 0.00 4.30
155 156 8.928270 AACACTCTTATACTTATGAAACGGAG 57.072 34.615 0.00 0.00 0.00 4.63
156 157 9.715121 AAAACACTCTTATACTTATGAAACGGA 57.285 29.630 0.00 0.00 0.00 4.69
177 178 5.049060 CGTCCCATCATTAGTGTCAAAAACA 60.049 40.000 0.00 0.00 34.78 2.83
178 179 5.390613 CGTCCCATCATTAGTGTCAAAAAC 58.609 41.667 0.00 0.00 0.00 2.43
179 180 4.457603 CCGTCCCATCATTAGTGTCAAAAA 59.542 41.667 0.00 0.00 0.00 1.94
180 181 4.006989 CCGTCCCATCATTAGTGTCAAAA 58.993 43.478 0.00 0.00 0.00 2.44
181 182 3.262151 TCCGTCCCATCATTAGTGTCAAA 59.738 43.478 0.00 0.00 0.00 2.69
182 183 2.835156 TCCGTCCCATCATTAGTGTCAA 59.165 45.455 0.00 0.00 0.00 3.18
183 184 2.430694 CTCCGTCCCATCATTAGTGTCA 59.569 50.000 0.00 0.00 0.00 3.58
184 185 2.224066 CCTCCGTCCCATCATTAGTGTC 60.224 54.545 0.00 0.00 0.00 3.67
185 186 1.762957 CCTCCGTCCCATCATTAGTGT 59.237 52.381 0.00 0.00 0.00 3.55
186 187 1.070758 CCCTCCGTCCCATCATTAGTG 59.929 57.143 0.00 0.00 0.00 2.74
187 188 1.062428 TCCCTCCGTCCCATCATTAGT 60.062 52.381 0.00 0.00 0.00 2.24
188 189 1.620819 CTCCCTCCGTCCCATCATTAG 59.379 57.143 0.00 0.00 0.00 1.73
189 190 1.062428 ACTCCCTCCGTCCCATCATTA 60.062 52.381 0.00 0.00 0.00 1.90
190 191 0.326618 ACTCCCTCCGTCCCATCATT 60.327 55.000 0.00 0.00 0.00 2.57
191 192 0.561184 TACTCCCTCCGTCCCATCAT 59.439 55.000 0.00 0.00 0.00 2.45
192 193 0.396695 GTACTCCCTCCGTCCCATCA 60.397 60.000 0.00 0.00 0.00 3.07
193 194 0.106116 AGTACTCCCTCCGTCCCATC 60.106 60.000 0.00 0.00 0.00 3.51
194 195 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
195 196 1.133575 CATAGTACTCCCTCCGTCCCA 60.134 57.143 0.00 0.00 0.00 4.37
196 197 1.133544 ACATAGTACTCCCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
197 198 2.361643 ACATAGTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
198 199 3.698040 TGAAACATAGTACTCCCTCCGTC 59.302 47.826 0.00 0.00 0.00 4.79
199 200 3.705051 TGAAACATAGTACTCCCTCCGT 58.295 45.455 0.00 0.00 0.00 4.69
200 201 4.730949 TTGAAACATAGTACTCCCTCCG 57.269 45.455 0.00 0.00 0.00 4.63
201 202 8.483758 TCTTTATTGAAACATAGTACTCCCTCC 58.516 37.037 0.00 0.00 0.00 4.30
213 214 9.927668 CACCCTTACAAATCTTTATTGAAACAT 57.072 29.630 0.00 0.00 0.00 2.71
214 215 8.919145 ACACCCTTACAAATCTTTATTGAAACA 58.081 29.630 0.00 0.00 0.00 2.83
215 216 9.191995 CACACCCTTACAAATCTTTATTGAAAC 57.808 33.333 0.00 0.00 0.00 2.78
216 217 8.919145 ACACACCCTTACAAATCTTTATTGAAA 58.081 29.630 0.00 0.00 0.00 2.69
217 218 8.472007 ACACACCCTTACAAATCTTTATTGAA 57.528 30.769 0.00 0.00 0.00 2.69
218 219 8.472007 AACACACCCTTACAAATCTTTATTGA 57.528 30.769 0.00 0.00 0.00 2.57
219 220 8.977505 CAAACACACCCTTACAAATCTTTATTG 58.022 33.333 0.00 0.00 0.00 1.90
220 221 8.700973 ACAAACACACCCTTACAAATCTTTATT 58.299 29.630 0.00 0.00 0.00 1.40
221 222 8.141268 CACAAACACACCCTTACAAATCTTTAT 58.859 33.333 0.00 0.00 0.00 1.40
222 223 7.416890 CCACAAACACACCCTTACAAATCTTTA 60.417 37.037 0.00 0.00 0.00 1.85
223 224 6.337356 CACAAACACACCCTTACAAATCTTT 58.663 36.000 0.00 0.00 0.00 2.52
224 225 5.163457 CCACAAACACACCCTTACAAATCTT 60.163 40.000 0.00 0.00 0.00 2.40
225 226 4.340950 CCACAAACACACCCTTACAAATCT 59.659 41.667 0.00 0.00 0.00 2.40
226 227 4.500716 CCCACAAACACACCCTTACAAATC 60.501 45.833 0.00 0.00 0.00 2.17
227 228 3.386402 CCCACAAACACACCCTTACAAAT 59.614 43.478 0.00 0.00 0.00 2.32
228 229 2.761208 CCCACAAACACACCCTTACAAA 59.239 45.455 0.00 0.00 0.00 2.83
229 230 2.025226 TCCCACAAACACACCCTTACAA 60.025 45.455 0.00 0.00 0.00 2.41
230 231 1.564818 TCCCACAAACACACCCTTACA 59.435 47.619 0.00 0.00 0.00 2.41
231 232 2.227194 CTCCCACAAACACACCCTTAC 58.773 52.381 0.00 0.00 0.00 2.34
232 233 1.144093 CCTCCCACAAACACACCCTTA 59.856 52.381 0.00 0.00 0.00 2.69
233 234 0.106217 CCTCCCACAAACACACCCTT 60.106 55.000 0.00 0.00 0.00 3.95
234 235 1.536676 CCTCCCACAAACACACCCT 59.463 57.895 0.00 0.00 0.00 4.34
235 236 1.530655 CCCTCCCACAAACACACCC 60.531 63.158 0.00 0.00 0.00 4.61
236 237 0.106419 TTCCCTCCCACAAACACACC 60.106 55.000 0.00 0.00 0.00 4.16
237 238 1.407618 GTTTCCCTCCCACAAACACAC 59.592 52.381 0.00 0.00 31.51 3.82
238 239 1.286553 AGTTTCCCTCCCACAAACACA 59.713 47.619 0.00 0.00 33.26 3.72
239 240 2.067365 AGTTTCCCTCCCACAAACAC 57.933 50.000 0.00 0.00 33.26 3.32
240 241 2.838637 AAGTTTCCCTCCCACAAACA 57.161 45.000 0.00 0.00 33.26 2.83
241 242 4.647853 ACTAAAAGTTTCCCTCCCACAAAC 59.352 41.667 0.00 0.00 0.00 2.93
242 243 4.874199 ACTAAAAGTTTCCCTCCCACAAA 58.126 39.130 0.00 0.00 0.00 2.83
243 244 4.167307 AGACTAAAAGTTTCCCTCCCACAA 59.833 41.667 0.00 0.00 0.00 3.33
244 245 3.720002 AGACTAAAAGTTTCCCTCCCACA 59.280 43.478 0.00 0.00 0.00 4.17
245 246 4.368565 AGACTAAAAGTTTCCCTCCCAC 57.631 45.455 0.00 0.00 0.00 4.61
246 247 5.045140 CCATAGACTAAAAGTTTCCCTCCCA 60.045 44.000 0.00 0.00 0.00 4.37
247 248 5.437946 CCATAGACTAAAAGTTTCCCTCCC 58.562 45.833 0.00 0.00 0.00 4.30
248 249 5.045066 ACCCATAGACTAAAAGTTTCCCTCC 60.045 44.000 0.00 0.00 0.00 4.30
249 250 5.880887 CACCCATAGACTAAAAGTTTCCCTC 59.119 44.000 0.00 0.00 0.00 4.30
250 251 5.312443 ACACCCATAGACTAAAAGTTTCCCT 59.688 40.000 0.00 0.00 0.00 4.20
251 252 5.567430 ACACCCATAGACTAAAAGTTTCCC 58.433 41.667 0.00 0.00 0.00 3.97
252 253 8.265764 AGATACACCCATAGACTAAAAGTTTCC 58.734 37.037 0.00 0.00 0.00 3.13
255 256 9.263446 TGTAGATACACCCATAGACTAAAAGTT 57.737 33.333 0.00 0.00 0.00 2.66
256 257 8.834004 TGTAGATACACCCATAGACTAAAAGT 57.166 34.615 0.00 0.00 0.00 2.66
257 258 9.915629 GATGTAGATACACCCATAGACTAAAAG 57.084 37.037 0.00 0.00 39.30 2.27
258 259 8.867097 GGATGTAGATACACCCATAGACTAAAA 58.133 37.037 0.00 0.00 39.80 1.52
259 260 8.232412 AGGATGTAGATACACCCATAGACTAAA 58.768 37.037 6.17 0.00 42.67 1.85
260 261 7.766628 AGGATGTAGATACACCCATAGACTAA 58.233 38.462 6.17 0.00 42.67 2.24
261 262 7.344599 AGGATGTAGATACACCCATAGACTA 57.655 40.000 6.17 0.00 42.67 2.59
262 263 6.220881 AGGATGTAGATACACCCATAGACT 57.779 41.667 6.17 0.00 42.67 3.24
263 264 9.869667 ATATAGGATGTAGATACACCCATAGAC 57.130 37.037 6.17 0.00 42.67 2.59
264 265 9.868160 CATATAGGATGTAGATACACCCATAGA 57.132 37.037 6.17 0.00 42.67 1.98
265 266 9.868160 TCATATAGGATGTAGATACACCCATAG 57.132 37.037 6.17 0.00 42.67 2.23
267 268 9.560860 TTTCATATAGGATGTAGATACACCCAT 57.439 33.333 6.17 1.01 42.67 4.00
268 269 8.966155 TTTCATATAGGATGTAGATACACCCA 57.034 34.615 6.17 0.00 42.67 4.51
341 342 9.883142 ACAATGAAAGGTCAAGTTTATTTTGAA 57.117 25.926 0.00 0.00 37.30 2.69
346 347 9.965824 CAAGTACAATGAAAGGTCAAGTTTATT 57.034 29.630 0.00 0.00 37.30 1.40
347 348 9.131791 ACAAGTACAATGAAAGGTCAAGTTTAT 57.868 29.630 5.77 0.00 37.30 1.40
348 349 8.514330 ACAAGTACAATGAAAGGTCAAGTTTA 57.486 30.769 5.77 0.00 37.30 2.01
349 350 7.122055 TGACAAGTACAATGAAAGGTCAAGTTT 59.878 33.333 5.77 0.00 37.30 2.66
350 351 6.601613 TGACAAGTACAATGAAAGGTCAAGTT 59.398 34.615 5.77 0.00 37.30 2.66
351 352 6.119536 TGACAAGTACAATGAAAGGTCAAGT 58.880 36.000 5.77 0.00 37.30 3.16
352 353 6.483307 TCTGACAAGTACAATGAAAGGTCAAG 59.517 38.462 5.77 0.00 37.30 3.02
353 354 6.353323 TCTGACAAGTACAATGAAAGGTCAA 58.647 36.000 5.77 0.00 37.30 3.18
354 355 5.924356 TCTGACAAGTACAATGAAAGGTCA 58.076 37.500 5.77 0.00 38.41 4.02
355 356 6.861065 TTCTGACAAGTACAATGAAAGGTC 57.139 37.500 5.77 0.00 0.00 3.85
356 357 7.639113 TTTTCTGACAAGTACAATGAAAGGT 57.361 32.000 5.77 0.00 0.00 3.50
357 358 9.533253 AATTTTTCTGACAAGTACAATGAAAGG 57.467 29.630 5.77 0.00 0.00 3.11
359 360 9.528018 GGAATTTTTCTGACAAGTACAATGAAA 57.472 29.630 5.77 0.00 0.00 2.69
360 361 8.690884 TGGAATTTTTCTGACAAGTACAATGAA 58.309 29.630 5.77 0.00 0.00 2.57
361 362 8.134895 GTGGAATTTTTCTGACAAGTACAATGA 58.865 33.333 5.77 0.00 0.00 2.57
362 363 7.920151 TGTGGAATTTTTCTGACAAGTACAATG 59.080 33.333 0.00 0.00 0.00 2.82
363 364 8.006298 TGTGGAATTTTTCTGACAAGTACAAT 57.994 30.769 0.00 0.00 0.00 2.71
364 365 7.397892 TGTGGAATTTTTCTGACAAGTACAA 57.602 32.000 0.00 0.00 0.00 2.41
365 366 7.397892 TTGTGGAATTTTTCTGACAAGTACA 57.602 32.000 0.00 0.00 32.28 2.90
366 367 8.696410 TTTTGTGGAATTTTTCTGACAAGTAC 57.304 30.769 0.00 0.00 35.21 2.73
367 368 9.364989 CTTTTTGTGGAATTTTTCTGACAAGTA 57.635 29.630 0.00 0.00 35.21 2.24
368 369 8.093927 TCTTTTTGTGGAATTTTTCTGACAAGT 58.906 29.630 0.00 0.00 35.21 3.16
369 370 8.477984 TCTTTTTGTGGAATTTTTCTGACAAG 57.522 30.769 0.00 0.00 35.21 3.16
370 371 8.839310 TTCTTTTTGTGGAATTTTTCTGACAA 57.161 26.923 0.00 0.00 33.34 3.18
371 372 8.839310 TTTCTTTTTGTGGAATTTTTCTGACA 57.161 26.923 0.00 0.00 0.00 3.58
372 373 9.541724 GTTTTCTTTTTGTGGAATTTTTCTGAC 57.458 29.630 0.00 0.00 0.00 3.51
373 374 8.726068 GGTTTTCTTTTTGTGGAATTTTTCTGA 58.274 29.630 0.00 0.00 0.00 3.27
374 375 8.510505 TGGTTTTCTTTTTGTGGAATTTTTCTG 58.489 29.630 0.00 0.00 0.00 3.02
375 376 8.628630 TGGTTTTCTTTTTGTGGAATTTTTCT 57.371 26.923 0.00 0.00 0.00 2.52
376 377 7.484641 GCTGGTTTTCTTTTTGTGGAATTTTTC 59.515 33.333 0.00 0.00 0.00 2.29
377 378 7.312154 GCTGGTTTTCTTTTTGTGGAATTTTT 58.688 30.769 0.00 0.00 0.00 1.94
378 379 6.127758 GGCTGGTTTTCTTTTTGTGGAATTTT 60.128 34.615 0.00 0.00 0.00 1.82
379 380 5.356751 GGCTGGTTTTCTTTTTGTGGAATTT 59.643 36.000 0.00 0.00 0.00 1.82
380 381 4.881273 GGCTGGTTTTCTTTTTGTGGAATT 59.119 37.500 0.00 0.00 0.00 2.17
381 382 4.164030 AGGCTGGTTTTCTTTTTGTGGAAT 59.836 37.500 0.00 0.00 0.00 3.01
382 383 3.517500 AGGCTGGTTTTCTTTTTGTGGAA 59.482 39.130 0.00 0.00 0.00 3.53
383 384 3.103742 AGGCTGGTTTTCTTTTTGTGGA 58.896 40.909 0.00 0.00 0.00 4.02
384 385 3.541996 AGGCTGGTTTTCTTTTTGTGG 57.458 42.857 0.00 0.00 0.00 4.17
385 386 4.934602 TCAAAGGCTGGTTTTCTTTTTGTG 59.065 37.500 0.00 0.00 0.00 3.33
386 387 4.935205 GTCAAAGGCTGGTTTTCTTTTTGT 59.065 37.500 0.00 0.00 0.00 2.83
387 388 5.178061 AGTCAAAGGCTGGTTTTCTTTTTG 58.822 37.500 0.00 0.00 0.00 2.44
388 389 5.420725 AGTCAAAGGCTGGTTTTCTTTTT 57.579 34.783 0.00 0.00 0.00 1.94
389 390 5.187772 AGAAGTCAAAGGCTGGTTTTCTTTT 59.812 36.000 0.00 0.00 0.00 2.27
390 391 4.711846 AGAAGTCAAAGGCTGGTTTTCTTT 59.288 37.500 0.00 0.00 0.00 2.52
391 392 4.281657 AGAAGTCAAAGGCTGGTTTTCTT 58.718 39.130 0.00 0.00 0.00 2.52
392 393 3.903467 AGAAGTCAAAGGCTGGTTTTCT 58.097 40.909 0.00 0.00 0.00 2.52
393 394 4.655762 AAGAAGTCAAAGGCTGGTTTTC 57.344 40.909 0.00 0.00 0.00 2.29
394 395 5.046663 TGAAAAGAAGTCAAAGGCTGGTTTT 60.047 36.000 0.00 0.00 0.00 2.43
395 396 4.466015 TGAAAAGAAGTCAAAGGCTGGTTT 59.534 37.500 0.00 0.00 0.00 3.27
396 397 4.023291 TGAAAAGAAGTCAAAGGCTGGTT 58.977 39.130 0.00 0.00 0.00 3.67
397 398 3.631250 TGAAAAGAAGTCAAAGGCTGGT 58.369 40.909 0.00 0.00 0.00 4.00
398 399 4.654091 TTGAAAAGAAGTCAAAGGCTGG 57.346 40.909 0.00 0.00 32.13 4.85
399 400 6.966435 TTTTTGAAAAGAAGTCAAAGGCTG 57.034 33.333 0.00 0.00 43.76 4.85
430 431 5.355596 CATTCACACTACTTTGGCCAAAAA 58.644 37.500 29.93 19.12 0.00 1.94
431 432 4.202202 CCATTCACACTACTTTGGCCAAAA 60.202 41.667 29.93 16.56 0.00 2.44
432 433 3.320541 CCATTCACACTACTTTGGCCAAA 59.679 43.478 28.65 28.65 0.00 3.28
433 434 2.890311 CCATTCACACTACTTTGGCCAA 59.110 45.455 16.05 16.05 0.00 4.52
434 435 2.158534 ACCATTCACACTACTTTGGCCA 60.159 45.455 0.00 0.00 0.00 5.36
435 436 2.228822 CACCATTCACACTACTTTGGCC 59.771 50.000 0.00 0.00 0.00 5.36
436 437 3.058224 GTCACCATTCACACTACTTTGGC 60.058 47.826 0.00 0.00 0.00 4.52
437 438 3.502211 GGTCACCATTCACACTACTTTGG 59.498 47.826 0.00 0.00 0.00 3.28
438 439 4.214119 CAGGTCACCATTCACACTACTTTG 59.786 45.833 0.00 0.00 0.00 2.77
439 440 4.141482 ACAGGTCACCATTCACACTACTTT 60.141 41.667 0.00 0.00 0.00 2.66
440 441 3.391296 ACAGGTCACCATTCACACTACTT 59.609 43.478 0.00 0.00 0.00 2.24
441 442 2.972713 ACAGGTCACCATTCACACTACT 59.027 45.455 0.00 0.00 0.00 2.57
442 443 3.402628 ACAGGTCACCATTCACACTAC 57.597 47.619 0.00 0.00 0.00 2.73
443 444 5.755409 ATTACAGGTCACCATTCACACTA 57.245 39.130 0.00 0.00 0.00 2.74
444 445 4.640771 ATTACAGGTCACCATTCACACT 57.359 40.909 0.00 0.00 0.00 3.55
445 446 5.703592 TGTTATTACAGGTCACCATTCACAC 59.296 40.000 0.00 0.00 0.00 3.82
446 447 5.870706 TGTTATTACAGGTCACCATTCACA 58.129 37.500 0.00 0.00 0.00 3.58
447 448 6.811253 TTGTTATTACAGGTCACCATTCAC 57.189 37.500 0.00 0.00 35.28 3.18
448 449 9.521841 TTATTTGTTATTACAGGTCACCATTCA 57.478 29.630 0.00 0.00 35.28 2.57
485 486 4.411327 CAACGTTGACTTCAGAGCAAAAA 58.589 39.130 23.90 0.00 0.00 1.94
486 487 3.181501 CCAACGTTGACTTCAGAGCAAAA 60.182 43.478 29.35 0.00 0.00 2.44
487 488 2.354510 CCAACGTTGACTTCAGAGCAAA 59.645 45.455 29.35 0.00 0.00 3.68
488 489 1.939934 CCAACGTTGACTTCAGAGCAA 59.060 47.619 29.35 0.00 0.00 3.91
489 490 1.134521 ACCAACGTTGACTTCAGAGCA 60.135 47.619 29.35 0.00 0.00 4.26
490 491 1.583054 ACCAACGTTGACTTCAGAGC 58.417 50.000 29.35 0.00 0.00 4.09
491 492 4.616181 AAAACCAACGTTGACTTCAGAG 57.384 40.909 29.35 12.16 30.72 3.35
530 531 9.991906 AACTTGACTTACTTTTGCACTAGTATA 57.008 29.630 7.69 0.00 0.00 1.47
531 532 8.904099 AACTTGACTTACTTTTGCACTAGTAT 57.096 30.769 7.69 0.00 0.00 2.12
532 533 8.726870 AAACTTGACTTACTTTTGCACTAGTA 57.273 30.769 0.00 3.57 0.00 1.82
533 534 7.553044 AGAAACTTGACTTACTTTTGCACTAGT 59.447 33.333 5.34 5.34 0.00 2.57
534 535 7.920738 AGAAACTTGACTTACTTTTGCACTAG 58.079 34.615 0.00 0.00 0.00 2.57
535 536 7.859325 AGAAACTTGACTTACTTTTGCACTA 57.141 32.000 0.00 0.00 0.00 2.74
536 537 6.759497 AGAAACTTGACTTACTTTTGCACT 57.241 33.333 0.00 0.00 0.00 4.40
537 538 7.251281 AGAAGAAACTTGACTTACTTTTGCAC 58.749 34.615 0.00 0.00 0.00 4.57
538 539 7.391148 AGAAGAAACTTGACTTACTTTTGCA 57.609 32.000 0.00 0.00 0.00 4.08
539 540 9.783256 TTTAGAAGAAACTTGACTTACTTTTGC 57.217 29.630 0.00 0.00 0.00 3.68
615 616 6.928348 TGGTTGTAGATACACCCTATATGG 57.072 41.667 7.91 0.00 39.28 2.74
616 617 8.190326 TCTTGGTTGTAGATACACCCTATATG 57.810 38.462 7.91 0.00 39.28 1.78
617 618 8.648693 GTTCTTGGTTGTAGATACACCCTATAT 58.351 37.037 7.91 0.00 39.28 0.86
618 619 7.070322 GGTTCTTGGTTGTAGATACACCCTATA 59.930 40.741 7.91 0.00 39.28 1.31
619 620 6.126854 GGTTCTTGGTTGTAGATACACCCTAT 60.127 42.308 7.91 0.00 39.28 2.57
620 621 5.188359 GGTTCTTGGTTGTAGATACACCCTA 59.812 44.000 7.91 0.27 39.28 3.53
621 622 4.019591 GGTTCTTGGTTGTAGATACACCCT 60.020 45.833 7.91 0.00 39.28 4.34
622 623 4.259356 GGTTCTTGGTTGTAGATACACCC 58.741 47.826 0.00 0.00 39.02 4.61
623 624 4.901868 TGGTTCTTGGTTGTAGATACACC 58.098 43.478 0.00 0.00 35.64 4.16
624 625 6.485648 ACTTTGGTTCTTGGTTGTAGATACAC 59.514 38.462 0.00 0.00 35.64 2.90
625 626 6.485313 CACTTTGGTTCTTGGTTGTAGATACA 59.515 38.462 0.00 0.00 0.00 2.29
626 627 6.567891 GCACTTTGGTTCTTGGTTGTAGATAC 60.568 42.308 0.00 0.00 0.00 2.24
627 628 5.472137 GCACTTTGGTTCTTGGTTGTAGATA 59.528 40.000 0.00 0.00 0.00 1.98
628 629 4.278419 GCACTTTGGTTCTTGGTTGTAGAT 59.722 41.667 0.00 0.00 0.00 1.98
629 630 3.630312 GCACTTTGGTTCTTGGTTGTAGA 59.370 43.478 0.00 0.00 0.00 2.59
630 631 3.380004 TGCACTTTGGTTCTTGGTTGTAG 59.620 43.478 0.00 0.00 0.00 2.74
631 632 3.357203 TGCACTTTGGTTCTTGGTTGTA 58.643 40.909 0.00 0.00 0.00 2.41
632 633 2.175202 TGCACTTTGGTTCTTGGTTGT 58.825 42.857 0.00 0.00 0.00 3.32
633 634 2.957491 TGCACTTTGGTTCTTGGTTG 57.043 45.000 0.00 0.00 0.00 3.77
634 635 4.441792 GAAATGCACTTTGGTTCTTGGTT 58.558 39.130 0.00 0.00 0.00 3.67
635 636 3.181466 GGAAATGCACTTTGGTTCTTGGT 60.181 43.478 0.00 0.00 0.00 3.67
636 637 3.392882 GGAAATGCACTTTGGTTCTTGG 58.607 45.455 0.00 0.00 0.00 3.61
637 638 3.070015 AGGGAAATGCACTTTGGTTCTTG 59.930 43.478 0.00 0.00 0.00 3.02
638 639 3.308401 AGGGAAATGCACTTTGGTTCTT 58.692 40.909 0.00 0.00 0.00 2.52
639 640 2.962859 AGGGAAATGCACTTTGGTTCT 58.037 42.857 0.00 0.00 0.00 3.01
640 641 4.220602 ACATAGGGAAATGCACTTTGGTTC 59.779 41.667 0.00 0.00 33.77 3.62
641 642 4.159557 ACATAGGGAAATGCACTTTGGTT 58.840 39.130 0.00 0.00 33.77 3.67
642 643 3.778265 ACATAGGGAAATGCACTTTGGT 58.222 40.909 0.00 0.00 33.77 3.67
643 644 4.806640 AACATAGGGAAATGCACTTTGG 57.193 40.909 0.00 0.00 33.77 3.28
644 645 5.406175 CACAAACATAGGGAAATGCACTTTG 59.594 40.000 0.00 0.00 35.39 2.77
645 646 5.540911 CACAAACATAGGGAAATGCACTTT 58.459 37.500 0.00 0.00 0.00 2.66
646 647 4.561326 GCACAAACATAGGGAAATGCACTT 60.561 41.667 0.00 0.00 0.00 3.16
647 648 3.056607 GCACAAACATAGGGAAATGCACT 60.057 43.478 0.00 0.00 0.00 4.40
648 649 3.253230 GCACAAACATAGGGAAATGCAC 58.747 45.455 0.00 0.00 0.00 4.57
649 650 2.233431 GGCACAAACATAGGGAAATGCA 59.767 45.455 0.00 0.00 33.48 3.96
650 651 2.418609 GGGCACAAACATAGGGAAATGC 60.419 50.000 0.00 0.00 0.00 3.56
651 652 2.830923 TGGGCACAAACATAGGGAAATG 59.169 45.455 0.00 0.00 0.00 2.32
652 653 3.182887 TGGGCACAAACATAGGGAAAT 57.817 42.857 0.00 0.00 0.00 2.17
653 654 2.685106 TGGGCACAAACATAGGGAAA 57.315 45.000 0.00 0.00 0.00 3.13
654 655 2.917713 ATGGGCACAAACATAGGGAA 57.082 45.000 0.00 0.00 0.00 3.97
655 656 2.311542 AGAATGGGCACAAACATAGGGA 59.688 45.455 0.00 0.00 0.00 4.20
656 657 2.689983 GAGAATGGGCACAAACATAGGG 59.310 50.000 0.00 0.00 0.00 3.53
657 658 3.624777 AGAGAATGGGCACAAACATAGG 58.375 45.455 0.00 0.00 0.00 2.57
658 659 4.271049 CGTAGAGAATGGGCACAAACATAG 59.729 45.833 0.00 0.00 0.00 2.23
661 662 2.224426 ACGTAGAGAATGGGCACAAACA 60.224 45.455 0.00 0.00 0.00 2.83
666 667 2.007608 GGAAACGTAGAGAATGGGCAC 58.992 52.381 0.00 0.00 0.00 5.01
742 753 1.745087 CATGGGCACACACACTTATCC 59.255 52.381 0.00 0.00 0.00 2.59
762 773 6.026947 ACTGTGGATAGACTACTTGACAAC 57.973 41.667 0.00 0.00 0.00 3.32
784 796 8.736244 ACATGTGGTTGTGATAAGGTAATAAAC 58.264 33.333 0.00 0.00 0.00 2.01
821 850 7.254522 GGAGTTGTCAGTGTATTTTAACGACAA 60.255 37.037 0.00 0.00 37.42 3.18
878 907 2.911636 AGGAGGATGGATCTGGCAATAG 59.088 50.000 0.00 0.00 0.00 1.73
1049 1095 4.477975 GCGGAGGTGAGACGGACG 62.478 72.222 0.00 0.00 0.00 4.79
1050 1096 4.131088 GGCGGAGGTGAGACGGAC 62.131 72.222 0.00 0.00 0.00 4.79
1191 1241 2.172483 GAGGAGGGCGAGCTTGAACA 62.172 60.000 4.70 0.00 0.00 3.18
1385 1444 2.688958 GAGAGTTGTACGGGTAGATGCT 59.311 50.000 0.00 0.00 0.00 3.79
1395 1454 1.080772 TGCAGCCGAGAGTTGTACG 60.081 57.895 0.00 0.00 0.00 3.67
1403 1462 3.075005 GTAGGGGTGCAGCCGAGA 61.075 66.667 27.67 13.03 38.44 4.04
2027 2133 6.094186 GGTTAGAGTCCCAATCATTCTGAAAC 59.906 42.308 0.00 0.00 0.00 2.78
2076 2182 9.831737 CTCAGATTTTAACATGGTAAACAAGAG 57.168 33.333 15.51 14.91 0.00 2.85
2096 2229 7.341512 TGAGAGTGTACATTTCATCTCTCAGAT 59.658 37.037 25.92 3.48 46.77 2.90
2164 2297 9.376075 GTTCATATTATGGAGAATGATCGACAT 57.624 33.333 3.89 0.00 41.45 3.06
2252 3157 1.153765 GCTTTTGGCTGGGAATCGC 60.154 57.895 0.00 0.00 38.06 4.58
2253 3158 0.602562 TTGCTTTTGGCTGGGAATCG 59.397 50.000 0.00 0.00 42.39 3.34
2269 3174 2.821969 AGGTTGGTGAATCATGACTTGC 59.178 45.455 0.00 0.00 0.00 4.01
2295 3200 4.246458 ACAATCTTAGTTTGAGGACGAGC 58.754 43.478 9.68 0.00 0.00 5.03
2296 3201 6.622549 AGTACAATCTTAGTTTGAGGACGAG 58.377 40.000 9.68 0.00 0.00 4.18
2310 3215 6.546034 ACTTGGCACTGTAAAAGTACAATCTT 59.454 34.615 0.00 0.00 39.75 2.40
2376 3284 2.525368 TGAATAGCAGAGCGGCCTATA 58.475 47.619 0.00 0.00 0.00 1.31
2377 3285 1.342074 TGAATAGCAGAGCGGCCTAT 58.658 50.000 0.00 0.00 0.00 2.57
2378 3286 1.001293 CATGAATAGCAGAGCGGCCTA 59.999 52.381 0.00 0.00 0.00 3.93
2379 3287 0.250209 CATGAATAGCAGAGCGGCCT 60.250 55.000 0.00 0.00 0.00 5.19
2381 3289 1.586422 TTCATGAATAGCAGAGCGGC 58.414 50.000 3.38 0.00 0.00 6.53
2386 3294 8.486210 AGGTAGTTTGTATTCATGAATAGCAGA 58.514 33.333 25.14 17.84 34.27 4.26
2397 3305 7.252612 TGAGATGGAAGGTAGTTTGTATTCA 57.747 36.000 0.00 0.00 0.00 2.57
2401 3309 8.603898 TCTAATGAGATGGAAGGTAGTTTGTA 57.396 34.615 0.00 0.00 0.00 2.41
2459 3393 2.367567 ACATCTTAACTGTCACCGGTGT 59.632 45.455 32.74 16.78 0.00 4.16
2464 3398 4.023193 CCCAAACACATCTTAACTGTCACC 60.023 45.833 0.00 0.00 0.00 4.02
2475 3409 0.251341 GCACCCTCCCAAACACATCT 60.251 55.000 0.00 0.00 0.00 2.90
2487 3421 2.736670 ATTTACCCTCATGCACCCTC 57.263 50.000 0.00 0.00 0.00 4.30
2646 3760 4.231718 ACATAATTTGAAACACGCCGTT 57.768 36.364 0.00 0.00 40.50 4.44
2650 3764 6.984740 TTCTGAACATAATTTGAAACACGC 57.015 33.333 0.00 0.00 0.00 5.34
2808 3933 9.611284 GGAAATTTATTGAAAACTTGAAATGCC 57.389 29.630 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.