Multiple sequence alignment - TraesCS2A01G058000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G058000 chr2A 100.000 3269 0 0 1 3269 24311753 24315021 0.000000e+00 6037.0
1 TraesCS2A01G058000 chr2A 88.521 514 51 7 2204 2715 24337074 24337581 1.670000e-172 616.0
2 TraesCS2A01G058000 chr2B 86.624 2482 192 54 763 3202 39180679 39178296 0.000000e+00 2615.0
3 TraesCS2A01G058000 chr2B 86.214 457 51 10 2215 2668 39164688 39164241 4.900000e-133 484.0
4 TraesCS2A01G058000 chr2B 86.498 237 21 5 3026 3260 39146609 39146382 1.950000e-62 250.0
5 TraesCS2A01G058000 chr2B 94.286 70 4 0 3200 3269 39166752 39166683 1.240000e-19 108.0
6 TraesCS2A01G058000 chr2B 85.714 91 13 0 1949 2039 778849247 778849157 2.680000e-16 97.1
7 TraesCS2A01G058000 chr2D 88.460 1889 133 40 777 2608 22514736 22516596 0.000000e+00 2202.0
8 TraesCS2A01G058000 chr2D 96.378 635 20 3 2637 3269 22516598 22517231 0.000000e+00 1042.0
9 TraesCS2A01G058000 chr2D 88.783 526 49 9 2204 2726 22520642 22521160 1.280000e-178 636.0
10 TraesCS2A01G058000 chr2D 84.615 91 14 0 1949 2039 634875792 634875882 1.250000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G058000 chr2A 24311753 24315021 3268 False 6037.000000 6037 100.000 1 3269 1 chr2A.!!$F1 3268
1 TraesCS2A01G058000 chr2A 24337074 24337581 507 False 616.000000 616 88.521 2204 2715 1 chr2A.!!$F2 511
2 TraesCS2A01G058000 chr2B 39178296 39180679 2383 True 2615.000000 2615 86.624 763 3202 1 chr2B.!!$R2 2439
3 TraesCS2A01G058000 chr2B 39164241 39166752 2511 True 296.000000 484 90.250 2215 3269 2 chr2B.!!$R4 1054
4 TraesCS2A01G058000 chr2D 22514736 22521160 6424 False 1293.333333 2202 91.207 777 3269 3 chr2D.!!$F2 2492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
808 809 0.028242 CGTTAACGCAAAGGCACACA 59.972 50.0 16.05 0.0 41.24 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2302 2369 0.107945 GCGCAATGGAGAGGAGACTT 60.108 55.0 0.3 0.0 44.43 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.799281 TGTTTCCCTTTGAAGCTTGTG 57.201 42.857 2.10 0.00 35.41 3.33
22 23 2.159114 TGTTTCCCTTTGAAGCTTGTGC 60.159 45.455 2.10 0.00 35.41 4.57
23 24 1.774110 TTCCCTTTGAAGCTTGTGCA 58.226 45.000 2.10 0.00 42.74 4.57
24 25 1.321474 TCCCTTTGAAGCTTGTGCAG 58.679 50.000 2.10 0.00 42.74 4.41
25 26 1.133823 TCCCTTTGAAGCTTGTGCAGA 60.134 47.619 2.10 0.00 42.74 4.26
26 27 1.268899 CCCTTTGAAGCTTGTGCAGAG 59.731 52.381 2.10 0.02 42.74 3.35
27 28 1.952296 CCTTTGAAGCTTGTGCAGAGT 59.048 47.619 2.10 0.00 42.74 3.24
28 29 3.141398 CCTTTGAAGCTTGTGCAGAGTA 58.859 45.455 2.10 0.00 42.74 2.59
29 30 3.565482 CCTTTGAAGCTTGTGCAGAGTAA 59.435 43.478 2.10 0.00 42.74 2.24
30 31 4.531332 CTTTGAAGCTTGTGCAGAGTAAC 58.469 43.478 2.10 0.00 42.74 2.50
32 33 3.743521 TGAAGCTTGTGCAGAGTAACAT 58.256 40.909 2.10 0.00 42.74 2.71
34 35 5.304778 TGAAGCTTGTGCAGAGTAACATTA 58.695 37.500 2.10 0.00 42.74 1.90
35 36 5.179368 TGAAGCTTGTGCAGAGTAACATTAC 59.821 40.000 2.10 0.00 42.74 1.89
36 37 4.899502 AGCTTGTGCAGAGTAACATTACT 58.100 39.130 3.94 3.94 43.26 2.24
37 38 5.308825 AGCTTGTGCAGAGTAACATTACTT 58.691 37.500 5.78 0.00 41.86 2.24
38 39 5.180117 AGCTTGTGCAGAGTAACATTACTTG 59.820 40.000 5.78 7.40 41.86 3.16
41 42 6.539649 TGTGCAGAGTAACATTACTTGAAC 57.460 37.500 5.78 10.38 43.64 3.18
42 43 5.176774 TGTGCAGAGTAACATTACTTGAACG 59.823 40.000 5.78 0.00 43.64 3.95
43 44 5.404366 GTGCAGAGTAACATTACTTGAACGA 59.596 40.000 5.78 0.00 43.64 3.85
44 45 5.633601 TGCAGAGTAACATTACTTGAACGAG 59.366 40.000 5.78 0.00 43.64 4.18
45 46 5.444745 GCAGAGTAACATTACTTGAACGAGC 60.445 44.000 5.78 1.09 43.64 5.03
46 47 5.864474 CAGAGTAACATTACTTGAACGAGCT 59.136 40.000 5.78 0.00 43.64 4.09
47 48 7.027760 CAGAGTAACATTACTTGAACGAGCTA 58.972 38.462 5.78 0.00 43.64 3.32
50 51 9.512435 GAGTAACATTACTTGAACGAGCTAATA 57.488 33.333 5.78 0.00 43.64 0.98
51 52 9.517609 AGTAACATTACTTGAACGAGCTAATAG 57.482 33.333 0.00 0.00 40.96 1.73
52 53 9.298774 GTAACATTACTTGAACGAGCTAATAGT 57.701 33.333 0.00 0.00 0.00 2.12
54 55 9.517609 AACATTACTTGAACGAGCTAATAGTAG 57.482 33.333 0.00 0.00 0.00 2.57
78 79 8.600449 AGTTCGATAATTCAATCATTCTCTCC 57.400 34.615 0.00 0.00 0.00 3.71
79 80 7.383572 AGTTCGATAATTCAATCATTCTCTCCG 59.616 37.037 0.00 0.00 0.00 4.63
81 82 7.606349 TCGATAATTCAATCATTCTCTCCGAT 58.394 34.615 0.00 0.00 0.00 4.18
82 83 7.757173 TCGATAATTCAATCATTCTCTCCGATC 59.243 37.037 0.00 0.00 0.00 3.69
83 84 7.758980 CGATAATTCAATCATTCTCTCCGATCT 59.241 37.037 0.00 0.00 0.00 2.75
84 85 9.434420 GATAATTCAATCATTCTCTCCGATCTT 57.566 33.333 0.00 0.00 0.00 2.40
85 86 9.790344 ATAATTCAATCATTCTCTCCGATCTTT 57.210 29.630 0.00 0.00 0.00 2.52
87 88 7.928307 TTCAATCATTCTCTCCGATCTTTTT 57.072 32.000 0.00 0.00 0.00 1.94
88 89 9.618890 ATTCAATCATTCTCTCCGATCTTTTTA 57.381 29.630 0.00 0.00 0.00 1.52
89 90 9.618890 TTCAATCATTCTCTCCGATCTTTTTAT 57.381 29.630 0.00 0.00 0.00 1.40
90 91 9.265901 TCAATCATTCTCTCCGATCTTTTTATC 57.734 33.333 0.00 0.00 0.00 1.75
92 93 9.487790 AATCATTCTCTCCGATCTTTTTATCTC 57.512 33.333 0.00 0.00 0.00 2.75
93 94 7.437748 TCATTCTCTCCGATCTTTTTATCTCC 58.562 38.462 0.00 0.00 0.00 3.71
95 96 7.425224 TTCTCTCCGATCTTTTTATCTCCTT 57.575 36.000 0.00 0.00 0.00 3.36
96 97 6.810911 TCTCTCCGATCTTTTTATCTCCTTG 58.189 40.000 0.00 0.00 0.00 3.61
98 99 5.097742 TCCGATCTTTTTATCTCCTTGCA 57.902 39.130 0.00 0.00 0.00 4.08
100 101 5.586243 TCCGATCTTTTTATCTCCTTGCAAG 59.414 40.000 19.93 19.93 0.00 4.01
101 102 5.355350 CCGATCTTTTTATCTCCTTGCAAGT 59.645 40.000 24.35 9.02 0.00 3.16
102 103 6.127897 CCGATCTTTTTATCTCCTTGCAAGTT 60.128 38.462 24.35 9.28 0.00 2.66
103 104 7.065803 CCGATCTTTTTATCTCCTTGCAAGTTA 59.934 37.037 24.35 11.62 0.00 2.24
104 105 8.450964 CGATCTTTTTATCTCCTTGCAAGTTAA 58.549 33.333 24.35 13.28 0.00 2.01
107 108 9.077885 TCTTTTTATCTCCTTGCAAGTTAATGT 57.922 29.630 24.35 8.32 0.00 2.71
108 109 9.696917 CTTTTTATCTCCTTGCAAGTTAATGTT 57.303 29.630 24.35 5.83 0.00 2.71
111 112 5.880054 TCTCCTTGCAAGTTAATGTTAGC 57.120 39.130 24.35 0.00 0.00 3.09
112 113 5.312895 TCTCCTTGCAAGTTAATGTTAGCA 58.687 37.500 24.35 0.00 0.00 3.49
113 114 5.767665 TCTCCTTGCAAGTTAATGTTAGCAA 59.232 36.000 24.35 0.00 39.38 3.91
114 115 6.264292 TCTCCTTGCAAGTTAATGTTAGCAAA 59.736 34.615 24.35 0.00 40.87 3.68
115 116 6.810911 TCCTTGCAAGTTAATGTTAGCAAAA 58.189 32.000 24.35 0.00 40.87 2.44
116 117 7.268586 TCCTTGCAAGTTAATGTTAGCAAAAA 58.731 30.769 24.35 0.00 40.87 1.94
117 118 7.223777 TCCTTGCAAGTTAATGTTAGCAAAAAC 59.776 33.333 24.35 0.84 40.87 2.43
118 119 6.836577 TGCAAGTTAATGTTAGCAAAAACC 57.163 33.333 0.00 0.00 0.00 3.27
119 120 6.578023 TGCAAGTTAATGTTAGCAAAAACCT 58.422 32.000 0.00 0.00 0.00 3.50
120 121 7.044798 TGCAAGTTAATGTTAGCAAAAACCTT 58.955 30.769 0.00 0.00 0.00 3.50
121 122 7.010923 TGCAAGTTAATGTTAGCAAAAACCTTG 59.989 33.333 0.00 0.00 0.00 3.61
122 123 7.518211 GCAAGTTAATGTTAGCAAAAACCTTGG 60.518 37.037 0.00 0.00 0.00 3.61
123 124 7.119709 AGTTAATGTTAGCAAAAACCTTGGT 57.880 32.000 4.48 0.00 0.00 3.67
124 125 8.240267 AGTTAATGTTAGCAAAAACCTTGGTA 57.760 30.769 0.00 0.00 0.00 3.25
126 127 9.315525 GTTAATGTTAGCAAAAACCTTGGTAAA 57.684 29.630 9.88 3.52 41.92 2.01
128 129 8.601845 AATGTTAGCAAAAACCTTGGTAAATC 57.398 30.769 9.88 1.95 41.92 2.17
129 130 7.354751 TGTTAGCAAAAACCTTGGTAAATCT 57.645 32.000 9.88 0.00 41.92 2.40
131 132 7.068839 TGTTAGCAAAAACCTTGGTAAATCTGA 59.931 33.333 9.88 0.00 41.92 3.27
132 133 6.670695 AGCAAAAACCTTGGTAAATCTGAT 57.329 33.333 0.00 0.00 0.00 2.90
133 134 6.691508 AGCAAAAACCTTGGTAAATCTGATC 58.308 36.000 0.00 0.00 0.00 2.92
134 135 5.869344 GCAAAAACCTTGGTAAATCTGATCC 59.131 40.000 0.00 0.00 0.00 3.36
135 136 6.295292 GCAAAAACCTTGGTAAATCTGATCCT 60.295 38.462 0.00 0.00 0.00 3.24
139 140 4.715297 ACCTTGGTAAATCTGATCCTACGT 59.285 41.667 0.00 0.00 0.00 3.57
142 143 6.183360 CCTTGGTAAATCTGATCCTACGTGTA 60.183 42.308 0.00 0.00 0.00 2.90
143 144 6.387041 TGGTAAATCTGATCCTACGTGTAG 57.613 41.667 0.00 0.00 0.00 2.74
144 145 6.124340 TGGTAAATCTGATCCTACGTGTAGA 58.876 40.000 8.59 0.00 35.21 2.59
145 146 6.604396 TGGTAAATCTGATCCTACGTGTAGAA 59.396 38.462 8.59 0.00 35.21 2.10
146 147 7.287005 TGGTAAATCTGATCCTACGTGTAGAAT 59.713 37.037 8.59 0.00 35.21 2.40
199 200 9.638239 TCATACATGTTTTAGAATTTTGGCTTC 57.362 29.630 2.30 0.00 0.00 3.86
200 201 8.586273 CATACATGTTTTAGAATTTTGGCTTCG 58.414 33.333 2.30 0.00 0.00 3.79
201 202 6.744112 ACATGTTTTAGAATTTTGGCTTCGA 58.256 32.000 0.00 0.00 0.00 3.71
203 204 7.708752 ACATGTTTTAGAATTTTGGCTTCGAAA 59.291 29.630 0.00 0.00 0.00 3.46
205 206 8.655651 TGTTTTAGAATTTTGGCTTCGAAAAT 57.344 26.923 0.00 0.00 38.53 1.82
212 213 9.487790 AGAATTTTGGCTTCGAAAATATTTTGA 57.512 25.926 17.98 12.20 32.94 2.69
215 216 8.824159 TTTTGGCTTCGAAAATATTTTGATCA 57.176 26.923 17.98 10.75 0.00 2.92
216 217 7.810766 TTGGCTTCGAAAATATTTTGATCAC 57.189 32.000 17.98 2.69 0.00 3.06
218 219 7.374272 TGGCTTCGAAAATATTTTGATCACAA 58.626 30.769 17.98 0.00 0.00 3.33
220 221 7.201435 GGCTTCGAAAATATTTTGATCACAACC 60.201 37.037 17.98 5.79 35.63 3.77
222 223 9.190858 CTTCGAAAATATTTTGATCACAACCAA 57.809 29.630 17.98 0.00 35.63 3.67
223 224 9.534565 TTCGAAAATATTTTGATCACAACCAAA 57.465 25.926 17.98 0.00 35.63 3.28
225 226 9.956797 CGAAAATATTTTGATCACAACCAAATC 57.043 29.630 17.98 0.00 35.63 2.17
230 231 6.462552 TTTTGATCACAACCAAATCACTGA 57.537 33.333 0.00 0.00 35.63 3.41
232 233 6.653526 TTGATCACAACCAAATCACTGAAT 57.346 33.333 0.00 0.00 0.00 2.57
233 234 6.653526 TGATCACAACCAAATCACTGAATT 57.346 33.333 0.00 0.00 0.00 2.17
234 235 7.053316 TGATCACAACCAAATCACTGAATTT 57.947 32.000 0.00 0.00 0.00 1.82
235 236 7.147312 TGATCACAACCAAATCACTGAATTTC 58.853 34.615 0.00 0.00 0.00 2.17
236 237 6.462552 TCACAACCAAATCACTGAATTTCA 57.537 33.333 0.00 0.00 0.00 2.69
237 238 7.053316 TCACAACCAAATCACTGAATTTCAT 57.947 32.000 0.00 0.00 0.00 2.57
243 244 7.729116 ACCAAATCACTGAATTTCATTGAACT 58.271 30.769 19.42 9.93 39.09 3.01
244 245 8.206189 ACCAAATCACTGAATTTCATTGAACTT 58.794 29.630 19.42 14.02 39.09 2.66
256 257 9.846248 AATTTCATTGAACTTCAGCTATTACAC 57.154 29.630 0.00 0.00 0.00 2.90
257 258 8.621532 TTTCATTGAACTTCAGCTATTACACT 57.378 30.769 0.00 0.00 0.00 3.55
258 259 8.621532 TTCATTGAACTTCAGCTATTACACTT 57.378 30.769 0.00 0.00 0.00 3.16
259 260 8.621532 TCATTGAACTTCAGCTATTACACTTT 57.378 30.769 0.00 0.00 0.00 2.66
260 261 8.721478 TCATTGAACTTCAGCTATTACACTTTC 58.279 33.333 0.00 0.00 0.00 2.62
261 262 7.435068 TTGAACTTCAGCTATTACACTTTCC 57.565 36.000 0.00 0.00 0.00 3.13
262 263 6.530120 TGAACTTCAGCTATTACACTTTCCA 58.470 36.000 0.00 0.00 0.00 3.53
265 266 8.409358 AACTTCAGCTATTACACTTTCCATTT 57.591 30.769 0.00 0.00 0.00 2.32
267 268 8.299570 ACTTCAGCTATTACACTTTCCATTTTG 58.700 33.333 0.00 0.00 0.00 2.44
268 269 7.156876 TCAGCTATTACACTTTCCATTTTGG 57.843 36.000 0.00 0.00 39.43 3.28
270 271 5.105351 AGCTATTACACTTTCCATTTTGGCC 60.105 40.000 0.00 0.00 37.47 5.36
272 273 5.559148 ATTACACTTTCCATTTTGGCCAA 57.441 34.783 16.05 16.05 37.47 4.52
274 275 2.104622 ACACTTTCCATTTTGGCCAAGG 59.895 45.455 19.48 16.81 37.47 3.61
275 276 1.699083 ACTTTCCATTTTGGCCAAGGG 59.301 47.619 19.48 20.37 37.47 3.95
276 277 1.977129 CTTTCCATTTTGGCCAAGGGA 59.023 47.619 23.97 23.97 37.47 4.20
277 278 2.109229 TTCCATTTTGGCCAAGGGAA 57.891 45.000 29.73 29.73 37.47 3.97
278 279 2.109229 TCCATTTTGGCCAAGGGAAA 57.891 45.000 24.99 15.81 37.47 3.13
280 281 2.780010 TCCATTTTGGCCAAGGGAAAAA 59.220 40.909 24.99 14.85 37.47 1.94
305 306 6.619801 ATTAGCCTGAATTCGTTGTAATCC 57.380 37.500 0.04 0.00 0.00 3.01
307 308 4.331968 AGCCTGAATTCGTTGTAATCCAA 58.668 39.130 0.04 0.00 0.00 3.53
321 322 8.376889 GTTGTAATCCAACCAAATGTTTCATT 57.623 30.769 0.00 0.00 46.39 2.57
324 325 9.703892 TGTAATCCAACCAAATGTTTCATTTAG 57.296 29.630 7.28 3.86 34.00 1.85
325 326 9.705290 GTAATCCAACCAAATGTTTCATTTAGT 57.295 29.630 7.28 4.41 34.00 2.24
329 330 9.535878 TCCAACCAAATGTTTCATTTAGTAAAC 57.464 29.630 7.28 0.00 34.00 2.01
330 331 9.541143 CCAACCAAATGTTTCATTTAGTAAACT 57.459 29.630 7.28 0.00 36.70 2.66
366 367 9.778741 ATGAAGTTATGTGTACTACCATAATGG 57.221 33.333 12.88 0.00 45.02 3.16
367 368 7.713507 TGAAGTTATGTGTACTACCATAATGGC 59.286 37.037 12.88 8.24 42.67 4.40
368 369 7.374975 AGTTATGTGTACTACCATAATGGCT 57.625 36.000 12.88 6.47 42.67 4.75
369 370 8.486942 AGTTATGTGTACTACCATAATGGCTA 57.513 34.615 12.88 0.00 42.67 3.93
370 371 9.101325 AGTTATGTGTACTACCATAATGGCTAT 57.899 33.333 12.88 0.00 42.67 2.97
440 441 7.823149 ATTAAATTGCATTGAAAGAGAGTGC 57.177 32.000 0.00 0.00 36.39 4.40
442 443 2.275134 TGCATTGAAAGAGAGTGCCA 57.725 45.000 0.00 0.00 35.03 4.92
444 445 1.200948 GCATTGAAAGAGAGTGCCACC 59.799 52.381 0.00 0.00 0.00 4.61
445 446 2.507484 CATTGAAAGAGAGTGCCACCA 58.493 47.619 0.00 0.00 0.00 4.17
446 447 2.957402 TTGAAAGAGAGTGCCACCAT 57.043 45.000 0.00 0.00 0.00 3.55
447 448 4.264253 CATTGAAAGAGAGTGCCACCATA 58.736 43.478 0.00 0.00 0.00 2.74
448 449 3.616956 TGAAAGAGAGTGCCACCATAG 57.383 47.619 0.00 0.00 0.00 2.23
450 451 4.093743 TGAAAGAGAGTGCCACCATAGTA 58.906 43.478 0.00 0.00 0.00 1.82
451 452 4.160439 TGAAAGAGAGTGCCACCATAGTAG 59.840 45.833 0.00 0.00 0.00 2.57
452 453 2.035632 AGAGAGTGCCACCATAGTAGC 58.964 52.381 0.00 0.00 0.00 3.58
454 455 2.366916 GAGAGTGCCACCATAGTAGCAT 59.633 50.000 0.00 0.00 42.67 3.79
455 456 2.366916 AGAGTGCCACCATAGTAGCATC 59.633 50.000 0.00 0.00 42.67 3.91
457 458 3.574396 GAGTGCCACCATAGTAGCATCTA 59.426 47.826 0.00 0.00 42.67 1.98
458 459 3.576118 AGTGCCACCATAGTAGCATCTAG 59.424 47.826 0.00 0.00 42.67 2.43
459 460 3.574396 GTGCCACCATAGTAGCATCTAGA 59.426 47.826 0.00 0.00 42.67 2.43
460 461 3.829026 TGCCACCATAGTAGCATCTAGAG 59.171 47.826 0.00 0.00 35.60 2.43
461 462 3.194542 GCCACCATAGTAGCATCTAGAGG 59.805 52.174 0.00 0.00 30.13 3.69
463 464 4.835615 CCACCATAGTAGCATCTAGAGGTT 59.164 45.833 6.23 2.25 33.23 3.50
465 466 4.282195 ACCATAGTAGCATCTAGAGGTTGC 59.718 45.833 8.48 8.48 40.02 4.17
466 467 4.322349 CCATAGTAGCATCTAGAGGTTGCC 60.322 50.000 12.19 0.28 40.44 4.52
468 469 3.379452 AGTAGCATCTAGAGGTTGCCTT 58.621 45.455 12.19 0.00 40.44 4.35
469 470 2.706339 AGCATCTAGAGGTTGCCTTG 57.294 50.000 12.19 0.00 40.44 3.61
470 471 1.211457 AGCATCTAGAGGTTGCCTTGG 59.789 52.381 12.19 0.00 40.44 3.61
471 472 1.748591 GCATCTAGAGGTTGCCTTGGG 60.749 57.143 6.23 0.00 35.31 4.12
472 473 1.561542 CATCTAGAGGTTGCCTTGGGT 59.438 52.381 0.00 0.00 31.76 4.51
473 474 1.276622 TCTAGAGGTTGCCTTGGGTC 58.723 55.000 0.00 0.00 31.76 4.46
474 475 0.108138 CTAGAGGTTGCCTTGGGTCG 60.108 60.000 0.00 0.00 31.76 4.79
475 476 1.550130 TAGAGGTTGCCTTGGGTCGG 61.550 60.000 0.00 0.00 31.76 4.79
482 483 4.785453 CCTTGGGTCGGCTGGAGC 62.785 72.222 0.00 0.00 42.48 4.70
495 496 4.228567 GGAGCGGCAGGAGGCTAC 62.229 72.222 1.45 0.00 44.01 3.58
496 497 4.577246 GAGCGGCAGGAGGCTACG 62.577 72.222 1.45 0.00 44.01 3.51
501 502 4.162690 GCAGGAGGCTACGGGGTG 62.163 72.222 0.00 0.00 40.25 4.61
502 503 4.162690 CAGGAGGCTACGGGGTGC 62.163 72.222 0.00 0.00 0.00 5.01
503 504 4.400251 AGGAGGCTACGGGGTGCT 62.400 66.667 0.00 0.00 0.00 4.40
504 505 2.443390 GGAGGCTACGGGGTGCTA 60.443 66.667 0.00 0.00 0.00 3.49
505 506 2.794028 GGAGGCTACGGGGTGCTAC 61.794 68.421 0.00 0.00 0.00 3.58
506 507 2.762875 AGGCTACGGGGTGCTACC 60.763 66.667 0.00 0.00 37.60 3.18
524 525 3.885521 GGGACGAGGTAGACGGCG 61.886 72.222 4.80 4.80 39.91 6.46
529 530 2.184830 CGAGGTAGACGGCGATGGA 61.185 63.158 16.62 0.00 0.00 3.41
530 531 1.359475 GAGGTAGACGGCGATGGAC 59.641 63.158 16.62 5.64 0.00 4.02
548 549 2.124695 GATCCCGTTGGAGTGCCC 60.125 66.667 0.00 0.00 46.08 5.36
549 550 4.096003 ATCCCGTTGGAGTGCCCG 62.096 66.667 0.00 0.00 46.08 6.13
555 556 4.257654 TTGGAGTGCCCGCCGAAA 62.258 61.111 0.00 0.00 37.93 3.46
556 557 4.697756 TGGAGTGCCCGCCGAAAG 62.698 66.667 0.00 0.00 37.93 2.62
557 558 4.388499 GGAGTGCCCGCCGAAAGA 62.388 66.667 0.00 0.00 0.00 2.52
558 559 3.119096 GAGTGCCCGCCGAAAGAC 61.119 66.667 0.00 0.00 0.00 3.01
559 560 3.876589 GAGTGCCCGCCGAAAGACA 62.877 63.158 0.00 0.00 0.00 3.41
560 561 2.975799 GTGCCCGCCGAAAGACAA 60.976 61.111 0.00 0.00 0.00 3.18
562 563 4.103103 GCCCGCCGAAAGACAAGC 62.103 66.667 0.00 0.00 0.00 4.01
563 564 3.431725 CCCGCCGAAAGACAAGCC 61.432 66.667 0.00 0.00 0.00 4.35
565 566 1.079405 CCGCCGAAAGACAAGCCTA 60.079 57.895 0.00 0.00 0.00 3.93
567 568 0.721718 CGCCGAAAGACAAGCCTAAG 59.278 55.000 0.00 0.00 0.00 2.18
568 569 1.671850 CGCCGAAAGACAAGCCTAAGA 60.672 52.381 0.00 0.00 0.00 2.10
569 570 2.003301 GCCGAAAGACAAGCCTAAGAG 58.997 52.381 0.00 0.00 0.00 2.85
571 572 2.622436 CGAAAGACAAGCCTAAGAGGG 58.378 52.381 0.00 0.00 35.37 4.30
572 573 2.678190 CGAAAGACAAGCCTAAGAGGGG 60.678 54.545 0.00 0.00 35.37 4.79
574 575 1.872773 AGACAAGCCTAAGAGGGGAG 58.127 55.000 0.00 0.00 35.37 4.30
575 576 1.079658 AGACAAGCCTAAGAGGGGAGT 59.920 52.381 0.00 0.00 35.37 3.85
577 578 2.696187 GACAAGCCTAAGAGGGGAGTAG 59.304 54.545 0.00 0.00 35.37 2.57
579 580 2.962421 CAAGCCTAAGAGGGGAGTAGAG 59.038 54.545 0.00 0.00 35.37 2.43
581 582 2.445525 AGCCTAAGAGGGGAGTAGAGAG 59.554 54.545 0.00 0.00 35.37 3.20
582 583 2.444010 GCCTAAGAGGGGAGTAGAGAGA 59.556 54.545 0.00 0.00 35.37 3.10
583 584 3.497942 GCCTAAGAGGGGAGTAGAGAGAG 60.498 56.522 0.00 0.00 35.37 3.20
584 585 3.073946 CCTAAGAGGGGAGTAGAGAGAGG 59.926 56.522 0.00 0.00 0.00 3.69
589 590 3.895041 GAGGGGAGTAGAGAGAGGATTTG 59.105 52.174 0.00 0.00 0.00 2.32
590 591 3.533907 AGGGGAGTAGAGAGAGGATTTGA 59.466 47.826 0.00 0.00 0.00 2.69
591 592 3.895041 GGGGAGTAGAGAGAGGATTTGAG 59.105 52.174 0.00 0.00 0.00 3.02
592 593 3.895041 GGGAGTAGAGAGAGGATTTGAGG 59.105 52.174 0.00 0.00 0.00 3.86
594 595 4.827284 GGAGTAGAGAGAGGATTTGAGGAG 59.173 50.000 0.00 0.00 0.00 3.69
595 596 4.215109 AGTAGAGAGAGGATTTGAGGAGC 58.785 47.826 0.00 0.00 0.00 4.70
596 597 2.397597 AGAGAGAGGATTTGAGGAGCC 58.602 52.381 0.00 0.00 0.00 4.70
598 599 2.365293 GAGAGAGGATTTGAGGAGCCTC 59.635 54.545 9.61 9.61 45.70 4.70
599 600 1.416030 GAGAGGATTTGAGGAGCCTCC 59.584 57.143 13.69 1.26 46.35 4.30
609 610 1.574263 AGGAGCCTCCTCAAACTACC 58.426 55.000 7.68 0.00 45.66 3.18
610 611 1.203313 AGGAGCCTCCTCAAACTACCA 60.203 52.381 7.68 0.00 45.66 3.25
614 615 4.103311 GGAGCCTCCTCAAACTACCAATAT 59.897 45.833 2.64 0.00 39.96 1.28
615 616 5.398012 GGAGCCTCCTCAAACTACCAATATT 60.398 44.000 2.64 0.00 39.96 1.28
616 617 6.079712 AGCCTCCTCAAACTACCAATATTT 57.920 37.500 0.00 0.00 0.00 1.40
617 618 5.888161 AGCCTCCTCAAACTACCAATATTTG 59.112 40.000 0.00 0.00 35.15 2.32
618 619 5.885912 GCCTCCTCAAACTACCAATATTTGA 59.114 40.000 0.00 0.00 39.42 2.69
620 621 7.415653 GCCTCCTCAAACTACCAATATTTGAAG 60.416 40.741 0.00 0.00 40.74 3.02
622 623 8.792830 TCCTCAAACTACCAATATTTGAAGAG 57.207 34.615 0.00 0.00 40.74 2.85
623 624 7.829211 TCCTCAAACTACCAATATTTGAAGAGG 59.171 37.037 0.00 0.00 40.74 3.69
624 625 7.067494 CCTCAAACTACCAATATTTGAAGAGGG 59.933 40.741 0.00 0.00 40.74 4.30
626 627 7.829211 TCAAACTACCAATATTTGAAGAGGGAG 59.171 37.037 0.00 0.00 38.92 4.30
629 630 4.119155 ACCAATATTTGAAGAGGGAGGGA 58.881 43.478 0.00 0.00 0.00 4.20
630 631 4.079730 ACCAATATTTGAAGAGGGAGGGAC 60.080 45.833 0.00 0.00 0.00 4.46
631 632 4.079787 CCAATATTTGAAGAGGGAGGGACA 60.080 45.833 0.00 0.00 0.00 4.02
632 633 5.509498 CAATATTTGAAGAGGGAGGGACAA 58.491 41.667 0.00 0.00 0.00 3.18
633 634 3.728385 ATTTGAAGAGGGAGGGACAAG 57.272 47.619 0.00 0.00 0.00 3.16
634 635 2.118403 TTGAAGAGGGAGGGACAAGT 57.882 50.000 0.00 0.00 0.00 3.16
636 637 2.418669 TGAAGAGGGAGGGACAAGTTT 58.581 47.619 0.00 0.00 0.00 2.66
639 640 1.981495 AGAGGGAGGGACAAGTTTGAG 59.019 52.381 0.00 0.00 0.00 3.02
640 641 1.003696 GAGGGAGGGACAAGTTTGAGG 59.996 57.143 0.00 0.00 0.00 3.86
641 642 1.064825 GGGAGGGACAAGTTTGAGGA 58.935 55.000 0.00 0.00 0.00 3.71
642 643 1.271434 GGGAGGGACAAGTTTGAGGAC 60.271 57.143 0.00 0.00 0.00 3.85
644 645 2.106684 GGAGGGACAAGTTTGAGGACTT 59.893 50.000 0.00 0.00 40.37 3.01
645 646 3.326880 GGAGGGACAAGTTTGAGGACTTA 59.673 47.826 0.00 0.00 37.76 2.24
646 647 4.019231 GGAGGGACAAGTTTGAGGACTTAT 60.019 45.833 0.00 0.00 37.76 1.73
647 648 5.515008 GGAGGGACAAGTTTGAGGACTTATT 60.515 44.000 0.00 0.00 37.76 1.40
648 649 5.561679 AGGGACAAGTTTGAGGACTTATTC 58.438 41.667 0.00 0.00 37.76 1.75
649 650 5.310857 AGGGACAAGTTTGAGGACTTATTCT 59.689 40.000 0.00 0.00 37.76 2.40
651 652 6.149640 GGGACAAGTTTGAGGACTTATTCTTC 59.850 42.308 0.00 0.00 37.76 2.87
652 653 6.710744 GGACAAGTTTGAGGACTTATTCTTCA 59.289 38.462 0.00 0.00 38.52 3.02
653 654 7.228706 GGACAAGTTTGAGGACTTATTCTTCAA 59.771 37.037 0.00 0.00 45.89 2.69
660 661 7.421530 TGAGGACTTATTCTTCAAACTTTCG 57.578 36.000 0.00 0.00 37.39 3.46
661 662 7.214381 TGAGGACTTATTCTTCAAACTTTCGA 58.786 34.615 0.00 0.00 37.39 3.71
664 665 6.128254 GGACTTATTCTTCAAACTTTCGAGGG 60.128 42.308 0.00 0.00 0.00 4.30
665 666 6.531021 ACTTATTCTTCAAACTTTCGAGGGA 58.469 36.000 0.00 0.00 0.00 4.20
666 667 6.996282 ACTTATTCTTCAAACTTTCGAGGGAA 59.004 34.615 0.00 0.00 0.00 3.97
668 669 9.162764 CTTATTCTTCAAACTTTCGAGGGAATA 57.837 33.333 0.00 0.00 30.88 1.75
669 670 7.996098 ATTCTTCAAACTTTCGAGGGAATAA 57.004 32.000 0.00 0.00 30.88 1.40
670 671 7.811117 TTCTTCAAACTTTCGAGGGAATAAA 57.189 32.000 0.00 0.00 30.88 1.40
671 672 7.435068 TCTTCAAACTTTCGAGGGAATAAAG 57.565 36.000 0.00 0.00 36.51 1.85
672 673 7.221450 TCTTCAAACTTTCGAGGGAATAAAGA 58.779 34.615 0.00 0.00 34.90 2.52
673 674 7.717875 TCTTCAAACTTTCGAGGGAATAAAGAA 59.282 33.333 0.00 0.00 34.90 2.52
674 675 7.996098 TCAAACTTTCGAGGGAATAAAGAAT 57.004 32.000 0.00 0.00 34.90 2.40
675 676 8.404107 TCAAACTTTCGAGGGAATAAAGAATT 57.596 30.769 0.00 0.00 34.90 2.17
677 678 8.915654 CAAACTTTCGAGGGAATAAAGAATTTG 58.084 33.333 0.00 0.00 39.63 2.32
678 679 7.996098 ACTTTCGAGGGAATAAAGAATTTGA 57.004 32.000 0.00 0.00 39.63 2.69
680 681 8.515414 ACTTTCGAGGGAATAAAGAATTTGAAG 58.485 33.333 0.00 0.00 39.63 3.02
681 682 8.630054 TTTCGAGGGAATAAAGAATTTGAAGA 57.370 30.769 0.00 0.00 39.63 2.87
683 684 8.630054 TCGAGGGAATAAAGAATTTGAAGAAA 57.370 30.769 0.00 0.00 39.63 2.52
685 686 9.346725 CGAGGGAATAAAGAATTTGAAGAAAAG 57.653 33.333 0.00 0.00 39.63 2.27
686 687 9.645059 GAGGGAATAAAGAATTTGAAGAAAAGG 57.355 33.333 0.00 0.00 39.63 3.11
687 688 8.097038 AGGGAATAAAGAATTTGAAGAAAAGGC 58.903 33.333 0.00 0.00 39.63 4.35
688 689 8.097038 GGGAATAAAGAATTTGAAGAAAAGGCT 58.903 33.333 0.00 0.00 39.63 4.58
691 692 9.645059 AATAAAGAATTTGAAGAAAAGGCTAGC 57.355 29.630 6.04 6.04 39.63 3.42
692 693 6.907853 AAGAATTTGAAGAAAAGGCTAGCT 57.092 33.333 15.72 0.00 0.00 3.32
693 694 6.507958 AGAATTTGAAGAAAAGGCTAGCTC 57.492 37.500 15.72 3.96 0.00 4.09
694 695 4.954092 ATTTGAAGAAAAGGCTAGCTCG 57.046 40.909 15.72 0.00 0.00 5.03
696 697 1.623811 TGAAGAAAAGGCTAGCTCGGT 59.376 47.619 15.72 0.00 0.00 4.69
697 698 2.003301 GAAGAAAAGGCTAGCTCGGTG 58.997 52.381 15.72 0.00 0.00 4.94
698 699 0.977395 AGAAAAGGCTAGCTCGGTGT 59.023 50.000 15.72 0.00 0.00 4.16
699 700 1.348036 AGAAAAGGCTAGCTCGGTGTT 59.652 47.619 15.72 0.68 0.00 3.32
700 701 2.565834 AGAAAAGGCTAGCTCGGTGTTA 59.434 45.455 15.72 0.00 0.00 2.41
701 702 3.007614 AGAAAAGGCTAGCTCGGTGTTAA 59.992 43.478 15.72 0.00 0.00 2.01
702 703 3.412237 AAAGGCTAGCTCGGTGTTAAA 57.588 42.857 15.72 0.00 0.00 1.52
703 704 3.412237 AAGGCTAGCTCGGTGTTAAAA 57.588 42.857 15.72 0.00 0.00 1.52
705 706 1.397343 GGCTAGCTCGGTGTTAAAAGC 59.603 52.381 15.72 0.00 34.95 3.51
706 707 2.073816 GCTAGCTCGGTGTTAAAAGCA 58.926 47.619 7.70 0.00 37.22 3.91
708 709 3.242446 GCTAGCTCGGTGTTAAAAGCATC 60.242 47.826 7.70 0.00 37.22 3.91
710 711 3.003480 AGCTCGGTGTTAAAAGCATCTC 58.997 45.455 0.00 0.00 37.22 2.75
711 712 2.222819 GCTCGGTGTTAAAAGCATCTCG 60.223 50.000 0.00 0.00 34.86 4.04
712 713 3.250744 CTCGGTGTTAAAAGCATCTCGA 58.749 45.455 0.00 0.00 0.00 4.04
713 714 3.655486 TCGGTGTTAAAAGCATCTCGAA 58.345 40.909 0.00 0.00 0.00 3.71
714 715 4.250464 TCGGTGTTAAAAGCATCTCGAAT 58.750 39.130 0.00 0.00 0.00 3.34
715 716 5.412640 TCGGTGTTAAAAGCATCTCGAATA 58.587 37.500 0.00 0.00 0.00 1.75
716 717 5.870433 TCGGTGTTAAAAGCATCTCGAATAA 59.130 36.000 0.00 0.00 0.00 1.40
717 718 5.957796 CGGTGTTAAAAGCATCTCGAATAAC 59.042 40.000 0.00 0.00 0.00 1.89
718 719 6.183360 CGGTGTTAAAAGCATCTCGAATAACT 60.183 38.462 0.00 0.00 0.00 2.24
720 721 7.148474 GGTGTTAAAAGCATCTCGAATAACTGA 60.148 37.037 0.00 0.00 0.00 3.41
721 722 7.688578 GTGTTAAAAGCATCTCGAATAACTGAC 59.311 37.037 0.00 0.00 0.00 3.51
723 724 4.744795 AAGCATCTCGAATAACTGACCT 57.255 40.909 0.00 0.00 0.00 3.85
727 728 6.821388 AGCATCTCGAATAACTGACCTAAAT 58.179 36.000 0.00 0.00 0.00 1.40
728 729 7.275920 AGCATCTCGAATAACTGACCTAAATT 58.724 34.615 0.00 0.00 0.00 1.82
729 730 7.770897 AGCATCTCGAATAACTGACCTAAATTT 59.229 33.333 0.00 0.00 0.00 1.82
730 731 8.398665 GCATCTCGAATAACTGACCTAAATTTT 58.601 33.333 0.00 0.00 0.00 1.82
731 732 9.708222 CATCTCGAATAACTGACCTAAATTTTG 57.292 33.333 0.00 0.00 0.00 2.44
732 733 8.263940 TCTCGAATAACTGACCTAAATTTTGG 57.736 34.615 15.95 15.95 0.00 3.28
735 736 6.967199 CGAATAACTGACCTAAATTTTGGCTC 59.033 38.462 17.24 13.83 0.00 4.70
736 737 7.361713 CGAATAACTGACCTAAATTTTGGCTCA 60.362 37.037 17.24 16.81 0.00 4.26
737 738 7.775053 ATAACTGACCTAAATTTTGGCTCAA 57.225 32.000 17.24 7.30 0.00 3.02
738 739 5.712152 ACTGACCTAAATTTTGGCTCAAG 57.288 39.130 17.24 11.93 0.00 3.02
739 740 5.385198 ACTGACCTAAATTTTGGCTCAAGA 58.615 37.500 17.24 1.01 0.00 3.02
740 741 5.241728 ACTGACCTAAATTTTGGCTCAAGAC 59.758 40.000 17.24 3.29 0.00 3.01
742 743 4.740902 ACCTAAATTTTGGCTCAAGACCT 58.259 39.130 17.24 0.00 0.00 3.85
743 744 5.147767 ACCTAAATTTTGGCTCAAGACCTT 58.852 37.500 17.24 0.00 0.00 3.50
744 745 6.311735 ACCTAAATTTTGGCTCAAGACCTTA 58.688 36.000 17.24 0.00 0.00 2.69
746 747 7.289084 ACCTAAATTTTGGCTCAAGACCTTAAA 59.711 33.333 17.24 0.00 0.00 1.52
747 748 8.147704 CCTAAATTTTGGCTCAAGACCTTAAAA 58.852 33.333 5.72 0.00 0.00 1.52
748 749 9.710900 CTAAATTTTGGCTCAAGACCTTAAAAT 57.289 29.630 0.00 0.00 0.00 1.82
750 751 7.967890 ATTTTGGCTCAAGACCTTAAAATTG 57.032 32.000 0.00 0.00 0.00 2.32
751 752 6.723298 TTTGGCTCAAGACCTTAAAATTGA 57.277 33.333 0.00 0.00 0.00 2.57
753 754 6.723298 TGGCTCAAGACCTTAAAATTGAAA 57.277 33.333 0.00 0.00 31.70 2.69
754 755 7.118496 TGGCTCAAGACCTTAAAATTGAAAA 57.882 32.000 0.00 0.00 31.70 2.29
755 756 7.734942 TGGCTCAAGACCTTAAAATTGAAAAT 58.265 30.769 0.00 0.00 31.70 1.82
756 757 8.210265 TGGCTCAAGACCTTAAAATTGAAAATT 58.790 29.630 0.00 0.00 31.70 1.82
807 808 0.028374 ACGTTAACGCAAAGGCACAC 59.972 50.000 27.07 0.00 44.43 3.82
808 809 0.028242 CGTTAACGCAAAGGCACACA 59.972 50.000 16.05 0.00 41.24 3.72
809 810 1.753956 GTTAACGCAAAGGCACACAG 58.246 50.000 0.00 0.00 41.24 3.66
881 882 1.595929 GACCAGCGAACGAACCCAA 60.596 57.895 0.00 0.00 0.00 4.12
889 890 1.797025 GAACGAACCCAACTCCTCTG 58.203 55.000 0.00 0.00 0.00 3.35
984 990 2.290093 CAGCCACTACCGTAGCTACTAC 59.710 54.545 21.20 0.00 35.91 2.73
1386 1392 3.136750 CCGGAGGCCATGAGAGAG 58.863 66.667 5.01 0.00 46.14 3.20
1428 1434 1.949631 GCGCCGGTGAGCACTATAC 60.950 63.158 21.76 0.00 37.24 1.47
1491 1522 2.172679 TCTGTGACATGCATGCCATTT 58.827 42.857 26.53 6.52 29.71 2.32
1493 1524 3.129113 TCTGTGACATGCATGCCATTTAC 59.871 43.478 26.53 13.81 29.71 2.01
1518 1549 4.142534 ACTCATGATCGCCAACATTTCAAG 60.143 41.667 0.00 0.00 0.00 3.02
1519 1550 3.758023 TCATGATCGCCAACATTTCAAGT 59.242 39.130 0.00 0.00 0.00 3.16
1520 1551 4.218200 TCATGATCGCCAACATTTCAAGTT 59.782 37.500 0.00 0.00 0.00 2.66
1521 1552 3.899734 TGATCGCCAACATTTCAAGTTG 58.100 40.909 0.00 0.00 44.47 3.16
1533 1564 6.265577 ACATTTCAAGTTGAGCACTAAACAC 58.734 36.000 5.56 0.00 32.94 3.32
1660 1698 4.727507 TCAAGAAATCCTTCCTCGAGAG 57.272 45.455 15.71 3.80 31.42 3.20
1681 1719 1.578423 GCAAGCTCAACTGCCAGAC 59.422 57.895 0.00 0.00 0.00 3.51
1705 1743 1.491670 CGGACACACAACAGAGACAG 58.508 55.000 0.00 0.00 0.00 3.51
1719 1757 1.817099 GACAGGGAGAAGGCATGCG 60.817 63.158 12.44 0.00 0.00 4.73
1721 1759 2.110967 CAGGGAGAAGGCATGCGTG 61.111 63.158 14.59 0.09 0.00 5.34
1731 1771 0.527565 GGCATGCGTGTTCCATCTTT 59.472 50.000 12.44 0.00 0.00 2.52
1757 1797 2.939103 CACCTTCAGTTAGGCTACATGC 59.061 50.000 0.00 0.00 38.99 4.06
1758 1798 2.571653 ACCTTCAGTTAGGCTACATGCA 59.428 45.455 0.00 0.00 45.15 3.96
1760 1800 3.562973 CCTTCAGTTAGGCTACATGCATG 59.437 47.826 25.09 25.09 45.15 4.06
1766 1806 5.066893 CAGTTAGGCTACATGCATGTTTCAT 59.933 40.000 35.45 25.16 45.15 2.57
1767 1807 5.653769 AGTTAGGCTACATGCATGTTTCATT 59.346 36.000 35.45 19.69 45.15 2.57
1768 1808 4.644103 AGGCTACATGCATGTTTCATTC 57.356 40.909 35.45 18.82 45.15 2.67
1769 1809 4.018490 AGGCTACATGCATGTTTCATTCA 58.982 39.130 35.45 16.03 45.15 2.57
1770 1810 4.107622 GGCTACATGCATGTTTCATTCAC 58.892 43.478 35.45 16.02 45.15 3.18
1771 1811 3.787634 GCTACATGCATGTTTCATTCACG 59.212 43.478 35.45 14.19 41.97 4.35
1774 1814 3.183754 CATGCATGTTTCATTCACGCAT 58.816 40.909 18.91 0.00 43.69 4.73
1775 1815 2.597520 TGCATGTTTCATTCACGCATG 58.402 42.857 0.00 0.00 39.68 4.06
1776 1816 2.228343 TGCATGTTTCATTCACGCATGA 59.772 40.909 0.00 0.00 39.21 3.07
1777 1817 2.595536 GCATGTTTCATTCACGCATGAC 59.404 45.455 0.00 0.00 39.21 3.06
1778 1818 2.987413 TGTTTCATTCACGCATGACC 57.013 45.000 0.00 0.00 32.68 4.02
1779 1819 2.225467 TGTTTCATTCACGCATGACCA 58.775 42.857 0.00 0.00 32.68 4.02
1781 1821 3.255395 TGTTTCATTCACGCATGACCAAT 59.745 39.130 0.00 0.00 32.68 3.16
1841 1881 2.359975 GTTCCACAAGGAGGCGGG 60.360 66.667 0.00 0.00 46.74 6.13
1903 1943 3.332393 ATCCCGGGGCTGGAGAAGA 62.332 63.158 23.50 0.00 34.80 2.87
2079 2143 1.079127 CAAGGACGGCGACAAGGAT 60.079 57.895 16.62 0.00 0.00 3.24
2081 2145 2.511600 GGACGGCGACAAGGATGG 60.512 66.667 16.62 0.00 0.00 3.51
2137 2201 0.799393 GGAGAAGAAAGACGGCAAGC 59.201 55.000 0.00 0.00 0.00 4.01
2138 2202 0.440371 GAGAAGAAAGACGGCAAGCG 59.560 55.000 0.00 0.00 0.00 4.68
2193 2260 4.329545 GACGGTGGGAAGGCTGCA 62.330 66.667 0.50 0.00 0.00 4.41
2194 2261 4.335647 ACGGTGGGAAGGCTGCAG 62.336 66.667 10.11 10.11 0.00 4.41
2252 2319 1.544314 GGAGAAGGCAGCTGAACAACT 60.544 52.381 20.43 11.92 0.00 3.16
2267 2334 0.669318 CAACTGGCGGCGAAGAAGTA 60.669 55.000 12.98 0.00 0.00 2.24
2309 2376 0.607620 AGCAGTGCTCTGAAGTCTCC 59.392 55.000 19.61 0.00 43.76 3.71
2310 2377 0.607620 GCAGTGCTCTGAAGTCTCCT 59.392 55.000 19.61 0.00 43.76 3.69
2325 2392 3.207669 CCTCTCCATTGCGCTGCC 61.208 66.667 9.73 0.00 0.00 4.85
2338 2405 0.101399 CGCTGCCGTACATTCTCTCT 59.899 55.000 0.00 0.00 0.00 3.10
2351 2418 3.644884 TTCTCTCTTTCTGACGGTGAC 57.355 47.619 0.00 0.00 0.00 3.67
2377 2444 9.278734 CTTTAACTTCAGTTCAGTTTGTTTCTC 57.721 33.333 0.00 0.00 39.31 2.87
2387 2459 8.078596 AGTTCAGTTTGTTTCTCTTTCATATGC 58.921 33.333 0.00 0.00 0.00 3.14
2453 2526 9.757227 TTAAAGAGGTTAATGTTTTGGTTCATG 57.243 29.630 0.00 0.00 0.00 3.07
2459 2532 4.525912 AATGTTTTGGTTCATGGAGAGC 57.474 40.909 0.00 0.00 0.00 4.09
2461 2534 3.149196 TGTTTTGGTTCATGGAGAGCTC 58.851 45.455 5.27 5.27 0.00 4.09
2479 2553 7.123547 GGAGAGCTCTAGGTGCACTTATATATT 59.876 40.741 18.25 0.00 31.92 1.28
2771 2847 8.630054 TGAATATTTTTATATAGCAGCGGGTT 57.370 30.769 0.00 0.00 0.00 4.11
2879 2955 1.957877 TGGCCCAAACTTTCTTAACCG 59.042 47.619 0.00 0.00 0.00 4.44
2913 2989 3.181405 CCCCTCCCTAGTAAGCTATTCCT 60.181 52.174 0.00 0.00 0.00 3.36
2927 3003 6.225981 AGCTATTCCTGCCCAAATTTTAAG 57.774 37.500 0.00 0.00 0.00 1.85
3157 3237 2.631160 TGAACATGAAAGGTCACCGT 57.369 45.000 0.00 0.00 36.31 4.83
3187 3267 1.135286 CGGCCATTGCTTTTCTTCTCC 60.135 52.381 2.24 0.00 37.74 3.71
3188 3268 1.135286 GGCCATTGCTTTTCTTCTCCG 60.135 52.381 0.00 0.00 37.74 4.63
3259 3339 3.039252 AGTCTACCATTCCCTCTCCAG 57.961 52.381 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.678529 GCACAAGCTTCAAAGGGAAACAA 60.679 43.478 0.00 0.00 37.91 2.83
1 2 2.159114 GCACAAGCTTCAAAGGGAAACA 60.159 45.455 0.00 0.00 37.91 2.83
3 4 2.101249 CTGCACAAGCTTCAAAGGGAAA 59.899 45.455 0.00 0.00 42.74 3.13
5 6 1.133823 TCTGCACAAGCTTCAAAGGGA 60.134 47.619 0.00 0.00 42.74 4.20
7 8 1.952296 ACTCTGCACAAGCTTCAAAGG 59.048 47.619 0.00 0.00 42.74 3.11
8 9 4.035558 TGTTACTCTGCACAAGCTTCAAAG 59.964 41.667 0.00 0.00 42.74 2.77
9 10 3.944650 TGTTACTCTGCACAAGCTTCAAA 59.055 39.130 0.00 0.00 42.74 2.69
10 11 3.540617 TGTTACTCTGCACAAGCTTCAA 58.459 40.909 0.00 0.00 42.74 2.69
11 12 3.192541 TGTTACTCTGCACAAGCTTCA 57.807 42.857 0.00 0.00 42.74 3.02
12 13 4.756084 AATGTTACTCTGCACAAGCTTC 57.244 40.909 0.00 0.00 42.74 3.86
16 17 6.785488 TCAAGTAATGTTACTCTGCACAAG 57.215 37.500 5.93 0.00 42.86 3.16
17 18 6.292649 CGTTCAAGTAATGTTACTCTGCACAA 60.293 38.462 5.93 0.00 42.86 3.33
18 19 5.176774 CGTTCAAGTAATGTTACTCTGCACA 59.823 40.000 5.93 0.00 42.86 4.57
19 20 5.404366 TCGTTCAAGTAATGTTACTCTGCAC 59.596 40.000 5.93 6.77 42.86 4.57
20 21 5.534407 TCGTTCAAGTAATGTTACTCTGCA 58.466 37.500 5.93 0.00 42.86 4.41
21 22 5.444745 GCTCGTTCAAGTAATGTTACTCTGC 60.445 44.000 5.93 1.34 42.86 4.26
22 23 5.864474 AGCTCGTTCAAGTAATGTTACTCTG 59.136 40.000 5.93 7.13 42.86 3.35
23 24 6.026947 AGCTCGTTCAAGTAATGTTACTCT 57.973 37.500 5.93 0.00 42.86 3.24
24 25 7.807687 TTAGCTCGTTCAAGTAATGTTACTC 57.192 36.000 5.93 0.00 42.86 2.59
25 26 9.517609 CTATTAGCTCGTTCAAGTAATGTTACT 57.482 33.333 0.00 0.00 45.43 2.24
26 27 9.298774 ACTATTAGCTCGTTCAAGTAATGTTAC 57.701 33.333 0.00 0.00 0.00 2.50
28 29 9.517609 CTACTATTAGCTCGTTCAAGTAATGTT 57.482 33.333 0.00 0.00 0.00 2.71
29 30 8.684520 ACTACTATTAGCTCGTTCAAGTAATGT 58.315 33.333 0.00 0.00 0.00 2.71
30 31 9.517609 AACTACTATTAGCTCGTTCAAGTAATG 57.482 33.333 0.00 0.00 0.00 1.90
32 33 7.907045 CGAACTACTATTAGCTCGTTCAAGTAA 59.093 37.037 14.98 0.00 38.55 2.24
34 35 6.093219 TCGAACTACTATTAGCTCGTTCAAGT 59.907 38.462 11.27 0.00 42.25 3.16
35 36 6.484540 TCGAACTACTATTAGCTCGTTCAAG 58.515 40.000 11.27 0.00 42.25 3.02
36 37 6.426980 TCGAACTACTATTAGCTCGTTCAA 57.573 37.500 11.27 0.00 42.25 2.69
37 38 6.615264 ATCGAACTACTATTAGCTCGTTCA 57.385 37.500 11.27 0.00 42.25 3.18
38 39 9.609950 AATTATCGAACTACTATTAGCTCGTTC 57.390 33.333 11.27 8.91 42.25 3.95
41 42 9.608617 TTGAATTATCGAACTACTATTAGCTCG 57.391 33.333 6.58 6.58 42.75 5.03
52 53 9.698309 GGAGAGAATGATTGAATTATCGAACTA 57.302 33.333 0.00 0.00 33.86 2.24
53 54 7.383572 CGGAGAGAATGATTGAATTATCGAACT 59.616 37.037 0.00 0.00 33.86 3.01
54 55 7.382488 TCGGAGAGAATGATTGAATTATCGAAC 59.618 37.037 0.00 0.00 33.86 3.95
58 59 9.434420 AAGATCGGAGAGAATGATTGAATTATC 57.566 33.333 0.00 0.00 43.63 1.75
60 61 9.618890 AAAAGATCGGAGAGAATGATTGAATTA 57.381 29.630 0.00 0.00 43.63 1.40
61 62 8.517062 AAAAGATCGGAGAGAATGATTGAATT 57.483 30.769 0.00 0.00 43.63 2.17
62 63 8.517062 AAAAAGATCGGAGAGAATGATTGAAT 57.483 30.769 0.00 0.00 43.63 2.57
63 64 7.928307 AAAAAGATCGGAGAGAATGATTGAA 57.072 32.000 0.00 0.00 43.63 2.69
64 65 9.265901 GATAAAAAGATCGGAGAGAATGATTGA 57.734 33.333 0.00 0.00 43.63 2.57
68 69 7.288852 AGGAGATAAAAAGATCGGAGAGAATGA 59.711 37.037 0.00 0.00 43.63 2.57
70 71 7.610580 AGGAGATAAAAAGATCGGAGAGAAT 57.389 36.000 0.00 0.00 43.63 2.40
71 72 7.268586 CAAGGAGATAAAAAGATCGGAGAGAA 58.731 38.462 0.00 0.00 43.63 2.87
73 74 5.465056 GCAAGGAGATAAAAAGATCGGAGAG 59.535 44.000 0.00 0.00 43.63 3.20
75 76 5.118990 TGCAAGGAGATAAAAAGATCGGAG 58.881 41.667 0.00 0.00 0.00 4.63
77 78 5.355350 ACTTGCAAGGAGATAAAAAGATCGG 59.645 40.000 29.18 0.00 0.00 4.18
78 79 6.428385 ACTTGCAAGGAGATAAAAAGATCG 57.572 37.500 29.18 0.12 0.00 3.69
81 82 9.077885 ACATTAACTTGCAAGGAGATAAAAAGA 57.922 29.630 29.18 3.65 0.00 2.52
82 83 9.696917 AACATTAACTTGCAAGGAGATAAAAAG 57.303 29.630 29.18 16.63 0.00 2.27
85 86 8.458843 GCTAACATTAACTTGCAAGGAGATAAA 58.541 33.333 29.18 13.89 0.00 1.40
87 88 7.109501 TGCTAACATTAACTTGCAAGGAGATA 58.890 34.615 29.18 13.99 0.00 1.98
88 89 5.945784 TGCTAACATTAACTTGCAAGGAGAT 59.054 36.000 29.18 16.29 0.00 2.75
89 90 5.312895 TGCTAACATTAACTTGCAAGGAGA 58.687 37.500 29.18 14.79 0.00 3.71
90 91 5.627499 TGCTAACATTAACTTGCAAGGAG 57.373 39.130 29.18 15.81 0.00 3.69
92 93 7.344441 GTTTTTGCTAACATTAACTTGCAAGG 58.656 34.615 29.18 14.02 40.65 3.61
93 94 7.224557 AGGTTTTTGCTAACATTAACTTGCAAG 59.775 33.333 24.84 24.84 40.65 4.01
95 96 6.578023 AGGTTTTTGCTAACATTAACTTGCA 58.422 32.000 0.00 0.00 0.00 4.08
96 97 7.344441 CAAGGTTTTTGCTAACATTAACTTGC 58.656 34.615 0.00 0.00 31.53 4.01
98 99 7.561251 ACCAAGGTTTTTGCTAACATTAACTT 58.439 30.769 0.00 0.00 31.53 2.66
100 101 8.874744 TTACCAAGGTTTTTGCTAACATTAAC 57.125 30.769 0.00 0.00 31.53 2.01
102 103 9.699703 GATTTACCAAGGTTTTTGCTAACATTA 57.300 29.630 0.00 0.00 31.53 1.90
103 104 8.428852 AGATTTACCAAGGTTTTTGCTAACATT 58.571 29.630 0.00 0.00 32.78 2.71
104 105 7.872483 CAGATTTACCAAGGTTTTTGCTAACAT 59.128 33.333 0.00 0.00 0.00 2.71
105 106 7.068839 TCAGATTTACCAAGGTTTTTGCTAACA 59.931 33.333 0.00 0.00 0.00 2.41
106 107 7.430441 TCAGATTTACCAAGGTTTTTGCTAAC 58.570 34.615 0.00 0.00 0.00 2.34
107 108 7.589958 TCAGATTTACCAAGGTTTTTGCTAA 57.410 32.000 0.00 0.00 0.00 3.09
108 109 7.093945 GGATCAGATTTACCAAGGTTTTTGCTA 60.094 37.037 0.00 0.00 0.00 3.49
109 110 6.295292 GGATCAGATTTACCAAGGTTTTTGCT 60.295 38.462 0.00 0.00 0.00 3.91
110 111 5.869344 GGATCAGATTTACCAAGGTTTTTGC 59.131 40.000 0.00 0.00 0.00 3.68
111 112 7.232118 AGGATCAGATTTACCAAGGTTTTTG 57.768 36.000 0.00 0.00 0.00 2.44
112 113 7.120726 CGTAGGATCAGATTTACCAAGGTTTTT 59.879 37.037 0.00 0.00 0.00 1.94
113 114 6.598064 CGTAGGATCAGATTTACCAAGGTTTT 59.402 38.462 0.00 0.00 0.00 2.43
114 115 6.113411 CGTAGGATCAGATTTACCAAGGTTT 58.887 40.000 0.00 0.00 0.00 3.27
115 116 5.189145 ACGTAGGATCAGATTTACCAAGGTT 59.811 40.000 0.00 0.00 0.00 3.50
116 117 4.715297 ACGTAGGATCAGATTTACCAAGGT 59.285 41.667 0.00 0.00 0.00 3.50
117 118 5.050490 CACGTAGGATCAGATTTACCAAGG 58.950 45.833 0.00 0.00 0.00 3.61
118 119 5.661458 ACACGTAGGATCAGATTTACCAAG 58.339 41.667 0.00 0.00 0.00 3.61
119 120 5.670792 ACACGTAGGATCAGATTTACCAA 57.329 39.130 0.00 0.00 0.00 3.67
120 121 6.124340 TCTACACGTAGGATCAGATTTACCA 58.876 40.000 4.44 0.00 34.06 3.25
121 122 6.630444 TCTACACGTAGGATCAGATTTACC 57.370 41.667 4.44 0.00 34.06 2.85
173 174 9.638239 GAAGCCAAAATTCTAAAACATGTATGA 57.362 29.630 0.00 0.00 0.00 2.15
174 175 8.586273 CGAAGCCAAAATTCTAAAACATGTATG 58.414 33.333 0.00 0.00 0.00 2.39
176 177 7.877003 TCGAAGCCAAAATTCTAAAACATGTA 58.123 30.769 0.00 0.00 0.00 2.29
177 178 6.744112 TCGAAGCCAAAATTCTAAAACATGT 58.256 32.000 0.00 0.00 0.00 3.21
178 179 7.636259 TTCGAAGCCAAAATTCTAAAACATG 57.364 32.000 0.00 0.00 0.00 3.21
179 180 8.655651 TTTTCGAAGCCAAAATTCTAAAACAT 57.344 26.923 0.00 0.00 30.76 2.71
180 181 8.655651 ATTTTCGAAGCCAAAATTCTAAAACA 57.344 26.923 0.00 0.00 35.48 2.83
186 187 9.487790 TCAAAATATTTTCGAAGCCAAAATTCT 57.512 25.926 10.53 0.00 35.52 2.40
189 190 9.434420 TGATCAAAATATTTTCGAAGCCAAAAT 57.566 25.926 10.53 0.00 37.27 1.82
190 191 8.707839 GTGATCAAAATATTTTCGAAGCCAAAA 58.292 29.630 10.53 0.00 0.00 2.44
191 192 7.869937 TGTGATCAAAATATTTTCGAAGCCAAA 59.130 29.630 10.53 5.51 0.00 3.28
192 193 7.374272 TGTGATCAAAATATTTTCGAAGCCAA 58.626 30.769 10.53 0.00 0.00 4.52
193 194 6.918626 TGTGATCAAAATATTTTCGAAGCCA 58.081 32.000 10.53 8.85 0.00 4.75
194 195 7.201435 GGTTGTGATCAAAATATTTTCGAAGCC 60.201 37.037 10.53 5.58 35.20 4.35
195 196 7.328249 TGGTTGTGATCAAAATATTTTCGAAGC 59.672 33.333 10.53 7.50 35.20 3.86
196 197 8.741101 TGGTTGTGATCAAAATATTTTCGAAG 57.259 30.769 10.53 0.48 35.20 3.79
197 198 9.534565 TTTGGTTGTGATCAAAATATTTTCGAA 57.465 25.926 10.53 0.00 35.20 3.71
198 199 9.703892 ATTTGGTTGTGATCAAAATATTTTCGA 57.296 25.926 10.53 11.68 36.60 3.71
199 200 9.956797 GATTTGGTTGTGATCAAAATATTTTCG 57.043 29.630 10.53 7.14 36.60 3.46
203 204 9.426837 CAGTGATTTGGTTGTGATCAAAATATT 57.573 29.630 0.61 0.00 36.60 1.28
205 206 8.175925 TCAGTGATTTGGTTGTGATCAAAATA 57.824 30.769 0.61 0.00 36.60 1.40
208 209 6.462552 TTCAGTGATTTGGTTGTGATCAAA 57.537 33.333 0.00 0.00 37.29 2.69
209 210 6.653526 ATTCAGTGATTTGGTTGTGATCAA 57.346 33.333 0.00 0.00 32.14 2.57
210 211 6.653526 AATTCAGTGATTTGGTTGTGATCA 57.346 33.333 0.00 0.00 0.00 2.92
211 212 7.147312 TGAAATTCAGTGATTTGGTTGTGATC 58.853 34.615 0.00 0.00 29.75 2.92
212 213 7.053316 TGAAATTCAGTGATTTGGTTGTGAT 57.947 32.000 0.00 0.00 29.75 3.06
214 215 7.438757 TCAATGAAATTCAGTGATTTGGTTGTG 59.561 33.333 20.27 0.00 45.10 3.33
215 216 7.499292 TCAATGAAATTCAGTGATTTGGTTGT 58.501 30.769 20.27 0.00 45.10 3.32
216 217 7.949903 TCAATGAAATTCAGTGATTTGGTTG 57.050 32.000 20.27 7.73 45.10 3.77
230 231 9.846248 GTGTAATAGCTGAAGTTCAATGAAATT 57.154 29.630 8.48 8.48 36.63 1.82
232 233 8.621532 AGTGTAATAGCTGAAGTTCAATGAAA 57.378 30.769 7.06 0.00 0.00 2.69
233 234 8.621532 AAGTGTAATAGCTGAAGTTCAATGAA 57.378 30.769 7.06 0.00 0.00 2.57
234 235 8.621532 AAAGTGTAATAGCTGAAGTTCAATGA 57.378 30.769 7.06 0.00 0.00 2.57
235 236 7.965107 GGAAAGTGTAATAGCTGAAGTTCAATG 59.035 37.037 7.06 0.00 0.00 2.82
236 237 7.665559 TGGAAAGTGTAATAGCTGAAGTTCAAT 59.334 33.333 7.06 1.38 0.00 2.57
237 238 6.995686 TGGAAAGTGTAATAGCTGAAGTTCAA 59.004 34.615 7.06 0.00 0.00 2.69
243 244 7.601856 CCAAAATGGAAAGTGTAATAGCTGAA 58.398 34.615 0.00 0.00 40.96 3.02
244 245 6.350110 GCCAAAATGGAAAGTGTAATAGCTGA 60.350 38.462 0.00 0.00 40.96 4.26
247 248 5.109210 GGCCAAAATGGAAAGTGTAATAGC 58.891 41.667 0.00 0.00 40.96 2.97
248 249 6.279513 TGGCCAAAATGGAAAGTGTAATAG 57.720 37.500 0.61 0.00 40.96 1.73
250 251 5.512921 CCTTGGCCAAAATGGAAAGTGTAAT 60.513 40.000 20.91 0.00 40.96 1.89
252 253 3.323403 CCTTGGCCAAAATGGAAAGTGTA 59.677 43.478 20.91 0.00 40.96 2.90
253 254 2.104622 CCTTGGCCAAAATGGAAAGTGT 59.895 45.455 20.91 0.00 40.96 3.55
254 255 2.550639 CCCTTGGCCAAAATGGAAAGTG 60.551 50.000 20.91 3.23 40.96 3.16
255 256 1.699083 CCCTTGGCCAAAATGGAAAGT 59.301 47.619 20.91 0.00 40.96 2.66
256 257 1.977129 TCCCTTGGCCAAAATGGAAAG 59.023 47.619 20.91 4.58 40.96 2.62
257 258 2.109229 TCCCTTGGCCAAAATGGAAA 57.891 45.000 20.91 6.43 40.96 3.13
258 259 2.109229 TTCCCTTGGCCAAAATGGAA 57.891 45.000 27.62 27.62 40.96 3.53
259 260 2.109229 TTTCCCTTGGCCAAAATGGA 57.891 45.000 20.91 21.17 40.96 3.41
260 261 2.947127 TTTTCCCTTGGCCAAAATGG 57.053 45.000 20.91 19.25 41.55 3.16
278 279 9.353999 GATTACAACGAATTCAGGCTAATTTTT 57.646 29.630 6.22 0.00 0.00 1.94
280 281 7.122055 TGGATTACAACGAATTCAGGCTAATTT 59.878 33.333 6.22 0.00 0.00 1.82
284 285 5.092554 TGGATTACAACGAATTCAGGCTA 57.907 39.130 6.22 0.00 0.00 3.93
286 287 4.695217 TTGGATTACAACGAATTCAGGC 57.305 40.909 6.22 0.00 33.18 4.85
297 298 8.970859 AAATGAAACATTTGGTTGGATTACAA 57.029 26.923 8.59 0.00 40.35 2.41
298 299 9.703892 CTAAATGAAACATTTGGTTGGATTACA 57.296 29.630 16.61 0.00 40.35 2.41
299 300 9.705290 ACTAAATGAAACATTTGGTTGGATTAC 57.295 29.630 16.32 0.00 40.35 1.89
341 342 7.713507 GCCATTATGGTAGTACACATAACTTCA 59.286 37.037 13.28 1.15 40.97 3.02
342 343 7.931948 AGCCATTATGGTAGTACACATAACTTC 59.068 37.037 13.28 13.04 40.97 3.01
364 365 9.554395 TGTCTTTTCATCGAAATATTATAGCCA 57.446 29.630 0.00 0.00 31.34 4.75
415 416 7.975616 GGCACTCTCTTTCAATGCAATTTAATA 59.024 33.333 0.00 0.00 38.05 0.98
416 417 6.815142 GGCACTCTCTTTCAATGCAATTTAAT 59.185 34.615 0.00 0.00 38.05 1.40
419 420 4.039488 TGGCACTCTCTTTCAATGCAATTT 59.961 37.500 0.00 0.00 38.05 1.82
420 421 3.575256 TGGCACTCTCTTTCAATGCAATT 59.425 39.130 0.00 0.00 38.05 2.32
421 422 3.057033 GTGGCACTCTCTTTCAATGCAAT 60.057 43.478 11.13 0.00 38.05 3.56
424 425 1.200948 GGTGGCACTCTCTTTCAATGC 59.799 52.381 18.45 0.00 35.51 3.56
425 426 2.507484 TGGTGGCACTCTCTTTCAATG 58.493 47.619 18.45 0.00 0.00 2.82
426 427 2.957402 TGGTGGCACTCTCTTTCAAT 57.043 45.000 18.45 0.00 0.00 2.57
427 428 2.957402 ATGGTGGCACTCTCTTTCAA 57.043 45.000 18.45 0.00 0.00 2.69
428 429 2.906389 ACTATGGTGGCACTCTCTTTCA 59.094 45.455 18.45 5.23 0.00 2.69
429 430 3.618690 ACTATGGTGGCACTCTCTTTC 57.381 47.619 18.45 0.00 0.00 2.62
430 431 3.118592 GCTACTATGGTGGCACTCTCTTT 60.119 47.826 18.45 0.71 46.92 2.52
431 432 2.432510 GCTACTATGGTGGCACTCTCTT 59.567 50.000 18.45 1.95 46.92 2.85
432 433 2.035632 GCTACTATGGTGGCACTCTCT 58.964 52.381 18.45 2.51 46.92 3.10
433 434 2.517650 GCTACTATGGTGGCACTCTC 57.482 55.000 18.45 1.07 46.92 3.20
440 441 4.411927 ACCTCTAGATGCTACTATGGTGG 58.588 47.826 0.00 0.00 32.36 4.61
442 443 4.282195 GCAACCTCTAGATGCTACTATGGT 59.718 45.833 9.15 0.00 37.12 3.55
444 445 4.526262 AGGCAACCTCTAGATGCTACTATG 59.474 45.833 14.73 0.00 39.94 2.23
445 446 4.746466 AGGCAACCTCTAGATGCTACTAT 58.254 43.478 14.73 0.00 39.94 2.12
446 447 4.186077 AGGCAACCTCTAGATGCTACTA 57.814 45.455 14.73 0.00 39.94 1.82
447 448 3.039252 AGGCAACCTCTAGATGCTACT 57.961 47.619 14.73 3.92 39.94 2.57
448 449 3.462021 CAAGGCAACCTCTAGATGCTAC 58.538 50.000 14.73 1.92 39.94 3.58
450 451 1.211457 CCAAGGCAACCTCTAGATGCT 59.789 52.381 14.73 1.24 39.94 3.79
451 452 1.673168 CCAAGGCAACCTCTAGATGC 58.327 55.000 8.08 8.08 39.33 3.91
452 453 1.561542 ACCCAAGGCAACCTCTAGATG 59.438 52.381 0.00 0.00 30.89 2.90
454 455 1.276622 GACCCAAGGCAACCTCTAGA 58.723 55.000 0.00 0.00 30.89 2.43
455 456 0.108138 CGACCCAAGGCAACCTCTAG 60.108 60.000 0.00 0.00 30.89 2.43
457 458 2.750350 CGACCCAAGGCAACCTCT 59.250 61.111 0.00 0.00 30.89 3.69
458 459 2.359975 CCGACCCAAGGCAACCTC 60.360 66.667 0.00 0.00 30.89 3.85
465 466 4.785453 GCTCCAGCCGACCCAAGG 62.785 72.222 0.00 0.00 34.31 3.61
477 478 4.777854 TAGCCTCCTGCCGCTCCA 62.778 66.667 0.00 0.00 42.71 3.86
478 479 4.228567 GTAGCCTCCTGCCGCTCC 62.229 72.222 0.00 0.00 42.71 4.70
479 480 4.577246 CGTAGCCTCCTGCCGCTC 62.577 72.222 0.00 0.00 42.71 5.03
484 485 4.162690 CACCCCGTAGCCTCCTGC 62.163 72.222 0.00 0.00 41.71 4.85
485 486 4.162690 GCACCCCGTAGCCTCCTG 62.163 72.222 0.00 0.00 0.00 3.86
486 487 3.005148 TAGCACCCCGTAGCCTCCT 62.005 63.158 0.00 0.00 0.00 3.69
487 488 2.443390 TAGCACCCCGTAGCCTCC 60.443 66.667 0.00 0.00 0.00 4.30
489 490 2.762875 GGTAGCACCCCGTAGCCT 60.763 66.667 0.00 0.00 30.04 4.58
490 491 4.217159 CGGTAGCACCCCGTAGCC 62.217 72.222 1.03 0.00 40.59 3.93
491 492 4.217159 CCGGTAGCACCCCGTAGC 62.217 72.222 0.00 0.00 43.98 3.58
492 493 3.534056 CCCGGTAGCACCCCGTAG 61.534 72.222 0.00 0.00 43.98 3.51
493 494 4.059304 TCCCGGTAGCACCCCGTA 62.059 66.667 0.00 0.00 43.98 4.02
497 498 3.834799 CTCGTCCCGGTAGCACCC 61.835 72.222 0.00 0.00 33.75 4.61
498 499 3.834799 CCTCGTCCCGGTAGCACC 61.835 72.222 0.00 0.00 34.05 5.01
499 500 1.722636 CTACCTCGTCCCGGTAGCAC 61.723 65.000 0.00 0.00 45.23 4.40
500 501 1.452651 CTACCTCGTCCCGGTAGCA 60.453 63.158 0.00 0.00 45.23 3.49
501 502 3.429925 CTACCTCGTCCCGGTAGC 58.570 66.667 0.00 0.00 45.23 3.58
503 504 1.153369 CGTCTACCTCGTCCCGGTA 60.153 63.158 0.00 0.00 35.98 4.02
504 505 2.437359 CGTCTACCTCGTCCCGGT 60.437 66.667 0.00 0.00 38.55 5.28
505 506 3.207669 CCGTCTACCTCGTCCCGG 61.208 72.222 0.00 0.00 0.00 5.73
506 507 3.885521 GCCGTCTACCTCGTCCCG 61.886 72.222 0.00 0.00 0.00 5.14
507 508 3.885521 CGCCGTCTACCTCGTCCC 61.886 72.222 0.00 0.00 0.00 4.46
508 509 2.185494 ATCGCCGTCTACCTCGTCC 61.185 63.158 0.00 0.00 0.00 4.79
509 510 1.009900 CATCGCCGTCTACCTCGTC 60.010 63.158 0.00 0.00 0.00 4.20
510 511 2.478890 CCATCGCCGTCTACCTCGT 61.479 63.158 0.00 0.00 0.00 4.18
511 512 2.184830 TCCATCGCCGTCTACCTCG 61.185 63.158 0.00 0.00 0.00 4.63
512 513 1.359475 GTCCATCGCCGTCTACCTC 59.641 63.158 0.00 0.00 0.00 3.85
513 514 2.478890 CGTCCATCGCCGTCTACCT 61.479 63.158 0.00 0.00 0.00 3.08
514 515 1.793134 ATCGTCCATCGCCGTCTACC 61.793 60.000 0.00 0.00 39.67 3.18
515 516 0.385723 GATCGTCCATCGCCGTCTAC 60.386 60.000 0.00 0.00 39.67 2.59
517 518 2.722487 GATCGTCCATCGCCGTCT 59.278 61.111 0.00 0.00 39.67 4.18
518 519 2.354773 GGATCGTCCATCGCCGTC 60.355 66.667 0.00 0.00 36.28 4.79
519 520 3.912907 GGGATCGTCCATCGCCGT 61.913 66.667 6.41 0.00 38.64 5.68
530 531 2.511600 GGCACTCCAACGGGATCG 60.512 66.667 0.00 0.00 43.91 3.69
531 532 2.124695 GGGCACTCCAACGGGATC 60.125 66.667 0.00 0.00 43.91 3.36
540 541 4.388499 TCTTTCGGCGGGCACTCC 62.388 66.667 7.21 0.00 0.00 3.85
542 543 3.469863 TTGTCTTTCGGCGGGCACT 62.470 57.895 7.21 0.00 0.00 4.40
543 544 2.966309 CTTGTCTTTCGGCGGGCAC 61.966 63.158 7.21 0.00 0.00 5.01
544 545 2.668212 CTTGTCTTTCGGCGGGCA 60.668 61.111 7.21 0.00 0.00 5.36
545 546 4.103103 GCTTGTCTTTCGGCGGGC 62.103 66.667 7.21 0.00 0.00 6.13
546 547 2.515996 TAGGCTTGTCTTTCGGCGGG 62.516 60.000 7.21 0.00 0.00 6.13
548 549 0.721718 CTTAGGCTTGTCTTTCGGCG 59.278 55.000 0.00 0.00 0.00 6.46
549 550 2.003301 CTCTTAGGCTTGTCTTTCGGC 58.997 52.381 0.00 0.00 0.00 5.54
550 551 2.622436 CCTCTTAGGCTTGTCTTTCGG 58.378 52.381 0.00 0.00 0.00 4.30
551 552 2.622436 CCCTCTTAGGCTTGTCTTTCG 58.378 52.381 0.00 0.00 32.73 3.46
552 553 2.572104 TCCCCTCTTAGGCTTGTCTTTC 59.428 50.000 0.00 0.00 32.73 2.62
554 555 2.192263 CTCCCCTCTTAGGCTTGTCTT 58.808 52.381 0.00 0.00 32.73 3.01
555 556 1.079658 ACTCCCCTCTTAGGCTTGTCT 59.920 52.381 0.00 0.00 32.73 3.41
556 557 1.574263 ACTCCCCTCTTAGGCTTGTC 58.426 55.000 0.00 0.00 32.73 3.18
557 558 2.315155 TCTACTCCCCTCTTAGGCTTGT 59.685 50.000 0.00 0.00 32.73 3.16
558 559 2.962421 CTCTACTCCCCTCTTAGGCTTG 59.038 54.545 0.00 0.00 32.73 4.01
559 560 2.860041 TCTCTACTCCCCTCTTAGGCTT 59.140 50.000 0.00 0.00 32.73 4.35
560 561 2.445525 CTCTCTACTCCCCTCTTAGGCT 59.554 54.545 0.00 0.00 32.73 4.58
562 563 3.073946 CCTCTCTCTACTCCCCTCTTAGG 59.926 56.522 0.00 0.00 34.30 2.69
563 564 3.977999 TCCTCTCTCTACTCCCCTCTTAG 59.022 52.174 0.00 0.00 0.00 2.18
565 566 2.866515 TCCTCTCTCTACTCCCCTCTT 58.133 52.381 0.00 0.00 0.00 2.85
567 568 3.895041 CAAATCCTCTCTCTACTCCCCTC 59.105 52.174 0.00 0.00 0.00 4.30
568 569 3.533907 TCAAATCCTCTCTCTACTCCCCT 59.466 47.826 0.00 0.00 0.00 4.79
569 570 3.895041 CTCAAATCCTCTCTCTACTCCCC 59.105 52.174 0.00 0.00 0.00 4.81
571 572 4.798882 TCCTCAAATCCTCTCTCTACTCC 58.201 47.826 0.00 0.00 0.00 3.85
572 573 4.278419 GCTCCTCAAATCCTCTCTCTACTC 59.722 50.000 0.00 0.00 0.00 2.59
574 575 3.320826 GGCTCCTCAAATCCTCTCTCTAC 59.679 52.174 0.00 0.00 0.00 2.59
575 576 3.206412 AGGCTCCTCAAATCCTCTCTCTA 59.794 47.826 0.00 0.00 0.00 2.43
577 578 2.365293 GAGGCTCCTCAAATCCTCTCTC 59.635 54.545 10.90 0.00 41.35 3.20
579 580 1.416030 GGAGGCTCCTCAAATCCTCTC 59.584 57.143 26.44 0.00 44.40 3.20
581 582 1.506025 AGGAGGCTCCTCAAATCCTC 58.494 55.000 30.46 0.78 45.66 3.71
582 583 3.748614 AGGAGGCTCCTCAAATCCT 57.251 52.632 30.46 6.00 45.66 3.24
591 592 1.276622 TGGTAGTTTGAGGAGGCTCC 58.723 55.000 26.42 26.42 36.58 4.70
592 593 3.636153 ATTGGTAGTTTGAGGAGGCTC 57.364 47.619 5.78 5.78 0.00 4.70
594 595 5.885912 TCAAATATTGGTAGTTTGAGGAGGC 59.114 40.000 0.00 0.00 37.05 4.70
595 596 7.829211 TCTTCAAATATTGGTAGTTTGAGGAGG 59.171 37.037 7.50 0.00 40.62 4.30
596 597 8.792830 TCTTCAAATATTGGTAGTTTGAGGAG 57.207 34.615 7.50 1.76 40.62 3.69
598 599 7.067494 CCCTCTTCAAATATTGGTAGTTTGAGG 59.933 40.741 0.00 0.00 41.31 3.86
599 600 7.829211 TCCCTCTTCAAATATTGGTAGTTTGAG 59.171 37.037 0.00 0.00 41.31 3.02
600 601 7.695055 TCCCTCTTCAAATATTGGTAGTTTGA 58.305 34.615 0.00 0.00 39.36 2.69
601 602 7.067494 CCTCCCTCTTCAAATATTGGTAGTTTG 59.933 40.741 0.00 0.00 34.90 2.93
604 605 5.132816 CCCTCCCTCTTCAAATATTGGTAGT 59.867 44.000 0.00 0.00 0.00 2.73
605 606 5.369699 TCCCTCCCTCTTCAAATATTGGTAG 59.630 44.000 0.00 0.00 0.00 3.18
607 608 4.079730 GTCCCTCCCTCTTCAAATATTGGT 60.080 45.833 0.00 0.00 0.00 3.67
608 609 4.079787 TGTCCCTCCCTCTTCAAATATTGG 60.080 45.833 0.00 0.00 0.00 3.16
609 610 5.116084 TGTCCCTCCCTCTTCAAATATTG 57.884 43.478 0.00 0.00 0.00 1.90
610 611 5.254032 ACTTGTCCCTCCCTCTTCAAATATT 59.746 40.000 0.00 0.00 0.00 1.28
614 615 2.418669 ACTTGTCCCTCCCTCTTCAAA 58.581 47.619 0.00 0.00 0.00 2.69
615 616 2.118403 ACTTGTCCCTCCCTCTTCAA 57.882 50.000 0.00 0.00 0.00 2.69
616 617 2.106511 CAAACTTGTCCCTCCCTCTTCA 59.893 50.000 0.00 0.00 0.00 3.02
617 618 2.372172 TCAAACTTGTCCCTCCCTCTTC 59.628 50.000 0.00 0.00 0.00 2.87
618 619 2.373502 CTCAAACTTGTCCCTCCCTCTT 59.626 50.000 0.00 0.00 0.00 2.85
620 621 1.003696 CCTCAAACTTGTCCCTCCCTC 59.996 57.143 0.00 0.00 0.00 4.30
622 623 1.064825 TCCTCAAACTTGTCCCTCCC 58.935 55.000 0.00 0.00 0.00 4.30
623 624 1.700186 AGTCCTCAAACTTGTCCCTCC 59.300 52.381 0.00 0.00 0.00 4.30
624 625 3.493767 AAGTCCTCAAACTTGTCCCTC 57.506 47.619 0.00 0.00 38.06 4.30
626 627 5.561679 AGAATAAGTCCTCAAACTTGTCCC 58.438 41.667 0.00 0.00 39.74 4.46
629 630 8.519799 TTTGAAGAATAAGTCCTCAAACTTGT 57.480 30.769 0.00 0.00 40.31 3.16
634 635 8.342634 CGAAAGTTTGAAGAATAAGTCCTCAAA 58.657 33.333 0.00 0.00 42.06 2.69
636 637 7.214381 TCGAAAGTTTGAAGAATAAGTCCTCA 58.786 34.615 0.00 0.00 0.00 3.86
639 640 6.128254 CCCTCGAAAGTTTGAAGAATAAGTCC 60.128 42.308 0.00 0.00 0.00 3.85
640 641 6.649557 TCCCTCGAAAGTTTGAAGAATAAGTC 59.350 38.462 0.00 0.00 0.00 3.01
641 642 6.531021 TCCCTCGAAAGTTTGAAGAATAAGT 58.469 36.000 0.00 0.00 0.00 2.24
642 643 7.435068 TTCCCTCGAAAGTTTGAAGAATAAG 57.565 36.000 0.00 0.00 0.00 1.73
644 645 9.509956 TTTATTCCCTCGAAAGTTTGAAGAATA 57.490 29.630 0.00 5.00 31.36 1.75
645 646 7.996098 TTATTCCCTCGAAAGTTTGAAGAAT 57.004 32.000 0.00 5.79 32.58 2.40
646 647 7.717875 TCTTTATTCCCTCGAAAGTTTGAAGAA 59.282 33.333 0.00 0.00 32.98 2.52
647 648 7.221450 TCTTTATTCCCTCGAAAGTTTGAAGA 58.779 34.615 0.00 0.00 32.98 2.87
648 649 7.435068 TCTTTATTCCCTCGAAAGTTTGAAG 57.565 36.000 0.00 0.00 32.98 3.02
649 650 7.811117 TTCTTTATTCCCTCGAAAGTTTGAA 57.189 32.000 0.00 0.00 32.98 2.69
651 652 8.915654 CAAATTCTTTATTCCCTCGAAAGTTTG 58.084 33.333 0.00 0.00 32.98 2.93
652 653 8.856103 TCAAATTCTTTATTCCCTCGAAAGTTT 58.144 29.630 0.00 0.00 32.98 2.66
653 654 8.404107 TCAAATTCTTTATTCCCTCGAAAGTT 57.596 30.769 0.00 0.00 32.98 2.66
654 655 7.996098 TCAAATTCTTTATTCCCTCGAAAGT 57.004 32.000 0.00 0.00 32.98 2.66
655 656 8.730680 TCTTCAAATTCTTTATTCCCTCGAAAG 58.269 33.333 0.00 0.00 0.00 2.62
656 657 8.630054 TCTTCAAATTCTTTATTCCCTCGAAA 57.370 30.769 0.00 0.00 0.00 3.46
658 659 8.630054 TTTCTTCAAATTCTTTATTCCCTCGA 57.370 30.769 0.00 0.00 0.00 4.04
659 660 9.346725 CTTTTCTTCAAATTCTTTATTCCCTCG 57.653 33.333 0.00 0.00 0.00 4.63
660 661 9.645059 CCTTTTCTTCAAATTCTTTATTCCCTC 57.355 33.333 0.00 0.00 0.00 4.30
661 662 8.097038 GCCTTTTCTTCAAATTCTTTATTCCCT 58.903 33.333 0.00 0.00 0.00 4.20
665 666 9.645059 GCTAGCCTTTTCTTCAAATTCTTTATT 57.355 29.630 2.29 0.00 0.00 1.40
666 667 9.029368 AGCTAGCCTTTTCTTCAAATTCTTTAT 57.971 29.630 12.13 0.00 0.00 1.40
668 669 7.295322 AGCTAGCCTTTTCTTCAAATTCTTT 57.705 32.000 12.13 0.00 0.00 2.52
669 670 6.348868 CGAGCTAGCCTTTTCTTCAAATTCTT 60.349 38.462 12.13 0.00 0.00 2.52
670 671 5.123027 CGAGCTAGCCTTTTCTTCAAATTCT 59.877 40.000 12.13 0.00 0.00 2.40
671 672 5.327891 CGAGCTAGCCTTTTCTTCAAATTC 58.672 41.667 12.13 0.00 0.00 2.17
672 673 4.156739 CCGAGCTAGCCTTTTCTTCAAATT 59.843 41.667 12.13 0.00 0.00 1.82
673 674 3.691609 CCGAGCTAGCCTTTTCTTCAAAT 59.308 43.478 12.13 0.00 0.00 2.32
674 675 3.074412 CCGAGCTAGCCTTTTCTTCAAA 58.926 45.455 12.13 0.00 0.00 2.69
675 676 2.038557 ACCGAGCTAGCCTTTTCTTCAA 59.961 45.455 12.13 0.00 0.00 2.69
677 678 2.003301 CACCGAGCTAGCCTTTTCTTC 58.997 52.381 12.13 0.00 0.00 2.87
678 679 1.348036 ACACCGAGCTAGCCTTTTCTT 59.652 47.619 12.13 0.00 0.00 2.52
680 681 1.809684 AACACCGAGCTAGCCTTTTC 58.190 50.000 12.13 0.81 0.00 2.29
681 682 3.412237 TTAACACCGAGCTAGCCTTTT 57.588 42.857 12.13 0.00 0.00 2.27
683 684 3.335579 CTTTTAACACCGAGCTAGCCTT 58.664 45.455 12.13 0.00 0.00 4.35
685 686 1.397343 GCTTTTAACACCGAGCTAGCC 59.603 52.381 12.13 1.79 32.54 3.93
686 687 2.073816 TGCTTTTAACACCGAGCTAGC 58.926 47.619 6.62 6.62 36.16 3.42
687 688 4.184629 AGATGCTTTTAACACCGAGCTAG 58.815 43.478 0.00 0.00 36.16 3.42
688 689 4.181578 GAGATGCTTTTAACACCGAGCTA 58.818 43.478 0.00 0.00 36.16 3.32
689 690 3.003480 GAGATGCTTTTAACACCGAGCT 58.997 45.455 0.00 0.00 36.16 4.09
690 691 2.222819 CGAGATGCTTTTAACACCGAGC 60.223 50.000 0.00 0.00 35.74 5.03
691 692 3.250744 TCGAGATGCTTTTAACACCGAG 58.749 45.455 0.00 0.00 0.00 4.63
692 693 3.306917 TCGAGATGCTTTTAACACCGA 57.693 42.857 0.00 0.00 0.00 4.69
693 694 4.600012 ATTCGAGATGCTTTTAACACCG 57.400 40.909 0.00 0.00 0.00 4.94
694 695 6.961554 CAGTTATTCGAGATGCTTTTAACACC 59.038 38.462 0.00 0.00 0.00 4.16
696 697 7.148474 GGTCAGTTATTCGAGATGCTTTTAACA 60.148 37.037 0.00 0.00 0.00 2.41
697 698 7.064728 AGGTCAGTTATTCGAGATGCTTTTAAC 59.935 37.037 0.00 0.00 0.00 2.01
698 699 7.103641 AGGTCAGTTATTCGAGATGCTTTTAA 58.896 34.615 0.00 0.00 0.00 1.52
699 700 6.640518 AGGTCAGTTATTCGAGATGCTTTTA 58.359 36.000 0.00 0.00 0.00 1.52
700 701 5.491982 AGGTCAGTTATTCGAGATGCTTTT 58.508 37.500 0.00 0.00 0.00 2.27
701 702 5.091261 AGGTCAGTTATTCGAGATGCTTT 57.909 39.130 0.00 0.00 0.00 3.51
702 703 4.744795 AGGTCAGTTATTCGAGATGCTT 57.255 40.909 0.00 0.00 0.00 3.91
703 704 5.854010 TTAGGTCAGTTATTCGAGATGCT 57.146 39.130 0.00 0.00 0.00 3.79
705 706 9.708222 CAAAATTTAGGTCAGTTATTCGAGATG 57.292 33.333 0.00 0.00 0.00 2.90
706 707 8.893727 CCAAAATTTAGGTCAGTTATTCGAGAT 58.106 33.333 0.00 0.00 0.00 2.75
708 709 6.967199 GCCAAAATTTAGGTCAGTTATTCGAG 59.033 38.462 0.00 0.00 0.00 4.04
710 711 6.852664 AGCCAAAATTTAGGTCAGTTATTCG 58.147 36.000 0.00 0.00 0.00 3.34
711 712 7.826690 TGAGCCAAAATTTAGGTCAGTTATTC 58.173 34.615 15.33 0.00 0.00 1.75
712 713 7.775053 TGAGCCAAAATTTAGGTCAGTTATT 57.225 32.000 15.33 0.00 0.00 1.40
713 714 7.669722 TCTTGAGCCAAAATTTAGGTCAGTTAT 59.330 33.333 17.42 0.00 0.00 1.89
714 715 7.001674 TCTTGAGCCAAAATTTAGGTCAGTTA 58.998 34.615 17.42 7.58 0.00 2.24
715 716 5.833131 TCTTGAGCCAAAATTTAGGTCAGTT 59.167 36.000 17.42 0.00 0.00 3.16
716 717 5.241728 GTCTTGAGCCAAAATTTAGGTCAGT 59.758 40.000 17.42 0.00 0.00 3.41
717 718 5.335976 GGTCTTGAGCCAAAATTTAGGTCAG 60.336 44.000 17.42 13.51 0.00 3.51
718 719 4.522789 GGTCTTGAGCCAAAATTTAGGTCA 59.477 41.667 15.33 15.33 0.00 4.02
720 721 4.740902 AGGTCTTGAGCCAAAATTTAGGT 58.259 39.130 0.00 0.00 0.00 3.08
721 722 5.728637 AAGGTCTTGAGCCAAAATTTAGG 57.271 39.130 0.00 0.00 0.00 2.69
727 728 7.118496 TCAATTTTAAGGTCTTGAGCCAAAA 57.882 32.000 10.28 10.28 0.00 2.44
728 729 6.723298 TCAATTTTAAGGTCTTGAGCCAAA 57.277 33.333 0.00 0.00 0.00 3.28
729 730 6.723298 TTCAATTTTAAGGTCTTGAGCCAA 57.277 33.333 0.00 0.00 0.00 4.52
730 731 6.723298 TTTCAATTTTAAGGTCTTGAGCCA 57.277 33.333 0.00 0.00 0.00 4.75
731 732 8.498358 CAATTTTCAATTTTAAGGTCTTGAGCC 58.502 33.333 0.00 0.00 0.00 4.70
732 733 9.260002 TCAATTTTCAATTTTAAGGTCTTGAGC 57.740 29.630 0.00 0.00 0.00 4.26
735 736 8.992073 CCCTCAATTTTCAATTTTAAGGTCTTG 58.008 33.333 0.00 0.00 0.00 3.02
736 737 8.713971 ACCCTCAATTTTCAATTTTAAGGTCTT 58.286 29.630 0.00 0.00 0.00 3.01
737 738 8.262601 ACCCTCAATTTTCAATTTTAAGGTCT 57.737 30.769 0.00 0.00 0.00 3.85
738 739 8.902540 AACCCTCAATTTTCAATTTTAAGGTC 57.097 30.769 0.00 0.00 0.00 3.85
807 808 3.277715 GGCAAATCTTTCTCCCTCTCTG 58.722 50.000 0.00 0.00 0.00 3.35
808 809 2.915604 TGGCAAATCTTTCTCCCTCTCT 59.084 45.455 0.00 0.00 0.00 3.10
809 810 3.013219 GTGGCAAATCTTTCTCCCTCTC 58.987 50.000 0.00 0.00 0.00 3.20
881 882 1.254284 CCTGCGAAGGACAGAGGAGT 61.254 60.000 1.89 0.00 37.32 3.85
889 890 0.534203 TGGACAAACCTGCGAAGGAC 60.534 55.000 19.18 1.67 39.86 3.85
1263 1269 0.803768 CCATCAGCACTTCCTCGACG 60.804 60.000 0.00 0.00 0.00 5.12
1308 1314 2.202919 TCGTCATCCATGCTGCCG 60.203 61.111 0.00 0.00 0.00 5.69
1450 1476 4.710695 CTGCGTACACGGCGACCA 62.711 66.667 16.62 1.16 40.23 4.02
1491 1522 4.937201 ATGTTGGCGATCATGAGTAGTA 57.063 40.909 0.09 0.00 0.00 1.82
1493 1524 4.571984 TGAAATGTTGGCGATCATGAGTAG 59.428 41.667 0.09 0.00 0.00 2.57
1518 1549 2.864343 AGACGTGTGTTTAGTGCTCAAC 59.136 45.455 0.00 0.00 0.00 3.18
1519 1550 2.863740 CAGACGTGTGTTTAGTGCTCAA 59.136 45.455 4.19 0.00 0.00 3.02
1520 1551 2.469826 CAGACGTGTGTTTAGTGCTCA 58.530 47.619 4.19 0.00 0.00 4.26
1521 1552 1.792949 CCAGACGTGTGTTTAGTGCTC 59.207 52.381 12.16 0.00 0.00 4.26
1522 1553 1.138266 ACCAGACGTGTGTTTAGTGCT 59.862 47.619 12.16 0.00 0.00 4.40
1525 1556 3.864243 TGAAACCAGACGTGTGTTTAGT 58.136 40.909 12.16 0.00 31.27 2.24
1530 1561 2.912771 TGAATGAAACCAGACGTGTGT 58.087 42.857 12.16 0.00 0.00 3.72
1531 1562 3.250762 ACATGAATGAAACCAGACGTGTG 59.749 43.478 5.57 5.57 0.00 3.82
1533 1564 3.423515 CGACATGAATGAAACCAGACGTG 60.424 47.826 0.00 0.00 0.00 4.49
1660 1698 4.410743 GGCAGTTGAGCTTGCGCC 62.411 66.667 4.18 0.46 36.60 6.53
1681 1719 0.813610 TCTGTTGTGTGTCCGCCTTG 60.814 55.000 0.00 0.00 0.00 3.61
1705 1743 1.648467 GAACACGCATGCCTTCTCCC 61.648 60.000 13.15 0.00 0.00 4.30
1731 1771 5.686753 TGTAGCCTAACTGAAGGTGAAAAA 58.313 37.500 3.46 0.00 39.02 1.94
1736 1776 2.939103 GCATGTAGCCTAACTGAAGGTG 59.061 50.000 0.00 0.00 39.02 4.00
1737 1777 2.571653 TGCATGTAGCCTAACTGAAGGT 59.428 45.455 0.00 0.00 44.83 3.50
1739 1779 4.194640 ACATGCATGTAGCCTAACTGAAG 58.805 43.478 30.50 0.00 44.83 3.02
1740 1780 4.220693 ACATGCATGTAGCCTAACTGAA 57.779 40.909 30.50 0.00 44.83 3.02
1752 1792 2.598589 GCGTGAATGAAACATGCATGT 58.401 42.857 26.61 26.61 45.83 3.21
1757 1797 3.173599 GGTCATGCGTGAATGAAACATG 58.826 45.455 10.93 0.00 38.28 3.21
1758 1798 2.819019 TGGTCATGCGTGAATGAAACAT 59.181 40.909 10.93 0.00 38.28 2.71
1760 1800 2.987413 TGGTCATGCGTGAATGAAAC 57.013 45.000 10.93 0.00 38.28 2.78
1774 1814 4.096833 GCATTTGCATCTGACTATTGGTCA 59.903 41.667 2.68 2.68 45.49 4.02
1775 1815 4.498682 GGCATTTGCATCTGACTATTGGTC 60.499 45.833 4.74 0.00 44.36 4.02
1776 1816 3.382546 GGCATTTGCATCTGACTATTGGT 59.617 43.478 4.74 0.00 44.36 3.67
1777 1817 3.382227 TGGCATTTGCATCTGACTATTGG 59.618 43.478 4.74 0.00 44.36 3.16
1778 1818 4.499188 CCTGGCATTTGCATCTGACTATTG 60.499 45.833 4.74 0.00 44.36 1.90
1779 1819 3.635373 CCTGGCATTTGCATCTGACTATT 59.365 43.478 4.74 0.00 44.36 1.73
1781 1821 2.025981 ACCTGGCATTTGCATCTGACTA 60.026 45.455 4.74 0.00 44.36 2.59
1787 1827 1.273048 TGAACACCTGGCATTTGCATC 59.727 47.619 4.74 0.00 44.36 3.91
1916 1956 0.322906 GTTGGGCTCCTTCTTCCTGG 60.323 60.000 0.00 0.00 0.00 4.45
1974 2029 4.271816 CGCATCCGGGAGAGGTCG 62.272 72.222 0.00 0.00 0.00 4.79
2006 2061 2.049156 GCGGGTTTTGCTTGAGCC 60.049 61.111 0.00 0.00 41.18 4.70
2079 2143 2.429930 CCACCGTCCTTCTTGCCA 59.570 61.111 0.00 0.00 0.00 4.92
2081 2145 1.856265 CTTGCCACCGTCCTTCTTGC 61.856 60.000 0.00 0.00 0.00 4.01
2173 2237 2.847234 AGCCTTCCCACCGTCACA 60.847 61.111 0.00 0.00 0.00 3.58
2181 2248 4.355720 CCTGCTGCAGCCTTCCCA 62.356 66.667 34.64 14.99 41.18 4.37
2182 2249 4.357279 ACCTGCTGCAGCCTTCCC 62.357 66.667 34.64 8.07 41.18 3.97
2183 2250 3.060615 CACCTGCTGCAGCCTTCC 61.061 66.667 34.64 8.86 41.18 3.46
2193 2260 1.152483 AACATTGCCACCACCTGCT 60.152 52.632 0.00 0.00 0.00 4.24
2194 2261 1.005867 CAACATTGCCACCACCTGC 60.006 57.895 0.00 0.00 0.00 4.85
2235 2302 0.595095 CCAGTTGTTCAGCTGCCTTC 59.405 55.000 9.47 0.00 0.00 3.46
2252 2319 0.669318 CAGTTACTTCTTCGCCGCCA 60.669 55.000 0.00 0.00 0.00 5.69
2267 2334 3.511146 CCCCAGCATTTATTGTCACAGTT 59.489 43.478 0.00 0.00 0.00 3.16
2302 2369 0.107945 GCGCAATGGAGAGGAGACTT 60.108 55.000 0.30 0.00 44.43 3.01
2304 2371 0.809241 CAGCGCAATGGAGAGGAGAC 60.809 60.000 11.47 0.00 0.00 3.36
2305 2372 1.519246 CAGCGCAATGGAGAGGAGA 59.481 57.895 11.47 0.00 0.00 3.71
2307 2374 2.124983 GCAGCGCAATGGAGAGGA 60.125 61.111 11.47 0.00 0.00 3.71
2308 2375 3.207669 GGCAGCGCAATGGAGAGG 61.208 66.667 11.47 0.00 0.00 3.69
2309 2376 2.906182 TACGGCAGCGCAATGGAGAG 62.906 60.000 11.47 0.00 0.00 3.20
2310 2377 3.012859 TACGGCAGCGCAATGGAGA 62.013 57.895 11.47 0.00 0.00 3.71
2325 2392 4.099120 CCGTCAGAAAGAGAGAATGTACG 58.901 47.826 0.00 0.00 0.00 3.67
2338 2405 5.421277 TGAAGTTAAAGTCACCGTCAGAAA 58.579 37.500 0.00 0.00 0.00 2.52
2351 2418 9.278734 GAGAAACAAACTGAACTGAAGTTAAAG 57.721 33.333 0.00 0.38 36.87 1.85
2453 2526 1.190643 AAGTGCACCTAGAGCTCTCC 58.809 55.000 22.17 5.46 35.03 3.71
2762 2838 4.957266 GGTAAACAAACCCGCTGC 57.043 55.556 0.00 0.00 33.02 5.25
2771 2847 9.777008 AGATTCCTTTATTTATGGGGTAAACAA 57.223 29.630 0.00 0.00 35.23 2.83
2913 2989 4.202202 CCAGACACACTTAAAATTTGGGCA 60.202 41.667 0.00 0.00 0.00 5.36
2927 3003 4.595762 TCCAAGTAGTAACCAGACACAC 57.404 45.455 0.00 0.00 0.00 3.82
3187 3267 3.248602 GTCAGCACCCTTCATTATTAGCG 59.751 47.826 0.00 0.00 0.00 4.26
3188 3268 4.199310 TGTCAGCACCCTTCATTATTAGC 58.801 43.478 0.00 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.