Multiple sequence alignment - TraesCS2A01G057900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G057900 chr2A 100.000 3137 0 0 1 3137 24299484 24302620 0.000000e+00 5794.0
1 TraesCS2A01G057900 chr2A 85.851 523 58 11 1001 1509 65822210 65821690 2.750000e-150 542.0
2 TraesCS2A01G057900 chr2A 100.000 34 0 0 484 517 24299935 24299968 2.610000e-06 63.9
3 TraesCS2A01G057900 chr2A 100.000 34 0 0 452 485 24299967 24300000 2.610000e-06 63.9
4 TraesCS2A01G057900 chr2B 91.149 1706 103 28 484 2164 39195610 39193928 0.000000e+00 2270.0
5 TraesCS2A01G057900 chr2B 86.233 523 56 10 1001 1509 101489343 101488823 1.270000e-153 553.0
6 TraesCS2A01G057900 chr2B 91.892 370 14 8 127 485 39195939 39195575 1.300000e-138 503.0
7 TraesCS2A01G057900 chr2B 84.466 309 29 10 171 475 39191432 39191139 1.420000e-73 287.0
8 TraesCS2A01G057900 chr2B 93.243 74 2 1 3064 3137 474921480 474921410 4.280000e-19 106.0
9 TraesCS2A01G057900 chr2D 91.209 1604 103 19 863 2455 22502979 22504555 0.000000e+00 2146.0
10 TraesCS2A01G057900 chr2D 90.110 455 17 12 13 453 22502282 22502722 1.630000e-157 566.0
11 TraesCS2A01G057900 chr2D 85.468 523 60 10 1001 1509 68924070 68923550 5.960000e-147 531.0
12 TraesCS2A01G057900 chr7A 90.244 82 6 2 563 642 115736259 115736340 4.280000e-19 106.0
13 TraesCS2A01G057900 chr7A 87.778 90 7 4 563 648 26451618 26451529 5.540000e-18 102.0
14 TraesCS2A01G057900 chr7A 80.328 122 17 7 533 648 161730124 161730244 5.570000e-13 86.1
15 TraesCS2A01G057900 chr6B 93.243 74 2 1 3064 3137 404025194 404025264 4.280000e-19 106.0
16 TraesCS2A01G057900 chr5D 93.243 74 2 2 3064 3137 484115717 484115647 4.280000e-19 106.0
17 TraesCS2A01G057900 chr4A 93.243 74 2 1 3064 3137 550423305 550423235 4.280000e-19 106.0
18 TraesCS2A01G057900 chr3A 93.243 74 2 1 3064 3137 650013965 650014035 4.280000e-19 106.0
19 TraesCS2A01G057900 chr1D 93.243 74 2 1 3064 3137 459904167 459904237 4.280000e-19 106.0
20 TraesCS2A01G057900 chr1D 91.892 74 3 1 3064 3137 176210154 176210084 1.990000e-17 100.0
21 TraesCS2A01G057900 chr1D 91.892 74 3 1 3064 3137 254381451 254381521 1.990000e-17 100.0
22 TraesCS2A01G057900 chr1D 86.667 90 8 3 563 648 246416531 246416442 2.580000e-16 97.1
23 TraesCS2A01G057900 chr1D 83.019 106 13 5 548 648 314506390 314506285 1.200000e-14 91.6
24 TraesCS2A01G057900 chr6A 89.286 84 6 3 563 644 514356601 514356519 5.540000e-18 102.0
25 TraesCS2A01G057900 chr1A 86.957 92 10 2 553 642 397258633 397258542 5.540000e-18 102.0
26 TraesCS2A01G057900 chrUn 91.892 74 3 1 3064 3137 459459297 459459367 1.990000e-17 100.0
27 TraesCS2A01G057900 chr5A 84.848 99 10 5 554 648 660208404 660208307 9.260000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G057900 chr2A 24299484 24302620 3136 False 1973.933333 5794 100.0000 1 3137 3 chr2A.!!$F1 3136
1 TraesCS2A01G057900 chr2A 65821690 65822210 520 True 542.000000 542 85.8510 1001 1509 1 chr2A.!!$R1 508
2 TraesCS2A01G057900 chr2B 39191139 39195939 4800 True 1020.000000 2270 89.1690 127 2164 3 chr2B.!!$R3 2037
3 TraesCS2A01G057900 chr2B 101488823 101489343 520 True 553.000000 553 86.2330 1001 1509 1 chr2B.!!$R1 508
4 TraesCS2A01G057900 chr2D 22502282 22504555 2273 False 1356.000000 2146 90.6595 13 2455 2 chr2D.!!$F1 2442
5 TraesCS2A01G057900 chr2D 68923550 68924070 520 True 531.000000 531 85.4680 1001 1509 1 chr2D.!!$R1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 303 0.250338 GAAGATATGTGGACCGGGCC 60.250 60.0 23.7 23.7 0.0 5.80 F
967 1062 0.405585 TTCCCTCCCAGCTTGAAAGG 59.594 55.0 0.0 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 1817 0.310854 CAACTGGTTTTGGAGACGCC 59.689 55.0 0.00 0.0 37.10 5.68 R
2483 2638 0.036483 TTGCGCTTGAGCCAGATACA 60.036 50.0 9.73 0.0 37.91 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 58 5.073554 TGCATGGTAGATATCCAAACCTCAT 59.926 40.000 16.36 4.63 38.52 2.90
64 73 2.693591 ACCTCATATCTTTCGGCGAAGA 59.306 45.455 22.52 20.41 39.76 2.87
76 85 0.805614 GGCGAAGAAGAAAGAAGCCC 59.194 55.000 0.00 0.00 37.32 5.19
143 152 1.473257 GCATCGATGGTCTGCAGGTAA 60.473 52.381 26.00 0.00 35.96 2.85
145 154 2.890808 TCGATGGTCTGCAGGTAATC 57.109 50.000 15.13 12.70 0.00 1.75
146 155 1.412710 TCGATGGTCTGCAGGTAATCC 59.587 52.381 15.13 9.47 0.00 3.01
147 156 1.414181 CGATGGTCTGCAGGTAATCCT 59.586 52.381 15.13 0.00 46.37 3.24
282 302 0.468226 TGAAGATATGTGGACCGGGC 59.532 55.000 6.32 0.21 0.00 6.13
283 303 0.250338 GAAGATATGTGGACCGGGCC 60.250 60.000 23.70 23.70 0.00 5.80
284 304 2.030562 GATATGTGGACCGGGCCG 59.969 66.667 24.84 21.46 0.00 6.13
379 399 8.806146 GGGATTGATTATTGGTGTATATGCTTT 58.194 33.333 0.00 0.00 0.00 3.51
408 428 1.673033 GCCACTCGTGTATCTGCTTGT 60.673 52.381 0.00 0.00 0.00 3.16
413 433 2.926200 CTCGTGTATCTGCTTGTGAAGG 59.074 50.000 0.00 0.00 0.00 3.46
427 447 1.747355 GTGAAGGTGCCATTCTCCATG 59.253 52.381 2.21 0.00 0.00 3.66
462 482 0.803380 GCCACGTATACGCGACCTTT 60.803 55.000 24.64 0.54 44.43 3.11
463 483 1.632422 CCACGTATACGCGACCTTTT 58.368 50.000 24.64 0.00 44.43 2.27
464 484 1.994779 CCACGTATACGCGACCTTTTT 59.005 47.619 24.64 0.00 44.43 1.94
487 507 3.928375 TCCGGTGAGATAAAGTTTTACGC 59.072 43.478 0.00 0.00 0.00 4.42
491 511 4.201656 GGTGAGATAAAGTTTTACGCGACC 60.202 45.833 15.93 0.00 0.00 4.79
527 547 7.162062 GTGAGATAAAGTTTTAAATAGCGTGCG 59.838 37.037 0.00 0.00 0.00 5.34
529 549 7.916552 AGATAAAGTTTTAAATAGCGTGCGAT 58.083 30.769 0.00 0.00 0.00 4.58
530 550 7.850982 AGATAAAGTTTTAAATAGCGTGCGATG 59.149 33.333 0.00 0.00 0.00 3.84
531 551 4.273005 AGTTTTAAATAGCGTGCGATGG 57.727 40.909 0.00 0.00 0.00 3.51
532 552 2.748461 TTTAAATAGCGTGCGATGGC 57.252 45.000 0.00 0.00 40.52 4.40
552 572 4.398988 TGGCAAATAGTGACAGCTAAATGG 59.601 41.667 0.00 0.00 41.83 3.16
576 596 6.975197 GGAATTAGATCCAGTTTTGCTAAAGC 59.025 38.462 0.00 0.00 39.42 3.51
613 637 7.730084 TGCTCTAGATATTGCACATCTAAGTT 58.270 34.615 14.93 0.00 35.20 2.66
614 638 7.869937 TGCTCTAGATATTGCACATCTAAGTTC 59.130 37.037 14.93 7.91 35.20 3.01
616 640 9.409312 CTCTAGATATTGCACATCTAAGTTCTG 57.591 37.037 14.93 6.04 35.20 3.02
629 653 8.509690 ACATCTAAGTTCTGTGTCATTGATTTG 58.490 33.333 0.00 0.00 0.00 2.32
704 728 2.004733 CGAAATCACTTTACCGACCCC 58.995 52.381 0.00 0.00 0.00 4.95
713 737 3.824443 ACTTTACCGACCCCAAAATCTTG 59.176 43.478 0.00 0.00 0.00 3.02
714 738 3.791953 TTACCGACCCCAAAATCTTGA 57.208 42.857 0.00 0.00 34.14 3.02
715 739 2.899303 ACCGACCCCAAAATCTTGAT 57.101 45.000 0.00 0.00 34.14 2.57
803 870 4.402192 CTCGGTGCCACATACGAG 57.598 61.111 7.43 7.43 45.34 4.18
849 917 1.340017 GCCTTGACCTTATGTGCCTCA 60.340 52.381 0.00 0.00 0.00 3.86
870 953 3.133542 CAGAATCAGACAGGTGATAGCCA 59.866 47.826 0.00 0.00 36.07 4.75
886 969 6.912591 GTGATAGCCAGAATATTTTGTTTCCG 59.087 38.462 5.36 0.00 0.00 4.30
929 1012 2.193536 GGCGCCTCCTCTCTCTCTC 61.194 68.421 22.15 0.00 0.00 3.20
931 1014 1.447317 GCGCCTCCTCTCTCTCTCTG 61.447 65.000 0.00 0.00 0.00 3.35
967 1062 0.405585 TTCCCTCCCAGCTTGAAAGG 59.594 55.000 0.00 0.00 0.00 3.11
974 1069 1.341209 CCCAGCTTGAAAGGAAACCAC 59.659 52.381 0.00 0.00 0.00 4.16
975 1070 1.341209 CCAGCTTGAAAGGAAACCACC 59.659 52.381 0.00 0.00 0.00 4.61
976 1071 2.031120 CAGCTTGAAAGGAAACCACCA 58.969 47.619 0.00 0.00 0.00 4.17
995 1090 2.082231 CACCATCACCAGAGCTTCAAG 58.918 52.381 0.00 0.00 0.00 3.02
997 1092 2.906389 ACCATCACCAGAGCTTCAAGTA 59.094 45.455 0.00 0.00 0.00 2.24
1356 1466 4.403137 CGGTTCGCGTCGTACCCA 62.403 66.667 17.35 0.00 42.77 4.51
1518 1634 4.680237 TCTCCGCCTGCAACACCG 62.680 66.667 0.00 0.00 0.00 4.94
1562 1681 2.356818 TTTTCGCCGGCAAAACCAGG 62.357 55.000 28.98 7.38 39.03 4.45
1645 1764 2.832129 TCTCTAAAGCCAACCGATCAGT 59.168 45.455 0.00 0.00 0.00 3.41
1684 1803 2.613506 CCAAAACCAGTCGGGCGTC 61.614 63.158 0.00 0.00 42.05 5.19
1698 1817 1.878522 GCGTCTGGTGTCTATGCCG 60.879 63.158 0.00 0.00 0.00 5.69
1699 1818 1.226974 CGTCTGGTGTCTATGCCGG 60.227 63.158 0.00 0.00 0.00 6.13
1782 1901 2.892425 GTCTCCATGCCGCCTTCG 60.892 66.667 0.00 0.00 0.00 3.79
1831 1950 0.453390 GCCGCCTTCTCCAAAATCAG 59.547 55.000 0.00 0.00 0.00 2.90
1876 1995 1.131638 ATCAGCCGGTGGATATGTGT 58.868 50.000 1.90 0.00 0.00 3.72
1881 2000 0.594028 CCGGTGGATATGTGTCGTCG 60.594 60.000 0.00 0.00 0.00 5.12
1899 2018 0.460284 CGTCTCTGAAACCATCCGGG 60.460 60.000 0.00 0.00 44.81 5.73
1979 2098 1.878953 CCTGCCGGTGGACATAATAC 58.121 55.000 1.90 0.00 0.00 1.89
2061 2183 1.692749 ATATGGTGAGGCGGTGGGT 60.693 57.895 0.00 0.00 0.00 4.51
2095 2217 2.213499 CCATGACAGAAATCTACCGGC 58.787 52.381 0.00 0.00 0.00 6.13
2109 2231 1.147376 CCGGCGTCCCATTATCCAA 59.853 57.895 6.01 0.00 0.00 3.53
2110 2232 0.464735 CCGGCGTCCCATTATCCAAA 60.465 55.000 6.01 0.00 0.00 3.28
2136 2258 0.541863 CTGCCACCACCCCTAACTAG 59.458 60.000 0.00 0.00 0.00 2.57
2137 2259 1.223763 GCCACCACCCCTAACTAGC 59.776 63.158 0.00 0.00 0.00 3.42
2138 2260 1.272554 GCCACCACCCCTAACTAGCT 61.273 60.000 0.00 0.00 0.00 3.32
2139 2261 1.968255 GCCACCACCCCTAACTAGCTA 60.968 57.143 0.00 0.00 0.00 3.32
2147 2269 2.512705 CCCTAACTAGCTAGTACCCGG 58.487 57.143 26.29 20.82 34.99 5.73
2170 2292 8.410141 CCGGGTACATTGTTGAATAAATAACAT 58.590 33.333 0.00 0.00 36.75 2.71
2176 2298 8.924691 ACATTGTTGAATAAATAACATGTGCAC 58.075 29.630 10.75 10.75 36.75 4.57
2180 2302 6.487689 TGAATAAATAACATGTGCACGTCA 57.512 33.333 9.07 0.00 0.00 4.35
2291 2414 8.826293 AGTTGGCTTTACTACTAGATAAGAGT 57.174 34.615 0.00 0.00 0.00 3.24
2338 2489 6.399639 AGTTACCAAATGTTTTAGTGGTGG 57.600 37.500 4.46 0.00 44.13 4.61
2339 2490 5.894964 AGTTACCAAATGTTTTAGTGGTGGT 59.105 36.000 4.46 0.00 44.13 4.16
2349 2504 4.669206 TTTAGTGGTGGTTGTAAGTCGA 57.331 40.909 0.00 0.00 0.00 4.20
2401 2556 6.354794 TCAAAGCCTTTAGTACTTGAGCTA 57.645 37.500 0.00 0.00 0.00 3.32
2406 2561 4.403113 GCCTTTAGTACTTGAGCTACCTCT 59.597 45.833 0.00 0.00 38.93 3.69
2434 2589 3.039202 GATTGTGGCGGCGGTTCTG 62.039 63.158 9.78 0.00 0.00 3.02
2471 2626 3.536570 GAGATAAGTTCCTTGGTGCTCC 58.463 50.000 0.00 0.00 0.00 4.70
2495 2650 0.735978 CGCGTGTTGTATCTGGCTCA 60.736 55.000 0.00 0.00 0.00 4.26
2512 2667 1.398390 CTCAAGCGCAATAACAGGGTC 59.602 52.381 11.47 0.00 0.00 4.46
2513 2668 1.003118 TCAAGCGCAATAACAGGGTCT 59.997 47.619 11.47 0.00 0.00 3.85
2514 2669 1.812571 CAAGCGCAATAACAGGGTCTT 59.187 47.619 11.47 0.00 0.00 3.01
2515 2670 1.739067 AGCGCAATAACAGGGTCTTC 58.261 50.000 11.47 0.00 0.00 2.87
2516 2671 0.373716 GCGCAATAACAGGGTCTTCG 59.626 55.000 0.30 0.00 0.00 3.79
2517 2672 2.004583 CGCAATAACAGGGTCTTCGA 57.995 50.000 0.00 0.00 0.00 3.71
2518 2673 1.659098 CGCAATAACAGGGTCTTCGAC 59.341 52.381 0.00 0.00 0.00 4.20
2519 2674 2.695359 GCAATAACAGGGTCTTCGACA 58.305 47.619 0.00 0.00 33.68 4.35
2520 2675 3.071479 GCAATAACAGGGTCTTCGACAA 58.929 45.455 0.00 0.00 33.68 3.18
2521 2676 3.500680 GCAATAACAGGGTCTTCGACAAA 59.499 43.478 0.00 0.00 33.68 2.83
2522 2677 4.612939 GCAATAACAGGGTCTTCGACAAAC 60.613 45.833 0.00 0.00 33.68 2.93
2523 2678 2.702592 AACAGGGTCTTCGACAAACA 57.297 45.000 0.00 0.00 33.68 2.83
2524 2679 2.702592 ACAGGGTCTTCGACAAACAA 57.297 45.000 0.00 0.00 33.68 2.83
2525 2680 2.561569 ACAGGGTCTTCGACAAACAAG 58.438 47.619 0.00 0.00 33.68 3.16
2526 2681 1.873591 CAGGGTCTTCGACAAACAAGG 59.126 52.381 0.00 0.00 33.68 3.61
2527 2682 1.489230 AGGGTCTTCGACAAACAAGGT 59.511 47.619 0.00 0.00 33.68 3.50
2530 2685 2.032924 GGTCTTCGACAAACAAGGTTGG 59.967 50.000 2.59 0.00 33.68 3.77
2532 2687 2.680841 TCTTCGACAAACAAGGTTGGTG 59.319 45.455 2.59 0.00 32.50 4.17
2541 2696 2.268076 AAGGTTGGTGTCATGCCGC 61.268 57.895 0.00 0.00 0.00 6.53
2545 2700 2.203408 TGGTGTCATGCCGCCAAA 60.203 55.556 6.55 0.00 41.87 3.28
2550 2705 1.154225 GTCATGCCGCCAAAAGTCG 60.154 57.895 0.00 0.00 0.00 4.18
2551 2706 1.599518 TCATGCCGCCAAAAGTCGT 60.600 52.632 0.00 0.00 0.00 4.34
2553 2708 0.318614 CATGCCGCCAAAAGTCGTTT 60.319 50.000 0.00 0.00 0.00 3.60
2555 2710 1.724581 GCCGCCAAAAGTCGTTTCG 60.725 57.895 0.00 0.00 0.00 3.46
2556 2711 1.724581 CCGCCAAAAGTCGTTTCGC 60.725 57.895 0.00 0.00 0.00 4.70
2558 2713 2.354560 GCCAAAAGTCGTTTCGCGC 61.355 57.895 0.00 0.00 41.07 6.86
2559 2714 1.010574 CCAAAAGTCGTTTCGCGCA 60.011 52.632 8.75 0.00 41.07 6.09
2560 2715 0.385473 CCAAAAGTCGTTTCGCGCAT 60.385 50.000 8.75 0.00 41.07 4.73
2561 2716 0.967803 CAAAAGTCGTTTCGCGCATC 59.032 50.000 8.75 0.00 41.07 3.91
2562 2717 0.110373 AAAAGTCGTTTCGCGCATCC 60.110 50.000 8.75 0.00 41.07 3.51
2563 2718 2.222953 AAAGTCGTTTCGCGCATCCG 62.223 55.000 8.75 3.57 41.07 4.18
2564 2719 3.475774 GTCGTTTCGCGCATCCGT 61.476 61.111 8.75 0.00 41.07 4.69
2565 2720 3.474904 TCGTTTCGCGCATCCGTG 61.475 61.111 8.75 0.00 45.83 4.94
2576 2731 2.034879 CATCCGTGCCGACTTTGCT 61.035 57.895 0.00 0.00 0.00 3.91
2578 2733 0.889186 ATCCGTGCCGACTTTGCTTT 60.889 50.000 0.00 0.00 0.00 3.51
2608 2763 2.123425 TAGGGCTAGGCGAGGTGG 60.123 66.667 10.58 0.00 0.00 4.61
2624 2779 0.761802 GTGGGCCTGAAGGAGGATAG 59.238 60.000 4.53 0.00 46.33 2.08
2636 2791 2.769095 AGGAGGATAGCTCTTGTGTTCC 59.231 50.000 0.00 0.00 0.00 3.62
2649 2804 4.640201 TCTTGTGTTCCTTTTCTCTTGTGG 59.360 41.667 0.00 0.00 0.00 4.17
2650 2805 4.229304 TGTGTTCCTTTTCTCTTGTGGA 57.771 40.909 0.00 0.00 0.00 4.02
2661 2816 0.991146 TCTTGTGGAGCAGGCCATAA 59.009 50.000 5.01 0.00 40.68 1.90
2663 2818 0.323360 TTGTGGAGCAGGCCATAACC 60.323 55.000 5.01 3.58 40.68 2.85
2677 2832 2.358898 CCATAACCTGTGGTATGCTTGC 59.641 50.000 0.00 0.00 33.12 4.01
2686 2841 2.163613 GTGGTATGCTTGCCTTGTAACC 59.836 50.000 8.19 0.00 0.00 2.85
2698 2853 3.557264 GCCTTGTAACCTTGTGCTACTCT 60.557 47.826 0.00 0.00 0.00 3.24
2699 2854 4.246458 CCTTGTAACCTTGTGCTACTCTC 58.754 47.826 0.00 0.00 0.00 3.20
2710 2865 6.547880 CCTTGTGCTACTCTCTTCCTATCTTA 59.452 42.308 0.00 0.00 0.00 2.10
2715 2870 9.292195 GTGCTACTCTCTTCCTATCTTAATAGT 57.708 37.037 0.00 0.00 34.20 2.12
2758 2913 4.759693 ACTCATTTTTGCCACGATACTCAA 59.240 37.500 0.00 0.00 0.00 3.02
2760 2915 6.071952 ACTCATTTTTGCCACGATACTCAATT 60.072 34.615 0.00 0.00 0.00 2.32
2768 2923 3.427503 CCACGATACTCAATTTTGCCACC 60.428 47.826 0.00 0.00 0.00 4.61
2769 2924 3.190327 CACGATACTCAATTTTGCCACCA 59.810 43.478 0.00 0.00 0.00 4.17
2772 2927 4.858692 CGATACTCAATTTTGCCACCAAAG 59.141 41.667 0.00 0.00 41.58 2.77
2774 2929 4.326504 ACTCAATTTTGCCACCAAAGAG 57.673 40.909 0.00 0.00 41.58 2.85
2776 2931 4.162131 ACTCAATTTTGCCACCAAAGAGTT 59.838 37.500 0.00 0.00 39.20 3.01
2777 2932 5.096443 TCAATTTTGCCACCAAAGAGTTT 57.904 34.783 0.00 0.00 41.58 2.66
2778 2933 5.115480 TCAATTTTGCCACCAAAGAGTTTC 58.885 37.500 0.00 0.00 41.58 2.78
2779 2934 4.751767 ATTTTGCCACCAAAGAGTTTCA 57.248 36.364 0.00 0.00 41.58 2.69
2780 2935 3.799281 TTTGCCACCAAAGAGTTTCAG 57.201 42.857 0.00 0.00 36.09 3.02
2783 2938 1.000938 GCCACCAAAGAGTTTCAGCTG 60.001 52.381 7.63 7.63 0.00 4.24
2784 2939 1.000938 CCACCAAAGAGTTTCAGCTGC 60.001 52.381 9.47 0.00 0.00 5.25
2785 2940 1.952296 CACCAAAGAGTTTCAGCTGCT 59.048 47.619 9.47 0.00 0.00 4.24
2786 2941 2.031333 CACCAAAGAGTTTCAGCTGCTC 60.031 50.000 9.47 10.29 0.00 4.26
2787 2942 2.158696 ACCAAAGAGTTTCAGCTGCTCT 60.159 45.455 14.49 14.49 40.89 4.09
2789 2944 4.067896 CCAAAGAGTTTCAGCTGCTCTAA 58.932 43.478 18.94 2.43 38.50 2.10
2790 2945 4.516698 CCAAAGAGTTTCAGCTGCTCTAAA 59.483 41.667 18.94 8.22 38.50 1.85
2791 2946 5.009010 CCAAAGAGTTTCAGCTGCTCTAAAA 59.991 40.000 18.94 7.88 38.50 1.52
2792 2947 6.294397 CCAAAGAGTTTCAGCTGCTCTAAAAT 60.294 38.462 18.94 9.87 38.50 1.82
2793 2948 5.876612 AGAGTTTCAGCTGCTCTAAAATG 57.123 39.130 17.64 0.00 37.78 2.32
2794 2949 4.155644 AGAGTTTCAGCTGCTCTAAAATGC 59.844 41.667 17.64 6.29 37.78 3.56
2795 2950 3.192212 AGTTTCAGCTGCTCTAAAATGCC 59.808 43.478 9.47 0.00 0.00 4.40
2796 2951 2.495155 TCAGCTGCTCTAAAATGCCA 57.505 45.000 9.47 0.00 0.00 4.92
2797 2952 3.008835 TCAGCTGCTCTAAAATGCCAT 57.991 42.857 9.47 0.00 0.00 4.40
2798 2953 2.947652 TCAGCTGCTCTAAAATGCCATC 59.052 45.455 9.47 0.00 0.00 3.51
2799 2954 1.945394 AGCTGCTCTAAAATGCCATCG 59.055 47.619 0.00 0.00 0.00 3.84
2800 2955 1.672881 GCTGCTCTAAAATGCCATCGT 59.327 47.619 0.00 0.00 0.00 3.73
2801 2956 2.098117 GCTGCTCTAAAATGCCATCGTT 59.902 45.455 0.00 0.00 0.00 3.85
2802 2957 3.428045 GCTGCTCTAAAATGCCATCGTTT 60.428 43.478 0.00 0.00 33.08 3.60
2803 2958 4.095410 TGCTCTAAAATGCCATCGTTTG 57.905 40.909 0.00 0.00 32.14 2.93
2805 2960 3.734902 GCTCTAAAATGCCATCGTTTGGG 60.735 47.826 8.81 0.00 46.55 4.12
2806 2961 3.426615 TCTAAAATGCCATCGTTTGGGT 58.573 40.909 8.81 0.00 46.55 4.51
2807 2962 4.590918 TCTAAAATGCCATCGTTTGGGTA 58.409 39.130 8.81 0.00 46.55 3.69
2808 2963 5.197451 TCTAAAATGCCATCGTTTGGGTAT 58.803 37.500 8.81 0.00 46.55 2.73
2809 2964 6.358178 TCTAAAATGCCATCGTTTGGGTATA 58.642 36.000 8.81 0.00 46.55 1.47
2810 2965 4.911514 AAATGCCATCGTTTGGGTATAC 57.088 40.909 8.81 0.00 46.55 1.47
2811 2966 3.569194 ATGCCATCGTTTGGGTATACA 57.431 42.857 5.01 0.00 46.55 2.29
2812 2967 3.569194 TGCCATCGTTTGGGTATACAT 57.431 42.857 5.01 0.00 46.55 2.29
2813 2968 3.210227 TGCCATCGTTTGGGTATACATG 58.790 45.455 5.01 0.00 46.55 3.21
2814 2969 2.031157 GCCATCGTTTGGGTATACATGC 60.031 50.000 5.01 0.00 46.55 4.06
2815 2970 3.210227 CCATCGTTTGGGTATACATGCA 58.790 45.455 5.01 0.00 42.33 3.96
2816 2971 3.820467 CCATCGTTTGGGTATACATGCAT 59.180 43.478 5.01 0.00 42.33 3.96
2817 2972 4.320421 CCATCGTTTGGGTATACATGCATG 60.320 45.833 25.09 25.09 42.33 4.06
2818 2973 2.616376 TCGTTTGGGTATACATGCATGC 59.384 45.455 26.53 11.82 0.00 4.06
2819 2974 2.618241 CGTTTGGGTATACATGCATGCT 59.382 45.455 26.53 16.20 0.00 3.79
2820 2975 3.303990 CGTTTGGGTATACATGCATGCTC 60.304 47.826 26.53 10.67 0.00 4.26
2821 2976 3.574354 TTGGGTATACATGCATGCTCA 57.426 42.857 26.53 13.29 0.00 4.26
2822 2977 3.574354 TGGGTATACATGCATGCTCAA 57.426 42.857 26.53 10.13 0.00 3.02
2823 2978 3.895998 TGGGTATACATGCATGCTCAAA 58.104 40.909 26.53 7.60 0.00 2.69
2824 2979 4.276642 TGGGTATACATGCATGCTCAAAA 58.723 39.130 26.53 5.81 0.00 2.44
2825 2980 4.708909 TGGGTATACATGCATGCTCAAAAA 59.291 37.500 26.53 5.36 0.00 1.94
2845 3000 5.567138 AAAAAGCCATGTAGCACTATCAC 57.433 39.130 0.00 0.00 34.23 3.06
2846 3001 4.494091 AAAGCCATGTAGCACTATCACT 57.506 40.909 0.00 0.00 34.23 3.41
2847 3002 3.465742 AGCCATGTAGCACTATCACTG 57.534 47.619 0.00 0.00 34.23 3.66
2848 3003 2.768527 AGCCATGTAGCACTATCACTGT 59.231 45.455 0.00 0.00 34.23 3.55
2849 3004 3.198635 AGCCATGTAGCACTATCACTGTT 59.801 43.478 0.00 0.00 34.23 3.16
2850 3005 4.405680 AGCCATGTAGCACTATCACTGTTA 59.594 41.667 0.00 0.00 34.23 2.41
2851 3006 4.747108 GCCATGTAGCACTATCACTGTTAG 59.253 45.833 0.00 0.00 0.00 2.34
2852 3007 5.292765 CCATGTAGCACTATCACTGTTAGG 58.707 45.833 0.00 0.00 0.00 2.69
2853 3008 5.163405 CCATGTAGCACTATCACTGTTAGGT 60.163 44.000 0.00 0.00 0.00 3.08
2854 3009 5.578005 TGTAGCACTATCACTGTTAGGTC 57.422 43.478 0.00 0.00 0.00 3.85
2855 3010 5.014202 TGTAGCACTATCACTGTTAGGTCA 58.986 41.667 0.00 0.00 0.00 4.02
2856 3011 4.457834 AGCACTATCACTGTTAGGTCAC 57.542 45.455 0.00 0.00 0.00 3.67
2857 3012 3.832490 AGCACTATCACTGTTAGGTCACA 59.168 43.478 0.00 0.00 0.00 3.58
2864 3019 2.550830 CTGTTAGGTCACAGCCTGTT 57.449 50.000 0.00 0.00 37.96 3.16
2879 3034 4.883585 CAGCCTGTTGACCACATTATATGT 59.116 41.667 0.00 0.00 46.22 2.29
2888 3043 7.864108 TGACCACATTATATGTCCAAAAGAG 57.136 36.000 0.00 0.00 42.70 2.85
2890 3045 5.296780 ACCACATTATATGTCCAAAAGAGCG 59.703 40.000 0.00 0.00 42.70 5.03
2891 3046 5.527214 CCACATTATATGTCCAAAAGAGCGA 59.473 40.000 0.00 0.00 42.70 4.93
2892 3047 6.038161 CCACATTATATGTCCAAAAGAGCGAA 59.962 38.462 0.00 0.00 42.70 4.70
2893 3048 7.128331 CACATTATATGTCCAAAAGAGCGAAG 58.872 38.462 0.00 0.00 42.70 3.79
2894 3049 7.011389 CACATTATATGTCCAAAAGAGCGAAGA 59.989 37.037 0.00 0.00 42.70 2.87
2897 3052 3.194005 TGTCCAAAAGAGCGAAGAACT 57.806 42.857 0.00 0.00 0.00 3.01
2898 3053 4.330944 TGTCCAAAAGAGCGAAGAACTA 57.669 40.909 0.00 0.00 0.00 2.24
2899 3054 4.699637 TGTCCAAAAGAGCGAAGAACTAA 58.300 39.130 0.00 0.00 0.00 2.24
2900 3055 5.120399 TGTCCAAAAGAGCGAAGAACTAAA 58.880 37.500 0.00 0.00 0.00 1.85
2903 3058 5.820947 TCCAAAAGAGCGAAGAACTAAAACT 59.179 36.000 0.00 0.00 0.00 2.66
2914 3069 7.307455 GCGAAGAACTAAAACTTGTCAGAATCT 60.307 37.037 0.00 0.00 0.00 2.40
2918 3073 8.150945 AGAACTAAAACTTGTCAGAATCTGCTA 58.849 33.333 5.18 0.00 0.00 3.49
2925 3080 5.893255 ACTTGTCAGAATCTGCTATCTCTCT 59.107 40.000 5.18 0.00 0.00 3.10
2926 3081 6.039717 ACTTGTCAGAATCTGCTATCTCTCTC 59.960 42.308 5.18 0.00 0.00 3.20
2928 3083 5.764686 TGTCAGAATCTGCTATCTCTCTCTC 59.235 44.000 5.18 0.00 0.00 3.20
2931 3086 5.413833 CAGAATCTGCTATCTCTCTCTCTCC 59.586 48.000 0.00 0.00 0.00 3.71
2932 3087 4.999469 ATCTGCTATCTCTCTCTCTCCA 57.001 45.455 0.00 0.00 0.00 3.86
2933 3088 4.085357 TCTGCTATCTCTCTCTCTCCAC 57.915 50.000 0.00 0.00 0.00 4.02
2934 3089 3.716353 TCTGCTATCTCTCTCTCTCCACT 59.284 47.826 0.00 0.00 0.00 4.00
2937 3092 4.207165 GCTATCTCTCTCTCTCCACTTGT 58.793 47.826 0.00 0.00 0.00 3.16
2938 3093 4.644685 GCTATCTCTCTCTCTCCACTTGTT 59.355 45.833 0.00 0.00 0.00 2.83
2939 3094 5.825679 GCTATCTCTCTCTCTCCACTTGTTA 59.174 44.000 0.00 0.00 0.00 2.41
2940 3095 6.017109 GCTATCTCTCTCTCTCCACTTGTTAG 60.017 46.154 0.00 0.00 0.00 2.34
2942 3097 3.699038 CTCTCTCTCTCCACTTGTTAGGG 59.301 52.174 0.00 0.00 0.00 3.53
2955 3128 5.006386 ACTTGTTAGGGAAGATGCAAAGAG 58.994 41.667 0.00 0.00 0.00 2.85
2956 3129 3.347216 TGTTAGGGAAGATGCAAAGAGC 58.653 45.455 0.00 0.00 45.96 4.09
2973 3146 6.487103 CAAAGAGCGAAGAACTAAAACTTGT 58.513 36.000 0.00 0.00 0.00 3.16
2979 3152 4.608445 CGAAGAACTAAAACTTGTCGGCAG 60.608 45.833 0.00 0.00 0.00 4.85
2991 3164 1.527380 TCGGCAGGGTGGTTTGAAC 60.527 57.895 0.00 0.00 0.00 3.18
3009 3182 7.977293 GGTTTGAACCACTGTTTTAAATAGTGT 59.023 33.333 25.19 13.30 45.72 3.55
3011 3184 7.867305 TGAACCACTGTTTTAAATAGTGTGA 57.133 32.000 25.19 6.94 45.72 3.58
3018 3191 9.849607 CACTGTTTTAAATAGTGTGATATAGCG 57.150 33.333 21.19 0.00 43.22 4.26
3032 3205 8.679100 GTGTGATATAGCGTTTAGAGATATCCT 58.321 37.037 0.00 0.00 31.32 3.24
3034 3207 8.679100 GTGATATAGCGTTTAGAGATATCCTGT 58.321 37.037 0.00 0.00 31.32 4.00
3036 3209 3.983741 AGCGTTTAGAGATATCCTGTGC 58.016 45.455 0.00 0.00 0.00 4.57
3063 3236 6.306987 AGAAACTTTGGTCCTAACACATGAT 58.693 36.000 0.00 0.00 0.00 2.45
3064 3237 7.458397 AGAAACTTTGGTCCTAACACATGATA 58.542 34.615 0.00 0.00 0.00 2.15
3065 3238 7.390718 AGAAACTTTGGTCCTAACACATGATAC 59.609 37.037 0.00 0.00 0.00 2.24
3066 3239 5.497474 ACTTTGGTCCTAACACATGATACC 58.503 41.667 0.00 0.00 0.00 2.73
3067 3240 5.250774 ACTTTGGTCCTAACACATGATACCT 59.749 40.000 0.00 0.00 0.00 3.08
3068 3241 5.772393 TTGGTCCTAACACATGATACCTT 57.228 39.130 0.00 0.00 0.00 3.50
3069 3242 5.772393 TGGTCCTAACACATGATACCTTT 57.228 39.130 0.00 0.00 0.00 3.11
3074 3624 7.361799 GGTCCTAACACATGATACCTTTTTGAC 60.362 40.741 0.00 0.00 0.00 3.18
3079 3629 5.010617 ACACATGATACCTTTTTGACAACCC 59.989 40.000 0.00 0.00 0.00 4.11
3080 3630 4.217550 ACATGATACCTTTTTGACAACCCG 59.782 41.667 0.00 0.00 0.00 5.28
3083 3633 2.430248 ACCTTTTTGACAACCCGTCT 57.570 45.000 0.00 0.00 45.60 4.18
3084 3634 2.730382 ACCTTTTTGACAACCCGTCTT 58.270 42.857 0.00 0.00 45.60 3.01
3085 3635 3.093814 ACCTTTTTGACAACCCGTCTTT 58.906 40.909 0.00 0.00 45.60 2.52
3090 3640 3.768468 TTGACAACCCGTCTTTTTGTC 57.232 42.857 6.72 6.72 46.20 3.18
3091 3641 2.993937 TGACAACCCGTCTTTTTGTCT 58.006 42.857 13.26 0.00 46.18 3.41
3093 3643 2.940410 GACAACCCGTCTTTTTGTCTCA 59.060 45.455 6.47 0.00 43.80 3.27
3095 3645 2.943033 CAACCCGTCTTTTTGTCTCAGT 59.057 45.455 0.00 0.00 0.00 3.41
3097 3647 3.991367 ACCCGTCTTTTTGTCTCAGTAG 58.009 45.455 0.00 0.00 0.00 2.57
3102 3652 4.384247 CGTCTTTTTGTCTCAGTAGAGCTG 59.616 45.833 0.00 0.00 46.34 4.24
3103 3653 5.293560 GTCTTTTTGTCTCAGTAGAGCTGT 58.706 41.667 0.00 0.00 45.23 4.40
3107 3657 5.537300 TTTGTCTCAGTAGAGCTGTCTTT 57.463 39.130 0.00 0.00 45.23 2.52
3108 3658 4.775058 TGTCTCAGTAGAGCTGTCTTTC 57.225 45.455 0.00 0.00 45.23 2.62
3110 3660 4.217334 TGTCTCAGTAGAGCTGTCTTTCAG 59.783 45.833 0.00 0.00 45.23 3.02
3111 3661 4.217550 GTCTCAGTAGAGCTGTCTTTCAGT 59.782 45.833 0.00 0.00 45.23 3.41
3114 3664 2.028567 AGTAGAGCTGTCTTTCAGTGGC 60.029 50.000 0.00 0.00 45.23 5.01
3115 3665 0.761187 AGAGCTGTCTTTCAGTGGCA 59.239 50.000 0.00 0.00 45.23 4.92
3117 3667 1.467734 GAGCTGTCTTTCAGTGGCATG 59.532 52.381 0.00 0.00 45.23 4.06
3118 3668 1.202855 AGCTGTCTTTCAGTGGCATGT 60.203 47.619 0.00 0.00 45.23 3.21
3119 3669 1.610522 GCTGTCTTTCAGTGGCATGTT 59.389 47.619 0.00 0.00 45.23 2.71
3120 3670 2.035066 GCTGTCTTTCAGTGGCATGTTT 59.965 45.455 0.00 0.00 45.23 2.83
3122 3672 3.286353 TGTCTTTCAGTGGCATGTTTCA 58.714 40.909 0.00 0.00 0.00 2.69
3123 3673 3.316029 TGTCTTTCAGTGGCATGTTTCAG 59.684 43.478 0.00 0.00 0.00 3.02
3124 3674 3.316308 GTCTTTCAGTGGCATGTTTCAGT 59.684 43.478 0.00 0.00 0.00 3.41
3126 3676 1.896220 TCAGTGGCATGTTTCAGTCC 58.104 50.000 0.00 0.00 0.00 3.85
3127 3677 1.421268 TCAGTGGCATGTTTCAGTCCT 59.579 47.619 0.00 0.00 0.00 3.85
3128 3678 1.808945 CAGTGGCATGTTTCAGTCCTC 59.191 52.381 0.00 0.00 0.00 3.71
3129 3679 1.701847 AGTGGCATGTTTCAGTCCTCT 59.298 47.619 0.00 0.00 0.00 3.69
3131 3681 2.485814 GTGGCATGTTTCAGTCCTCTTC 59.514 50.000 0.00 0.00 0.00 2.87
3132 3682 2.087646 GGCATGTTTCAGTCCTCTTCC 58.912 52.381 0.00 0.00 0.00 3.46
3133 3683 2.290577 GGCATGTTTCAGTCCTCTTCCT 60.291 50.000 0.00 0.00 0.00 3.36
3134 3684 3.006247 GCATGTTTCAGTCCTCTTCCTC 58.994 50.000 0.00 0.00 0.00 3.71
3135 3685 3.557898 GCATGTTTCAGTCCTCTTCCTCA 60.558 47.826 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.134220 TGACCCGCACTGAGTTTTTCT 60.134 47.619 0.00 0.00 0.00 2.52
1 2 1.002792 GTGACCCGCACTGAGTTTTTC 60.003 52.381 0.00 0.00 44.27 2.29
2 3 1.021968 GTGACCCGCACTGAGTTTTT 58.978 50.000 0.00 0.00 44.27 1.94
3 4 2.702847 GTGACCCGCACTGAGTTTT 58.297 52.632 0.00 0.00 44.27 2.43
4 5 4.456806 GTGACCCGCACTGAGTTT 57.543 55.556 0.00 0.00 44.27 2.66
49 58 5.068234 TCTTTCTTCTTCGCCGAAAGATA 57.932 39.130 0.00 0.00 44.37 1.98
64 73 2.586648 ATCCGTTGGGCTTCTTTCTT 57.413 45.000 0.00 0.00 0.00 2.52
76 85 9.496873 TTTATATATCCTGTGGTTTATCCGTTG 57.503 33.333 0.00 0.00 39.52 4.10
143 152 2.042831 GGCGTTTCAGCAGCAGGAT 61.043 57.895 0.00 0.00 39.27 3.24
145 154 1.870055 AATGGCGTTTCAGCAGCAGG 61.870 55.000 0.00 0.00 39.27 4.85
146 155 0.731514 CAATGGCGTTTCAGCAGCAG 60.732 55.000 0.00 0.00 39.27 4.24
147 156 1.286570 CAATGGCGTTTCAGCAGCA 59.713 52.632 0.00 0.00 39.27 4.41
148 157 0.730494 GACAATGGCGTTTCAGCAGC 60.730 55.000 0.00 0.00 39.27 5.25
152 161 0.871722 TTCCGACAATGGCGTTTCAG 59.128 50.000 8.02 0.00 0.00 3.02
246 261 1.877637 TCACAAGCATGTTACACGCT 58.122 45.000 0.00 0.00 37.82 5.07
282 302 1.076777 ATGCATCAAGTTCCCCCGG 60.077 57.895 0.00 0.00 0.00 5.73
283 303 1.103398 GGATGCATCAAGTTCCCCCG 61.103 60.000 27.25 0.00 0.00 5.73
284 304 0.033208 TGGATGCATCAAGTTCCCCC 60.033 55.000 27.25 8.58 0.00 5.40
285 305 2.077687 ATGGATGCATCAAGTTCCCC 57.922 50.000 27.25 9.31 0.00 4.81
286 306 4.660168 AGATATGGATGCATCAAGTTCCC 58.340 43.478 27.25 10.06 0.00 3.97
287 307 5.564259 GCAAGATATGGATGCATCAAGTTCC 60.564 44.000 27.25 11.83 0.00 3.62
288 308 5.241064 AGCAAGATATGGATGCATCAAGTTC 59.759 40.000 27.25 16.55 0.00 3.01
379 399 4.584743 AGATACACGAGTGGCATCTTCATA 59.415 41.667 13.40 0.00 34.76 2.15
380 400 3.386078 AGATACACGAGTGGCATCTTCAT 59.614 43.478 13.40 0.00 34.76 2.57
408 428 2.133281 CATGGAGAATGGCACCTTCA 57.867 50.000 3.86 3.23 32.10 3.02
427 447 4.055654 GCTGATCCGAGCCATTCC 57.944 61.111 0.00 0.00 32.35 3.01
462 482 6.566376 GCGTAAAACTTTATCTCACCGGAAAA 60.566 38.462 9.46 0.00 0.00 2.29
463 483 5.106987 GCGTAAAACTTTATCTCACCGGAAA 60.107 40.000 9.46 0.00 0.00 3.13
464 484 4.389687 GCGTAAAACTTTATCTCACCGGAA 59.610 41.667 9.46 0.00 0.00 4.30
465 485 3.928375 GCGTAAAACTTTATCTCACCGGA 59.072 43.478 9.46 0.00 0.00 5.14
466 486 3.241868 CGCGTAAAACTTTATCTCACCGG 60.242 47.826 0.00 0.00 0.00 5.28
467 487 3.609373 TCGCGTAAAACTTTATCTCACCG 59.391 43.478 5.77 0.00 0.00 4.94
468 488 4.201656 GGTCGCGTAAAACTTTATCTCACC 60.202 45.833 5.77 0.00 0.00 4.02
469 489 4.624452 AGGTCGCGTAAAACTTTATCTCAC 59.376 41.667 5.77 0.00 0.00 3.51
470 490 4.813027 AGGTCGCGTAAAACTTTATCTCA 58.187 39.130 5.77 0.00 0.00 3.27
471 491 5.774878 AAGGTCGCGTAAAACTTTATCTC 57.225 39.130 5.77 0.00 0.00 2.75
472 492 6.549912 AAAAGGTCGCGTAAAACTTTATCT 57.450 33.333 9.42 0.00 31.71 1.98
527 547 5.818136 TTTAGCTGTCACTATTTGCCATC 57.182 39.130 0.00 0.00 0.00 3.51
529 549 4.398988 CCATTTAGCTGTCACTATTTGCCA 59.601 41.667 0.00 0.00 0.00 4.92
530 550 4.640201 TCCATTTAGCTGTCACTATTTGCC 59.360 41.667 0.00 0.00 0.00 4.52
531 551 5.818136 TCCATTTAGCTGTCACTATTTGC 57.182 39.130 0.00 0.00 0.00 3.68
532 552 9.941664 CTAATTCCATTTAGCTGTCACTATTTG 57.058 33.333 0.00 0.00 0.00 2.32
533 553 9.905713 TCTAATTCCATTTAGCTGTCACTATTT 57.094 29.630 0.00 0.00 0.00 1.40
535 555 9.717942 GATCTAATTCCATTTAGCTGTCACTAT 57.282 33.333 0.00 0.00 0.00 2.12
536 556 8.150945 GGATCTAATTCCATTTAGCTGTCACTA 58.849 37.037 0.00 0.00 35.72 2.74
537 557 6.995091 GGATCTAATTCCATTTAGCTGTCACT 59.005 38.462 0.00 0.00 35.72 3.41
538 558 6.767902 TGGATCTAATTCCATTTAGCTGTCAC 59.232 38.462 0.00 0.00 40.90 3.67
552 572 7.977490 GCTTTAGCAAAACTGGATCTAATTC 57.023 36.000 0.00 0.00 41.59 2.17
592 616 8.976471 CACAGAACTTAGATGTGCAATATCTAG 58.024 37.037 16.84 14.26 45.79 2.43
595 619 7.278646 TGACACAGAACTTAGATGTGCAATATC 59.721 37.037 13.59 0.00 46.49 1.63
596 620 7.105588 TGACACAGAACTTAGATGTGCAATAT 58.894 34.615 13.59 0.00 46.49 1.28
603 627 8.509690 CAAATCAATGACACAGAACTTAGATGT 58.490 33.333 0.00 0.00 0.00 3.06
609 633 9.903682 CTAATTCAAATCAATGACACAGAACTT 57.096 29.630 0.00 0.00 0.00 2.66
772 818 4.141981 TGGCACCGAGTTTATCCGTAAATA 60.142 41.667 0.00 0.00 32.76 1.40
779 846 2.038387 ATGTGGCACCGAGTTTATCC 57.962 50.000 16.26 0.00 0.00 2.59
785 852 0.963856 TCTCGTATGTGGCACCGAGT 60.964 55.000 30.19 13.45 45.19 4.18
829 897 1.340017 TGAGGCACATAAGGTCAAGGC 60.340 52.381 0.00 0.00 0.00 4.35
849 917 3.378512 TGGCTATCACCTGTCTGATTCT 58.621 45.455 0.00 0.00 32.86 2.40
870 953 4.616181 CGGCTCGGAAACAAAATATTCT 57.384 40.909 0.00 0.00 0.00 2.40
886 969 2.552743 GGGCAAATAAATACTCCGGCTC 59.447 50.000 0.00 0.00 0.00 4.70
921 1004 6.546972 TGTAACGTATATGCAGAGAGAGAG 57.453 41.667 0.00 0.00 0.00 3.20
929 1012 6.223852 AGGGAAGAATGTAACGTATATGCAG 58.776 40.000 0.00 0.00 0.00 4.41
931 1014 5.638234 GGAGGGAAGAATGTAACGTATATGC 59.362 44.000 0.00 0.00 0.00 3.14
967 1062 1.202879 TCTGGTGATGGTGGTGGTTTC 60.203 52.381 0.00 0.00 0.00 2.78
974 1069 0.325933 TGAAGCTCTGGTGATGGTGG 59.674 55.000 0.00 0.00 0.00 4.61
975 1070 2.082231 CTTGAAGCTCTGGTGATGGTG 58.918 52.381 0.00 0.00 0.00 4.17
976 1071 1.701847 ACTTGAAGCTCTGGTGATGGT 59.298 47.619 0.00 0.00 0.00 3.55
995 1090 1.884926 GCTCTGTGCGCCATCCTAC 60.885 63.158 4.18 0.00 0.00 3.18
1218 1316 1.524482 GAGGAGGATGTGGAGGCAC 59.476 63.158 0.00 0.00 0.00 5.01
1350 1460 0.955919 GCACCTTGCAGACTGGGTAC 60.956 60.000 4.26 0.00 44.26 3.34
1439 1549 3.063704 CGGCTGGCTTTCCATGCA 61.064 61.111 0.00 0.00 42.51 3.96
1562 1681 1.524621 ACATCCGCATAGCCAGCAC 60.525 57.895 0.00 0.00 0.00 4.40
1645 1764 3.476552 GAGAAGTTGTCATGGACACCAA 58.523 45.455 0.00 0.00 42.60 3.67
1684 1803 2.586079 CGCCGGCATAGACACCAG 60.586 66.667 28.98 0.98 0.00 4.00
1698 1817 0.310854 CAACTGGTTTTGGAGACGCC 59.689 55.000 0.00 0.00 37.10 5.68
1699 1818 1.305201 TCAACTGGTTTTGGAGACGC 58.695 50.000 0.00 0.00 0.00 5.19
1789 1908 4.100084 CACCTCATGCCCGGCTGA 62.100 66.667 11.61 10.69 0.00 4.26
1831 1950 3.118454 CGACACATGTCCACCGGC 61.118 66.667 0.00 0.00 41.86 6.13
1876 1995 1.201647 GGATGGTTTCAGAGACGACGA 59.798 52.381 0.00 0.00 0.00 4.20
1881 2000 0.744771 GCCCGGATGGTTTCAGAGAC 60.745 60.000 0.73 0.00 36.04 3.36
1947 2066 1.078143 GGCAGGCTTTGGAGACGAT 60.078 57.895 0.00 0.00 35.43 3.73
1979 2098 2.887568 GAGACGACGGCATGGCTG 60.888 66.667 18.09 13.01 41.29 4.85
2061 2183 4.517075 TCTGTCATGGTAAAAATGCGTTCA 59.483 37.500 0.00 0.00 0.00 3.18
2095 2217 3.733337 CTCCTCTTTGGATAATGGGACG 58.267 50.000 0.00 0.00 45.16 4.79
2109 2231 2.753029 GTGGTGGCAGCTCCTCTT 59.247 61.111 18.53 0.00 35.26 2.85
2110 2232 3.325753 GGTGGTGGCAGCTCCTCT 61.326 66.667 25.84 0.00 35.26 3.69
2153 2275 7.142021 ACGTGCACATGTTATTTATTCAACAA 58.858 30.769 18.64 0.00 38.11 2.83
2162 2284 4.752604 TGTACTGACGTGCACATGTTATTT 59.247 37.500 18.64 0.00 30.49 1.40
2170 2292 1.778334 GTCATGTACTGACGTGCACA 58.222 50.000 18.64 0.00 44.58 4.57
2180 2302 7.014905 TGCCGACTTATATTTAGGTCATGTACT 59.985 37.037 6.33 0.00 34.87 2.73
2187 2309 4.451435 GCCTTGCCGACTTATATTTAGGTC 59.549 45.833 0.00 0.00 32.55 3.85
2228 2350 9.775854 TGTAGTACTAGATCATGACTACCTTAC 57.224 37.037 17.48 5.55 41.07 2.34
2260 2382 8.770010 ATCTAGTAGTAAAGCCAACTATCACT 57.230 34.615 0.00 0.00 32.34 3.41
2266 2388 8.826293 ACTCTTATCTAGTAGTAAAGCCAACT 57.174 34.615 0.00 0.00 0.00 3.16
2317 2468 6.154706 ACAACCACCACTAAAACATTTGGTAA 59.845 34.615 0.00 0.00 40.51 2.85
2320 2471 5.017294 ACAACCACCACTAAAACATTTGG 57.983 39.130 0.00 0.00 35.06 3.28
2323 2474 6.238538 CGACTTACAACCACCACTAAAACATT 60.239 38.462 0.00 0.00 0.00 2.71
2338 2489 9.601971 TTATTGCTTTTACAATCGACTTACAAC 57.398 29.630 0.00 0.00 40.64 3.32
2339 2490 9.820229 CTTATTGCTTTTACAATCGACTTACAA 57.180 29.630 0.00 0.00 40.64 2.41
2349 2504 7.977853 CCTGATTGCTCTTATTGCTTTTACAAT 59.022 33.333 0.00 0.00 42.73 2.71
2387 2542 4.705507 CCACAGAGGTAGCTCAAGTACTAA 59.294 45.833 23.18 0.00 0.00 2.24
2401 2556 0.107508 CAATCGCCATCCACAGAGGT 60.108 55.000 0.00 0.00 39.02 3.85
2406 2561 2.045708 GCCACAATCGCCATCCACA 61.046 57.895 0.00 0.00 0.00 4.17
2471 2626 1.516386 AGATACAACACGCGGCGAG 60.516 57.895 30.94 24.15 0.00 5.03
2483 2638 0.036483 TTGCGCTTGAGCCAGATACA 60.036 50.000 9.73 0.00 37.91 2.29
2495 2650 2.084546 GAAGACCCTGTTATTGCGCTT 58.915 47.619 9.73 0.00 0.00 4.68
2512 2667 2.422127 ACACCAACCTTGTTTGTCGAAG 59.578 45.455 0.00 0.00 0.00 3.79
2513 2668 2.420722 GACACCAACCTTGTTTGTCGAA 59.579 45.455 0.00 0.00 32.86 3.71
2514 2669 2.011222 GACACCAACCTTGTTTGTCGA 58.989 47.619 0.00 0.00 32.86 4.20
2515 2670 1.740585 TGACACCAACCTTGTTTGTCG 59.259 47.619 10.32 0.00 39.93 4.35
2516 2671 3.705604 CATGACACCAACCTTGTTTGTC 58.294 45.455 8.90 8.90 38.65 3.18
2517 2672 2.159114 GCATGACACCAACCTTGTTTGT 60.159 45.455 0.00 0.00 0.00 2.83
2518 2673 2.472816 GCATGACACCAACCTTGTTTG 58.527 47.619 0.00 0.00 0.00 2.93
2519 2674 1.412343 GGCATGACACCAACCTTGTTT 59.588 47.619 0.00 0.00 0.00 2.83
2520 2675 1.039856 GGCATGACACCAACCTTGTT 58.960 50.000 0.00 0.00 0.00 2.83
2521 2676 1.172180 CGGCATGACACCAACCTTGT 61.172 55.000 0.00 0.00 0.00 3.16
2522 2677 1.580942 CGGCATGACACCAACCTTG 59.419 57.895 0.00 0.00 0.00 3.61
2523 2678 2.268076 GCGGCATGACACCAACCTT 61.268 57.895 0.00 0.00 0.00 3.50
2524 2679 2.672996 GCGGCATGACACCAACCT 60.673 61.111 0.00 0.00 0.00 3.50
2525 2680 3.747976 GGCGGCATGACACCAACC 61.748 66.667 3.07 0.00 0.00 3.77
2526 2681 2.081425 TTTGGCGGCATGACACCAAC 62.081 55.000 20.82 0.00 41.72 3.77
2527 2682 1.395045 TTTTGGCGGCATGACACCAA 61.395 50.000 17.31 17.31 40.34 3.67
2530 2685 0.387239 GACTTTTGGCGGCATGACAC 60.387 55.000 14.32 1.13 32.88 3.67
2532 2687 4.868195 GACTTTTGGCGGCATGAC 57.132 55.556 14.32 3.21 0.00 3.06
2563 2718 0.594796 CCACAAAGCAAAGTCGGCAC 60.595 55.000 0.00 0.00 0.00 5.01
2564 2719 0.749818 TCCACAAAGCAAAGTCGGCA 60.750 50.000 0.00 0.00 0.00 5.69
2565 2720 0.383949 TTCCACAAAGCAAAGTCGGC 59.616 50.000 0.00 0.00 0.00 5.54
2566 2721 2.099098 AGTTTCCACAAAGCAAAGTCGG 59.901 45.455 0.00 0.00 0.00 4.79
2567 2722 3.420839 AGTTTCCACAAAGCAAAGTCG 57.579 42.857 0.00 0.00 0.00 4.18
2568 2723 4.036852 AGCTAGTTTCCACAAAGCAAAGTC 59.963 41.667 0.00 0.00 36.89 3.01
2569 2724 3.954258 AGCTAGTTTCCACAAAGCAAAGT 59.046 39.130 0.00 0.00 36.89 2.66
2576 2731 3.067684 GCCCTAGCTAGTTTCCACAAA 57.932 47.619 19.31 0.00 35.50 2.83
2601 2756 3.003173 TCCTTCAGGCCCACCTCG 61.003 66.667 0.00 0.00 46.34 4.63
2608 2763 0.684535 GAGCTATCCTCCTTCAGGCC 59.315 60.000 0.00 0.00 43.08 5.19
2612 2767 3.445008 ACACAAGAGCTATCCTCCTTCA 58.555 45.455 0.00 0.00 41.74 3.02
2624 2779 4.336713 ACAAGAGAAAAGGAACACAAGAGC 59.663 41.667 0.00 0.00 0.00 4.09
2636 2791 1.538950 GCCTGCTCCACAAGAGAAAAG 59.461 52.381 0.00 0.00 46.50 2.27
2661 2816 0.405585 AAGGCAAGCATACCACAGGT 59.594 50.000 0.00 0.00 40.16 4.00
2663 2818 1.538047 ACAAGGCAAGCATACCACAG 58.462 50.000 0.00 0.00 0.00 3.66
2670 2825 2.297033 CACAAGGTTACAAGGCAAGCAT 59.703 45.455 0.00 0.00 0.00 3.79
2677 2832 4.021016 AGAGAGTAGCACAAGGTTACAAGG 60.021 45.833 0.00 0.00 35.81 3.61
2686 2841 6.463995 AAGATAGGAAGAGAGTAGCACAAG 57.536 41.667 0.00 0.00 0.00 3.16
2726 2881 5.108517 GTGGCAAAAATGAGTCAAAACTGA 58.891 37.500 0.00 0.00 35.28 3.41
2731 2886 4.582701 ATCGTGGCAAAAATGAGTCAAA 57.417 36.364 0.00 0.00 0.00 2.69
2733 2888 4.323417 AGTATCGTGGCAAAAATGAGTCA 58.677 39.130 0.00 0.00 0.00 3.41
2735 2890 4.323417 TGAGTATCGTGGCAAAAATGAGT 58.677 39.130 0.00 0.00 38.61 3.41
2737 2892 5.895636 ATTGAGTATCGTGGCAAAAATGA 57.104 34.783 0.00 0.00 38.61 2.57
2738 2893 6.949578 AAATTGAGTATCGTGGCAAAAATG 57.050 33.333 0.00 0.00 38.61 2.32
2740 2895 5.176590 GCAAAATTGAGTATCGTGGCAAAAA 59.823 36.000 0.00 0.00 38.61 1.94
2743 2898 3.366883 GGCAAAATTGAGTATCGTGGCAA 60.367 43.478 0.00 0.00 38.61 4.52
2758 2913 4.696455 CTGAAACTCTTTGGTGGCAAAAT 58.304 39.130 0.00 0.00 0.00 1.82
2760 2915 2.159114 GCTGAAACTCTTTGGTGGCAAA 60.159 45.455 0.00 0.00 0.00 3.68
2768 2923 5.679734 TTTAGAGCAGCTGAAACTCTTTG 57.320 39.130 22.33 0.00 41.03 2.77
2769 2924 6.675987 CATTTTAGAGCAGCTGAAACTCTTT 58.324 36.000 22.33 7.02 41.03 2.52
2772 2927 4.410448 GCATTTTAGAGCAGCTGAAACTC 58.590 43.478 20.43 14.67 35.27 3.01
2774 2929 3.057315 TGGCATTTTAGAGCAGCTGAAAC 60.057 43.478 20.43 7.52 35.27 2.78
2776 2931 2.794103 TGGCATTTTAGAGCAGCTGAA 58.206 42.857 20.43 1.05 0.00 3.02
2777 2932 2.495155 TGGCATTTTAGAGCAGCTGA 57.505 45.000 20.43 0.00 0.00 4.26
2778 2933 2.286831 CGATGGCATTTTAGAGCAGCTG 60.287 50.000 10.11 10.11 0.00 4.24
2779 2934 1.945394 CGATGGCATTTTAGAGCAGCT 59.055 47.619 0.00 0.00 0.00 4.24
2780 2935 1.672881 ACGATGGCATTTTAGAGCAGC 59.327 47.619 0.00 0.00 0.00 5.25
2783 2938 3.438360 CCAAACGATGGCATTTTAGAGC 58.562 45.455 0.00 0.00 43.80 4.09
2795 2950 4.786507 CATGCATGTATACCCAAACGATG 58.213 43.478 18.91 0.00 0.00 3.84
2796 2951 3.253188 GCATGCATGTATACCCAAACGAT 59.747 43.478 26.79 0.00 0.00 3.73
2797 2952 2.616376 GCATGCATGTATACCCAAACGA 59.384 45.455 26.79 0.00 0.00 3.85
2798 2953 2.618241 AGCATGCATGTATACCCAAACG 59.382 45.455 26.79 0.00 0.00 3.60
2799 2954 3.631686 TGAGCATGCATGTATACCCAAAC 59.368 43.478 26.79 7.00 0.00 2.93
2800 2955 3.895998 TGAGCATGCATGTATACCCAAA 58.104 40.909 26.79 1.63 0.00 3.28
2801 2956 3.574354 TGAGCATGCATGTATACCCAA 57.426 42.857 26.79 3.14 0.00 4.12
2802 2957 3.574354 TTGAGCATGCATGTATACCCA 57.426 42.857 26.79 13.01 0.00 4.51
2803 2958 4.916983 TTTTGAGCATGCATGTATACCC 57.083 40.909 26.79 9.88 0.00 3.69
2823 2978 5.124457 CAGTGATAGTGCTACATGGCTTTTT 59.876 40.000 0.00 0.00 0.00 1.94
2824 2979 4.637534 CAGTGATAGTGCTACATGGCTTTT 59.362 41.667 0.00 0.00 0.00 2.27
2825 2980 4.194640 CAGTGATAGTGCTACATGGCTTT 58.805 43.478 0.00 0.00 0.00 3.51
2826 2981 3.198635 ACAGTGATAGTGCTACATGGCTT 59.801 43.478 0.00 0.00 0.00 4.35
2827 2982 2.768527 ACAGTGATAGTGCTACATGGCT 59.231 45.455 0.00 0.00 0.00 4.75
2828 2983 3.185246 ACAGTGATAGTGCTACATGGC 57.815 47.619 0.00 0.00 0.00 4.40
2829 2984 5.163405 ACCTAACAGTGATAGTGCTACATGG 60.163 44.000 6.67 0.00 0.00 3.66
2830 2985 5.907207 ACCTAACAGTGATAGTGCTACATG 58.093 41.667 6.67 0.00 0.00 3.21
2831 2986 5.656859 TGACCTAACAGTGATAGTGCTACAT 59.343 40.000 6.67 0.00 0.00 2.29
2832 2987 5.014202 TGACCTAACAGTGATAGTGCTACA 58.986 41.667 6.67 0.00 0.00 2.74
2833 2988 5.105877 TGTGACCTAACAGTGATAGTGCTAC 60.106 44.000 6.67 2.00 0.00 3.58
2834 2989 5.014202 TGTGACCTAACAGTGATAGTGCTA 58.986 41.667 6.67 0.00 0.00 3.49
2835 2990 3.832490 TGTGACCTAACAGTGATAGTGCT 59.168 43.478 6.67 0.00 0.00 4.40
2836 2991 4.177026 CTGTGACCTAACAGTGATAGTGC 58.823 47.826 6.67 0.00 42.21 4.40
2846 3001 1.765904 TCAACAGGCTGTGACCTAACA 59.234 47.619 22.83 0.00 38.26 2.41
2847 3002 2.143925 GTCAACAGGCTGTGACCTAAC 58.856 52.381 22.83 9.39 38.26 2.34
2848 3003 1.071699 GGTCAACAGGCTGTGACCTAA 59.928 52.381 35.94 16.13 41.27 2.69
2849 3004 0.685097 GGTCAACAGGCTGTGACCTA 59.315 55.000 35.94 17.46 41.27 3.08
2850 3005 1.344953 TGGTCAACAGGCTGTGACCT 61.345 55.000 38.62 21.30 43.05 3.85
2851 3006 1.148273 TGGTCAACAGGCTGTGACC 59.852 57.895 36.26 36.26 42.99 4.02
2852 3007 0.463654 TGTGGTCAACAGGCTGTGAC 60.464 55.000 27.48 27.48 33.78 3.67
2853 3008 0.473755 ATGTGGTCAACAGGCTGTGA 59.526 50.000 22.83 17.16 43.64 3.58
2854 3009 1.321474 AATGTGGTCAACAGGCTGTG 58.679 50.000 22.83 15.10 43.64 3.66
2855 3010 2.949177 TAATGTGGTCAACAGGCTGT 57.051 45.000 15.88 15.88 43.64 4.40
2856 3011 4.883585 ACATATAATGTGGTCAACAGGCTG 59.116 41.667 14.16 14.16 43.64 4.85
2857 3012 5.116084 ACATATAATGTGGTCAACAGGCT 57.884 39.130 0.00 0.00 43.64 4.58
2858 3013 4.275936 GGACATATAATGTGGTCAACAGGC 59.724 45.833 0.00 0.00 45.03 4.85
2859 3014 5.436175 TGGACATATAATGTGGTCAACAGG 58.564 41.667 0.00 0.00 45.03 4.00
2860 3015 7.389803 TTTGGACATATAATGTGGTCAACAG 57.610 36.000 0.00 0.00 45.03 3.16
2861 3016 7.667635 TCTTTTGGACATATAATGTGGTCAACA 59.332 33.333 0.00 0.00 45.03 3.33
2862 3017 8.050778 TCTTTTGGACATATAATGTGGTCAAC 57.949 34.615 0.00 0.00 45.03 3.18
2863 3018 7.148086 GCTCTTTTGGACATATAATGTGGTCAA 60.148 37.037 0.00 0.00 45.03 3.18
2864 3019 6.318648 GCTCTTTTGGACATATAATGTGGTCA 59.681 38.462 0.00 0.00 45.03 4.02
2879 3034 5.820947 AGTTTTAGTTCTTCGCTCTTTTGGA 59.179 36.000 0.00 0.00 0.00 3.53
2888 3043 5.652744 TCTGACAAGTTTTAGTTCTTCGC 57.347 39.130 0.00 0.00 0.00 4.70
2890 3045 7.800847 GCAGATTCTGACAAGTTTTAGTTCTTC 59.199 37.037 17.87 0.00 32.44 2.87
2891 3046 7.500559 AGCAGATTCTGACAAGTTTTAGTTCTT 59.499 33.333 17.87 0.00 32.44 2.52
2892 3047 6.995091 AGCAGATTCTGACAAGTTTTAGTTCT 59.005 34.615 17.87 0.00 32.44 3.01
2893 3048 7.195839 AGCAGATTCTGACAAGTTTTAGTTC 57.804 36.000 17.87 0.00 32.44 3.01
2894 3049 8.854614 ATAGCAGATTCTGACAAGTTTTAGTT 57.145 30.769 17.87 0.00 32.44 2.24
2897 3052 8.535335 AGAGATAGCAGATTCTGACAAGTTTTA 58.465 33.333 17.87 0.00 32.44 1.52
2898 3053 7.393216 AGAGATAGCAGATTCTGACAAGTTTT 58.607 34.615 17.87 0.00 32.44 2.43
2899 3054 6.945218 AGAGATAGCAGATTCTGACAAGTTT 58.055 36.000 17.87 0.00 32.44 2.66
2900 3055 6.380846 AGAGAGATAGCAGATTCTGACAAGTT 59.619 38.462 17.87 0.00 32.44 2.66
2903 3058 6.128486 AGAGAGAGATAGCAGATTCTGACAA 58.872 40.000 17.87 1.96 32.44 3.18
2914 3069 4.206375 CAAGTGGAGAGAGAGAGATAGCA 58.794 47.826 0.00 0.00 0.00 3.49
2918 3073 5.200483 CCTAACAAGTGGAGAGAGAGAGAT 58.800 45.833 0.00 0.00 0.00 2.75
2925 3080 4.127918 TCTTCCCTAACAAGTGGAGAGA 57.872 45.455 0.00 0.00 0.00 3.10
2926 3081 4.764172 CATCTTCCCTAACAAGTGGAGAG 58.236 47.826 0.00 0.00 0.00 3.20
2928 3083 3.274288 GCATCTTCCCTAACAAGTGGAG 58.726 50.000 0.00 0.00 0.00 3.86
2931 3086 4.761739 TCTTTGCATCTTCCCTAACAAGTG 59.238 41.667 0.00 0.00 0.00 3.16
2932 3087 4.985538 TCTTTGCATCTTCCCTAACAAGT 58.014 39.130 0.00 0.00 0.00 3.16
2933 3088 4.142513 GCTCTTTGCATCTTCCCTAACAAG 60.143 45.833 0.00 0.00 42.31 3.16
2934 3089 3.758554 GCTCTTTGCATCTTCCCTAACAA 59.241 43.478 0.00 0.00 42.31 2.83
2937 3092 2.236146 TCGCTCTTTGCATCTTCCCTAA 59.764 45.455 0.00 0.00 43.06 2.69
2938 3093 1.831106 TCGCTCTTTGCATCTTCCCTA 59.169 47.619 0.00 0.00 43.06 3.53
2939 3094 0.615331 TCGCTCTTTGCATCTTCCCT 59.385 50.000 0.00 0.00 43.06 4.20
2940 3095 1.399791 CTTCGCTCTTTGCATCTTCCC 59.600 52.381 0.00 0.00 43.06 3.97
2942 3097 3.434984 AGTTCTTCGCTCTTTGCATCTTC 59.565 43.478 0.00 0.00 43.06 2.87
2955 3128 3.795659 CCGACAAGTTTTAGTTCTTCGC 58.204 45.455 0.00 0.00 0.00 4.70
2956 3129 3.246699 TGCCGACAAGTTTTAGTTCTTCG 59.753 43.478 0.00 0.00 0.00 3.79
2973 3146 1.527380 GTTCAAACCACCCTGCCGA 60.527 57.895 0.00 0.00 0.00 5.54
3009 3182 8.678199 CACAGGATATCTCTAAACGCTATATCA 58.322 37.037 2.05 0.00 33.23 2.15
3011 3184 7.340743 AGCACAGGATATCTCTAAACGCTATAT 59.659 37.037 2.05 0.00 0.00 0.86
3016 3189 3.983741 AGCACAGGATATCTCTAAACGC 58.016 45.455 2.05 0.00 0.00 4.84
3018 3191 9.036671 GTTTCTTAGCACAGGATATCTCTAAAC 57.963 37.037 2.05 0.99 0.00 2.01
3027 3200 5.876357 ACCAAAGTTTCTTAGCACAGGATA 58.124 37.500 0.00 0.00 0.00 2.59
3032 3205 4.164843 AGGACCAAAGTTTCTTAGCACA 57.835 40.909 0.00 0.00 0.00 4.57
3034 3207 5.529800 GTGTTAGGACCAAAGTTTCTTAGCA 59.470 40.000 0.00 0.00 0.00 3.49
3036 3209 7.444183 TCATGTGTTAGGACCAAAGTTTCTTAG 59.556 37.037 0.00 0.00 0.00 2.18
3074 3624 2.943033 ACTGAGACAAAAAGACGGGTTG 59.057 45.455 0.00 0.00 0.00 3.77
3079 3629 4.551388 AGCTCTACTGAGACAAAAAGACG 58.449 43.478 0.00 0.00 42.73 4.18
3102 3652 3.316308 ACTGAAACATGCCACTGAAAGAC 59.684 43.478 0.00 0.00 37.43 3.01
3103 3653 3.554934 ACTGAAACATGCCACTGAAAGA 58.445 40.909 0.00 0.00 37.43 2.52
3107 3657 1.421268 AGGACTGAAACATGCCACTGA 59.579 47.619 0.00 0.00 0.00 3.41
3108 3658 1.808945 GAGGACTGAAACATGCCACTG 59.191 52.381 0.00 0.00 0.00 3.66
3110 3660 2.191128 AGAGGACTGAAACATGCCAC 57.809 50.000 0.00 0.00 0.00 5.01
3111 3661 2.553028 GGAAGAGGACTGAAACATGCCA 60.553 50.000 0.00 0.00 0.00 4.92
3114 3664 4.277515 TGAGGAAGAGGACTGAAACATG 57.722 45.455 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.