Multiple sequence alignment - TraesCS2A01G057800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G057800 chr2A 100.000 8035 0 0 1 8035 24286012 24277978 0.000000e+00 14838.0
1 TraesCS2A01G057800 chr2A 96.438 365 11 1 7419 7783 24184480 24184118 1.150000e-167 601.0
2 TraesCS2A01G057800 chr2A 91.416 233 10 2 1 232 18031151 18031374 2.180000e-80 311.0
3 TraesCS2A01G057800 chr2A 94.262 122 7 0 73 194 202097456 202097335 3.830000e-43 187.0
4 TraesCS2A01G057800 chr2A 93.333 75 5 0 1 75 202097578 202097504 2.370000e-20 111.0
5 TraesCS2A01G057800 chr2A 98.077 52 1 0 7373 7424 24196179 24196128 3.090000e-14 91.6
6 TraesCS2A01G057800 chr2A 94.444 54 2 1 186 239 706223537 706223589 1.860000e-11 82.4
7 TraesCS2A01G057800 chr2A 92.593 54 3 1 186 239 650617368 650617420 8.650000e-10 76.8
8 TraesCS2A01G057800 chr2A 100.000 38 0 0 7908 7945 24183465 24183428 4.020000e-08 71.3
9 TraesCS2A01G057800 chr2B 96.400 2222 52 12 3221 5422 39306211 39308424 0.000000e+00 3635.0
10 TraesCS2A01G057800 chr2B 94.618 1412 54 8 5419 6825 39308485 39309879 0.000000e+00 2167.0
11 TraesCS2A01G057800 chr2B 93.319 1422 67 12 1797 3197 39304651 39306065 0.000000e+00 2074.0
12 TraesCS2A01G057800 chr2B 91.079 1177 50 17 635 1796 39303434 39304570 0.000000e+00 1541.0
13 TraesCS2A01G057800 chr2B 90.919 947 60 13 6857 7783 39309946 39310886 0.000000e+00 1249.0
14 TraesCS2A01G057800 chr2B 88.973 263 22 5 232 491 39303021 39303279 1.300000e-82 318.0
15 TraesCS2A01G057800 chr2B 94.444 162 8 1 73 233 434622598 434622437 1.730000e-61 248.0
16 TraesCS2A01G057800 chr2B 81.212 165 23 5 4669 4826 46845059 46844896 8.470000e-25 126.0
17 TraesCS2A01G057800 chr2B 94.667 75 4 0 1 75 434622720 434622646 5.090000e-22 117.0
18 TraesCS2A01G057800 chr2B 93.846 65 4 0 7840 7904 39310883 39310947 1.850000e-16 99.0
19 TraesCS2A01G057800 chr2B 88.000 50 5 1 4821 4870 46721922 46721874 3.130000e-04 58.4
20 TraesCS2A01G057800 chr2D 92.634 2050 90 23 5505 7544 22449505 22447507 0.000000e+00 2892.0
21 TraesCS2A01G057800 chr2D 92.672 1392 66 19 1248 2629 22452318 22450953 0.000000e+00 1973.0
22 TraesCS2A01G057800 chr2D 94.353 549 14 9 659 1196 22453251 22452709 0.000000e+00 826.0
23 TraesCS2A01G057800 chr2D 90.236 297 17 8 5133 5423 22449993 22449703 2.120000e-100 377.0
24 TraesCS2A01G057800 chr2D 83.028 218 26 7 4879 5088 29100797 29100583 3.830000e-43 187.0
25 TraesCS2A01G057800 chr2D 89.855 138 10 4 3061 3197 22450354 22450220 2.980000e-39 174.0
26 TraesCS2A01G057800 chr2D 82.716 162 23 5 4669 4826 29102391 29102231 1.090000e-28 139.0
27 TraesCS2A01G057800 chr2D 94.444 36 2 0 7603 7638 22444584 22444549 1.000000e-03 56.5
28 TraesCS2A01G057800 chr4A 95.436 241 9 2 1 239 277992590 277992830 4.550000e-102 383.0
29 TraesCS2A01G057800 chr4D 96.639 119 4 0 73 191 325370380 325370498 1.770000e-46 198.0
30 TraesCS2A01G057800 chr4B 93.496 123 7 1 73 194 499061225 499061103 1.780000e-41 182.0
31 TraesCS2A01G057800 chr4B 75.120 418 83 15 4199 4603 554197195 554197604 8.290000e-40 176.0
32 TraesCS2A01G057800 chr3B 93.496 123 7 1 73 194 55723475 55723353 1.780000e-41 182.0
33 TraesCS2A01G057800 chr3B 94.167 120 6 1 73 191 770735503 770735622 1.780000e-41 182.0
34 TraesCS2A01G057800 chr1A 94.167 120 6 1 73 191 23289031 23289150 1.780000e-41 182.0
35 TraesCS2A01G057800 chr5A 96.491 57 1 1 3792 3848 37640099 37640044 8.590000e-15 93.5
36 TraesCS2A01G057800 chr5D 92.982 57 4 0 3792 3848 46612668 46612724 5.170000e-12 84.2
37 TraesCS2A01G057800 chr5D 81.818 77 13 1 479 555 14396800 14396875 6.730000e-06 63.9
38 TraesCS2A01G057800 chr7B 95.918 49 1 1 186 234 749134230 749134277 2.400000e-10 78.7
39 TraesCS2A01G057800 chr7B 95.833 48 1 1 186 233 33628859 33628813 8.650000e-10 76.8
40 TraesCS2A01G057800 chr7B 86.154 65 8 1 596 660 154773300 154773237 1.450000e-07 69.4
41 TraesCS2A01G057800 chr6D 94.118 51 1 2 182 232 143371578 143371530 8.650000e-10 76.8
42 TraesCS2A01G057800 chr1D 92.308 52 2 2 182 233 457576094 457576045 1.120000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G057800 chr2A 24277978 24286012 8034 True 14838.000000 14838 100.000000 1 8035 1 chr2A.!!$R2 8034
1 TraesCS2A01G057800 chr2A 24183428 24184480 1052 True 336.150000 601 98.219000 7419 7945 2 chr2A.!!$R3 526
2 TraesCS2A01G057800 chr2B 39303021 39310947 7926 False 1583.285714 3635 92.736286 232 7904 7 chr2B.!!$F1 7672
3 TraesCS2A01G057800 chr2D 22444549 22453251 8702 True 1049.750000 2892 92.365667 659 7638 6 chr2D.!!$R1 6979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 643 0.108992 GTCGTGAGTATGCCCGTTCA 60.109 55.000 0.00 0.00 0.00 3.18 F
1482 1902 0.174162 GGATTGTTGATGCAGGCACC 59.826 55.000 0.00 0.00 0.00 5.01 F
1483 1903 0.179156 GATTGTTGATGCAGGCACCG 60.179 55.000 0.00 0.00 0.00 4.94 F
3325 4153 0.725686 CTGAAATCTGCGCTGTCCAG 59.274 55.000 9.73 10.57 0.00 3.86 F
3668 4496 1.072806 ACCATCATGCAGTCACACACT 59.927 47.619 0.00 0.00 34.67 3.55 F
4876 5723 0.109132 GCTTTGCCAAGGTCCAATCG 60.109 55.000 0.00 0.00 0.00 3.34 F
5094 5941 0.755327 AAACGCCCCTCCCATTATGC 60.755 55.000 0.00 0.00 0.00 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 2116 0.035152 TGTCCCACAAGGCAGCATAG 60.035 55.000 0.00 0.00 34.51 2.23 R
3463 4291 1.070786 GACGGAACAAGAGGCCACA 59.929 57.895 5.01 0.00 0.00 4.17 R
3606 4434 7.064847 TGACTTAATTACAGTGACAAACAACGT 59.935 33.333 0.00 0.00 0.00 3.99 R
4758 5605 0.319813 AGCAATTTGCCGACCAAAGC 60.320 50.000 17.51 6.17 46.52 3.51 R
5749 6723 0.595095 GGTTGCAAGTGCTGAAGGAG 59.405 55.000 0.00 0.00 42.66 3.69 R
6825 7806 1.266989 GTTTACCAAGTCTGCTGGTGC 59.733 52.381 6.49 0.00 37.16 5.01 R
7122 8150 0.541392 TGCCATACCATCGACAGCTT 59.459 50.000 0.00 0.00 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.754382 ACCTGATTATTTGATGCATAATTTCAC 57.246 29.630 0.00 0.00 28.71 3.18
33 34 9.752961 CCTGATTATTTGATGCATAATTTCACA 57.247 29.630 0.00 0.00 28.71 3.58
37 38 8.890124 TTATTTGATGCATAATTTCACATGGG 57.110 30.769 0.00 0.00 0.00 4.00
38 39 5.936187 TTGATGCATAATTTCACATGGGT 57.064 34.783 0.00 0.00 0.00 4.51
39 40 7.415592 TTTGATGCATAATTTCACATGGGTA 57.584 32.000 0.00 0.00 0.00 3.69
40 41 7.415592 TTGATGCATAATTTCACATGGGTAA 57.584 32.000 0.00 0.00 0.00 2.85
41 42 7.415592 TGATGCATAATTTCACATGGGTAAA 57.584 32.000 0.00 0.00 0.00 2.01
42 43 7.264221 TGATGCATAATTTCACATGGGTAAAC 58.736 34.615 0.00 0.00 0.00 2.01
43 44 6.849085 TGCATAATTTCACATGGGTAAACT 57.151 33.333 0.00 0.00 0.00 2.66
44 45 7.946381 TGCATAATTTCACATGGGTAAACTA 57.054 32.000 0.00 0.00 0.00 2.24
45 46 8.354711 TGCATAATTTCACATGGGTAAACTAA 57.645 30.769 0.00 0.00 0.00 2.24
46 47 8.807118 TGCATAATTTCACATGGGTAAACTAAA 58.193 29.630 0.00 0.00 0.00 1.85
47 48 9.816354 GCATAATTTCACATGGGTAAACTAAAT 57.184 29.630 0.00 0.00 0.00 1.40
72 73 5.835113 TTTTAGCCTGGTTTAGATGATGC 57.165 39.130 0.00 0.00 0.00 3.91
73 74 4.502105 TTAGCCTGGTTTAGATGATGCA 57.498 40.909 0.00 0.00 0.00 3.96
74 75 3.370840 AGCCTGGTTTAGATGATGCAA 57.629 42.857 0.00 0.00 0.00 4.08
75 76 3.019564 AGCCTGGTTTAGATGATGCAAC 58.980 45.455 0.00 0.00 0.00 4.17
76 77 2.099756 GCCTGGTTTAGATGATGCAACC 59.900 50.000 0.00 0.00 39.41 3.77
77 78 2.689983 CCTGGTTTAGATGATGCAACCC 59.310 50.000 0.00 0.00 38.36 4.11
78 79 3.355378 CTGGTTTAGATGATGCAACCCA 58.645 45.455 0.00 0.00 38.36 4.51
79 80 3.763360 CTGGTTTAGATGATGCAACCCAA 59.237 43.478 0.00 0.00 38.36 4.12
80 81 4.155709 TGGTTTAGATGATGCAACCCAAA 58.844 39.130 0.00 0.00 38.36 3.28
81 82 4.776837 TGGTTTAGATGATGCAACCCAAAT 59.223 37.500 0.00 0.00 38.36 2.32
82 83 5.248020 TGGTTTAGATGATGCAACCCAAATT 59.752 36.000 0.00 0.00 38.36 1.82
83 84 6.172630 GGTTTAGATGATGCAACCCAAATTT 58.827 36.000 0.00 0.00 33.77 1.82
84 85 6.654582 GGTTTAGATGATGCAACCCAAATTTT 59.345 34.615 0.00 0.00 33.77 1.82
85 86 7.361116 GGTTTAGATGATGCAACCCAAATTTTG 60.361 37.037 1.99 1.99 33.77 2.44
96 97 2.765122 CCAAATTTTGGCATTGGTCGT 58.235 42.857 14.96 0.00 45.17 4.34
97 98 3.919216 CCAAATTTTGGCATTGGTCGTA 58.081 40.909 14.96 0.00 45.17 3.43
98 99 4.310769 CCAAATTTTGGCATTGGTCGTAA 58.689 39.130 14.96 0.00 45.17 3.18
99 100 4.934602 CCAAATTTTGGCATTGGTCGTAAT 59.065 37.500 14.96 0.00 45.17 1.89
100 101 5.411053 CCAAATTTTGGCATTGGTCGTAATT 59.589 36.000 14.96 0.00 45.17 1.40
101 102 6.072783 CCAAATTTTGGCATTGGTCGTAATTT 60.073 34.615 14.96 0.00 45.17 1.82
102 103 6.479095 AATTTTGGCATTGGTCGTAATTTG 57.521 33.333 0.00 0.00 0.00 2.32
103 104 3.584406 TTGGCATTGGTCGTAATTTGG 57.416 42.857 0.00 0.00 0.00 3.28
104 105 2.520069 TGGCATTGGTCGTAATTTGGT 58.480 42.857 0.00 0.00 0.00 3.67
105 106 3.687125 TGGCATTGGTCGTAATTTGGTA 58.313 40.909 0.00 0.00 0.00 3.25
106 107 3.692101 TGGCATTGGTCGTAATTTGGTAG 59.308 43.478 0.00 0.00 0.00 3.18
107 108 3.692593 GGCATTGGTCGTAATTTGGTAGT 59.307 43.478 0.00 0.00 0.00 2.73
108 109 4.157105 GGCATTGGTCGTAATTTGGTAGTT 59.843 41.667 0.00 0.00 0.00 2.24
109 110 5.329493 GCATTGGTCGTAATTTGGTAGTTC 58.671 41.667 0.00 0.00 0.00 3.01
110 111 5.123344 GCATTGGTCGTAATTTGGTAGTTCT 59.877 40.000 0.00 0.00 0.00 3.01
111 112 6.349033 GCATTGGTCGTAATTTGGTAGTTCTT 60.349 38.462 0.00 0.00 0.00 2.52
112 113 6.790285 TTGGTCGTAATTTGGTAGTTCTTC 57.210 37.500 0.00 0.00 0.00 2.87
113 114 5.856156 TGGTCGTAATTTGGTAGTTCTTCA 58.144 37.500 0.00 0.00 0.00 3.02
114 115 5.929992 TGGTCGTAATTTGGTAGTTCTTCAG 59.070 40.000 0.00 0.00 0.00 3.02
115 116 5.163884 GGTCGTAATTTGGTAGTTCTTCAGC 60.164 44.000 0.00 0.00 0.00 4.26
116 117 5.638234 GTCGTAATTTGGTAGTTCTTCAGCT 59.362 40.000 0.00 0.00 0.00 4.24
117 118 5.637810 TCGTAATTTGGTAGTTCTTCAGCTG 59.362 40.000 7.63 7.63 0.00 4.24
118 119 5.637810 CGTAATTTGGTAGTTCTTCAGCTGA 59.362 40.000 13.74 13.74 0.00 4.26
119 120 6.183360 CGTAATTTGGTAGTTCTTCAGCTGAG 60.183 42.308 17.43 11.30 0.00 3.35
120 121 4.689612 TTTGGTAGTTCTTCAGCTGAGT 57.310 40.909 17.43 0.80 0.00 3.41
121 122 3.667497 TGGTAGTTCTTCAGCTGAGTG 57.333 47.619 17.43 13.82 0.00 3.51
122 123 3.230976 TGGTAGTTCTTCAGCTGAGTGA 58.769 45.455 17.43 15.90 0.00 3.41
123 124 3.005897 TGGTAGTTCTTCAGCTGAGTGAC 59.994 47.826 17.43 15.43 0.00 3.67
124 125 3.005897 GGTAGTTCTTCAGCTGAGTGACA 59.994 47.826 17.43 0.05 0.00 3.58
125 126 3.104843 AGTTCTTCAGCTGAGTGACAC 57.895 47.619 17.43 16.82 0.00 3.67
126 127 2.432146 AGTTCTTCAGCTGAGTGACACA 59.568 45.455 17.43 0.00 0.00 3.72
127 128 3.070734 AGTTCTTCAGCTGAGTGACACAT 59.929 43.478 17.43 3.21 0.00 3.21
128 129 3.758755 TCTTCAGCTGAGTGACACATT 57.241 42.857 17.43 0.00 0.00 2.71
129 130 3.657634 TCTTCAGCTGAGTGACACATTC 58.342 45.455 17.43 0.00 0.00 2.67
130 131 3.070015 TCTTCAGCTGAGTGACACATTCA 59.930 43.478 17.43 2.87 0.00 2.57
131 132 3.690475 TCAGCTGAGTGACACATTCAT 57.310 42.857 13.74 0.00 36.32 2.57
132 133 4.011966 TCAGCTGAGTGACACATTCATT 57.988 40.909 13.74 0.00 36.32 2.57
133 134 4.392047 TCAGCTGAGTGACACATTCATTT 58.608 39.130 13.74 0.00 36.32 2.32
134 135 4.214758 TCAGCTGAGTGACACATTCATTTG 59.785 41.667 13.74 5.61 36.32 2.32
135 136 3.504906 AGCTGAGTGACACATTCATTTGG 59.495 43.478 8.59 0.00 36.32 3.28
136 137 3.503363 GCTGAGTGACACATTCATTTGGA 59.497 43.478 8.59 0.00 36.32 3.53
137 138 4.379186 GCTGAGTGACACATTCATTTGGAG 60.379 45.833 8.59 0.00 36.32 3.86
138 139 4.971939 TGAGTGACACATTCATTTGGAGA 58.028 39.130 8.59 0.00 36.32 3.71
139 140 5.375773 TGAGTGACACATTCATTTGGAGAA 58.624 37.500 8.59 0.00 36.32 2.87
140 141 5.471116 TGAGTGACACATTCATTTGGAGAAG 59.529 40.000 8.59 0.00 36.32 2.85
141 142 4.217118 AGTGACACATTCATTTGGAGAAGC 59.783 41.667 8.59 0.00 36.32 3.86
142 143 4.022935 GTGACACATTCATTTGGAGAAGCA 60.023 41.667 0.00 0.00 36.32 3.91
143 144 4.022935 TGACACATTCATTTGGAGAAGCAC 60.023 41.667 0.00 0.00 0.00 4.40
144 145 4.147321 ACACATTCATTTGGAGAAGCACT 58.853 39.130 0.00 0.00 0.00 4.40
145 146 5.316167 ACACATTCATTTGGAGAAGCACTA 58.684 37.500 0.00 0.00 0.00 2.74
146 147 5.413833 ACACATTCATTTGGAGAAGCACTAG 59.586 40.000 0.00 0.00 0.00 2.57
147 148 4.397417 ACATTCATTTGGAGAAGCACTAGC 59.603 41.667 0.00 0.00 42.56 3.42
160 161 2.820330 GCACTAGCTGGAATCAGAGAC 58.180 52.381 3.17 0.00 43.49 3.36
161 162 2.482839 GCACTAGCTGGAATCAGAGACC 60.483 54.545 3.17 0.00 43.49 3.85
162 163 3.030291 CACTAGCTGGAATCAGAGACCT 58.970 50.000 3.17 0.00 43.49 3.85
163 164 4.211125 CACTAGCTGGAATCAGAGACCTA 58.789 47.826 3.17 0.00 43.49 3.08
164 165 4.832266 CACTAGCTGGAATCAGAGACCTAT 59.168 45.833 3.17 0.00 43.49 2.57
165 166 5.304101 CACTAGCTGGAATCAGAGACCTATT 59.696 44.000 3.17 0.00 43.49 1.73
166 167 5.902431 ACTAGCTGGAATCAGAGACCTATTT 59.098 40.000 3.17 0.00 43.49 1.40
167 168 5.707066 AGCTGGAATCAGAGACCTATTTT 57.293 39.130 0.00 0.00 43.49 1.82
168 169 6.072199 AGCTGGAATCAGAGACCTATTTTT 57.928 37.500 0.00 0.00 43.49 1.94
201 202 9.914834 TTCCTGCTTATTATAAGTTAATGTGGT 57.085 29.630 12.82 0.00 0.00 4.16
202 203 9.555727 TCCTGCTTATTATAAGTTAATGTGGTC 57.444 33.333 12.82 0.00 0.00 4.02
203 204 8.784043 CCTGCTTATTATAAGTTAATGTGGTCC 58.216 37.037 12.82 0.00 0.00 4.46
204 205 8.685838 TGCTTATTATAAGTTAATGTGGTCCC 57.314 34.615 12.82 0.00 0.00 4.46
205 206 7.442969 TGCTTATTATAAGTTAATGTGGTCCCG 59.557 37.037 12.82 0.00 0.00 5.14
206 207 7.443272 GCTTATTATAAGTTAATGTGGTCCCGT 59.557 37.037 12.82 0.00 0.00 5.28
207 208 9.333724 CTTATTATAAGTTAATGTGGTCCCGTT 57.666 33.333 3.94 0.00 0.00 4.44
208 209 6.988622 TTATAAGTTAATGTGGTCCCGTTG 57.011 37.500 0.00 0.00 0.00 4.10
209 210 2.943036 AGTTAATGTGGTCCCGTTGT 57.057 45.000 0.00 0.00 0.00 3.32
210 211 4.354893 AAGTTAATGTGGTCCCGTTGTA 57.645 40.909 0.00 0.00 0.00 2.41
211 212 4.354893 AGTTAATGTGGTCCCGTTGTAA 57.645 40.909 0.00 0.00 0.00 2.41
212 213 4.067192 AGTTAATGTGGTCCCGTTGTAAC 58.933 43.478 0.00 0.00 0.00 2.50
230 231 3.782042 GCACGGGCGTTCTTCTAG 58.218 61.111 0.00 0.00 0.00 2.43
231 232 1.080025 GCACGGGCGTTCTTCTAGT 60.080 57.895 0.00 0.00 0.00 2.57
232 233 0.171903 GCACGGGCGTTCTTCTAGTA 59.828 55.000 0.00 0.00 0.00 1.82
233 234 1.905449 CACGGGCGTTCTTCTAGTAC 58.095 55.000 0.00 0.00 0.00 2.73
234 235 0.813821 ACGGGCGTTCTTCTAGTACC 59.186 55.000 0.00 0.00 0.00 3.34
235 236 0.813184 CGGGCGTTCTTCTAGTACCA 59.187 55.000 0.00 0.00 0.00 3.25
246 247 9.367444 CGTTCTTCTAGTACCAATAAATGAACT 57.633 33.333 0.00 0.00 0.00 3.01
267 268 4.630940 ACTCGTCTTTTACTCCTCTCTACG 59.369 45.833 0.00 0.00 0.00 3.51
272 273 2.345124 TTACTCCTCTCTACGCCCTC 57.655 55.000 0.00 0.00 0.00 4.30
277 278 0.671251 CCTCTCTACGCCCTCATGTC 59.329 60.000 0.00 0.00 0.00 3.06
279 280 1.101635 TCTCTACGCCCTCATGTCGG 61.102 60.000 0.00 0.00 0.00 4.79
302 303 3.741830 TTTGCACCTCGTCCACGCA 62.742 57.895 0.00 0.00 39.60 5.24
314 315 1.126846 GTCCACGCAACAAGAAGATCG 59.873 52.381 0.00 0.00 0.00 3.69
337 338 1.816224 GTTCACCCGTTTATGCCACAT 59.184 47.619 0.00 0.00 0.00 3.21
339 340 0.455410 CACCCGTTTATGCCACATGG 59.545 55.000 0.00 0.00 38.53 3.66
384 385 6.015772 TCCCCTTTTTGCTAAAGTATGTTGTC 60.016 38.462 9.86 0.00 0.00 3.18
409 410 7.973388 TCTTGAACTTTGAAATAACACCACAAG 59.027 33.333 0.00 0.00 0.00 3.16
428 430 5.010516 CACAAGGTTTTATGTGGTTGGATGA 59.989 40.000 0.00 0.00 42.46 2.92
434 436 6.183360 GGTTTTATGTGGTTGGATGATTAGGG 60.183 42.308 0.00 0.00 0.00 3.53
447 449 5.104735 GGATGATTAGGGGGACAGTGATATC 60.105 48.000 0.00 0.00 0.00 1.63
449 451 2.715763 TAGGGGGACAGTGATATCCC 57.284 55.000 8.51 8.51 41.57 3.85
450 452 0.647738 AGGGGGACAGTGATATCCCA 59.352 55.000 16.90 0.00 44.01 4.37
452 454 1.850345 GGGGGACAGTGATATCCCAAA 59.150 52.381 16.90 0.00 44.01 3.28
491 535 1.750193 TCCCGATGCTCACATTTTCC 58.250 50.000 0.00 0.00 36.35 3.13
492 536 1.281867 TCCCGATGCTCACATTTTCCT 59.718 47.619 0.00 0.00 36.35 3.36
494 538 2.874701 CCCGATGCTCACATTTTCCTAG 59.125 50.000 0.00 0.00 36.35 3.02
524 568 1.089920 AGAATTCTGGTGATGTGCGC 58.910 50.000 7.30 0.00 0.00 6.09
527 571 1.086067 ATTCTGGTGATGTGCGCTCG 61.086 55.000 9.73 0.00 0.00 5.03
528 572 3.190849 CTGGTGATGTGCGCTCGG 61.191 66.667 9.73 0.00 0.00 4.63
532 576 4.758251 TGATGTGCGCTCGGTGGG 62.758 66.667 9.73 0.00 0.00 4.61
534 578 4.457496 ATGTGCGCTCGGTGGGAG 62.457 66.667 9.73 0.00 46.06 4.30
551 595 4.464262 GGAGGCATTCCCATCGAC 57.536 61.111 0.00 0.00 40.37 4.20
553 597 1.048601 GGAGGCATTCCCATCGACTA 58.951 55.000 0.00 0.00 40.37 2.59
554 598 1.001406 GGAGGCATTCCCATCGACTAG 59.999 57.143 0.00 0.00 40.37 2.57
555 599 1.964223 GAGGCATTCCCATCGACTAGA 59.036 52.381 0.00 0.00 35.39 2.43
556 600 2.564947 GAGGCATTCCCATCGACTAGAT 59.435 50.000 0.00 0.00 41.01 1.98
571 615 7.716768 TCGACTAGATGATATATCGGCTTAG 57.283 40.000 8.19 9.18 0.00 2.18
572 616 7.273712 TCGACTAGATGATATATCGGCTTAGT 58.726 38.462 8.19 11.76 0.00 2.24
573 617 7.438757 TCGACTAGATGATATATCGGCTTAGTC 59.561 40.741 21.72 21.72 0.00 2.59
574 618 7.439955 CGACTAGATGATATATCGGCTTAGTCT 59.560 40.741 24.85 15.58 0.00 3.24
575 619 8.671384 ACTAGATGATATATCGGCTTAGTCTC 57.329 38.462 8.19 0.00 0.00 3.36
581 625 7.347252 TGATATATCGGCTTAGTCTCATAGGT 58.653 38.462 8.19 0.00 0.00 3.08
582 626 7.499563 TGATATATCGGCTTAGTCTCATAGGTC 59.500 40.741 8.19 0.00 0.00 3.85
586 630 2.950309 GGCTTAGTCTCATAGGTCGTGA 59.050 50.000 0.00 0.00 0.00 4.35
593 637 2.885266 TCTCATAGGTCGTGAGTATGCC 59.115 50.000 3.39 0.00 42.82 4.40
599 643 0.108992 GTCGTGAGTATGCCCGTTCA 60.109 55.000 0.00 0.00 0.00 3.18
603 647 2.755650 GTGAGTATGCCCGTTCATAGG 58.244 52.381 0.00 0.00 30.30 2.57
614 658 2.171870 CCGTTCATAGGGTTGGGTGTAT 59.828 50.000 0.00 0.00 0.00 2.29
615 659 3.202906 CGTTCATAGGGTTGGGTGTATG 58.797 50.000 0.00 0.00 0.00 2.39
616 660 3.551846 GTTCATAGGGTTGGGTGTATGG 58.448 50.000 0.00 0.00 0.00 2.74
617 661 2.131854 TCATAGGGTTGGGTGTATGGG 58.868 52.381 0.00 0.00 0.00 4.00
618 662 0.850784 ATAGGGTTGGGTGTATGGGC 59.149 55.000 0.00 0.00 0.00 5.36
619 663 1.283381 TAGGGTTGGGTGTATGGGCC 61.283 60.000 0.00 0.00 0.00 5.80
620 664 2.622447 GGGTTGGGTGTATGGGCCT 61.622 63.158 4.53 0.00 0.00 5.19
621 665 1.283381 GGGTTGGGTGTATGGGCCTA 61.283 60.000 4.53 0.00 0.00 3.93
622 666 0.850784 GGTTGGGTGTATGGGCCTAT 59.149 55.000 6.88 6.88 0.00 2.57
623 667 2.059490 GGTTGGGTGTATGGGCCTATA 58.941 52.381 4.39 4.39 0.00 1.31
624 668 2.647802 GGTTGGGTGTATGGGCCTATAT 59.352 50.000 12.50 2.60 0.00 0.86
625 669 3.847780 GGTTGGGTGTATGGGCCTATATA 59.152 47.826 12.50 6.79 0.00 0.86
626 670 4.477213 GGTTGGGTGTATGGGCCTATATAT 59.523 45.833 12.50 0.00 0.00 0.86
627 671 5.437060 GTTGGGTGTATGGGCCTATATATG 58.563 45.833 12.50 0.00 0.00 1.78
628 672 4.966611 TGGGTGTATGGGCCTATATATGA 58.033 43.478 12.50 0.00 0.00 2.15
629 673 4.968719 TGGGTGTATGGGCCTATATATGAG 59.031 45.833 12.50 0.00 0.00 2.90
630 674 4.348168 GGGTGTATGGGCCTATATATGAGG 59.652 50.000 12.50 1.87 37.12 3.86
676 720 5.461032 AAAGAAGGTTTTGTGTTGTGTCA 57.539 34.783 0.00 0.00 0.00 3.58
677 721 5.461032 AAGAAGGTTTTGTGTTGTGTCAA 57.539 34.783 0.00 0.00 0.00 3.18
815 861 0.253327 ACCATCGCCTTTCTTCCTCC 59.747 55.000 0.00 0.00 0.00 4.30
816 862 0.543749 CCATCGCCTTTCTTCCTCCT 59.456 55.000 0.00 0.00 0.00 3.69
817 863 1.065126 CCATCGCCTTTCTTCCTCCTT 60.065 52.381 0.00 0.00 0.00 3.36
818 864 2.284190 CATCGCCTTTCTTCCTCCTTC 58.716 52.381 0.00 0.00 0.00 3.46
819 865 1.645710 TCGCCTTTCTTCCTCCTTCT 58.354 50.000 0.00 0.00 0.00 2.85
820 866 1.550976 TCGCCTTTCTTCCTCCTTCTC 59.449 52.381 0.00 0.00 0.00 2.87
821 867 1.406205 CGCCTTTCTTCCTCCTTCTCC 60.406 57.143 0.00 0.00 0.00 3.71
822 868 1.065053 GCCTTTCTTCCTCCTTCTCCC 60.065 57.143 0.00 0.00 0.00 4.30
823 869 2.556766 CCTTTCTTCCTCCTTCTCCCT 58.443 52.381 0.00 0.00 0.00 4.20
824 870 2.503765 CCTTTCTTCCTCCTTCTCCCTC 59.496 54.545 0.00 0.00 0.00 4.30
825 871 2.255770 TTCTTCCTCCTTCTCCCTCC 57.744 55.000 0.00 0.00 0.00 4.30
826 872 0.340208 TCTTCCTCCTTCTCCCTCCC 59.660 60.000 0.00 0.00 0.00 4.30
827 873 0.692756 CTTCCTCCTTCTCCCTCCCC 60.693 65.000 0.00 0.00 0.00 4.81
828 874 2.040359 CCTCCTTCTCCCTCCCCC 60.040 72.222 0.00 0.00 0.00 5.40
829 875 2.652113 CCTCCTTCTCCCTCCCCCT 61.652 68.421 0.00 0.00 0.00 4.79
830 876 1.398234 CTCCTTCTCCCTCCCCCTT 59.602 63.158 0.00 0.00 0.00 3.95
831 877 0.692756 CTCCTTCTCCCTCCCCCTTC 60.693 65.000 0.00 0.00 0.00 3.46
832 878 1.694525 CCTTCTCCCTCCCCCTTCC 60.695 68.421 0.00 0.00 0.00 3.46
833 879 1.398234 CTTCTCCCTCCCCCTTCCT 59.602 63.158 0.00 0.00 0.00 3.36
834 880 0.692756 CTTCTCCCTCCCCCTTCCTC 60.693 65.000 0.00 0.00 0.00 3.71
835 881 2.040359 CTCCCTCCCCCTTCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
836 882 2.543637 TCCCTCCCCCTTCCTCCT 60.544 66.667 0.00 0.00 0.00 3.69
837 883 2.040359 CCCTCCCCCTTCCTCCTC 60.040 72.222 0.00 0.00 0.00 3.71
942 1017 3.650950 GCCCTCAAGCTGACCCCA 61.651 66.667 0.00 0.00 0.00 4.96
1086 1161 2.263545 CTGGGCTCCATCATGATCCTA 58.736 52.381 4.86 1.07 30.82 2.94
1294 1708 1.087771 GTCCCGGCGATTTCGTGATT 61.088 55.000 9.30 0.00 42.22 2.57
1356 1776 3.653664 ATTTGCGGCGGGATTGGGA 62.654 57.895 9.78 0.00 0.00 4.37
1360 1780 4.891727 CGGCGGGATTGGGAGTCG 62.892 72.222 0.00 0.00 0.00 4.18
1361 1781 3.782443 GGCGGGATTGGGAGTCGT 61.782 66.667 0.00 0.00 0.00 4.34
1362 1782 2.202892 GCGGGATTGGGAGTCGTC 60.203 66.667 0.00 0.00 0.00 4.20
1374 1794 2.095059 GGGAGTCGTCGTTAGCTGTTAA 60.095 50.000 0.00 0.00 0.00 2.01
1404 1824 4.984785 GGTTCTTCAGAAAGCAATGTTTCC 59.015 41.667 0.00 0.00 37.16 3.13
1419 1839 6.332630 CAATGTTTCCTACATGGGTGAAATC 58.667 40.000 0.00 0.00 46.75 2.17
1420 1840 4.006989 TGTTTCCTACATGGGTGAAATCG 58.993 43.478 0.00 0.00 36.20 3.34
1421 1841 4.258543 GTTTCCTACATGGGTGAAATCGA 58.741 43.478 0.00 0.00 36.20 3.59
1424 1844 3.059884 CCTACATGGGTGAAATCGATCG 58.940 50.000 9.36 9.36 0.00 3.69
1481 1901 0.889994 TGGATTGTTGATGCAGGCAC 59.110 50.000 0.00 0.00 31.84 5.01
1482 1902 0.174162 GGATTGTTGATGCAGGCACC 59.826 55.000 0.00 0.00 0.00 5.01
1483 1903 0.179156 GATTGTTGATGCAGGCACCG 60.179 55.000 0.00 0.00 0.00 4.94
1537 1957 8.970859 ATGCTATGCTAGTTTCTTCTTAACAT 57.029 30.769 0.00 0.00 0.00 2.71
1543 1968 6.530534 TGCTAGTTTCTTCTTAACATCGCTAC 59.469 38.462 0.00 0.00 0.00 3.58
1606 2032 8.851541 AATTTGCAGAAATCAATGTTTGGTAT 57.148 26.923 0.00 0.00 30.02 2.73
1607 2033 7.655236 TTTGCAGAAATCAATGTTTGGTATG 57.345 32.000 0.00 0.00 0.00 2.39
1722 2153 1.081892 CATCTTTCTGTGCCAGTCCG 58.918 55.000 2.68 0.00 32.61 4.79
1765 2196 4.803098 TTGCTTCTCTAGGTGGTACTTC 57.197 45.455 0.00 0.00 0.00 3.01
1878 2399 4.464597 ACGCTTCCTAATGAGAGAAGTTCT 59.535 41.667 4.68 4.68 39.36 3.01
1931 2452 9.787435 AATGCATTTTGAATGCTATTGGATTAT 57.213 25.926 21.86 5.65 44.79 1.28
2007 2528 5.822519 AGTGGCATTATCTTGCGATTTAAGA 59.177 36.000 0.00 0.00 43.71 2.10
2012 2533 6.580041 GCATTATCTTGCGATTTAAGACATGG 59.420 38.462 0.00 0.00 37.03 3.66
2047 2576 3.617540 TGTCAGTGTTTTAATGGCACG 57.382 42.857 0.00 0.00 33.52 5.34
2057 2586 4.920640 TTTAATGGCACGGTTCTTTTGA 57.079 36.364 0.00 0.00 0.00 2.69
2101 2631 3.944055 TGGAGCTACTTCTCTGTTGTC 57.056 47.619 0.00 0.00 33.70 3.18
2200 2730 3.988976 AGCTCAGACTTCAATAGCCAA 57.011 42.857 0.00 0.00 33.63 4.52
2308 2838 0.737219 GGTGCCATCATTGCTCTGTC 59.263 55.000 0.00 0.00 0.00 3.51
2316 2846 4.940046 CCATCATTGCTCTGTCTGTAAGTT 59.060 41.667 0.00 0.00 33.76 2.66
2317 2847 5.163784 CCATCATTGCTCTGTCTGTAAGTTG 60.164 44.000 0.00 0.00 33.76 3.16
2362 2893 9.236006 GGATGAATGCTATGTTATTCCAGTTAT 57.764 33.333 0.00 0.00 33.43 1.89
2402 2933 3.188667 TCTGCATCGTACCGCTTATCTAG 59.811 47.826 0.00 0.00 0.00 2.43
2630 3320 9.539825 ACTAGTTGCTCTTTCTTATCATGTATG 57.460 33.333 0.00 0.00 0.00 2.39
3037 3737 1.601903 TGAACAATGCAACACCTCGTC 59.398 47.619 0.00 0.00 0.00 4.20
3050 3750 1.091771 CCTCGTCACATGTCCATGCC 61.092 60.000 7.18 0.00 42.39 4.40
3095 3795 3.721706 CTGCCACACCCCCTCCTC 61.722 72.222 0.00 0.00 0.00 3.71
3112 3812 5.426509 CCCTCCTCCATATATCTGTGCATAA 59.573 44.000 0.00 0.00 0.00 1.90
3206 3907 7.509141 TTGAAATGCAAGATTCACTAGTCAA 57.491 32.000 11.18 0.00 35.42 3.18
3207 3908 7.509141 TGAAATGCAAGATTCACTAGTCAAA 57.491 32.000 8.39 0.00 30.94 2.69
3208 3909 8.114331 TGAAATGCAAGATTCACTAGTCAAAT 57.886 30.769 8.39 0.00 30.94 2.32
3212 3913 8.798859 ATGCAAGATTCACTAGTCAAATTAGT 57.201 30.769 0.00 0.00 0.00 2.24
3325 4153 0.725686 CTGAAATCTGCGCTGTCCAG 59.274 55.000 9.73 10.57 0.00 3.86
3459 4287 1.499049 GTTGAACCACTCGTCCAGAC 58.501 55.000 0.00 0.00 0.00 3.51
3613 4441 5.007921 GGTACACCTGAACATTAACGTTGTT 59.992 40.000 11.99 7.51 39.91 2.83
3631 4459 7.404203 ACGTTGTTTGTCACTGTAATTAAGTC 58.596 34.615 0.00 0.00 0.00 3.01
3645 4473 9.186323 CTGTAATTAAGTCATAGAATCACTCCG 57.814 37.037 0.00 0.00 0.00 4.63
3668 4496 1.072806 ACCATCATGCAGTCACACACT 59.927 47.619 0.00 0.00 34.67 3.55
3669 4497 2.156917 CCATCATGCAGTCACACACTT 58.843 47.619 0.00 0.00 30.26 3.16
3677 4505 2.543848 GCAGTCACACACTTTCGATCAA 59.456 45.455 0.00 0.00 30.26 2.57
3818 4650 3.576078 TTGGACTGAAGGAGCTCAAAA 57.424 42.857 17.19 0.00 0.00 2.44
3977 4810 5.295787 TCCTAAATGCGTCACACCATTATTC 59.704 40.000 0.00 0.00 31.82 1.75
4034 4867 5.125100 TGATTTCAGCAACAGAATTGGAC 57.875 39.130 0.00 0.00 0.00 4.02
4039 4872 3.565482 TCAGCAACAGAATTGGACACTTC 59.435 43.478 0.00 0.00 0.00 3.01
4048 4881 4.946157 AGAATTGGACACTTCATGGACATC 59.054 41.667 5.40 0.00 0.00 3.06
4163 4996 6.422333 TGGATACCAAGCAAAATGTCTATCA 58.578 36.000 0.00 0.00 0.00 2.15
4190 5023 5.652994 TTACCTTTTTGTCAACTGCTTGT 57.347 34.783 0.00 0.00 0.00 3.16
4210 5043 2.095372 GTGAATCAATTTCCCCGTCGAC 59.905 50.000 5.18 5.18 33.04 4.20
4226 5059 3.997064 GACTGCGCGGATGCTCTGT 62.997 63.158 25.98 0.00 40.14 3.41
4232 5065 2.887568 CGGATGCTCTGTCGGCAC 60.888 66.667 0.00 0.00 42.69 5.01
4279 5112 2.177950 CTGCCACAGCTCATTGACC 58.822 57.895 0.00 0.00 40.80 4.02
4285 5118 1.816835 CACAGCTCATTGACCTGCATT 59.183 47.619 8.58 0.00 0.00 3.56
4304 5137 3.275617 TTTTCCTCCATGACATACCCG 57.724 47.619 0.00 0.00 0.00 5.28
4397 5244 1.598130 GGCAACCTTGACGAGCTGT 60.598 57.895 0.00 0.00 0.00 4.40
4538 5385 3.572642 TCGGCCTCATCTAATAAGACCA 58.427 45.455 0.00 0.00 33.57 4.02
4628 5475 2.632996 CCTGGAGAGTTACTTGTCCACA 59.367 50.000 11.84 0.00 35.22 4.17
4642 5489 2.367241 TGTCCACAGGATCGACTGAAAA 59.633 45.455 9.80 0.00 40.97 2.29
4713 5560 8.086522 GGTTATAGTTCTTTGCGTCCATATCTA 58.913 37.037 0.00 0.00 0.00 1.98
4725 5572 5.794894 CGTCCATATCTATACTTTTGGCCT 58.205 41.667 3.32 0.00 0.00 5.19
4758 5605 0.521291 ATTGTTTCCACCGCATGACG 59.479 50.000 0.00 0.00 43.15 4.35
4876 5723 0.109132 GCTTTGCCAAGGTCCAATCG 60.109 55.000 0.00 0.00 0.00 3.34
4940 5787 1.953686 CTGCAGCCTCTCTCCTAGTAC 59.046 57.143 0.00 0.00 0.00 2.73
4984 5831 3.434167 CCCCTGTATTCCAGATCCAACAG 60.434 52.174 0.00 0.00 44.49 3.16
5086 5933 2.207229 AAAGCCAAAACGCCCCTCC 61.207 57.895 0.00 0.00 0.00 4.30
5094 5941 0.755327 AAACGCCCCTCCCATTATGC 60.755 55.000 0.00 0.00 0.00 3.14
5136 5983 7.332182 TCAAAAGCAACGAATTTAACCTTTTGT 59.668 29.630 17.27 0.00 43.66 2.83
5189 6036 2.973694 CCTTGCTTGGGATGGATTTG 57.026 50.000 0.00 0.00 0.00 2.32
5222 6069 7.470079 CAAATGATGATACAGTTGACTCCAAG 58.530 38.462 0.00 0.00 44.85 3.61
5333 6184 8.832735 TGAGGTTCTTTCTTTACCCTATTGTAT 58.167 33.333 0.00 0.00 32.20 2.29
5334 6185 9.682465 GAGGTTCTTTCTTTACCCTATTGTATT 57.318 33.333 0.00 0.00 32.20 1.89
5335 6186 9.462606 AGGTTCTTTCTTTACCCTATTGTATTG 57.537 33.333 0.00 0.00 32.20 1.90
5336 6187 9.239551 GGTTCTTTCTTTACCCTATTGTATTGT 57.760 33.333 0.00 0.00 0.00 2.71
5681 6655 5.123227 CAGTTTTACACCTTCCTTGAGACA 58.877 41.667 0.00 0.00 0.00 3.41
5749 6723 1.757118 TGATGTCGAGATCCCAGGAAC 59.243 52.381 18.91 0.00 0.00 3.62
5808 6782 8.410673 TGGTAAATGCATTACTACTTTTTGGA 57.589 30.769 13.39 0.00 42.93 3.53
5860 6834 9.513906 TTGATTGAACATCCACTAAAACTATGA 57.486 29.630 0.00 0.00 0.00 2.15
5861 6835 9.685276 TGATTGAACATCCACTAAAACTATGAT 57.315 29.630 0.00 0.00 0.00 2.45
5862 6836 9.941664 GATTGAACATCCACTAAAACTATGATG 57.058 33.333 0.00 0.00 36.54 3.07
6106 7082 4.378874 CGGAAGAAGAATTTTGCTCAGGTC 60.379 45.833 0.00 0.00 0.00 3.85
6180 7156 6.707290 TGGTGCTAGTATGTGTCAAATTAGT 58.293 36.000 0.00 0.00 0.00 2.24
6366 7344 6.798315 ATAATCATTATGTGAGCTGAGCAC 57.202 37.500 7.39 0.00 40.92 4.40
6376 7354 5.244755 TGTGAGCTGAGCACATTGTTATAA 58.755 37.500 8.00 0.00 41.00 0.98
6426 7404 8.503428 AAATTTCCATGGGGCATGTATTAATA 57.497 30.769 13.02 0.00 39.94 0.98
6512 7492 4.940046 CAGAATCTAGCACTTGTGGTTGAT 59.060 41.667 18.64 18.64 34.36 2.57
6517 7497 3.896648 AGCACTTGTGGTTGATAAACG 57.103 42.857 0.00 0.00 0.00 3.60
6546 7526 8.900781 CATGTTGGGATATTCCATGATATTCTC 58.099 37.037 2.71 0.00 38.64 2.87
6548 7528 8.672329 TGTTGGGATATTCCATGATATTCTCTT 58.328 33.333 2.71 0.00 38.64 2.85
6732 7713 3.517500 TCAAGGGGGCAAAATATGGAAAC 59.482 43.478 0.00 0.00 0.00 2.78
6760 7741 6.228616 TGTCCTTGATCATGTCCGTATTTA 57.771 37.500 0.00 0.00 0.00 1.40
6793 7774 5.006386 ACATCTGAAACATGACCTTTCTCC 58.994 41.667 0.00 0.00 0.00 3.71
6797 7778 5.474532 TCTGAAACATGACCTTTCTCCATTG 59.525 40.000 0.00 0.00 0.00 2.82
6825 7806 2.435805 TCCTTCTTGCTGGCCATAGTAG 59.564 50.000 5.51 7.55 0.00 2.57
6826 7807 2.216898 CTTCTTGCTGGCCATAGTAGC 58.783 52.381 5.51 6.40 37.93 3.58
6828 7809 1.134401 TCTTGCTGGCCATAGTAGCAC 60.134 52.381 15.58 0.00 46.10 4.40
6829 7810 0.107214 TTGCTGGCCATAGTAGCACC 60.107 55.000 15.58 0.00 46.10 5.01
6830 7811 1.271127 TGCTGGCCATAGTAGCACCA 61.271 55.000 5.51 0.00 42.05 4.17
6831 7812 3.694364 CTGGCCATAGTAGCACCAG 57.306 57.895 5.51 0.00 41.78 4.00
6839 7820 3.193263 CATAGTAGCACCAGCAGACTTG 58.807 50.000 0.00 0.00 45.49 3.16
6914 7933 5.940470 ACAATGGTCTTGTTATCAGGTCTTC 59.060 40.000 0.00 0.00 0.00 2.87
6965 7984 2.769095 GGCATACTCAGAAGAGGACCTT 59.231 50.000 0.00 0.00 46.44 3.50
6995 8014 4.828925 GCTCTGCAGGGCCTCGAC 62.829 72.222 28.97 0.00 0.00 4.20
7059 8079 1.685765 GAATTTCCCCAGTGCCCCC 60.686 63.158 0.00 0.00 0.00 5.40
7122 8150 7.244166 TGTAAAATTCGACGGTTTTCACTTA 57.756 32.000 12.79 0.00 0.00 2.24
7141 8169 0.541392 AAGCTGTCGATGGTATGGCA 59.459 50.000 0.00 0.00 0.00 4.92
7151 8179 5.743872 GTCGATGGTATGGCAAAAGAAAATC 59.256 40.000 0.00 0.00 0.00 2.17
7314 8343 4.149598 TGTACTTTGACTGAGAGTAGCCA 58.850 43.478 0.00 0.00 0.00 4.75
7322 8351 4.528206 TGACTGAGAGTAGCCAATTCAGAA 59.472 41.667 6.79 0.00 38.81 3.02
7358 8387 6.416455 TGTTGATGAAAAATGACTTGCGTAAC 59.584 34.615 0.00 0.00 0.00 2.50
7376 8405 3.992943 AACTCGGTGGATTTGTGGATA 57.007 42.857 0.00 0.00 0.00 2.59
7377 8406 4.503714 AACTCGGTGGATTTGTGGATAT 57.496 40.909 0.00 0.00 0.00 1.63
7645 8803 7.801752 AGCTCGTTAATTTGAAGAAGAAGAAG 58.198 34.615 0.00 0.00 0.00 2.85
7702 8860 5.965334 GTGCGTAAAGTTTGACCATGATATG 59.035 40.000 0.00 0.00 0.00 1.78
7754 8914 6.265577 AGGACACTTTTCGTGATTTTGAAAG 58.734 36.000 0.00 0.00 46.81 2.62
7784 8944 9.391006 TGAACAGTCACTATTCACTTTTAAACT 57.609 29.630 0.00 0.00 0.00 2.66
7785 8945 9.651718 GAACAGTCACTATTCACTTTTAAACTG 57.348 33.333 0.00 0.00 37.13 3.16
7786 8946 8.732746 ACAGTCACTATTCACTTTTAAACTGT 57.267 30.769 0.00 0.00 38.89 3.55
7787 8947 8.612619 ACAGTCACTATTCACTTTTAAACTGTG 58.387 33.333 12.01 12.01 41.30 3.66
7788 8948 7.587757 CAGTCACTATTCACTTTTAAACTGTGC 59.412 37.037 12.96 0.00 0.00 4.57
7789 8949 7.282224 AGTCACTATTCACTTTTAAACTGTGCA 59.718 33.333 12.96 5.78 0.00 4.57
7790 8950 7.587757 GTCACTATTCACTTTTAAACTGTGCAG 59.412 37.037 12.96 11.84 0.00 4.41
7791 8951 6.857964 CACTATTCACTTTTAAACTGTGCAGG 59.142 38.462 12.96 0.00 0.00 4.85
7792 8952 5.852282 ATTCACTTTTAAACTGTGCAGGT 57.148 34.783 12.96 0.00 0.00 4.00
7793 8953 5.652994 TTCACTTTTAAACTGTGCAGGTT 57.347 34.783 7.66 7.66 41.91 3.50
7794 8954 5.652994 TCACTTTTAAACTGTGCAGGTTT 57.347 34.783 17.86 17.86 39.43 3.27
7795 8955 6.761099 TCACTTTTAAACTGTGCAGGTTTA 57.239 33.333 16.30 16.30 39.43 2.01
7796 8956 6.791303 TCACTTTTAAACTGTGCAGGTTTAG 58.209 36.000 18.24 13.97 39.43 1.85
7797 8957 5.977129 CACTTTTAAACTGTGCAGGTTTAGG 59.023 40.000 18.24 15.53 39.43 2.69
7798 8958 5.655090 ACTTTTAAACTGTGCAGGTTTAGGT 59.345 36.000 18.24 15.93 39.43 3.08
7799 8959 5.508200 TTTAAACTGTGCAGGTTTAGGTG 57.492 39.130 18.24 0.00 39.43 4.00
7800 8960 2.729028 AACTGTGCAGGTTTAGGTGT 57.271 45.000 4.11 0.00 0.00 4.16
7801 8961 1.967319 ACTGTGCAGGTTTAGGTGTG 58.033 50.000 4.11 0.00 0.00 3.82
7802 8962 1.238439 CTGTGCAGGTTTAGGTGTGG 58.762 55.000 0.00 0.00 0.00 4.17
7803 8963 0.840617 TGTGCAGGTTTAGGTGTGGA 59.159 50.000 0.00 0.00 0.00 4.02
7804 8964 1.213182 TGTGCAGGTTTAGGTGTGGAA 59.787 47.619 0.00 0.00 0.00 3.53
7805 8965 2.158534 TGTGCAGGTTTAGGTGTGGAAT 60.159 45.455 0.00 0.00 0.00 3.01
7806 8966 2.228822 GTGCAGGTTTAGGTGTGGAATG 59.771 50.000 0.00 0.00 0.00 2.67
7807 8967 2.107378 TGCAGGTTTAGGTGTGGAATGA 59.893 45.455 0.00 0.00 0.00 2.57
7808 8968 3.153919 GCAGGTTTAGGTGTGGAATGAA 58.846 45.455 0.00 0.00 0.00 2.57
7809 8969 3.572255 GCAGGTTTAGGTGTGGAATGAAA 59.428 43.478 0.00 0.00 0.00 2.69
7810 8970 4.220602 GCAGGTTTAGGTGTGGAATGAAAT 59.779 41.667 0.00 0.00 0.00 2.17
7811 8971 5.713025 CAGGTTTAGGTGTGGAATGAAATG 58.287 41.667 0.00 0.00 0.00 2.32
7812 8972 5.243730 CAGGTTTAGGTGTGGAATGAAATGT 59.756 40.000 0.00 0.00 0.00 2.71
7813 8973 5.838521 AGGTTTAGGTGTGGAATGAAATGTT 59.161 36.000 0.00 0.00 0.00 2.71
7814 8974 6.015434 AGGTTTAGGTGTGGAATGAAATGTTC 60.015 38.462 0.00 0.00 0.00 3.18
7815 8975 5.975693 TTAGGTGTGGAATGAAATGTTCC 57.024 39.130 0.00 0.00 44.32 3.62
7823 8983 5.467035 GGAATGAAATGTTCCAGGTTCAA 57.533 39.130 0.25 0.00 43.67 2.69
7824 8984 5.852827 GGAATGAAATGTTCCAGGTTCAAA 58.147 37.500 0.25 0.00 43.67 2.69
7825 8985 6.287525 GGAATGAAATGTTCCAGGTTCAAAA 58.712 36.000 0.25 0.00 43.67 2.44
7826 8986 6.765512 GGAATGAAATGTTCCAGGTTCAAAAA 59.234 34.615 0.25 0.00 43.67 1.94
7827 8987 7.445096 GGAATGAAATGTTCCAGGTTCAAAAAT 59.555 33.333 0.25 0.00 43.67 1.82
7828 8988 9.487790 GAATGAAATGTTCCAGGTTCAAAAATA 57.512 29.630 0.00 0.00 33.93 1.40
7829 8989 9.844257 AATGAAATGTTCCAGGTTCAAAAATAA 57.156 25.926 0.00 0.00 33.93 1.40
7830 8990 9.844257 ATGAAATGTTCCAGGTTCAAAAATAAA 57.156 25.926 0.00 0.00 33.93 1.40
7831 8991 9.844257 TGAAATGTTCCAGGTTCAAAAATAAAT 57.156 25.926 0.00 0.00 0.00 1.40
7893 9646 2.299326 AGTTTGATTTGCCTGCCTCT 57.701 45.000 0.00 0.00 0.00 3.69
7894 9647 2.165998 AGTTTGATTTGCCTGCCTCTC 58.834 47.619 0.00 0.00 0.00 3.20
7904 9657 2.032528 TGCCTCTCGGGTTGCTTG 59.967 61.111 0.86 0.00 37.43 4.01
7906 9659 2.045926 CCTCTCGGGTTGCTTGGG 60.046 66.667 0.00 0.00 0.00 4.12
7945 10126 3.197983 CCTAGCTAACAAACCCTAGTGCT 59.802 47.826 0.00 0.00 0.00 4.40
7946 10127 4.404715 CCTAGCTAACAAACCCTAGTGCTA 59.595 45.833 0.00 0.00 0.00 3.49
7947 10128 4.473477 AGCTAACAAACCCTAGTGCTAG 57.527 45.455 0.00 0.00 0.00 3.42
7956 10137 2.295253 CCTAGTGCTAGGGTTTGACG 57.705 55.000 15.67 0.00 46.96 4.35
7957 10138 1.822990 CCTAGTGCTAGGGTTTGACGA 59.177 52.381 15.67 0.00 46.96 4.20
7958 10139 2.232941 CCTAGTGCTAGGGTTTGACGAA 59.767 50.000 15.67 0.00 46.96 3.85
7960 10141 2.767505 AGTGCTAGGGTTTGACGAAAG 58.232 47.619 0.00 0.00 0.00 2.62
7962 10143 1.271163 TGCTAGGGTTTGACGAAAGGG 60.271 52.381 0.00 0.00 0.00 3.95
7963 10144 1.271217 GCTAGGGTTTGACGAAAGGGT 60.271 52.381 0.00 0.00 0.00 4.34
7964 10145 2.423577 CTAGGGTTTGACGAAAGGGTG 58.576 52.381 0.00 0.00 0.00 4.61
7965 10146 0.179001 AGGGTTTGACGAAAGGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
7966 10147 1.176619 GGGTTTGACGAAAGGGTGGG 61.177 60.000 0.00 0.00 0.00 4.61
7968 10149 1.235724 GTTTGACGAAAGGGTGGGAG 58.764 55.000 0.00 0.00 0.00 4.30
7969 10150 0.841289 TTTGACGAAAGGGTGGGAGT 59.159 50.000 0.00 0.00 0.00 3.85
7970 10151 1.719529 TTGACGAAAGGGTGGGAGTA 58.280 50.000 0.00 0.00 0.00 2.59
7972 10153 1.829222 TGACGAAAGGGTGGGAGTATC 59.171 52.381 0.00 0.00 0.00 2.24
7973 10154 0.822164 ACGAAAGGGTGGGAGTATCG 59.178 55.000 0.00 0.00 34.37 2.92
7986 10167 2.854777 GGAGTATCGCATATCATCGTGC 59.145 50.000 0.00 0.00 37.97 5.34
7987 10168 3.428180 GGAGTATCGCATATCATCGTGCT 60.428 47.826 0.00 0.00 39.16 4.40
7988 10169 3.505836 AGTATCGCATATCATCGTGCTG 58.494 45.455 0.00 0.00 39.16 4.41
7989 10170 1.073964 ATCGCATATCATCGTGCTGC 58.926 50.000 0.00 0.00 39.16 5.25
7991 10172 1.494628 GCATATCATCGTGCTGCGG 59.505 57.895 0.00 0.00 41.72 5.69
7992 10173 1.224069 GCATATCATCGTGCTGCGGT 61.224 55.000 0.00 0.00 41.72 5.68
7993 10174 1.220529 CATATCATCGTGCTGCGGTT 58.779 50.000 0.00 0.00 41.72 4.44
7996 10177 3.803082 CATCGTGCTGCGGTTGGG 61.803 66.667 0.00 0.00 41.72 4.12
8000 10181 3.964875 GTGCTGCGGTTGGGTGTG 61.965 66.667 0.00 0.00 0.00 3.82
8003 10184 3.286751 CTGCGGTTGGGTGTGGTG 61.287 66.667 0.00 0.00 0.00 4.17
8004 10185 4.116585 TGCGGTTGGGTGTGGTGT 62.117 61.111 0.00 0.00 0.00 4.16
8005 10186 3.284449 GCGGTTGGGTGTGGTGTC 61.284 66.667 0.00 0.00 0.00 3.67
8008 10189 1.528309 GGTTGGGTGTGGTGTCCTG 60.528 63.158 0.00 0.00 0.00 3.86
8009 10190 2.193536 GTTGGGTGTGGTGTCCTGC 61.194 63.158 0.00 0.00 0.00 4.85
8010 10191 3.765894 TTGGGTGTGGTGTCCTGCG 62.766 63.158 0.00 0.00 0.00 5.18
8012 10193 4.626081 GGTGTGGTGTCCTGCGCT 62.626 66.667 9.73 0.00 0.00 5.92
8013 10194 2.342279 GTGTGGTGTCCTGCGCTA 59.658 61.111 9.73 0.00 0.00 4.26
8014 10195 1.079127 GTGTGGTGTCCTGCGCTAT 60.079 57.895 9.73 0.00 0.00 2.97
8015 10196 1.079197 TGTGGTGTCCTGCGCTATG 60.079 57.895 9.73 0.00 0.00 2.23
8016 10197 1.815421 GTGGTGTCCTGCGCTATGG 60.815 63.158 9.73 8.71 0.00 2.74
8018 10199 1.815421 GGTGTCCTGCGCTATGGTG 60.815 63.158 9.73 0.00 0.00 4.17
8020 10201 0.673644 GTGTCCTGCGCTATGGTGTT 60.674 55.000 9.73 0.00 0.00 3.32
8021 10202 0.673333 TGTCCTGCGCTATGGTGTTG 60.673 55.000 9.73 0.00 0.00 3.33
8022 10203 1.078497 TCCTGCGCTATGGTGTTGG 60.078 57.895 9.73 0.00 0.00 3.77
8023 10204 2.114670 CCTGCGCTATGGTGTTGGG 61.115 63.158 9.73 0.00 0.00 4.12
8024 10205 2.045438 TGCGCTATGGTGTTGGGG 60.045 61.111 9.73 0.00 0.00 4.96
8025 10206 3.518068 GCGCTATGGTGTTGGGGC 61.518 66.667 0.00 0.00 0.00 5.80
8026 10207 2.272146 CGCTATGGTGTTGGGGCT 59.728 61.111 0.00 0.00 0.00 5.19
8027 10208 1.819632 CGCTATGGTGTTGGGGCTC 60.820 63.158 0.00 0.00 0.00 4.70
8028 10209 1.819632 GCTATGGTGTTGGGGCTCG 60.820 63.158 0.00 0.00 0.00 5.03
8029 10210 1.153168 CTATGGTGTTGGGGCTCGG 60.153 63.158 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.754382 GTGAAATTATGCATCAAATAATCAGGT 57.246 29.630 0.19 0.00 30.65 4.00
7 8 9.752961 TGTGAAATTATGCATCAAATAATCAGG 57.247 29.630 0.19 0.00 30.65 3.86
11 12 9.496873 CCCATGTGAAATTATGCATCAAATAAT 57.503 29.630 0.19 0.00 32.75 1.28
12 13 8.484575 ACCCATGTGAAATTATGCATCAAATAA 58.515 29.630 0.19 0.00 0.00 1.40
13 14 8.020777 ACCCATGTGAAATTATGCATCAAATA 57.979 30.769 0.19 0.00 0.00 1.40
14 15 6.891388 ACCCATGTGAAATTATGCATCAAAT 58.109 32.000 0.19 0.00 0.00 2.32
15 16 6.297080 ACCCATGTGAAATTATGCATCAAA 57.703 33.333 0.19 0.00 0.00 2.69
16 17 5.936187 ACCCATGTGAAATTATGCATCAA 57.064 34.783 0.19 0.00 0.00 2.57
17 18 7.123997 AGTTTACCCATGTGAAATTATGCATCA 59.876 33.333 0.19 0.00 0.00 3.07
18 19 7.491682 AGTTTACCCATGTGAAATTATGCATC 58.508 34.615 0.19 0.00 0.00 3.91
19 20 7.422465 AGTTTACCCATGTGAAATTATGCAT 57.578 32.000 3.79 3.79 0.00 3.96
20 21 6.849085 AGTTTACCCATGTGAAATTATGCA 57.151 33.333 0.00 0.00 0.00 3.96
21 22 9.816354 ATTTAGTTTACCCATGTGAAATTATGC 57.184 29.630 0.00 0.00 0.00 3.14
49 50 5.714333 TGCATCATCTAAACCAGGCTAAAAA 59.286 36.000 0.00 0.00 0.00 1.94
50 51 5.260424 TGCATCATCTAAACCAGGCTAAAA 58.740 37.500 0.00 0.00 0.00 1.52
51 52 4.854173 TGCATCATCTAAACCAGGCTAAA 58.146 39.130 0.00 0.00 0.00 1.85
52 53 4.502105 TGCATCATCTAAACCAGGCTAA 57.498 40.909 0.00 0.00 0.00 3.09
53 54 4.199310 GTTGCATCATCTAAACCAGGCTA 58.801 43.478 0.00 0.00 0.00 3.93
54 55 3.019564 GTTGCATCATCTAAACCAGGCT 58.980 45.455 0.00 0.00 0.00 4.58
55 56 2.099756 GGTTGCATCATCTAAACCAGGC 59.900 50.000 0.00 0.00 41.44 4.85
56 57 2.689983 GGGTTGCATCATCTAAACCAGG 59.310 50.000 5.84 0.00 43.20 4.45
57 58 3.355378 TGGGTTGCATCATCTAAACCAG 58.645 45.455 5.84 0.00 43.20 4.00
58 59 3.448093 TGGGTTGCATCATCTAAACCA 57.552 42.857 5.84 0.00 43.20 3.67
59 60 4.799564 TTTGGGTTGCATCATCTAAACC 57.200 40.909 0.00 0.00 41.14 3.27
60 61 7.520686 CAAAATTTGGGTTGCATCATCTAAAC 58.479 34.615 0.00 0.00 0.00 2.01
61 62 7.670009 CAAAATTTGGGTTGCATCATCTAAA 57.330 32.000 0.00 0.00 0.00 1.85
77 78 6.479095 AATTACGACCAATGCCAAAATTTG 57.521 33.333 0.00 0.00 0.00 2.32
78 79 6.072783 CCAAATTACGACCAATGCCAAAATTT 60.073 34.615 0.00 0.00 0.00 1.82
79 80 5.411053 CCAAATTACGACCAATGCCAAAATT 59.589 36.000 0.00 0.00 0.00 1.82
80 81 4.934602 CCAAATTACGACCAATGCCAAAAT 59.065 37.500 0.00 0.00 0.00 1.82
81 82 4.202264 ACCAAATTACGACCAATGCCAAAA 60.202 37.500 0.00 0.00 0.00 2.44
82 83 3.322254 ACCAAATTACGACCAATGCCAAA 59.678 39.130 0.00 0.00 0.00 3.28
83 84 2.894126 ACCAAATTACGACCAATGCCAA 59.106 40.909 0.00 0.00 0.00 4.52
84 85 2.520069 ACCAAATTACGACCAATGCCA 58.480 42.857 0.00 0.00 0.00 4.92
85 86 3.692593 ACTACCAAATTACGACCAATGCC 59.307 43.478 0.00 0.00 0.00 4.40
86 87 4.957759 ACTACCAAATTACGACCAATGC 57.042 40.909 0.00 0.00 0.00 3.56
87 88 6.737254 AGAACTACCAAATTACGACCAATG 57.263 37.500 0.00 0.00 0.00 2.82
88 89 6.938030 TGAAGAACTACCAAATTACGACCAAT 59.062 34.615 0.00 0.00 0.00 3.16
89 90 6.289834 TGAAGAACTACCAAATTACGACCAA 58.710 36.000 0.00 0.00 0.00 3.67
90 91 5.856156 TGAAGAACTACCAAATTACGACCA 58.144 37.500 0.00 0.00 0.00 4.02
91 92 5.163884 GCTGAAGAACTACCAAATTACGACC 60.164 44.000 0.00 0.00 0.00 4.79
92 93 5.638234 AGCTGAAGAACTACCAAATTACGAC 59.362 40.000 0.00 0.00 0.00 4.34
93 94 5.637810 CAGCTGAAGAACTACCAAATTACGA 59.362 40.000 8.42 0.00 0.00 3.43
94 95 5.637810 TCAGCTGAAGAACTACCAAATTACG 59.362 40.000 15.67 0.00 0.00 3.18
95 96 6.651225 ACTCAGCTGAAGAACTACCAAATTAC 59.349 38.462 18.85 0.00 0.00 1.89
96 97 6.650807 CACTCAGCTGAAGAACTACCAAATTA 59.349 38.462 18.85 0.00 0.00 1.40
97 98 5.471456 CACTCAGCTGAAGAACTACCAAATT 59.529 40.000 18.85 0.00 0.00 1.82
98 99 4.999950 CACTCAGCTGAAGAACTACCAAAT 59.000 41.667 18.85 0.00 0.00 2.32
99 100 4.100963 TCACTCAGCTGAAGAACTACCAAA 59.899 41.667 18.85 0.00 0.00 3.28
100 101 3.641436 TCACTCAGCTGAAGAACTACCAA 59.359 43.478 18.85 0.00 0.00 3.67
101 102 3.005897 GTCACTCAGCTGAAGAACTACCA 59.994 47.826 18.85 0.00 0.00 3.25
102 103 3.005897 TGTCACTCAGCTGAAGAACTACC 59.994 47.826 18.85 7.07 0.00 3.18
103 104 3.984633 GTGTCACTCAGCTGAAGAACTAC 59.015 47.826 18.85 13.44 0.00 2.73
104 105 3.636764 TGTGTCACTCAGCTGAAGAACTA 59.363 43.478 18.85 6.29 0.00 2.24
105 106 2.432146 TGTGTCACTCAGCTGAAGAACT 59.568 45.455 18.85 0.00 0.00 3.01
106 107 2.826428 TGTGTCACTCAGCTGAAGAAC 58.174 47.619 18.85 15.15 0.00 3.01
107 108 3.758755 ATGTGTCACTCAGCTGAAGAA 57.241 42.857 18.85 2.56 0.00 2.52
108 109 3.070015 TGAATGTGTCACTCAGCTGAAGA 59.930 43.478 18.85 15.53 0.00 2.87
109 110 3.396560 TGAATGTGTCACTCAGCTGAAG 58.603 45.455 18.85 13.36 0.00 3.02
110 111 3.473923 TGAATGTGTCACTCAGCTGAA 57.526 42.857 18.85 0.00 0.00 3.02
111 112 3.690475 ATGAATGTGTCACTCAGCTGA 57.310 42.857 17.19 17.19 39.72 4.26
112 113 4.473199 CAAATGAATGTGTCACTCAGCTG 58.527 43.478 7.63 7.63 39.72 4.24
113 114 3.504906 CCAAATGAATGTGTCACTCAGCT 59.495 43.478 4.27 0.00 39.72 4.24
114 115 3.503363 TCCAAATGAATGTGTCACTCAGC 59.497 43.478 4.27 0.00 39.72 4.26
115 116 4.999311 TCTCCAAATGAATGTGTCACTCAG 59.001 41.667 4.27 0.00 39.72 3.35
116 117 4.971939 TCTCCAAATGAATGTGTCACTCA 58.028 39.130 4.27 0.83 39.72 3.41
117 118 5.618640 GCTTCTCCAAATGAATGTGTCACTC 60.619 44.000 4.27 0.00 39.72 3.51
118 119 4.217118 GCTTCTCCAAATGAATGTGTCACT 59.783 41.667 4.27 0.00 39.72 3.41
119 120 4.022935 TGCTTCTCCAAATGAATGTGTCAC 60.023 41.667 0.00 0.00 39.72 3.67
120 121 4.022935 GTGCTTCTCCAAATGAATGTGTCA 60.023 41.667 0.00 0.00 41.67 3.58
121 122 4.217118 AGTGCTTCTCCAAATGAATGTGTC 59.783 41.667 0.00 0.00 0.00 3.67
122 123 4.147321 AGTGCTTCTCCAAATGAATGTGT 58.853 39.130 0.00 0.00 0.00 3.72
123 124 4.778534 AGTGCTTCTCCAAATGAATGTG 57.221 40.909 0.00 0.00 0.00 3.21
124 125 4.397417 GCTAGTGCTTCTCCAAATGAATGT 59.603 41.667 0.00 0.00 36.03 2.71
125 126 4.918037 GCTAGTGCTTCTCCAAATGAATG 58.082 43.478 0.00 0.00 36.03 2.67
140 141 2.482839 GGTCTCTGATTCCAGCTAGTGC 60.483 54.545 0.00 0.00 40.20 4.40
141 142 3.030291 AGGTCTCTGATTCCAGCTAGTG 58.970 50.000 0.00 0.00 40.20 2.74
142 143 3.396685 AGGTCTCTGATTCCAGCTAGT 57.603 47.619 0.00 0.00 40.20 2.57
143 144 6.418057 AAATAGGTCTCTGATTCCAGCTAG 57.582 41.667 0.00 0.00 40.20 3.42
144 145 6.814954 AAAATAGGTCTCTGATTCCAGCTA 57.185 37.500 0.00 0.00 40.20 3.32
145 146 5.707066 AAAATAGGTCTCTGATTCCAGCT 57.293 39.130 0.00 0.00 40.20 4.24
175 176 9.914834 ACCACATTAACTTATAATAAGCAGGAA 57.085 29.630 0.00 0.00 0.00 3.36
176 177 9.555727 GACCACATTAACTTATAATAAGCAGGA 57.444 33.333 0.00 0.00 0.00 3.86
177 178 8.784043 GGACCACATTAACTTATAATAAGCAGG 58.216 37.037 0.00 0.00 0.00 4.85
178 179 8.784043 GGGACCACATTAACTTATAATAAGCAG 58.216 37.037 0.00 0.00 0.00 4.24
179 180 7.442969 CGGGACCACATTAACTTATAATAAGCA 59.557 37.037 0.00 0.00 0.00 3.91
180 181 7.443272 ACGGGACCACATTAACTTATAATAAGC 59.557 37.037 0.00 0.00 0.00 3.09
181 182 8.897872 ACGGGACCACATTAACTTATAATAAG 57.102 34.615 0.00 0.00 0.00 1.73
182 183 9.111613 CAACGGGACCACATTAACTTATAATAA 57.888 33.333 0.00 0.00 0.00 1.40
183 184 8.266473 ACAACGGGACCACATTAACTTATAATA 58.734 33.333 0.00 0.00 0.00 0.98
184 185 7.114095 ACAACGGGACCACATTAACTTATAAT 58.886 34.615 0.00 0.00 0.00 1.28
185 186 6.474630 ACAACGGGACCACATTAACTTATAA 58.525 36.000 0.00 0.00 0.00 0.98
186 187 6.052405 ACAACGGGACCACATTAACTTATA 57.948 37.500 0.00 0.00 0.00 0.98
187 188 4.913784 ACAACGGGACCACATTAACTTAT 58.086 39.130 0.00 0.00 0.00 1.73
188 189 4.354893 ACAACGGGACCACATTAACTTA 57.645 40.909 0.00 0.00 0.00 2.24
189 190 3.217681 ACAACGGGACCACATTAACTT 57.782 42.857 0.00 0.00 0.00 2.66
190 191 2.943036 ACAACGGGACCACATTAACT 57.057 45.000 0.00 0.00 0.00 2.24
191 192 4.408993 GTTACAACGGGACCACATTAAC 57.591 45.455 0.00 0.00 0.00 2.01
213 214 0.171903 TACTAGAAGAACGCCCGTGC 59.828 55.000 0.00 0.00 0.00 5.34
214 215 1.468736 GGTACTAGAAGAACGCCCGTG 60.469 57.143 0.00 0.00 0.00 4.94
215 216 0.813821 GGTACTAGAAGAACGCCCGT 59.186 55.000 0.00 0.00 0.00 5.28
216 217 0.813184 TGGTACTAGAAGAACGCCCG 59.187 55.000 0.00 0.00 0.00 6.13
217 218 3.538634 ATTGGTACTAGAAGAACGCCC 57.461 47.619 0.00 0.00 0.00 6.13
218 219 6.759827 TCATTTATTGGTACTAGAAGAACGCC 59.240 38.462 0.00 0.00 0.00 5.68
219 220 7.766219 TCATTTATTGGTACTAGAAGAACGC 57.234 36.000 0.00 0.00 0.00 4.84
220 221 9.367444 AGTTCATTTATTGGTACTAGAAGAACG 57.633 33.333 0.00 0.00 36.52 3.95
222 223 9.582431 CGAGTTCATTTATTGGTACTAGAAGAA 57.418 33.333 0.00 0.00 0.00 2.52
223 224 8.746530 ACGAGTTCATTTATTGGTACTAGAAGA 58.253 33.333 0.00 0.00 0.00 2.87
224 225 8.928270 ACGAGTTCATTTATTGGTACTAGAAG 57.072 34.615 0.00 0.00 0.00 2.85
225 226 8.746530 AGACGAGTTCATTTATTGGTACTAGAA 58.253 33.333 0.00 0.00 0.00 2.10
226 227 8.289939 AGACGAGTTCATTTATTGGTACTAGA 57.710 34.615 0.00 0.00 0.00 2.43
227 228 8.928270 AAGACGAGTTCATTTATTGGTACTAG 57.072 34.615 0.00 0.00 0.00 2.57
228 229 9.715121 AAAAGACGAGTTCATTTATTGGTACTA 57.285 29.630 0.00 0.00 0.00 1.82
229 230 8.617290 AAAAGACGAGTTCATTTATTGGTACT 57.383 30.769 0.00 0.00 0.00 2.73
230 231 9.750882 GTAAAAGACGAGTTCATTTATTGGTAC 57.249 33.333 0.00 0.00 31.73 3.34
231 232 9.715121 AGTAAAAGACGAGTTCATTTATTGGTA 57.285 29.630 0.00 0.00 31.73 3.25
232 233 8.617290 AGTAAAAGACGAGTTCATTTATTGGT 57.383 30.769 0.00 0.00 31.73 3.67
233 234 8.175716 GGAGTAAAAGACGAGTTCATTTATTGG 58.824 37.037 0.00 0.00 31.73 3.16
234 235 8.936864 AGGAGTAAAAGACGAGTTCATTTATTG 58.063 33.333 0.00 0.00 31.73 1.90
235 236 9.152595 GAGGAGTAAAAGACGAGTTCATTTATT 57.847 33.333 0.00 0.00 31.73 1.40
246 247 3.373439 GCGTAGAGAGGAGTAAAAGACGA 59.627 47.826 0.00 0.00 0.00 4.20
284 285 2.970324 GCGTGGACGAGGTGCAAA 60.970 61.111 2.73 0.00 43.02 3.68
302 303 3.057734 GGTGAACGTCGATCTTCTTGTT 58.942 45.455 0.00 0.00 0.00 2.83
337 338 2.859538 GGATTTTATACGTCGTTCGCCA 59.140 45.455 1.78 0.00 44.19 5.69
339 340 3.181178 GGAGGATTTTATACGTCGTTCGC 59.819 47.826 1.78 0.00 44.19 4.70
348 349 6.791867 AGCAAAAAGGGGAGGATTTTATAC 57.208 37.500 0.00 0.00 0.00 1.47
384 385 7.222611 CCTTGTGGTGTTATTTCAAAGTTCAAG 59.777 37.037 0.00 0.00 0.00 3.02
409 410 6.183360 CCCTAATCATCCAACCACATAAAACC 60.183 42.308 0.00 0.00 0.00 3.27
428 430 3.532102 GGGATATCACTGTCCCCCTAAT 58.468 50.000 4.83 0.00 44.99 1.73
475 519 5.998454 AATCTAGGAAAATGTGAGCATCG 57.002 39.130 0.00 0.00 38.61 3.84
503 547 2.730090 GCGCACATCACCAGAATTCTTG 60.730 50.000 4.86 4.96 0.00 3.02
505 549 1.089920 GCGCACATCACCAGAATTCT 58.910 50.000 0.30 0.88 0.00 2.40
511 555 3.190849 CCGAGCGCACATCACCAG 61.191 66.667 11.47 0.00 0.00 4.00
512 556 4.002506 ACCGAGCGCACATCACCA 62.003 61.111 11.47 0.00 0.00 4.17
524 568 2.317149 GAATGCCTCCTCCCACCGAG 62.317 65.000 0.00 0.00 38.46 4.63
527 571 2.597903 GGAATGCCTCCTCCCACC 59.402 66.667 0.00 0.00 41.61 4.61
532 576 0.250081 GTCGATGGGAATGCCTCCTC 60.250 60.000 0.00 0.00 44.68 3.71
534 578 1.001406 CTAGTCGATGGGAATGCCTCC 59.999 57.143 0.00 0.00 44.54 4.30
546 590 7.934665 ACTAAGCCGATATATCATCTAGTCGAT 59.065 37.037 13.11 0.00 0.00 3.59
548 592 7.439955 AGACTAAGCCGATATATCATCTAGTCG 59.560 40.741 21.26 7.80 35.54 4.18
550 594 8.268605 TGAGACTAAGCCGATATATCATCTAGT 58.731 37.037 13.11 11.85 0.00 2.57
551 595 8.669946 TGAGACTAAGCCGATATATCATCTAG 57.330 38.462 13.11 9.23 0.00 2.43
553 597 9.283768 CTATGAGACTAAGCCGATATATCATCT 57.716 37.037 13.11 5.83 0.00 2.90
554 598 8.511321 CCTATGAGACTAAGCCGATATATCATC 58.489 40.741 13.11 3.68 0.00 2.92
555 599 8.001875 ACCTATGAGACTAAGCCGATATATCAT 58.998 37.037 13.11 0.00 0.00 2.45
556 600 7.347252 ACCTATGAGACTAAGCCGATATATCA 58.653 38.462 13.11 0.00 0.00 2.15
557 601 7.307514 CGACCTATGAGACTAAGCCGATATATC 60.308 44.444 2.34 2.34 0.00 1.63
558 602 6.483974 CGACCTATGAGACTAAGCCGATATAT 59.516 42.308 0.00 0.00 0.00 0.86
559 603 5.816258 CGACCTATGAGACTAAGCCGATATA 59.184 44.000 0.00 0.00 0.00 0.86
561 605 4.001652 CGACCTATGAGACTAAGCCGATA 58.998 47.826 0.00 0.00 0.00 2.92
562 606 2.814919 CGACCTATGAGACTAAGCCGAT 59.185 50.000 0.00 0.00 0.00 4.18
563 607 2.219458 CGACCTATGAGACTAAGCCGA 58.781 52.381 0.00 0.00 0.00 5.54
564 608 1.948145 ACGACCTATGAGACTAAGCCG 59.052 52.381 0.00 0.00 0.00 5.52
565 609 2.950309 TCACGACCTATGAGACTAAGCC 59.050 50.000 0.00 0.00 0.00 4.35
566 610 3.628487 ACTCACGACCTATGAGACTAAGC 59.372 47.826 8.92 0.00 45.46 3.09
567 611 6.566942 GCATACTCACGACCTATGAGACTAAG 60.567 46.154 8.92 0.00 45.46 2.18
568 612 5.238868 GCATACTCACGACCTATGAGACTAA 59.761 44.000 8.92 0.00 45.46 2.24
569 613 4.755629 GCATACTCACGACCTATGAGACTA 59.244 45.833 8.92 0.00 45.46 2.59
570 614 3.566322 GCATACTCACGACCTATGAGACT 59.434 47.826 8.92 0.00 45.46 3.24
571 615 3.304794 GGCATACTCACGACCTATGAGAC 60.305 52.174 8.92 0.00 45.46 3.36
572 616 2.885266 GGCATACTCACGACCTATGAGA 59.115 50.000 8.92 0.00 45.46 3.27
574 618 1.961394 GGGCATACTCACGACCTATGA 59.039 52.381 0.00 0.00 0.00 2.15
575 619 1.335964 CGGGCATACTCACGACCTATG 60.336 57.143 0.00 0.00 0.00 2.23
581 625 0.821517 ATGAACGGGCATACTCACGA 59.178 50.000 0.00 0.00 0.00 4.35
582 626 2.394708 CTATGAACGGGCATACTCACG 58.605 52.381 0.00 0.00 0.00 4.35
586 630 1.802553 ACCCTATGAACGGGCATACT 58.197 50.000 0.00 0.00 46.04 2.12
593 637 0.326927 ACACCCAACCCTATGAACGG 59.673 55.000 0.00 0.00 0.00 4.44
599 643 0.850784 GCCCATACACCCAACCCTAT 59.149 55.000 0.00 0.00 0.00 2.57
603 647 0.850784 ATAGGCCCATACACCCAACC 59.149 55.000 0.00 0.00 0.00 3.77
605 649 5.354848 TCATATATAGGCCCATACACCCAA 58.645 41.667 0.00 0.00 0.00 4.12
606 650 4.966611 TCATATATAGGCCCATACACCCA 58.033 43.478 0.00 0.00 0.00 4.51
608 652 5.552870 CCTCATATATAGGCCCATACACC 57.447 47.826 0.00 0.00 0.00 4.16
618 662 2.196749 CGCAAGCGCCTCATATATAGG 58.803 52.381 2.29 0.00 37.17 2.57
619 663 2.881074 ACGCAAGCGCCTCATATATAG 58.119 47.619 15.09 0.00 44.19 1.31
620 664 3.313012 AACGCAAGCGCCTCATATATA 57.687 42.857 15.09 0.00 44.19 0.86
621 665 2.169832 AACGCAAGCGCCTCATATAT 57.830 45.000 15.09 0.00 44.19 0.86
622 666 1.597195 CAAACGCAAGCGCCTCATATA 59.403 47.619 15.09 0.00 44.19 0.86
623 667 0.378257 CAAACGCAAGCGCCTCATAT 59.622 50.000 15.09 0.00 44.19 1.78
624 668 0.953471 ACAAACGCAAGCGCCTCATA 60.953 50.000 15.09 0.00 44.19 2.15
625 669 0.953471 TACAAACGCAAGCGCCTCAT 60.953 50.000 15.09 0.00 44.19 2.90
626 670 1.595655 TACAAACGCAAGCGCCTCA 60.596 52.632 15.09 0.00 44.19 3.86
627 671 1.154469 GTACAAACGCAAGCGCCTC 60.154 57.895 15.09 0.00 44.19 4.70
628 672 2.613506 GGTACAAACGCAAGCGCCT 61.614 57.895 15.09 0.00 44.19 5.52
629 673 2.127003 GGTACAAACGCAAGCGCC 60.127 61.111 15.09 2.49 44.19 6.53
630 674 2.498887 CGGTACAAACGCAAGCGC 60.499 61.111 15.09 0.00 44.19 5.92
631 675 1.438059 CACGGTACAAACGCAAGCG 60.438 57.895 13.50 13.50 46.03 4.68
632 676 0.028374 AACACGGTACAAACGCAAGC 59.972 50.000 0.00 0.00 45.62 4.01
815 861 0.692756 GAGGAAGGGGGAGGGAGAAG 60.693 65.000 0.00 0.00 0.00 2.85
816 862 1.396594 GAGGAAGGGGGAGGGAGAA 59.603 63.158 0.00 0.00 0.00 2.87
817 863 2.647949 GGAGGAAGGGGGAGGGAGA 61.648 68.421 0.00 0.00 0.00 3.71
818 864 2.040359 GGAGGAAGGGGGAGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
819 865 2.543637 AGGAGGAAGGGGGAGGGA 60.544 66.667 0.00 0.00 0.00 4.20
820 866 2.040359 GAGGAGGAAGGGGGAGGG 60.040 72.222 0.00 0.00 0.00 4.30
821 867 1.304936 TAGGAGGAGGAAGGGGGAGG 61.305 65.000 0.00 0.00 0.00 4.30
822 868 0.871024 ATAGGAGGAGGAAGGGGGAG 59.129 60.000 0.00 0.00 0.00 4.30
823 869 0.868186 GATAGGAGGAGGAAGGGGGA 59.132 60.000 0.00 0.00 0.00 4.81
824 870 0.871024 AGATAGGAGGAGGAAGGGGG 59.129 60.000 0.00 0.00 0.00 5.40
825 871 2.022718 CAGATAGGAGGAGGAAGGGG 57.977 60.000 0.00 0.00 0.00 4.79
826 872 1.347062 GCAGATAGGAGGAGGAAGGG 58.653 60.000 0.00 0.00 0.00 3.95
827 873 2.094100 TGCAGATAGGAGGAGGAAGG 57.906 55.000 0.00 0.00 0.00 3.46
828 874 4.504689 GGATTTGCAGATAGGAGGAGGAAG 60.505 50.000 0.00 0.00 0.00 3.46
829 875 3.392616 GGATTTGCAGATAGGAGGAGGAA 59.607 47.826 0.00 0.00 0.00 3.36
830 876 2.975489 GGATTTGCAGATAGGAGGAGGA 59.025 50.000 0.00 0.00 0.00 3.71
831 877 2.978278 AGGATTTGCAGATAGGAGGAGG 59.022 50.000 0.00 0.00 0.00 4.30
832 878 3.007831 GGAGGATTTGCAGATAGGAGGAG 59.992 52.174 0.00 0.00 0.00 3.69
833 879 2.975489 GGAGGATTTGCAGATAGGAGGA 59.025 50.000 0.00 0.00 0.00 3.71
834 880 2.978278 AGGAGGATTTGCAGATAGGAGG 59.022 50.000 0.00 0.00 0.00 4.30
835 881 3.007831 GGAGGAGGATTTGCAGATAGGAG 59.992 52.174 0.00 0.00 0.00 3.69
836 882 2.975489 GGAGGAGGATTTGCAGATAGGA 59.025 50.000 0.00 0.00 0.00 2.94
837 883 2.039613 GGGAGGAGGATTTGCAGATAGG 59.960 54.545 0.00 0.00 0.00 2.57
925 1000 3.650950 TGGGGTCAGCTTGAGGGC 61.651 66.667 0.00 0.00 0.00 5.19
1086 1161 2.750637 ACGATGGCGAGGACGAGT 60.751 61.111 0.00 0.00 42.66 4.18
1318 1732 3.508840 GCATCGTTTCCGGCCCAG 61.509 66.667 0.00 0.00 33.95 4.45
1323 1743 1.534028 CAAATTCGCATCGTTTCCGG 58.466 50.000 0.00 0.00 33.95 5.14
1326 1746 0.907171 CCGCAAATTCGCATCGTTTC 59.093 50.000 0.00 0.00 0.00 2.78
1327 1747 1.070471 GCCGCAAATTCGCATCGTTT 61.070 50.000 0.00 0.00 0.00 3.60
1328 1748 1.514014 GCCGCAAATTCGCATCGTT 60.514 52.632 0.00 0.00 0.00 3.85
1329 1749 2.100216 GCCGCAAATTCGCATCGT 59.900 55.556 0.00 0.00 0.00 3.73
1330 1750 3.012888 CGCCGCAAATTCGCATCG 61.013 61.111 0.00 0.00 0.00 3.84
1331 1751 2.651863 CCGCCGCAAATTCGCATC 60.652 61.111 0.00 0.00 0.00 3.91
1334 1754 3.409959 AATCCCGCCGCAAATTCGC 62.410 57.895 0.00 0.00 0.00 4.70
1335 1755 1.586042 CAATCCCGCCGCAAATTCG 60.586 57.895 0.00 0.00 0.00 3.34
1336 1756 1.226945 CCAATCCCGCCGCAAATTC 60.227 57.895 0.00 0.00 0.00 2.17
1337 1757 2.720134 CCCAATCCCGCCGCAAATT 61.720 57.895 0.00 0.00 0.00 1.82
1338 1758 3.146913 CCCAATCCCGCCGCAAAT 61.147 61.111 0.00 0.00 0.00 2.32
1339 1759 4.352607 TCCCAATCCCGCCGCAAA 62.353 61.111 0.00 0.00 0.00 3.68
1356 1776 5.467705 AGATTTTAACAGCTAACGACGACT 58.532 37.500 0.00 0.00 0.00 4.18
1360 1780 6.237313 ACCAAGATTTTAACAGCTAACGAC 57.763 37.500 0.00 0.00 0.00 4.34
1361 1781 6.708949 AGAACCAAGATTTTAACAGCTAACGA 59.291 34.615 0.00 0.00 0.00 3.85
1362 1782 6.899114 AGAACCAAGATTTTAACAGCTAACG 58.101 36.000 0.00 0.00 0.00 3.18
1374 1794 6.469782 TTGCTTTCTGAAGAACCAAGATTT 57.530 33.333 0.00 0.00 34.71 2.17
1404 1824 3.977427 TCGATCGATTTCACCCATGTAG 58.023 45.455 15.15 0.00 0.00 2.74
1419 1839 2.135933 GTAGCTCCCCAAAATCGATCG 58.864 52.381 9.36 9.36 0.00 3.69
1420 1840 2.135933 CGTAGCTCCCCAAAATCGATC 58.864 52.381 0.00 0.00 0.00 3.69
1421 1841 1.760613 TCGTAGCTCCCCAAAATCGAT 59.239 47.619 0.00 0.00 0.00 3.59
1424 1844 2.919228 ACATCGTAGCTCCCCAAAATC 58.081 47.619 0.00 0.00 0.00 2.17
1481 1901 3.667087 TGCTAAAAGGCAGCACGG 58.333 55.556 0.00 0.00 43.90 4.94
1543 1968 3.717400 TCCTGAAGAACTAGCATAGCG 57.283 47.619 0.00 0.00 44.39 4.26
1579 2004 8.674263 ACCAAACATTGATTTCTGCAAATTAA 57.326 26.923 0.00 0.00 33.37 1.40
1580 2005 9.941325 ATACCAAACATTGATTTCTGCAAATTA 57.059 25.926 0.00 0.00 31.94 1.40
1583 2008 6.147492 GCATACCAAACATTGATTTCTGCAAA 59.853 34.615 0.00 0.00 0.00 3.68
1584 2009 5.638657 GCATACCAAACATTGATTTCTGCAA 59.361 36.000 0.00 0.00 0.00 4.08
1655 2086 3.797865 GCATCAGCAACCCAAGAATATGC 60.798 47.826 0.00 0.00 41.58 3.14
1685 2116 0.035152 TGTCCCACAAGGCAGCATAG 60.035 55.000 0.00 0.00 34.51 2.23
1718 2149 7.647907 TGTTAAGAAGAAACTAACATCGGAC 57.352 36.000 0.00 0.00 0.00 4.79
1722 2153 9.899226 AGCAAATGTTAAGAAGAAACTAACATC 57.101 29.630 7.04 0.00 39.54 3.06
1765 2196 4.122776 CCTGCAACTAGCTACATACCAAG 58.877 47.826 0.00 0.00 45.94 3.61
1878 2399 5.693961 TCAGCCCAATATAGCATCTTTTCA 58.306 37.500 0.00 0.00 0.00 2.69
1931 2452 1.337703 GCAGTTCATGTTGTGGCTCAA 59.662 47.619 0.00 0.00 0.00 3.02
1968 2489 2.020694 GCCACTAGCATTCACAGCCAT 61.021 52.381 0.00 0.00 42.97 4.40
2007 2528 4.648626 AGCACACGCAGGCCATGT 62.649 61.111 5.01 0.00 42.27 3.21
2012 2533 1.658409 GACAAAAGCACACGCAGGC 60.658 57.895 0.00 0.00 42.27 4.85
2047 2576 4.553351 GCAAGCTGCAAATTCAAAAGAACC 60.553 41.667 1.02 0.00 44.26 3.62
2101 2631 0.320771 CAGAACCAGGGTCGGTGAAG 60.321 60.000 0.00 0.00 39.95 3.02
2200 2730 3.614092 CATAGACTGCTGTGGGTTCATT 58.386 45.455 0.00 0.00 30.40 2.57
2390 2921 4.102681 ACAATTTAGGCCTAGATAAGCGGT 59.897 41.667 15.83 7.27 0.00 5.68
2402 2933 4.039852 TCCACCTGAAAAACAATTTAGGCC 59.960 41.667 0.00 0.00 39.12 5.19
2446 2977 3.071874 ACAACCCATACACAGTGATGG 57.928 47.619 18.35 18.35 42.06 3.51
2676 3367 6.920210 CACAGGAAAAAGGAAATCAGTTTCTC 59.080 38.462 1.50 0.00 42.66 2.87
2871 3569 6.381420 ACCCCTGATGTCTAATATCTATTCGG 59.619 42.308 0.00 0.00 0.00 4.30
2888 3587 1.474330 GAAAATGCCGAACCCCTGAT 58.526 50.000 0.00 0.00 0.00 2.90
3050 3750 2.106566 AGTACTGACAGGAGCCATGAG 58.893 52.381 7.51 0.00 0.00 2.90
3095 3795 7.716998 GGGGACTAATTATGCACAGATATATGG 59.283 40.741 1.85 0.00 0.00 2.74
3096 3796 8.489489 AGGGGACTAATTATGCACAGATATATG 58.511 37.037 0.00 0.00 40.61 1.78
3112 3812 1.561542 CTGGCTGACAAGGGGACTAAT 59.438 52.381 0.00 0.00 42.68 1.73
3217 3918 9.793259 TTTGACTAGTGGAAGAATCATTTTACT 57.207 29.630 0.00 0.00 0.00 2.24
3271 4099 2.295909 CGAGAGCCAAAACCAATTTCCA 59.704 45.455 0.00 0.00 0.00 3.53
3272 4100 2.556622 TCGAGAGCCAAAACCAATTTCC 59.443 45.455 0.00 0.00 0.00 3.13
3325 4153 3.062763 CCAACACGGATCTCTATGCATC 58.937 50.000 0.19 0.00 36.56 3.91
3459 4287 1.515521 GGAACAAGAGGCCACAACCG 61.516 60.000 5.01 0.00 33.69 4.44
3463 4291 1.070786 GACGGAACAAGAGGCCACA 59.929 57.895 5.01 0.00 0.00 4.17
3606 4434 7.064847 TGACTTAATTACAGTGACAAACAACGT 59.935 33.333 0.00 0.00 0.00 3.99
3631 4459 2.039418 TGGTCCCGGAGTGATTCTATG 58.961 52.381 0.73 0.00 0.00 2.23
3642 4470 1.971505 GACTGCATGATGGTCCCGGA 61.972 60.000 0.73 0.00 0.00 5.14
3645 4473 0.035152 TGTGACTGCATGATGGTCCC 60.035 55.000 0.00 0.00 0.00 4.46
3799 4627 2.439507 AGTTTTGAGCTCCTTCAGTCCA 59.560 45.455 12.15 0.00 0.00 4.02
4034 4867 8.763049 ATTATGTATACGATGTCCATGAAGTG 57.237 34.615 0.00 0.00 0.00 3.16
4163 4996 7.582667 AGCAGTTGACAAAAAGGTAATAGTT 57.417 32.000 0.00 0.00 0.00 2.24
4190 5023 2.027561 AGTCGACGGGGAAATTGATTCA 60.028 45.455 10.46 0.00 39.98 2.57
4210 5043 3.260483 GACAGAGCATCCGCGCAG 61.260 66.667 8.75 0.00 45.49 5.18
4226 5059 3.371097 GATTCAGGAGCGGTGCCGA 62.371 63.158 15.45 0.00 42.83 5.54
4232 5065 0.674581 TTGCTGTGATTCAGGAGCGG 60.675 55.000 11.24 0.00 44.75 5.52
4262 5095 1.763120 AGGTCAATGAGCTGTGGCA 59.237 52.632 14.70 0.00 39.04 4.92
4279 5112 4.037208 GGTATGTCATGGAGGAAAATGCAG 59.963 45.833 0.00 0.00 0.00 4.41
4285 5118 2.193127 ACGGGTATGTCATGGAGGAAA 58.807 47.619 0.00 0.00 0.00 3.13
4377 5210 1.598130 AGCTCGTCAAGGTTGCCAC 60.598 57.895 0.00 0.00 29.11 5.01
4397 5244 4.478206 CTTGGTTAGGAGATTCTGCAGA 57.522 45.455 13.74 13.74 0.00 4.26
4448 5295 3.701040 ACAAGGCTATTTGCGAATGGATT 59.299 39.130 13.89 4.93 44.05 3.01
4538 5385 1.980772 GCCTTGCATCCAGGTTGCT 60.981 57.895 21.00 0.00 40.77 3.91
4547 5394 1.313812 AAGCTCAGCTGCCTTGCATC 61.314 55.000 9.47 0.00 39.62 3.91
4628 5475 1.673033 CGGCAGTTTTCAGTCGATCCT 60.673 52.381 0.00 0.00 36.56 3.24
4657 5504 1.945580 AGAGACAGGGGAGGAGTTTC 58.054 55.000 0.00 0.00 0.00 2.78
4687 5534 6.929606 AGATATGGACGCAAAGAACTATAACC 59.070 38.462 0.00 0.00 0.00 2.85
4713 5560 3.439857 TGCTGAAGAGGCCAAAAGTAT 57.560 42.857 5.01 0.00 0.00 2.12
4725 5572 5.984926 GTGGAAACAATTGAAATGCTGAAGA 59.015 36.000 13.59 0.00 46.06 2.87
4758 5605 0.319813 AGCAATTTGCCGACCAAAGC 60.320 50.000 17.51 6.17 46.52 3.51
4787 5634 3.496515 CCAACCAATTTGCTGACCCAAAT 60.497 43.478 0.00 0.00 44.81 2.32
4876 5723 3.021695 GGTTTAGTCATAAAGGTGGGCC 58.978 50.000 0.00 0.00 31.56 5.80
4984 5831 7.693951 GCATTTATTCAGTGTGACATACAGAAC 59.306 37.037 11.42 0.00 40.69 3.01
5086 5933 9.378551 TGAAAGTAACAACTACTAGCATAATGG 57.621 33.333 0.00 0.00 40.14 3.16
5189 6036 6.140303 ACTGTATCATCATTTGCACAATCC 57.860 37.500 0.00 0.00 0.00 3.01
5222 6069 8.276252 TGCTCAAATGGTCCTAAATTAACTAC 57.724 34.615 0.00 0.00 0.00 2.73
5333 6184 6.368779 ACAAACTGAAGGCCTACTATACAA 57.631 37.500 5.16 0.00 0.00 2.41
5334 6185 5.105064 GGACAAACTGAAGGCCTACTATACA 60.105 44.000 5.16 0.00 0.00 2.29
5335 6186 5.128991 AGGACAAACTGAAGGCCTACTATAC 59.871 44.000 5.16 0.00 0.00 1.47
5336 6187 5.278061 AGGACAAACTGAAGGCCTACTATA 58.722 41.667 5.16 0.00 0.00 1.31
5337 6188 4.104831 AGGACAAACTGAAGGCCTACTAT 58.895 43.478 5.16 0.00 0.00 2.12
5681 6655 3.983044 AAAGAGAGGGTAACAAGCGAT 57.017 42.857 0.00 0.00 39.74 4.58
5749 6723 0.595095 GGTTGCAAGTGCTGAAGGAG 59.405 55.000 0.00 0.00 42.66 3.69
5800 6774 9.920826 GAAAGCATACTTTTCTTTTCCAAAAAG 57.079 29.630 5.94 5.94 46.20 2.27
5859 6833 5.628193 CAGATTCAACACTGCAAGAAACATC 59.372 40.000 0.00 0.00 37.43 3.06
5860 6834 5.508489 CCAGATTCAACACTGCAAGAAACAT 60.508 40.000 0.00 0.00 37.43 2.71
5861 6835 4.202040 CCAGATTCAACACTGCAAGAAACA 60.202 41.667 0.00 0.00 37.43 2.83
5862 6836 4.293415 CCAGATTCAACACTGCAAGAAAC 58.707 43.478 0.00 0.00 37.43 2.78
6012 6988 9.097257 CCTGAACAACAAAGTAACAAATTGATT 57.903 29.630 0.00 0.00 0.00 2.57
6366 7344 8.868916 GCCATTACAAACCTTGTTATAACAATG 58.131 33.333 26.87 25.24 46.71 2.82
6367 7345 8.589338 TGCCATTACAAACCTTGTTATAACAAT 58.411 29.630 26.87 15.75 46.71 2.71
6376 7354 5.047377 CAGGTTATGCCATTACAAACCTTGT 60.047 40.000 6.84 0.00 45.93 3.16
6386 7364 7.418827 CCATGGAAATTTCAGGTTATGCCATTA 60.419 37.037 19.49 0.00 40.61 1.90
6426 7404 4.000988 CCGCAGTTACCAAAGTTCTATGT 58.999 43.478 0.00 0.00 0.00 2.29
6446 7424 5.355350 ACTTCCATTGCTTAATCTTCTTCCG 59.645 40.000 0.00 0.00 0.00 4.30
6512 7492 6.596621 TGGAATATCCCAACATGATCGTTTA 58.403 36.000 0.00 0.00 35.03 2.01
6546 7526 8.621286 ACTCAAGGTTTATGAAACTACAACAAG 58.379 33.333 2.39 0.00 41.14 3.16
6548 7528 7.554835 ACACTCAAGGTTTATGAAACTACAACA 59.445 33.333 2.39 0.00 41.14 3.33
6602 7582 7.222872 TGGTATGTTGCACATATGTATCATGA 58.777 34.615 8.32 0.00 42.39 3.07
6678 7659 3.599343 GCATCACAGTCCATGTACAGAA 58.401 45.455 0.33 0.00 41.41 3.02
6732 7713 2.617308 GGACATGATCAAGGACATGCAG 59.383 50.000 0.00 0.00 45.03 4.41
6760 7741 6.005823 TCATGTTTCAGATGTTGAAGGTCAT 58.994 36.000 0.00 0.00 46.01 3.06
6793 7774 5.349543 GCCAGCAAGAAGGAAAATAACAATG 59.650 40.000 0.00 0.00 0.00 2.82
6797 7778 3.258123 TGGCCAGCAAGAAGGAAAATAAC 59.742 43.478 0.00 0.00 0.00 1.89
6825 7806 1.266989 GTTTACCAAGTCTGCTGGTGC 59.733 52.381 6.49 0.00 37.16 5.01
6826 7807 2.571212 TGTTTACCAAGTCTGCTGGTG 58.429 47.619 6.49 0.00 37.16 4.17
6828 7809 2.032030 CGTTGTTTACCAAGTCTGCTGG 60.032 50.000 0.00 0.00 32.51 4.85
6829 7810 2.869801 TCGTTGTTTACCAAGTCTGCTG 59.130 45.455 0.00 0.00 32.51 4.41
6830 7811 2.870411 GTCGTTGTTTACCAAGTCTGCT 59.130 45.455 0.00 0.00 32.51 4.24
6831 7812 2.610374 TGTCGTTGTTTACCAAGTCTGC 59.390 45.455 0.00 0.00 32.51 4.26
6839 7820 4.514066 ACTTCAGGAATGTCGTTGTTTACC 59.486 41.667 0.00 0.00 0.00 2.85
6914 7933 4.851010 ACCAATACTTTTTGTCGTTTCCG 58.149 39.130 0.00 0.00 0.00 4.30
6965 7984 2.759973 AGAGCGGGCATCCTTCGA 60.760 61.111 0.00 0.00 0.00 3.71
7019 8038 1.139256 TGTCGTTACAACTCTTGCCCA 59.861 47.619 0.00 0.00 30.91 5.36
7122 8150 0.541392 TGCCATACCATCGACAGCTT 59.459 50.000 0.00 0.00 0.00 3.74
7141 8169 9.461312 TGTATACAGTATGCCTGATTTTCTTTT 57.539 29.630 0.08 0.00 44.49 2.27
7151 8179 7.419134 ACAGCTGGTGTATACAGTATGCCTG 62.419 48.000 19.93 8.64 41.87 4.85
7314 8343 9.865321 CATCAACAAATGGTATCTTTCTGAATT 57.135 29.630 0.00 0.00 0.00 2.17
7358 8387 3.808728 ACATATCCACAAATCCACCGAG 58.191 45.455 0.00 0.00 0.00 4.63
7449 8482 0.033796 AGGGGTGCAAGATGGACATG 60.034 55.000 4.42 0.00 40.73 3.21
7702 8860 1.717645 CGTAGCTCACGTGGTAAACAC 59.282 52.381 17.00 5.86 45.82 3.32
7783 8943 1.202758 TCCACACCTAAACCTGCACAG 60.203 52.381 0.00 0.00 0.00 3.66
7784 8944 0.840617 TCCACACCTAAACCTGCACA 59.159 50.000 0.00 0.00 0.00 4.57
7785 8945 1.975660 TTCCACACCTAAACCTGCAC 58.024 50.000 0.00 0.00 0.00 4.57
7786 8946 2.107378 TCATTCCACACCTAAACCTGCA 59.893 45.455 0.00 0.00 0.00 4.41
7787 8947 2.790433 TCATTCCACACCTAAACCTGC 58.210 47.619 0.00 0.00 0.00 4.85
7788 8948 5.243730 ACATTTCATTCCACACCTAAACCTG 59.756 40.000 0.00 0.00 0.00 4.00
7789 8949 5.393866 ACATTTCATTCCACACCTAAACCT 58.606 37.500 0.00 0.00 0.00 3.50
7790 8950 5.722021 ACATTTCATTCCACACCTAAACC 57.278 39.130 0.00 0.00 0.00 3.27
7791 8951 6.156519 GGAACATTTCATTCCACACCTAAAC 58.843 40.000 0.00 0.00 44.42 2.01
7792 8952 6.339587 GGAACATTTCATTCCACACCTAAA 57.660 37.500 0.00 0.00 44.42 1.85
7793 8953 5.975693 GGAACATTTCATTCCACACCTAA 57.024 39.130 0.00 0.00 44.42 2.69
7801 8961 5.467035 TTGAACCTGGAACATTTCATTCC 57.533 39.130 0.00 0.00 45.13 3.01
7802 8962 7.784633 TTTTTGAACCTGGAACATTTCATTC 57.215 32.000 0.00 0.00 39.13 2.67
7803 8963 9.844257 TTATTTTTGAACCTGGAACATTTCATT 57.156 25.926 0.00 0.00 39.13 2.57
7804 8964 9.844257 TTTATTTTTGAACCTGGAACATTTCAT 57.156 25.926 0.00 0.00 39.13 2.57
7805 8965 9.844257 ATTTATTTTTGAACCTGGAACATTTCA 57.156 25.926 0.00 0.00 38.12 2.69
7893 9646 3.172106 TCCACCCAAGCAACCCGA 61.172 61.111 0.00 0.00 0.00 5.14
7894 9647 2.672996 CTCCACCCAAGCAACCCG 60.673 66.667 0.00 0.00 0.00 5.28
7945 10126 1.072648 CCACCCTTTCGTCAAACCCTA 59.927 52.381 0.00 0.00 0.00 3.53
7946 10127 0.179001 CCACCCTTTCGTCAAACCCT 60.179 55.000 0.00 0.00 0.00 4.34
7947 10128 1.176619 CCCACCCTTTCGTCAAACCC 61.177 60.000 0.00 0.00 0.00 4.11
7948 10129 0.179012 TCCCACCCTTTCGTCAAACC 60.179 55.000 0.00 0.00 0.00 3.27
7949 10130 1.235724 CTCCCACCCTTTCGTCAAAC 58.764 55.000 0.00 0.00 0.00 2.93
7950 10131 0.841289 ACTCCCACCCTTTCGTCAAA 59.159 50.000 0.00 0.00 0.00 2.69
7951 10132 1.719529 TACTCCCACCCTTTCGTCAA 58.280 50.000 0.00 0.00 0.00 3.18
7952 10133 1.829222 GATACTCCCACCCTTTCGTCA 59.171 52.381 0.00 0.00 0.00 4.35
7953 10134 1.202382 CGATACTCCCACCCTTTCGTC 60.202 57.143 0.00 0.00 0.00 4.20
7954 10135 0.822164 CGATACTCCCACCCTTTCGT 59.178 55.000 0.00 0.00 0.00 3.85
7955 10136 0.529992 GCGATACTCCCACCCTTTCG 60.530 60.000 0.00 0.00 0.00 3.46
7956 10137 0.539986 TGCGATACTCCCACCCTTTC 59.460 55.000 0.00 0.00 0.00 2.62
7957 10138 1.213296 ATGCGATACTCCCACCCTTT 58.787 50.000 0.00 0.00 0.00 3.11
7958 10139 2.097110 TATGCGATACTCCCACCCTT 57.903 50.000 0.00 0.00 0.00 3.95
7960 10141 1.899814 TGATATGCGATACTCCCACCC 59.100 52.381 0.00 0.00 0.00 4.61
7962 10143 3.119459 ACGATGATATGCGATACTCCCAC 60.119 47.826 0.00 0.00 0.00 4.61
7963 10144 3.089284 ACGATGATATGCGATACTCCCA 58.911 45.455 0.00 0.00 0.00 4.37
7964 10145 3.439293 CACGATGATATGCGATACTCCC 58.561 50.000 0.00 0.00 0.00 4.30
7965 10146 2.854777 GCACGATGATATGCGATACTCC 59.145 50.000 0.00 0.00 30.97 3.85
7966 10147 3.545475 CAGCACGATGATATGCGATACTC 59.455 47.826 0.00 0.00 46.74 2.59
7968 10149 2.028523 GCAGCACGATGATATGCGATAC 59.971 50.000 0.00 0.00 46.74 2.24
7969 10150 2.262211 GCAGCACGATGATATGCGATA 58.738 47.619 0.00 0.00 46.74 2.92
7970 10151 1.073964 GCAGCACGATGATATGCGAT 58.926 50.000 0.00 0.00 46.74 4.58
7986 10167 3.286751 CACCACACCCAACCGCAG 61.287 66.667 0.00 0.00 0.00 5.18
7987 10168 4.116585 ACACCACACCCAACCGCA 62.117 61.111 0.00 0.00 0.00 5.69
7988 10169 3.284449 GACACCACACCCAACCGC 61.284 66.667 0.00 0.00 0.00 5.68
7989 10170 2.593436 GGACACCACACCCAACCG 60.593 66.667 0.00 0.00 0.00 4.44
7991 10172 2.193536 GCAGGACACCACACCCAAC 61.194 63.158 0.00 0.00 0.00 3.77
7992 10173 2.194597 GCAGGACACCACACCCAA 59.805 61.111 0.00 0.00 0.00 4.12
7993 10174 4.248842 CGCAGGACACCACACCCA 62.249 66.667 0.00 0.00 0.00 4.51
7996 10177 1.079127 ATAGCGCAGGACACCACAC 60.079 57.895 11.47 0.00 0.00 3.82
7998 10179 1.815421 CCATAGCGCAGGACACCAC 60.815 63.158 11.47 0.00 0.00 4.16
7999 10180 2.290287 ACCATAGCGCAGGACACCA 61.290 57.895 18.62 0.00 0.00 4.17
8000 10181 1.815421 CACCATAGCGCAGGACACC 60.815 63.158 18.62 0.00 0.00 4.16
8001 10182 0.673644 AACACCATAGCGCAGGACAC 60.674 55.000 18.62 0.00 0.00 3.67
8002 10183 0.673333 CAACACCATAGCGCAGGACA 60.673 55.000 18.62 0.00 0.00 4.02
8003 10184 1.369091 CCAACACCATAGCGCAGGAC 61.369 60.000 18.62 0.00 0.00 3.85
8004 10185 1.078497 CCAACACCATAGCGCAGGA 60.078 57.895 18.62 0.00 0.00 3.86
8005 10186 2.114670 CCCAACACCATAGCGCAGG 61.115 63.158 11.47 11.43 0.00 4.85
8008 10189 3.518068 GCCCCAACACCATAGCGC 61.518 66.667 0.00 0.00 0.00 5.92
8009 10190 1.819632 GAGCCCCAACACCATAGCG 60.820 63.158 0.00 0.00 0.00 4.26
8010 10191 1.819632 CGAGCCCCAACACCATAGC 60.820 63.158 0.00 0.00 0.00 2.97
8011 10192 1.153168 CCGAGCCCCAACACCATAG 60.153 63.158 0.00 0.00 0.00 2.23
8012 10193 2.675242 CCCGAGCCCCAACACCATA 61.675 63.158 0.00 0.00 0.00 2.74
8013 10194 4.047125 CCCGAGCCCCAACACCAT 62.047 66.667 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.