Multiple sequence alignment - TraesCS2A01G056400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G056400 chr2A 100.000 3851 0 0 1 3851 23969717 23973567 0.000000e+00 7112.0
1 TraesCS2A01G056400 chr2A 80.969 1135 173 24 1869 2965 23960065 23961194 0.000000e+00 859.0
2 TraesCS2A01G056400 chr2A 86.677 668 72 15 1039 1699 23958840 23959497 0.000000e+00 725.0
3 TraesCS2A01G056400 chr2A 83.438 640 93 7 1066 1694 22573550 22572913 1.990000e-162 582.0
4 TraesCS2A01G056400 chr2A 96.930 228 7 0 3624 3851 23899625 23899852 2.170000e-102 383.0
5 TraesCS2A01G056400 chr2B 88.422 1831 137 27 1832 3609 35284133 35285941 0.000000e+00 2137.0
6 TraesCS2A01G056400 chr2B 86.947 1831 150 30 1833 3609 35312540 35314335 0.000000e+00 1975.0
7 TraesCS2A01G056400 chr2B 89.542 1157 84 13 1826 2961 35276716 35277856 0.000000e+00 1432.0
8 TraesCS2A01G056400 chr2B 87.774 957 90 15 2034 2965 35309193 35310147 0.000000e+00 1094.0
9 TraesCS2A01G056400 chr2B 83.077 1040 140 22 1827 2835 35135530 35136564 0.000000e+00 913.0
10 TraesCS2A01G056400 chr2B 89.016 701 47 7 827 1527 35274603 35275273 0.000000e+00 841.0
11 TraesCS2A01G056400 chr2B 87.856 527 49 9 134 646 35274080 35274605 4.260000e-169 604.0
12 TraesCS2A01G056400 chr2B 87.879 330 22 9 1509 1823 35276348 35276674 4.700000e-99 372.0
13 TraesCS2A01G056400 chr2B 89.630 135 13 1 1 134 35141179 35141313 1.840000e-38 171.0
14 TraesCS2A01G056400 chr2B 84.967 153 19 4 3628 3778 743326493 743326343 6.660000e-33 152.0
15 TraesCS2A01G056400 chr2B 86.667 75 8 2 520 593 35134445 35134518 8.870000e-12 82.4
16 TraesCS2A01G056400 chr2D 87.372 1853 161 29 1810 3609 22156081 22157913 0.000000e+00 2058.0
17 TraesCS2A01G056400 chr2D 91.271 1306 76 16 1785 3059 22145248 22146546 0.000000e+00 1746.0
18 TraesCS2A01G056400 chr2D 92.121 863 50 10 929 1780 22144231 22145086 0.000000e+00 1201.0
19 TraesCS2A01G056400 chr2D 80.898 1136 172 24 1869 2965 22120747 22121876 0.000000e+00 854.0
20 TraesCS2A01G056400 chr2D 87.406 667 66 12 1061 1716 22155329 22155988 0.000000e+00 750.0
21 TraesCS2A01G056400 chr2D 86.099 669 74 12 1039 1699 22119416 22120073 0.000000e+00 702.0
22 TraesCS2A01G056400 chr2D 82.229 664 104 11 1039 1695 21555902 21555246 9.340000e-156 560.0
23 TraesCS2A01G056400 chr2D 81.129 620 105 9 1084 1694 21057672 21057056 1.610000e-133 486.0
24 TraesCS2A01G056400 chr2D 84.934 458 35 15 3135 3565 22146810 22147260 2.130000e-117 433.0
25 TraesCS2A01G056400 chr2D 94.565 92 3 2 520 609 22143887 22143978 1.440000e-29 141.0
26 TraesCS2A01G056400 chr2D 93.671 79 5 0 3628 3706 161366473 161366395 6.760000e-23 119.0
27 TraesCS2A01G056400 chr2D 79.231 130 16 2 670 799 7651240 7651358 3.190000e-11 80.5
28 TraesCS2A01G056400 chr2D 96.875 32 1 0 477 508 22143824 22143855 2.000000e-03 54.7
29 TraesCS2A01G056400 chr5D 86.637 666 63 20 1042 1697 75913145 75912496 0.000000e+00 713.0
30 TraesCS2A01G056400 chr5D 92.405 79 6 0 3628 3706 233034169 233034091 3.140000e-21 113.0
31 TraesCS2A01G056400 chr6D 86.186 485 45 13 1103 1576 29985847 29985374 4.440000e-139 505.0
32 TraesCS2A01G056400 chr6D 89.683 126 12 1 3628 3752 414117858 414117733 3.980000e-35 159.0
33 TraesCS2A01G056400 chr7A 96.429 224 8 0 3628 3851 697407919 697407696 1.690000e-98 370.0
34 TraesCS2A01G056400 chr7A 96.067 178 7 0 3674 3851 3814108 3813931 1.350000e-74 291.0
35 TraesCS2A01G056400 chr6A 95.154 227 11 0 3625 3851 614705803 614706029 3.660000e-95 359.0
36 TraesCS2A01G056400 chr5B 85.621 306 29 12 1042 1339 84623645 84623347 1.340000e-79 307.0
37 TraesCS2A01G056400 chr4B 87.578 161 19 1 3628 3787 163838588 163838748 6.570000e-43 185.0
38 TraesCS2A01G056400 chr4B 85.714 70 9 1 3710 3778 625999745 625999814 5.340000e-09 73.1
39 TraesCS2A01G056400 chr1A 86.992 123 8 5 3627 3745 281893049 281893167 8.680000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G056400 chr2A 23969717 23973567 3850 False 7112.00 7112 100.00000 1 3851 1 chr2A.!!$F2 3850
1 TraesCS2A01G056400 chr2A 23958840 23961194 2354 False 792.00 859 83.82300 1039 2965 2 chr2A.!!$F3 1926
2 TraesCS2A01G056400 chr2A 22572913 22573550 637 True 582.00 582 83.43800 1066 1694 1 chr2A.!!$R1 628
3 TraesCS2A01G056400 chr2B 35284133 35285941 1808 False 2137.00 2137 88.42200 1832 3609 1 chr2B.!!$F2 1777
4 TraesCS2A01G056400 chr2B 35309193 35314335 5142 False 1534.50 1975 87.36050 1833 3609 2 chr2B.!!$F5 1776
5 TraesCS2A01G056400 chr2B 35274080 35277856 3776 False 812.25 1432 88.57325 134 2961 4 chr2B.!!$F4 2827
6 TraesCS2A01G056400 chr2B 35134445 35136564 2119 False 497.70 913 84.87200 520 2835 2 chr2B.!!$F3 2315
7 TraesCS2A01G056400 chr2D 22155329 22157913 2584 False 1404.00 2058 87.38900 1061 3609 2 chr2D.!!$F4 2548
8 TraesCS2A01G056400 chr2D 22119416 22121876 2460 False 778.00 854 83.49850 1039 2965 2 chr2D.!!$F2 1926
9 TraesCS2A01G056400 chr2D 22143824 22147260 3436 False 715.14 1746 91.95320 477 3565 5 chr2D.!!$F3 3088
10 TraesCS2A01G056400 chr2D 21555246 21555902 656 True 560.00 560 82.22900 1039 1695 1 chr2D.!!$R2 656
11 TraesCS2A01G056400 chr2D 21057056 21057672 616 True 486.00 486 81.12900 1084 1694 1 chr2D.!!$R1 610
12 TraesCS2A01G056400 chr5D 75912496 75913145 649 True 713.00 713 86.63700 1042 1697 1 chr5D.!!$R1 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 829 0.253894 AGCCCGCTATAACCCGTTTT 59.746 50.0 0.00 0.00 0.00 2.43 F
1029 1199 0.170561 CAGACCAAGCAGAAGCATGC 59.829 55.0 10.51 10.51 46.88 4.06 F
2173 4294 0.458543 ACGAGGCACACAAGCTATCG 60.459 55.0 10.74 10.74 43.85 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2575 4721 0.343018 TCCTCTCCCCATCCATGACA 59.657 55.000 0.0 0.0 0.0 3.58 R
2611 4757 5.664294 TTTGCATCCACTTCATAGCATTT 57.336 34.783 0.0 0.0 0.0 2.32 R
3714 6115 0.035458 CAGGGAGCCTTCGTTGTTCT 59.965 55.000 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.868277 AAGATGACAAGAAACAATTGTTAAACA 57.132 25.926 23.53 16.62 40.86 2.83
31 32 9.645059 TGACAAGAAACAATTGTTAAACATTGA 57.355 25.926 23.53 7.43 40.86 2.57
48 49 7.539034 AACATTGAGTTTATAGGCCAACTTT 57.461 32.000 5.01 0.00 37.03 2.66
49 50 6.924111 ACATTGAGTTTATAGGCCAACTTTG 58.076 36.000 5.01 7.88 33.22 2.77
50 51 6.493458 ACATTGAGTTTATAGGCCAACTTTGT 59.507 34.615 5.01 8.47 33.22 2.83
51 52 6.569179 TTGAGTTTATAGGCCAACTTTGTC 57.431 37.500 5.01 0.00 33.22 3.18
52 53 5.876357 TGAGTTTATAGGCCAACTTTGTCT 58.124 37.500 5.01 0.00 33.22 3.41
53 54 6.303839 TGAGTTTATAGGCCAACTTTGTCTT 58.696 36.000 5.01 0.00 33.22 3.01
54 55 6.775629 TGAGTTTATAGGCCAACTTTGTCTTT 59.224 34.615 5.01 0.00 33.22 2.52
55 56 7.286775 TGAGTTTATAGGCCAACTTTGTCTTTT 59.713 33.333 5.01 0.00 33.22 2.27
56 57 8.018537 AGTTTATAGGCCAACTTTGTCTTTTT 57.981 30.769 5.01 0.00 28.27 1.94
57 58 9.138596 AGTTTATAGGCCAACTTTGTCTTTTTA 57.861 29.630 5.01 0.00 28.27 1.52
58 59 9.188588 GTTTATAGGCCAACTTTGTCTTTTTAC 57.811 33.333 5.01 0.00 0.00 2.01
60 61 5.669164 AGGCCAACTTTGTCTTTTTACAA 57.331 34.783 5.01 0.00 37.58 2.41
61 62 5.416083 AGGCCAACTTTGTCTTTTTACAAC 58.584 37.500 5.01 0.00 39.02 3.32
62 63 4.569162 GGCCAACTTTGTCTTTTTACAACC 59.431 41.667 0.00 0.00 39.02 3.77
63 64 5.416083 GCCAACTTTGTCTTTTTACAACCT 58.584 37.500 0.00 0.00 39.02 3.50
65 66 7.036829 GCCAACTTTGTCTTTTTACAACCTAA 58.963 34.615 0.00 0.00 39.02 2.69
66 67 7.709182 GCCAACTTTGTCTTTTTACAACCTAAT 59.291 33.333 0.00 0.00 39.02 1.73
73 74 9.810545 TTGTCTTTTTACAACCTAATTTGAAGG 57.189 29.630 0.00 0.00 40.20 3.46
81 82 9.629878 TTACAACCTAATTTGAAGGTAAGTTGA 57.370 29.630 0.00 0.00 46.85 3.18
83 84 6.819397 ACCTAATTTGAAGGTAAGTTGAGC 57.181 37.500 0.00 0.00 45.69 4.26
85 86 6.431234 ACCTAATTTGAAGGTAAGTTGAGCAG 59.569 38.462 0.00 0.00 45.69 4.24
86 87 6.655003 CCTAATTTGAAGGTAAGTTGAGCAGA 59.345 38.462 0.00 0.00 0.00 4.26
87 88 6.959639 AATTTGAAGGTAAGTTGAGCAGAA 57.040 33.333 0.00 0.00 0.00 3.02
88 89 6.959639 ATTTGAAGGTAAGTTGAGCAGAAA 57.040 33.333 0.00 0.00 0.00 2.52
89 90 6.959639 TTTGAAGGTAAGTTGAGCAGAAAT 57.040 33.333 0.00 0.00 0.00 2.17
90 91 8.635765 ATTTGAAGGTAAGTTGAGCAGAAATA 57.364 30.769 0.00 0.00 0.00 1.40
91 92 8.458573 TTTGAAGGTAAGTTGAGCAGAAATAA 57.541 30.769 0.00 0.00 0.00 1.40
92 93 8.635765 TTGAAGGTAAGTTGAGCAGAAATAAT 57.364 30.769 0.00 0.00 0.00 1.28
107 108 9.920946 AGCAGAAATAATAATTTAAGGTCTCCA 57.079 29.630 0.00 0.00 35.41 3.86
119 120 6.642733 TTAAGGTCTCCAAGATCATTTCCT 57.357 37.500 0.00 0.00 0.00 3.36
120 121 4.500499 AGGTCTCCAAGATCATTTCCTG 57.500 45.455 0.00 0.00 0.00 3.86
121 122 3.848975 AGGTCTCCAAGATCATTTCCTGT 59.151 43.478 0.00 0.00 0.00 4.00
122 123 5.032846 AGGTCTCCAAGATCATTTCCTGTA 58.967 41.667 0.00 0.00 0.00 2.74
124 125 5.104735 GGTCTCCAAGATCATTTCCTGTAGT 60.105 44.000 0.00 0.00 0.00 2.73
125 126 6.410540 GTCTCCAAGATCATTTCCTGTAGTT 58.589 40.000 0.00 0.00 0.00 2.24
126 127 7.364762 GGTCTCCAAGATCATTTCCTGTAGTTA 60.365 40.741 0.00 0.00 0.00 2.24
127 128 8.041323 GTCTCCAAGATCATTTCCTGTAGTTAA 58.959 37.037 0.00 0.00 0.00 2.01
128 129 8.772250 TCTCCAAGATCATTTCCTGTAGTTAAT 58.228 33.333 0.00 0.00 0.00 1.40
129 130 9.401058 CTCCAAGATCATTTCCTGTAGTTAATT 57.599 33.333 0.00 0.00 0.00 1.40
130 131 9.753674 TCCAAGATCATTTCCTGTAGTTAATTT 57.246 29.630 0.00 0.00 0.00 1.82
132 133 9.708222 CAAGATCATTTCCTGTAGTTAATTTCG 57.292 33.333 0.00 0.00 0.00 3.46
142 143 8.701895 TCCTGTAGTTAATTTCGAATAGGTCAT 58.298 33.333 0.00 0.00 0.00 3.06
173 174 9.788960 GGAATAATTTGTCACAGGAGAATAAAC 57.211 33.333 0.00 0.00 0.00 2.01
175 176 8.877864 ATAATTTGTCACAGGAGAATAAACCA 57.122 30.769 0.00 0.00 0.00 3.67
176 177 7.781324 AATTTGTCACAGGAGAATAAACCAT 57.219 32.000 0.00 0.00 0.00 3.55
178 179 6.817765 TTGTCACAGGAGAATAAACCATTC 57.182 37.500 0.00 0.00 43.02 2.67
179 180 5.875224 TGTCACAGGAGAATAAACCATTCA 58.125 37.500 0.31 0.00 44.81 2.57
180 181 6.484288 TGTCACAGGAGAATAAACCATTCAT 58.516 36.000 0.31 0.00 44.81 2.57
181 182 7.629157 TGTCACAGGAGAATAAACCATTCATA 58.371 34.615 0.31 0.00 44.81 2.15
199 200 7.690228 CATTCATAAAACAATTGAATGGCCTG 58.310 34.615 13.59 0.00 46.62 4.85
207 208 4.101430 ACAATTGAATGGCCTGAAAGTTGT 59.899 37.500 13.59 6.29 0.00 3.32
215 216 5.606348 TGGCCTGAAAGTTGTGTTAAAAT 57.394 34.783 3.32 0.00 0.00 1.82
217 218 6.045955 TGGCCTGAAAGTTGTGTTAAAATTC 58.954 36.000 3.32 0.00 0.00 2.17
221 223 6.142320 CCTGAAAGTTGTGTTAAAATTCGCTC 59.858 38.462 0.00 0.00 0.00 5.03
231 233 8.722394 TGTGTTAAAATTCGCTCATATTACACA 58.278 29.630 0.00 0.00 0.00 3.72
259 262 9.482627 TTTTTAGACAAATGTGTTGTTCAACTT 57.517 25.926 15.18 1.14 38.41 2.66
261 264 4.864247 AGACAAATGTGTTGTTCAACTTGC 59.136 37.500 15.18 7.53 38.41 4.01
264 267 1.169577 TGTGTTGTTCAACTTGCGGT 58.830 45.000 15.18 0.00 0.00 5.68
275 278 1.226746 ACTTGCGGTAACTGACTTGC 58.773 50.000 0.00 0.00 0.00 4.01
333 341 8.411991 AAGTTATTTTCGAAAAGGGGATTACA 57.588 30.769 25.87 1.94 0.00 2.41
350 358 0.322816 ACACCGGCTTCTGCATCATT 60.323 50.000 0.00 0.00 41.91 2.57
373 381 7.459795 TTGTAATGCACAATACCATCTTTGA 57.540 32.000 0.00 0.00 42.29 2.69
411 424 7.811713 AGAATAAAAGAAAAACTGCAGCTGATC 59.188 33.333 20.43 7.83 0.00 2.92
609 645 3.451141 TTTTAACCAGCAAAGGCACTG 57.549 42.857 0.00 0.00 44.61 3.66
612 648 3.359002 CCAGCAAAGGCACTGGTC 58.641 61.111 0.79 0.00 46.95 4.02
622 721 1.228552 GCACTGGTCAACACCCCAT 60.229 57.895 0.00 0.00 42.99 4.00
642 748 2.111999 TAAGTTGCTGGCCACTCGCT 62.112 55.000 15.70 3.48 37.74 4.93
645 751 3.258228 TTGCTGGCCACTCGCTGAT 62.258 57.895 15.70 0.00 37.74 2.90
646 752 1.898330 TTGCTGGCCACTCGCTGATA 61.898 55.000 15.70 0.00 37.74 2.15
648 754 0.533755 GCTGGCCACTCGCTGATAAT 60.534 55.000 0.00 0.00 37.74 1.28
651 757 3.257393 CTGGCCACTCGCTGATAATATC 58.743 50.000 0.00 0.00 37.74 1.63
652 758 2.028112 TGGCCACTCGCTGATAATATCC 60.028 50.000 0.00 0.00 37.74 2.59
653 759 2.028112 GGCCACTCGCTGATAATATCCA 60.028 50.000 0.00 0.00 37.74 3.41
654 760 3.369892 GGCCACTCGCTGATAATATCCAT 60.370 47.826 0.00 0.00 37.74 3.41
655 761 4.141937 GGCCACTCGCTGATAATATCCATA 60.142 45.833 0.00 0.00 37.74 2.74
656 762 5.046529 GCCACTCGCTGATAATATCCATAG 58.953 45.833 0.00 0.00 0.00 2.23
659 765 7.099764 CCACTCGCTGATAATATCCATAGTTT 58.900 38.462 0.00 0.00 0.00 2.66
660 766 7.604164 CCACTCGCTGATAATATCCATAGTTTT 59.396 37.037 0.00 0.00 0.00 2.43
673 779 6.693315 TCCATAGTTTTAAATAGTGCAGCC 57.307 37.500 0.00 0.00 0.00 4.85
675 781 5.505654 CCATAGTTTTAAATAGTGCAGCCGG 60.506 44.000 0.00 0.00 0.00 6.13
677 783 2.490509 GTTTTAAATAGTGCAGCCGGGT 59.509 45.455 0.00 0.00 0.00 5.28
678 784 1.745232 TTAAATAGTGCAGCCGGGTG 58.255 50.000 29.14 29.14 0.00 4.61
679 785 0.746563 TAAATAGTGCAGCCGGGTGC 60.747 55.000 43.64 43.64 44.27 5.01
690 796 1.687563 GCCGGGTGCTATTAAATGGT 58.312 50.000 2.18 0.00 36.87 3.55
692 798 2.223711 GCCGGGTGCTATTAAATGGTTG 60.224 50.000 2.18 0.00 36.87 3.77
694 800 3.066203 CCGGGTGCTATTAAATGGTTGTC 59.934 47.826 0.00 0.00 0.00 3.18
695 801 3.945285 CGGGTGCTATTAAATGGTTGTCT 59.055 43.478 0.00 0.00 0.00 3.41
696 802 4.398044 CGGGTGCTATTAAATGGTTGTCTT 59.602 41.667 0.00 0.00 0.00 3.01
697 803 5.448632 CGGGTGCTATTAAATGGTTGTCTTC 60.449 44.000 0.00 0.00 0.00 2.87
698 804 5.417580 GGGTGCTATTAAATGGTTGTCTTCA 59.582 40.000 0.00 0.00 0.00 3.02
699 805 6.322491 GGTGCTATTAAATGGTTGTCTTCAC 58.678 40.000 0.00 0.00 0.00 3.18
701 807 7.367285 GTGCTATTAAATGGTTGTCTTCACAA 58.633 34.615 0.00 0.00 40.40 3.33
703 809 8.584157 TGCTATTAAATGGTTGTCTTCACAAAT 58.416 29.630 0.00 0.00 44.32 2.32
706 812 8.986477 ATTAAATGGTTGTCTTCACAAATAGC 57.014 30.769 0.00 0.00 44.32 2.97
707 813 5.391312 AATGGTTGTCTTCACAAATAGCC 57.609 39.130 0.00 0.00 44.32 3.93
708 814 3.153919 TGGTTGTCTTCACAAATAGCCC 58.846 45.455 0.00 0.00 44.32 5.19
709 815 2.161609 GGTTGTCTTCACAAATAGCCCG 59.838 50.000 0.00 0.00 44.32 6.13
710 816 1.448985 TGTCTTCACAAATAGCCCGC 58.551 50.000 0.00 0.00 0.00 6.13
712 818 2.235155 TGTCTTCACAAATAGCCCGCTA 59.765 45.455 0.00 0.00 0.00 4.26
713 819 3.118408 TGTCTTCACAAATAGCCCGCTAT 60.118 43.478 3.31 3.31 40.63 2.97
714 820 4.100344 TGTCTTCACAAATAGCCCGCTATA 59.900 41.667 9.56 0.00 38.20 1.31
715 821 5.054477 GTCTTCACAAATAGCCCGCTATAA 58.946 41.667 9.56 0.09 38.20 0.98
716 822 5.050295 GTCTTCACAAATAGCCCGCTATAAC 60.050 44.000 9.56 0.00 38.20 1.89
717 823 3.735591 TCACAAATAGCCCGCTATAACC 58.264 45.455 9.56 0.00 38.20 2.85
718 824 2.812011 CACAAATAGCCCGCTATAACCC 59.188 50.000 9.56 0.00 38.20 4.11
719 825 2.073816 CAAATAGCCCGCTATAACCCG 58.926 52.381 9.56 0.00 38.20 5.28
721 827 1.345063 ATAGCCCGCTATAACCCGTT 58.655 50.000 7.44 0.00 37.47 4.44
722 828 1.122227 TAGCCCGCTATAACCCGTTT 58.878 50.000 0.00 0.00 0.00 3.60
723 829 0.253894 AGCCCGCTATAACCCGTTTT 59.746 50.000 0.00 0.00 0.00 2.43
727 833 2.484241 CCCGCTATAACCCGTTTTAGCT 60.484 50.000 20.44 0.00 43.32 3.32
730 836 2.220363 GCTATAACCCGTTTTAGCTCGC 59.780 50.000 17.54 0.00 42.69 5.03
731 837 2.685850 ATAACCCGTTTTAGCTCGCT 57.314 45.000 0.00 0.00 0.00 4.93
732 838 3.806625 ATAACCCGTTTTAGCTCGCTA 57.193 42.857 0.00 0.00 0.00 4.26
733 839 2.685850 AACCCGTTTTAGCTCGCTAT 57.314 45.000 0.00 0.00 0.00 2.97
735 841 3.366440 ACCCGTTTTAGCTCGCTATAG 57.634 47.619 0.00 0.00 0.00 1.31
736 842 2.059541 CCCGTTTTAGCTCGCTATAGC 58.940 52.381 15.09 15.09 43.11 2.97
748 854 4.558080 GCTCGCTATAGCTTCGTTATAACC 59.442 45.833 21.98 0.00 39.50 2.85
750 856 5.696822 TCGCTATAGCTTCGTTATAACCTG 58.303 41.667 21.98 2.00 39.32 4.00
753 859 6.807230 CGCTATAGCTTCGTTATAACCTGATT 59.193 38.462 21.98 0.00 39.32 2.57
755 861 9.635520 GCTATAGCTTCGTTATAACCTGATTTA 57.364 33.333 17.75 0.00 38.21 1.40
759 865 8.209917 AGCTTCGTTATAACCTGATTTAAAGG 57.790 34.615 10.01 0.00 40.93 3.11
760 866 6.910972 GCTTCGTTATAACCTGATTTAAAGGC 59.089 38.462 10.01 0.00 38.48 4.35
761 867 6.930667 TCGTTATAACCTGATTTAAAGGCC 57.069 37.500 10.01 0.00 38.48 5.19
762 868 5.824097 TCGTTATAACCTGATTTAAAGGCCC 59.176 40.000 10.01 0.00 38.48 5.80
763 869 5.277634 CGTTATAACCTGATTTAAAGGCCCG 60.278 44.000 10.01 0.00 38.48 6.13
765 871 0.683179 ACCTGATTTAAAGGCCCGCC 60.683 55.000 0.00 0.00 38.48 6.13
766 872 1.724582 CCTGATTTAAAGGCCCGCCG 61.725 60.000 0.00 0.00 41.95 6.46
767 873 1.001887 TGATTTAAAGGCCCGCCGT 60.002 52.632 0.00 0.00 41.95 5.68
768 874 0.609681 TGATTTAAAGGCCCGCCGTT 60.610 50.000 11.63 11.63 41.95 4.44
773 879 1.836802 TAAAGGCCCGCCGTTATTTT 58.163 45.000 9.66 3.12 41.95 1.82
775 881 0.528924 AAGGCCCGCCGTTATTTTTC 59.471 50.000 0.00 0.00 41.95 2.29
776 882 0.609681 AGGCCCGCCGTTATTTTTCA 60.610 50.000 0.00 0.00 41.95 2.69
777 883 0.458260 GGCCCGCCGTTATTTTTCAT 59.542 50.000 0.00 0.00 0.00 2.57
778 884 1.677052 GGCCCGCCGTTATTTTTCATA 59.323 47.619 0.00 0.00 0.00 2.15
779 885 2.099427 GGCCCGCCGTTATTTTTCATAA 59.901 45.455 0.00 0.00 0.00 1.90
780 886 3.110358 GCCCGCCGTTATTTTTCATAAC 58.890 45.455 0.00 0.00 0.00 1.89
781 887 3.697982 CCCGCCGTTATTTTTCATAACC 58.302 45.455 0.26 0.00 32.43 2.85
783 889 3.356145 CGCCGTTATTTTTCATAACCCG 58.644 45.455 0.26 0.58 32.43 5.28
784 890 3.181508 CGCCGTTATTTTTCATAACCCGT 60.182 43.478 0.26 0.00 32.43 5.28
787 893 6.497437 GCCGTTATTTTTCATAACCCGTTAT 58.503 36.000 0.00 0.00 36.27 1.89
788 894 6.974048 GCCGTTATTTTTCATAACCCGTTATT 59.026 34.615 0.00 0.00 33.79 1.40
813 919 5.878332 AAACATTGAGAATATCACACGCA 57.122 34.783 0.00 0.00 37.77 5.24
814 920 5.475273 AACATTGAGAATATCACACGCAG 57.525 39.130 0.00 0.00 37.77 5.18
884 990 3.869272 GTGGAGAATGCAGCCGCG 61.869 66.667 0.00 0.00 36.81 6.46
1003 1166 2.358737 GCACCGGAACACCTGAGG 60.359 66.667 9.46 0.00 0.00 3.86
1029 1199 0.170561 CAGACCAAGCAGAAGCATGC 59.829 55.000 10.51 10.51 46.88 4.06
1195 1401 2.575993 CCACGTGCTCTCCTCCAG 59.424 66.667 10.91 0.00 0.00 3.86
1479 1691 2.513204 TCGTCTACGGGGAGCTCG 60.513 66.667 7.83 0.00 40.29 5.03
1480 1692 4.253257 CGTCTACGGGGAGCTCGC 62.253 72.222 21.89 21.89 35.37 5.03
1714 3036 0.753262 AGTCTTGTTCGTGTGCCTCT 59.247 50.000 0.00 0.00 0.00 3.69
1735 3129 3.853355 ATGGGTTTGCAAACATGGAAA 57.147 38.095 35.95 18.50 40.63 3.13
1744 3138 7.440856 GGTTTGCAAACATGGAAATTCTTTCTA 59.559 33.333 35.95 0.00 40.63 2.10
1758 3152 9.248291 GAAATTCTTTCTACATCTTTGTTTGCA 57.752 29.630 0.00 0.00 37.28 4.08
1768 3162 9.630098 CTACATCTTTGTTTGCAACATCTTTAT 57.370 29.630 0.00 0.00 41.79 1.40
1770 3164 9.979578 ACATCTTTGTTTGCAACATCTTTATAA 57.020 25.926 0.00 0.00 41.79 0.98
1866 3987 3.338818 AGTGCTTGACATTTTGACGTG 57.661 42.857 0.00 0.00 0.00 4.49
1881 4002 2.267324 GTGTGAGCAGGAGGGAGC 59.733 66.667 0.00 0.00 0.00 4.70
1908 4029 2.766263 TGGAGTTAACATGGAGAGCGAT 59.234 45.455 8.61 0.00 0.00 4.58
1909 4030 3.197766 TGGAGTTAACATGGAGAGCGATT 59.802 43.478 8.61 0.00 0.00 3.34
2095 4216 1.805945 CGACGCAACCCAGCTAGAC 60.806 63.158 0.00 0.00 0.00 2.59
2111 4232 1.675641 GACGAGCTTGGCAATGGGT 60.676 57.895 0.32 0.00 0.00 4.51
2121 4242 3.674528 TGGCAATGGGTTGTGTAATTG 57.325 42.857 0.00 0.00 37.65 2.32
2173 4294 0.458543 ACGAGGCACACAAGCTATCG 60.459 55.000 10.74 10.74 43.85 2.92
2182 4303 3.130516 CACACAAGCTATCGGAGGAACTA 59.869 47.826 0.00 0.00 41.55 2.24
2189 4310 3.637694 GCTATCGGAGGAACTAAGGAAGT 59.362 47.826 0.00 0.00 41.55 3.01
2190 4311 4.261698 GCTATCGGAGGAACTAAGGAAGTC 60.262 50.000 0.00 0.00 41.55 3.01
2348 4488 9.758651 AAACAAGAAACTGGTAATAACATTTCC 57.241 29.630 8.52 0.00 0.00 3.13
2432 4578 0.535553 GGAGGCGGTTGTTTGTGGTA 60.536 55.000 0.00 0.00 0.00 3.25
2575 4721 5.310451 GAGGTCGAGAGGTGTATTAGAGAT 58.690 45.833 0.00 0.00 0.00 2.75
2611 4757 4.150359 AGAGGAAGGACGACTACAAAAGA 58.850 43.478 0.00 0.00 0.00 2.52
2719 4879 9.076596 GCCAAGTATTTTCAACAATGTAATCTC 57.923 33.333 0.00 0.00 0.00 2.75
2852 5024 7.607250 TGAAATTTCGTAAATTAACAGCCCAT 58.393 30.769 13.34 0.00 40.05 4.00
3032 5217 6.678878 AGTCTATCATATACGAACGTGCATT 58.321 36.000 10.14 0.00 0.00 3.56
3070 5255 1.550976 TGCACGGTGATGTGGTACATA 59.449 47.619 13.29 0.00 44.52 2.29
3222 5596 4.623171 CGTAAGAGGTGCCTTTATTGAGGT 60.623 45.833 0.00 0.00 38.33 3.85
3253 5627 6.136541 CCAAAGGGTTAGATCTGCAATAAC 57.863 41.667 5.18 0.81 0.00 1.89
3346 5746 3.206964 TCCTGAGTAGCTATGACAGTCG 58.793 50.000 17.20 8.31 0.00 4.18
3519 5919 0.317479 GGAGTGTCTTGCGGTGTAGT 59.683 55.000 0.00 0.00 0.00 2.73
3528 5928 0.599558 TGCGGTGTAGTTTAGCTCGT 59.400 50.000 0.00 0.00 0.00 4.18
3548 5948 2.676342 GTGTATTTAGCCGGTCAAGGTG 59.324 50.000 1.90 0.00 0.00 4.00
3569 5969 1.203523 GAACAACCAGCCAAACACACA 59.796 47.619 0.00 0.00 0.00 3.72
3577 5977 0.109039 GCCAAACACACAAACACGGT 60.109 50.000 0.00 0.00 0.00 4.83
3609 6010 5.513094 CCGTATGACCAAATGGAGTCCATAT 60.513 44.000 25.09 15.36 44.40 1.78
3610 6011 5.409520 CGTATGACCAAATGGAGTCCATATG 59.590 44.000 25.09 17.39 44.40 1.78
3611 6012 5.651612 ATGACCAAATGGAGTCCATATGA 57.348 39.130 25.09 6.21 44.40 2.15
3612 6013 4.780815 TGACCAAATGGAGTCCATATGAC 58.219 43.478 25.09 15.62 44.40 3.06
3613 6014 4.137543 GACCAAATGGAGTCCATATGACC 58.862 47.826 25.09 10.88 44.40 4.02
3614 6015 3.527253 ACCAAATGGAGTCCATATGACCA 59.473 43.478 25.09 8.57 44.40 4.02
3615 6016 4.168675 ACCAAATGGAGTCCATATGACCAT 59.831 41.667 25.09 4.70 44.40 3.55
3616 6017 5.372363 ACCAAATGGAGTCCATATGACCATA 59.628 40.000 25.09 0.00 44.40 2.74
3617 6018 5.707298 CCAAATGGAGTCCATATGACCATAC 59.293 44.000 25.09 4.85 44.40 2.39
3618 6019 6.298361 CAAATGGAGTCCATATGACCATACA 58.702 40.000 25.09 0.00 44.40 2.29
3619 6020 6.708885 AATGGAGTCCATATGACCATACAT 57.291 37.500 25.09 1.81 44.40 2.29
3620 6021 6.708885 ATGGAGTCCATATGACCATACATT 57.291 37.500 23.67 0.00 43.19 2.71
3621 6022 6.114187 TGGAGTCCATATGACCATACATTC 57.886 41.667 8.12 0.00 45.68 2.67
3622 6023 5.171476 GGAGTCCATATGACCATACATTCG 58.829 45.833 3.60 0.00 45.68 3.34
3623 6024 5.279506 GGAGTCCATATGACCATACATTCGT 60.280 44.000 3.60 0.00 45.68 3.85
3624 6025 6.174720 AGTCCATATGACCATACATTCGTT 57.825 37.500 3.65 0.00 45.68 3.85
3625 6026 5.991606 AGTCCATATGACCATACATTCGTTG 59.008 40.000 3.65 0.00 45.68 4.10
3626 6027 5.179368 GTCCATATGACCATACATTCGTTGG 59.821 44.000 3.65 0.00 38.09 3.77
3627 6028 4.083324 CCATATGACCATACATTCGTTGGC 60.083 45.833 3.65 0.00 33.66 4.52
3628 6029 2.481289 TGACCATACATTCGTTGGCA 57.519 45.000 0.00 0.00 33.66 4.92
3629 6030 2.997980 TGACCATACATTCGTTGGCAT 58.002 42.857 0.00 0.00 33.66 4.40
3630 6031 2.682352 TGACCATACATTCGTTGGCATG 59.318 45.455 0.00 0.00 33.66 4.06
3631 6032 2.023673 ACCATACATTCGTTGGCATGG 58.976 47.619 15.55 15.55 43.03 3.66
3632 6033 1.337703 CCATACATTCGTTGGCATGGG 59.662 52.381 0.00 0.00 37.92 4.00
3633 6034 1.032014 ATACATTCGTTGGCATGGGC 58.968 50.000 0.00 0.00 40.13 5.36
3634 6035 1.372838 TACATTCGTTGGCATGGGCG 61.373 55.000 0.00 0.00 42.47 6.13
3635 6036 3.140141 ATTCGTTGGCATGGGCGG 61.140 61.111 0.00 0.00 42.47 6.13
3636 6037 3.636929 ATTCGTTGGCATGGGCGGA 62.637 57.895 0.00 0.00 42.47 5.54
3637 6038 4.776322 TCGTTGGCATGGGCGGAG 62.776 66.667 0.00 0.00 42.47 4.63
3638 6039 4.776322 CGTTGGCATGGGCGGAGA 62.776 66.667 0.00 0.00 42.47 3.71
3639 6040 3.134127 GTTGGCATGGGCGGAGAC 61.134 66.667 0.00 0.00 42.47 3.36
3640 6041 3.645660 TTGGCATGGGCGGAGACA 61.646 61.111 0.00 0.00 37.00 3.41
3641 6042 3.626996 TTGGCATGGGCGGAGACAG 62.627 63.158 0.00 0.00 37.00 3.51
3642 6043 4.864334 GGCATGGGCGGAGACAGG 62.864 72.222 0.00 0.00 37.00 4.00
3689 6090 3.842923 CGTGAGGCCCATCTCGCT 61.843 66.667 0.00 0.00 40.88 4.93
3690 6091 2.107953 GTGAGGCCCATCTCGCTC 59.892 66.667 0.00 0.00 40.16 5.03
3691 6092 3.531207 TGAGGCCCATCTCGCTCG 61.531 66.667 0.00 0.00 36.61 5.03
3692 6093 3.532155 GAGGCCCATCTCGCTCGT 61.532 66.667 0.00 0.00 0.00 4.18
3693 6094 2.123854 AGGCCCATCTCGCTCGTA 60.124 61.111 0.00 0.00 0.00 3.43
3694 6095 2.027751 GGCCCATCTCGCTCGTAC 59.972 66.667 0.00 0.00 0.00 3.67
3695 6096 2.782222 GGCCCATCTCGCTCGTACA 61.782 63.158 0.00 0.00 0.00 2.90
3696 6097 1.589196 GCCCATCTCGCTCGTACAC 60.589 63.158 0.00 0.00 0.00 2.90
3697 6098 2.005960 GCCCATCTCGCTCGTACACT 62.006 60.000 0.00 0.00 0.00 3.55
3698 6099 1.306148 CCCATCTCGCTCGTACACTA 58.694 55.000 0.00 0.00 0.00 2.74
3699 6100 1.880675 CCCATCTCGCTCGTACACTAT 59.119 52.381 0.00 0.00 0.00 2.12
3700 6101 3.072211 CCCATCTCGCTCGTACACTATA 58.928 50.000 0.00 0.00 0.00 1.31
3701 6102 3.125487 CCCATCTCGCTCGTACACTATAG 59.875 52.174 0.00 0.00 0.00 1.31
3702 6103 3.425094 CCATCTCGCTCGTACACTATAGC 60.425 52.174 0.00 0.00 0.00 2.97
3703 6104 2.830104 TCTCGCTCGTACACTATAGCA 58.170 47.619 0.00 0.00 34.60 3.49
3704 6105 3.200483 TCTCGCTCGTACACTATAGCAA 58.800 45.455 0.00 0.00 34.60 3.91
3705 6106 3.624410 TCTCGCTCGTACACTATAGCAAA 59.376 43.478 0.00 0.00 34.60 3.68
3706 6107 4.275196 TCTCGCTCGTACACTATAGCAAAT 59.725 41.667 0.00 0.00 34.60 2.32
3707 6108 5.467735 TCTCGCTCGTACACTATAGCAAATA 59.532 40.000 0.00 0.00 34.60 1.40
3708 6109 6.148976 TCTCGCTCGTACACTATAGCAAATAT 59.851 38.462 0.00 0.00 34.60 1.28
3709 6110 7.332678 TCTCGCTCGTACACTATAGCAAATATA 59.667 37.037 0.00 0.00 34.60 0.86
3710 6111 7.239271 TCGCTCGTACACTATAGCAAATATAC 58.761 38.462 0.00 0.00 34.60 1.47
3711 6112 7.118825 TCGCTCGTACACTATAGCAAATATACT 59.881 37.037 0.00 0.00 34.60 2.12
3712 6113 7.216505 CGCTCGTACACTATAGCAAATATACTG 59.783 40.741 0.00 0.00 34.60 2.74
3713 6114 8.021973 GCTCGTACACTATAGCAAATATACTGT 58.978 37.037 0.00 0.00 35.05 3.55
3724 6125 9.811995 ATAGCAAATATACTGTAGAACAACGAA 57.188 29.630 0.00 0.00 0.00 3.85
3725 6126 8.186178 AGCAAATATACTGTAGAACAACGAAG 57.814 34.615 0.00 0.00 0.00 3.79
3726 6127 7.277981 AGCAAATATACTGTAGAACAACGAAGG 59.722 37.037 0.00 0.00 0.00 3.46
3727 6128 7.399523 CAAATATACTGTAGAACAACGAAGGC 58.600 38.462 0.00 0.00 0.00 4.35
3728 6129 4.803098 ATACTGTAGAACAACGAAGGCT 57.197 40.909 0.00 0.00 0.00 4.58
3729 6130 3.027974 ACTGTAGAACAACGAAGGCTC 57.972 47.619 0.00 0.00 0.00 4.70
3730 6131 2.288886 ACTGTAGAACAACGAAGGCTCC 60.289 50.000 0.00 0.00 0.00 4.70
3731 6132 1.001633 TGTAGAACAACGAAGGCTCCC 59.998 52.381 0.00 0.00 0.00 4.30
3732 6133 1.275573 GTAGAACAACGAAGGCTCCCT 59.724 52.381 0.00 0.00 33.87 4.20
3733 6134 0.035458 AGAACAACGAAGGCTCCCTG 59.965 55.000 0.00 0.00 32.13 4.45
3734 6135 0.955919 GAACAACGAAGGCTCCCTGG 60.956 60.000 0.00 0.00 32.13 4.45
3735 6136 2.045926 CAACGAAGGCTCCCTGGG 60.046 66.667 6.33 6.33 32.13 4.45
3736 6137 3.330720 AACGAAGGCTCCCTGGGG 61.331 66.667 14.00 4.79 32.13 4.96
3753 6154 4.148825 GCGTGAGGCCCATCTCGT 62.149 66.667 15.26 0.00 38.20 4.18
3754 6155 2.579201 CGTGAGGCCCATCTCGTT 59.421 61.111 0.00 0.00 36.61 3.85
3755 6156 1.519455 CGTGAGGCCCATCTCGTTC 60.519 63.158 0.00 0.00 36.61 3.95
3756 6157 1.519455 GTGAGGCCCATCTCGTTCG 60.519 63.158 0.00 0.00 36.61 3.95
3757 6158 1.982395 TGAGGCCCATCTCGTTCGT 60.982 57.895 0.00 0.00 36.61 3.85
3758 6159 1.218316 GAGGCCCATCTCGTTCGTT 59.782 57.895 0.00 0.00 0.00 3.85
3759 6160 1.079127 AGGCCCATCTCGTTCGTTG 60.079 57.895 0.00 0.00 0.00 4.10
3760 6161 2.750888 GGCCCATCTCGTTCGTTGC 61.751 63.158 0.00 0.00 0.00 4.17
3761 6162 2.750888 GCCCATCTCGTTCGTTGCC 61.751 63.158 0.00 0.00 0.00 4.52
3762 6163 1.079127 CCCATCTCGTTCGTTGCCT 60.079 57.895 0.00 0.00 0.00 4.75
3763 6164 1.361668 CCCATCTCGTTCGTTGCCTG 61.362 60.000 0.00 0.00 0.00 4.85
3764 6165 1.421485 CATCTCGTTCGTTGCCTGC 59.579 57.895 0.00 0.00 0.00 4.85
3765 6166 1.741770 ATCTCGTTCGTTGCCTGCC 60.742 57.895 0.00 0.00 0.00 4.85
3766 6167 2.172483 ATCTCGTTCGTTGCCTGCCT 62.172 55.000 0.00 0.00 0.00 4.75
3767 6168 2.357034 TCGTTCGTTGCCTGCCTC 60.357 61.111 0.00 0.00 0.00 4.70
3768 6169 2.664851 CGTTCGTTGCCTGCCTCA 60.665 61.111 0.00 0.00 0.00 3.86
3769 6170 2.034879 CGTTCGTTGCCTGCCTCAT 61.035 57.895 0.00 0.00 0.00 2.90
3770 6171 1.796796 GTTCGTTGCCTGCCTCATC 59.203 57.895 0.00 0.00 0.00 2.92
3771 6172 0.674895 GTTCGTTGCCTGCCTCATCT 60.675 55.000 0.00 0.00 0.00 2.90
3772 6173 0.674581 TTCGTTGCCTGCCTCATCTG 60.675 55.000 0.00 0.00 0.00 2.90
3773 6174 2.758089 CGTTGCCTGCCTCATCTGC 61.758 63.158 0.00 0.00 0.00 4.26
3774 6175 2.044650 TTGCCTGCCTCATCTGCC 60.045 61.111 0.00 0.00 0.00 4.85
3775 6176 2.609534 TTGCCTGCCTCATCTGCCT 61.610 57.895 0.00 0.00 0.00 4.75
3776 6177 2.516460 GCCTGCCTCATCTGCCTG 60.516 66.667 0.00 0.00 0.00 4.85
3777 6178 2.516460 CCTGCCTCATCTGCCTGC 60.516 66.667 0.00 0.00 0.00 4.85
3778 6179 2.895865 CTGCCTCATCTGCCTGCG 60.896 66.667 0.00 0.00 0.00 5.18
3779 6180 4.478371 TGCCTCATCTGCCTGCGG 62.478 66.667 0.00 0.00 0.00 5.69
3795 6196 4.082523 GGCCTGCCTGTGCGTCTA 62.083 66.667 0.00 0.00 41.78 2.59
3796 6197 2.815647 GCCTGCCTGTGCGTCTAC 60.816 66.667 0.00 0.00 41.78 2.59
3797 6198 2.973899 CCTGCCTGTGCGTCTACT 59.026 61.111 0.00 0.00 41.78 2.57
3798 6199 1.293498 CCTGCCTGTGCGTCTACTT 59.707 57.895 0.00 0.00 41.78 2.24
3799 6200 0.737715 CCTGCCTGTGCGTCTACTTC 60.738 60.000 0.00 0.00 41.78 3.01
3800 6201 1.073216 CTGCCTGTGCGTCTACTTCG 61.073 60.000 0.00 0.00 41.78 3.79
3801 6202 1.211969 GCCTGTGCGTCTACTTCGA 59.788 57.895 0.00 0.00 0.00 3.71
3802 6203 0.798771 GCCTGTGCGTCTACTTCGAG 60.799 60.000 0.00 0.00 0.00 4.04
3803 6204 0.522180 CCTGTGCGTCTACTTCGAGT 59.478 55.000 0.00 0.00 0.00 4.18
3804 6205 1.466024 CCTGTGCGTCTACTTCGAGTC 60.466 57.143 0.00 0.00 0.00 3.36
3805 6206 1.465387 CTGTGCGTCTACTTCGAGTCT 59.535 52.381 0.00 0.00 0.00 3.24
3806 6207 1.197036 TGTGCGTCTACTTCGAGTCTG 59.803 52.381 0.00 0.00 0.00 3.51
3807 6208 0.803117 TGCGTCTACTTCGAGTCTGG 59.197 55.000 0.00 0.00 0.00 3.86
3808 6209 1.085091 GCGTCTACTTCGAGTCTGGA 58.915 55.000 0.00 0.00 0.00 3.86
3809 6210 1.202054 GCGTCTACTTCGAGTCTGGAC 60.202 57.143 0.00 0.00 0.00 4.02
3810 6211 1.060842 CGTCTACTTCGAGTCTGGACG 59.939 57.143 12.65 12.65 38.42 4.79
3811 6212 2.344950 GTCTACTTCGAGTCTGGACGA 58.655 52.381 0.00 0.00 36.20 4.20
3812 6213 2.740981 GTCTACTTCGAGTCTGGACGAA 59.259 50.000 0.00 0.00 44.26 3.85
3813 6214 2.740981 TCTACTTCGAGTCTGGACGAAC 59.259 50.000 0.00 0.00 42.21 3.95
3814 6215 1.315690 ACTTCGAGTCTGGACGAACA 58.684 50.000 0.00 0.00 42.21 3.18
3815 6216 1.887198 ACTTCGAGTCTGGACGAACAT 59.113 47.619 0.00 0.00 42.21 2.71
3816 6217 2.254459 CTTCGAGTCTGGACGAACATG 58.746 52.381 0.00 0.00 42.21 3.21
3817 6218 1.530323 TCGAGTCTGGACGAACATGA 58.470 50.000 0.00 0.00 35.62 3.07
3818 6219 1.883926 TCGAGTCTGGACGAACATGAA 59.116 47.619 0.00 0.00 35.62 2.57
3819 6220 1.986378 CGAGTCTGGACGAACATGAAC 59.014 52.381 0.00 0.00 36.20 3.18
3820 6221 2.338500 GAGTCTGGACGAACATGAACC 58.662 52.381 0.00 0.00 36.20 3.62
3821 6222 1.691976 AGTCTGGACGAACATGAACCA 59.308 47.619 0.00 0.52 36.20 3.67
3822 6223 2.069273 GTCTGGACGAACATGAACCAG 58.931 52.381 0.00 10.34 46.33 4.00
3823 6224 0.798776 CTGGACGAACATGAACCAGC 59.201 55.000 0.00 0.00 40.90 4.85
3824 6225 0.605319 TGGACGAACATGAACCAGCC 60.605 55.000 0.00 0.00 0.00 4.85
3825 6226 0.605319 GGACGAACATGAACCAGCCA 60.605 55.000 0.00 0.00 0.00 4.75
3826 6227 0.798776 GACGAACATGAACCAGCCAG 59.201 55.000 0.00 0.00 0.00 4.85
3827 6228 1.237285 ACGAACATGAACCAGCCAGC 61.237 55.000 0.00 0.00 0.00 4.85
3828 6229 1.885871 GAACATGAACCAGCCAGCC 59.114 57.895 0.00 0.00 0.00 4.85
3829 6230 0.895100 GAACATGAACCAGCCAGCCA 60.895 55.000 0.00 0.00 0.00 4.75
3830 6231 1.181098 AACATGAACCAGCCAGCCAC 61.181 55.000 0.00 0.00 0.00 5.01
3831 6232 2.036256 ATGAACCAGCCAGCCACC 59.964 61.111 0.00 0.00 0.00 4.61
3832 6233 3.590466 ATGAACCAGCCAGCCACCC 62.590 63.158 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.868277 TGTTTAACAATTGTTTCTTGTCATCTT 57.132 25.926 27.66 2.57 39.31 2.40
5 6 9.645059 TCAATGTTTAACAATTGTTTCTTGTCA 57.355 25.926 27.66 17.44 39.31 3.58
7 8 9.651913 ACTCAATGTTTAACAATTGTTTCTTGT 57.348 25.926 27.66 10.14 39.31 3.16
24 25 7.015195 ACAAAGTTGGCCTATAAACTCAATGTT 59.985 33.333 3.32 0.00 41.29 2.71
25 26 6.493458 ACAAAGTTGGCCTATAAACTCAATGT 59.507 34.615 3.32 8.74 35.60 2.71
27 28 6.948309 AGACAAAGTTGGCCTATAAACTCAAT 59.052 34.615 3.32 0.00 36.67 2.57
28 29 6.303839 AGACAAAGTTGGCCTATAAACTCAA 58.696 36.000 3.32 0.00 36.67 3.02
29 30 5.876357 AGACAAAGTTGGCCTATAAACTCA 58.124 37.500 3.32 0.00 36.67 3.41
30 31 6.819397 AAGACAAAGTTGGCCTATAAACTC 57.181 37.500 3.32 0.00 36.67 3.01
31 32 7.597288 AAAAGACAAAGTTGGCCTATAAACT 57.403 32.000 3.32 1.61 36.67 2.66
32 33 9.188588 GTAAAAAGACAAAGTTGGCCTATAAAC 57.811 33.333 3.32 0.00 36.67 2.01
35 36 8.354426 GTTGTAAAAAGACAAAGTTGGCCTATA 58.646 33.333 3.32 0.00 40.88 1.31
36 37 6.969993 TGTAAAAAGACAAAGTTGGCCTAT 57.030 33.333 3.32 0.00 36.67 2.57
37 38 6.406065 GGTTGTAAAAAGACAAAGTTGGCCTA 60.406 38.462 3.32 0.00 40.88 3.93
38 39 5.416083 GTTGTAAAAAGACAAAGTTGGCCT 58.584 37.500 3.32 0.00 40.88 5.19
39 40 4.569162 GGTTGTAAAAAGACAAAGTTGGCC 59.431 41.667 0.00 0.00 40.88 5.36
40 41 5.416083 AGGTTGTAAAAAGACAAAGTTGGC 58.584 37.500 0.00 0.00 40.88 4.52
47 48 9.810545 CCTTCAAATTAGGTTGTAAAAAGACAA 57.189 29.630 0.00 0.00 36.98 3.18
48 49 8.973182 ACCTTCAAATTAGGTTGTAAAAAGACA 58.027 29.630 0.00 0.00 43.45 3.41
55 56 9.629878 TCAACTTACCTTCAAATTAGGTTGTAA 57.370 29.630 3.74 0.00 43.45 2.41
56 57 9.280174 CTCAACTTACCTTCAAATTAGGTTGTA 57.720 33.333 3.74 0.00 43.45 2.41
57 58 7.255486 GCTCAACTTACCTTCAAATTAGGTTGT 60.255 37.037 3.74 2.08 43.45 3.32
58 59 7.084486 GCTCAACTTACCTTCAAATTAGGTTG 58.916 38.462 3.74 0.00 43.45 3.77
61 62 6.655003 TCTGCTCAACTTACCTTCAAATTAGG 59.345 38.462 0.00 0.00 38.79 2.69
62 63 7.672983 TCTGCTCAACTTACCTTCAAATTAG 57.327 36.000 0.00 0.00 0.00 1.73
63 64 8.458573 TTTCTGCTCAACTTACCTTCAAATTA 57.541 30.769 0.00 0.00 0.00 1.40
65 66 6.959639 TTTCTGCTCAACTTACCTTCAAAT 57.040 33.333 0.00 0.00 0.00 2.32
66 67 6.959639 ATTTCTGCTCAACTTACCTTCAAA 57.040 33.333 0.00 0.00 0.00 2.69
81 82 9.920946 TGGAGACCTTAAATTATTATTTCTGCT 57.079 29.630 0.00 0.00 35.61 4.24
92 93 9.408648 GGAAATGATCTTGGAGACCTTAAATTA 57.591 33.333 0.00 0.00 0.00 1.40
95 96 6.886459 CAGGAAATGATCTTGGAGACCTTAAA 59.114 38.462 0.00 0.00 31.74 1.52
97 98 5.488919 ACAGGAAATGATCTTGGAGACCTTA 59.511 40.000 0.00 0.00 39.36 2.69
98 99 4.290722 ACAGGAAATGATCTTGGAGACCTT 59.709 41.667 0.00 0.00 39.36 3.50
99 100 3.848975 ACAGGAAATGATCTTGGAGACCT 59.151 43.478 0.00 0.00 39.36 3.85
100 101 4.227864 ACAGGAAATGATCTTGGAGACC 57.772 45.455 0.00 0.00 39.36 3.85
101 102 5.983540 ACTACAGGAAATGATCTTGGAGAC 58.016 41.667 6.79 0.00 46.58 3.36
102 103 6.627087 AACTACAGGAAATGATCTTGGAGA 57.373 37.500 6.79 0.00 46.58 3.71
104 105 9.753674 AAATTAACTACAGGAAATGATCTTGGA 57.246 29.630 0.00 0.00 39.36 3.53
106 107 9.708222 CGAAATTAACTACAGGAAATGATCTTG 57.292 33.333 0.00 0.00 40.79 3.02
107 108 9.667107 TCGAAATTAACTACAGGAAATGATCTT 57.333 29.630 0.00 0.00 0.00 2.40
108 109 9.667107 TTCGAAATTAACTACAGGAAATGATCT 57.333 29.630 0.00 0.00 0.00 2.75
113 114 9.901172 ACCTATTCGAAATTAACTACAGGAAAT 57.099 29.630 0.00 0.00 0.00 2.17
114 115 9.374838 GACCTATTCGAAATTAACTACAGGAAA 57.625 33.333 0.00 0.00 0.00 3.13
115 116 8.533657 TGACCTATTCGAAATTAACTACAGGAA 58.466 33.333 0.00 0.00 0.00 3.36
116 117 8.070034 TGACCTATTCGAAATTAACTACAGGA 57.930 34.615 0.00 0.00 0.00 3.86
117 118 8.888579 ATGACCTATTCGAAATTAACTACAGG 57.111 34.615 0.00 0.85 0.00 4.00
159 160 9.573133 GTTTTATGAATGGTTTATTCTCCTGTG 57.427 33.333 0.00 0.00 44.49 3.66
175 176 7.622713 TCAGGCCATTCAATTGTTTTATGAAT 58.377 30.769 5.01 0.00 42.80 2.57
176 177 7.002250 TCAGGCCATTCAATTGTTTTATGAA 57.998 32.000 5.01 0.00 37.47 2.57
178 179 7.388500 ACTTTCAGGCCATTCAATTGTTTTATG 59.612 33.333 5.01 5.67 0.00 1.90
179 180 7.452562 ACTTTCAGGCCATTCAATTGTTTTAT 58.547 30.769 5.01 0.00 0.00 1.40
180 181 6.825610 ACTTTCAGGCCATTCAATTGTTTTA 58.174 32.000 5.01 0.00 0.00 1.52
181 182 5.683681 ACTTTCAGGCCATTCAATTGTTTT 58.316 33.333 5.01 0.00 0.00 2.43
187 188 3.642848 ACACAACTTTCAGGCCATTCAAT 59.357 39.130 5.01 0.00 0.00 2.57
199 200 7.623268 ATGAGCGAATTTTAACACAACTTTC 57.377 32.000 0.00 0.00 0.00 2.62
253 256 2.869801 CAAGTCAGTTACCGCAAGTTGA 59.130 45.455 7.16 0.00 0.00 3.18
259 262 0.105964 ACAGCAAGTCAGTTACCGCA 59.894 50.000 0.00 0.00 31.02 5.69
261 264 0.512952 GCACAGCAAGTCAGTTACCG 59.487 55.000 0.00 0.00 0.00 4.02
264 267 3.133691 CAAGAGCACAGCAAGTCAGTTA 58.866 45.455 0.00 0.00 0.00 2.24
331 339 0.322816 AATGATGCAGAAGCCGGTGT 60.323 50.000 1.90 0.00 41.13 4.16
333 341 0.322816 ACAATGATGCAGAAGCCGGT 60.323 50.000 1.90 0.00 41.13 5.28
350 358 7.459795 TTCAAAGATGGTATTGTGCATTACA 57.540 32.000 0.00 0.00 37.56 2.41
361 369 9.354673 TCTCTTTCACTTTTTCAAAGATGGTAT 57.645 29.630 3.24 0.00 35.96 2.73
362 370 8.746052 TCTCTTTCACTTTTTCAAAGATGGTA 57.254 30.769 3.24 0.00 35.96 3.25
394 407 2.738846 TCTCGATCAGCTGCAGTTTTTC 59.261 45.455 16.64 7.45 0.00 2.29
397 410 2.028658 TCTTCTCGATCAGCTGCAGTTT 60.029 45.455 16.64 0.77 0.00 2.66
398 411 1.547820 TCTTCTCGATCAGCTGCAGTT 59.452 47.619 16.64 6.37 0.00 3.16
411 424 8.244494 TGAGTCATGTAATCTTTTTCTTCTCG 57.756 34.615 0.00 0.00 0.00 4.04
510 523 9.423061 GATTATACAAAAACAAGCAAGATGGTT 57.577 29.630 0.00 0.00 38.82 3.67
609 645 2.029380 GCAACTTAATGGGGTGTTGACC 60.029 50.000 8.60 0.00 41.35 4.02
612 648 2.029110 CCAGCAACTTAATGGGGTGTTG 60.029 50.000 0.00 0.00 41.64 3.33
622 721 1.234615 GCGAGTGGCCAGCAACTTAA 61.235 55.000 5.11 0.00 34.80 1.85
648 754 7.172532 CGGCTGCACTATTTAAAACTATGGATA 59.827 37.037 0.50 0.00 0.00 2.59
651 757 5.505654 CCGGCTGCACTATTTAAAACTATGG 60.506 44.000 0.50 0.00 0.00 2.74
652 758 5.505654 CCCGGCTGCACTATTTAAAACTATG 60.506 44.000 0.50 0.00 0.00 2.23
653 759 4.578928 CCCGGCTGCACTATTTAAAACTAT 59.421 41.667 0.50 0.00 0.00 2.12
654 760 3.942748 CCCGGCTGCACTATTTAAAACTA 59.057 43.478 0.50 0.00 0.00 2.24
655 761 2.752903 CCCGGCTGCACTATTTAAAACT 59.247 45.455 0.50 0.00 0.00 2.66
656 762 2.490509 ACCCGGCTGCACTATTTAAAAC 59.509 45.455 0.50 0.00 0.00 2.43
659 765 1.745232 CACCCGGCTGCACTATTTAA 58.255 50.000 0.50 0.00 0.00 1.52
660 766 0.746563 GCACCCGGCTGCACTATTTA 60.747 55.000 17.00 0.00 40.25 1.40
662 768 2.438434 GCACCCGGCTGCACTATT 60.438 61.111 17.00 0.00 40.25 1.73
671 777 1.687563 ACCATTTAATAGCACCCGGC 58.312 50.000 0.00 0.00 45.30 6.13
673 779 3.945285 AGACAACCATTTAATAGCACCCG 59.055 43.478 0.00 0.00 0.00 5.28
675 781 6.072175 TGTGAAGACAACCATTTAATAGCACC 60.072 38.462 0.00 0.00 0.00 5.01
677 783 7.517614 TTGTGAAGACAACCATTTAATAGCA 57.482 32.000 0.00 0.00 37.15 3.49
678 784 8.986477 ATTTGTGAAGACAACCATTTAATAGC 57.014 30.769 0.00 0.00 41.92 2.97
681 787 8.034804 GGCTATTTGTGAAGACAACCATTTAAT 58.965 33.333 0.00 0.00 41.92 1.40
684 790 5.279456 GGGCTATTTGTGAAGACAACCATTT 60.279 40.000 0.00 0.00 41.92 2.32
685 791 4.220602 GGGCTATTTGTGAAGACAACCATT 59.779 41.667 0.00 0.00 41.92 3.16
686 792 3.763897 GGGCTATTTGTGAAGACAACCAT 59.236 43.478 0.00 0.00 41.92 3.55
687 793 3.153919 GGGCTATTTGTGAAGACAACCA 58.846 45.455 0.00 0.00 41.92 3.67
688 794 2.161609 CGGGCTATTTGTGAAGACAACC 59.838 50.000 0.00 0.00 41.92 3.77
689 795 2.414161 GCGGGCTATTTGTGAAGACAAC 60.414 50.000 0.00 0.00 41.92 3.32
690 796 1.810151 GCGGGCTATTTGTGAAGACAA 59.190 47.619 0.00 0.00 40.45 3.18
692 798 1.739067 AGCGGGCTATTTGTGAAGAC 58.261 50.000 0.00 0.00 0.00 3.01
694 800 4.213482 GGTTATAGCGGGCTATTTGTGAAG 59.787 45.833 17.49 0.00 39.65 3.02
695 801 4.131596 GGTTATAGCGGGCTATTTGTGAA 58.868 43.478 17.49 3.98 39.65 3.18
696 802 3.495453 GGGTTATAGCGGGCTATTTGTGA 60.495 47.826 17.49 0.00 39.65 3.58
697 803 2.812011 GGGTTATAGCGGGCTATTTGTG 59.188 50.000 17.49 0.00 39.65 3.33
698 804 2.549349 CGGGTTATAGCGGGCTATTTGT 60.549 50.000 17.49 0.00 39.65 2.83
699 805 2.073816 CGGGTTATAGCGGGCTATTTG 58.926 52.381 17.49 1.84 39.65 2.32
701 807 1.345063 ACGGGTTATAGCGGGCTATT 58.655 50.000 17.49 3.74 39.65 1.73
703 809 1.122227 AAACGGGTTATAGCGGGCTA 58.878 50.000 2.42 2.42 0.00 3.93
704 810 0.253894 AAAACGGGTTATAGCGGGCT 59.746 50.000 0.00 0.00 0.00 5.19
706 812 1.869132 GCTAAAACGGGTTATAGCGGG 59.131 52.381 4.89 0.00 32.35 6.13
707 813 2.798847 GAGCTAAAACGGGTTATAGCGG 59.201 50.000 11.56 0.00 44.19 5.52
708 814 2.470257 CGAGCTAAAACGGGTTATAGCG 59.530 50.000 11.56 0.00 44.19 4.26
709 815 2.220363 GCGAGCTAAAACGGGTTATAGC 59.780 50.000 10.18 10.18 40.77 2.97
710 816 3.714391 AGCGAGCTAAAACGGGTTATAG 58.286 45.455 0.00 0.00 0.00 1.31
712 818 2.685850 AGCGAGCTAAAACGGGTTAT 57.314 45.000 0.00 0.00 0.00 1.89
713 819 3.806625 ATAGCGAGCTAAAACGGGTTA 57.193 42.857 9.00 0.00 31.73 2.85
714 820 2.685850 ATAGCGAGCTAAAACGGGTT 57.314 45.000 9.00 0.00 31.73 4.11
715 821 2.545322 GCTATAGCGAGCTAAAACGGGT 60.545 50.000 9.40 0.00 39.50 5.28
716 822 2.059541 GCTATAGCGAGCTAAAACGGG 58.940 52.381 9.40 0.00 39.50 5.28
733 839 9.321562 CCTTTAAATCAGGTTATAACGAAGCTA 57.678 33.333 9.46 0.00 35.44 3.32
735 841 6.910972 GCCTTTAAATCAGGTTATAACGAAGC 59.089 38.462 9.46 0.00 33.40 3.86
736 842 7.415229 GGCCTTTAAATCAGGTTATAACGAAG 58.585 38.462 9.46 2.41 33.40 3.79
737 843 6.319405 GGGCCTTTAAATCAGGTTATAACGAA 59.681 38.462 0.84 0.00 33.40 3.85
739 845 5.277634 CGGGCCTTTAAATCAGGTTATAACG 60.278 44.000 0.84 0.00 33.40 3.18
740 846 5.506815 GCGGGCCTTTAAATCAGGTTATAAC 60.507 44.000 7.09 7.09 33.40 1.89
743 849 2.956333 GCGGGCCTTTAAATCAGGTTAT 59.044 45.455 0.84 0.00 33.40 1.89
744 850 2.371306 GCGGGCCTTTAAATCAGGTTA 58.629 47.619 0.84 0.00 33.40 2.85
745 851 1.182667 GCGGGCCTTTAAATCAGGTT 58.817 50.000 0.84 0.00 33.40 3.50
748 854 1.029947 ACGGCGGGCCTTTAAATCAG 61.030 55.000 13.24 0.00 0.00 2.90
750 856 1.381522 TAACGGCGGGCCTTTAAATC 58.618 50.000 13.24 0.00 28.68 2.17
753 859 1.836802 AAATAACGGCGGGCCTTTAA 58.163 45.000 13.24 0.00 34.27 1.52
755 861 0.970640 AAAAATAACGGCGGGCCTTT 59.029 45.000 13.24 7.41 0.00 3.11
756 862 0.528924 GAAAAATAACGGCGGGCCTT 59.471 50.000 13.24 0.00 0.00 4.35
757 863 0.609681 TGAAAAATAACGGCGGGCCT 60.610 50.000 13.24 0.00 0.00 5.19
759 865 3.110358 GTTATGAAAAATAACGGCGGGC 58.890 45.455 13.24 0.00 0.00 6.13
760 866 3.489568 GGGTTATGAAAAATAACGGCGGG 60.490 47.826 13.24 0.00 35.83 6.13
761 867 3.697982 GGGTTATGAAAAATAACGGCGG 58.302 45.455 13.24 0.00 35.83 6.13
762 868 3.181508 ACGGGTTATGAAAAATAACGGCG 60.182 43.478 4.80 4.80 35.83 6.46
763 869 4.359971 ACGGGTTATGAAAAATAACGGC 57.640 40.909 2.98 0.00 35.83 5.68
787 893 8.293157 TGCGTGTGATATTCTCAATGTTTTAAA 58.707 29.630 0.00 0.00 35.07 1.52
788 894 7.811653 TGCGTGTGATATTCTCAATGTTTTAA 58.188 30.769 0.00 0.00 35.07 1.52
791 897 5.412594 ACTGCGTGTGATATTCTCAATGTTT 59.587 36.000 0.00 0.00 35.07 2.83
792 898 4.937620 ACTGCGTGTGATATTCTCAATGTT 59.062 37.500 0.00 0.00 35.07 2.71
808 914 1.570813 TCAGACAAAGACACTGCGTG 58.429 50.000 7.07 7.07 39.75 5.34
810 916 2.802247 TCAATCAGACAAAGACACTGCG 59.198 45.455 0.00 0.00 0.00 5.18
811 917 4.139183 GTCAATCAGACAAAGACACTGC 57.861 45.455 0.00 0.00 46.77 4.40
823 929 0.895530 GAGGACACCCGTCAATCAGA 59.104 55.000 0.00 0.00 44.54 3.27
824 930 0.458543 CGAGGACACCCGTCAATCAG 60.459 60.000 0.00 0.00 44.54 2.90
884 990 1.578206 GAAGCAACGAGGAAGGTGGC 61.578 60.000 0.00 0.00 34.46 5.01
940 1103 0.962855 GGAAAGGGTGGAAGCTGAGC 60.963 60.000 0.00 0.00 0.00 4.26
944 1107 1.073199 CACGGAAAGGGTGGAAGCT 59.927 57.895 0.00 0.00 0.00 3.74
1003 1166 0.620556 TCTGCTTGGTCTGGGGATTC 59.379 55.000 0.00 0.00 0.00 2.52
1549 2855 2.997315 CGTCCTCCTGACCCAGCA 60.997 66.667 0.00 0.00 41.18 4.41
1595 2901 2.490991 GTCTTAAGGAACAACGGCTGT 58.509 47.619 1.85 0.00 41.27 4.40
1714 3036 4.963318 TTTCCATGTTTGCAAACCCATA 57.037 36.364 33.33 19.03 38.11 2.74
1824 3945 8.573885 GCACTAATTTTTCTGTAAAACCCTACT 58.426 33.333 0.00 0.00 38.48 2.57
1866 3987 2.844072 GAACGCTCCCTCCTGCTCAC 62.844 65.000 0.00 0.00 0.00 3.51
1881 4002 4.503910 TCTCCATGTTAACTCCATGAACG 58.496 43.478 7.22 0.00 41.78 3.95
2095 4216 1.213537 CAACCCATTGCCAAGCTCG 59.786 57.895 0.00 0.00 0.00 5.03
2111 4232 7.271511 AGAAAAGATTTGCCACAATTACACAA 58.728 30.769 0.00 0.00 0.00 3.33
2121 4242 5.170748 CAACCCATAGAAAAGATTTGCCAC 58.829 41.667 0.00 0.00 0.00 5.01
2173 4294 4.223032 TCACATGACTTCCTTAGTTCCTCC 59.777 45.833 0.00 0.00 37.17 4.30
2182 4303 5.013495 TCCATTCTTCTCACATGACTTCCTT 59.987 40.000 0.00 0.00 0.00 3.36
2189 4310 6.888088 ACAATCAATCCATTCTTCTCACATGA 59.112 34.615 0.00 0.00 0.00 3.07
2190 4311 7.096884 ACAATCAATCCATTCTTCTCACATG 57.903 36.000 0.00 0.00 0.00 3.21
2432 4578 2.421529 GCGGAATTCCCACAAGAGGTAT 60.422 50.000 19.01 0.00 34.14 2.73
2575 4721 0.343018 TCCTCTCCCCATCCATGACA 59.657 55.000 0.00 0.00 0.00 3.58
2611 4757 5.664294 TTTGCATCCACTTCATAGCATTT 57.336 34.783 0.00 0.00 0.00 2.32
2719 4879 9.807649 ATTGCCTACTTGCTTATTTTGAAATAG 57.192 29.630 0.00 0.00 32.87 1.73
2797 4963 6.625740 CGTTCCAAATGGTGAGAATTTAGCAT 60.626 38.462 0.00 0.00 36.66 3.79
3012 5197 6.306117 CCGTAAATGCACGTTCGTATATGATA 59.694 38.462 0.00 0.00 40.31 2.15
3032 5217 1.078072 ATTGCGTGATGCCCCGTAA 60.078 52.632 0.00 0.00 45.60 3.18
3142 5515 5.586877 TCCTACCTAGGCTAAAAACTCTCA 58.413 41.667 9.30 0.00 43.31 3.27
3155 5529 6.189133 GTGATTACCTATCCTCCTACCTAGG 58.811 48.000 7.41 7.41 37.35 3.02
3251 5625 6.931281 CCCATAATGATGTGATCTCTAACGTT 59.069 38.462 5.88 5.88 0.00 3.99
3253 5627 6.691508 TCCCATAATGATGTGATCTCTAACG 58.308 40.000 0.00 0.00 0.00 3.18
3346 5746 2.267961 CCGCCCCCAACACTACTC 59.732 66.667 0.00 0.00 0.00 2.59
3378 5778 1.429463 CAACCAACCTACTCGCTGAC 58.571 55.000 0.00 0.00 0.00 3.51
3447 5847 2.469274 CAGTGGAAGACTGTGCTCAT 57.531 50.000 0.00 0.00 46.30 2.90
3455 5855 1.542108 GCTCTGTTGCAGTGGAAGACT 60.542 52.381 0.00 0.00 34.02 3.24
3469 5869 1.217511 CCTGTGCTCGATGCTCTGT 59.782 57.895 8.07 0.00 43.37 3.41
3519 5919 3.119029 ACCGGCTAAATACACGAGCTAAA 60.119 43.478 0.00 0.00 36.43 1.85
3528 5928 2.355310 CCACCTTGACCGGCTAAATACA 60.355 50.000 0.00 0.00 0.00 2.29
3548 5948 0.820871 TGTGTTTGGCTGGTTGTTCC 59.179 50.000 0.00 0.00 0.00 3.62
3577 5977 1.780107 TTGGTCATACGGGTGCCCAA 61.780 55.000 8.14 1.37 35.37 4.12
3596 5997 6.708885 ATGTATGGTCATATGGACTCCATT 57.291 37.500 16.03 1.86 42.23 3.16
3609 6010 2.481289 TGCCAACGAATGTATGGTCA 57.519 45.000 0.00 0.00 36.57 4.02
3610 6011 2.033299 CCATGCCAACGAATGTATGGTC 59.967 50.000 10.13 0.00 37.22 4.02
3611 6012 2.023673 CCATGCCAACGAATGTATGGT 58.976 47.619 10.13 0.00 37.22 3.55
3612 6013 1.337703 CCCATGCCAACGAATGTATGG 59.662 52.381 10.95 10.95 39.64 2.74
3613 6014 1.269206 GCCCATGCCAACGAATGTATG 60.269 52.381 0.00 0.00 0.00 2.39
3614 6015 1.032014 GCCCATGCCAACGAATGTAT 58.968 50.000 0.00 0.00 0.00 2.29
3615 6016 1.372838 CGCCCATGCCAACGAATGTA 61.373 55.000 0.00 0.00 0.00 2.29
3616 6017 2.699768 CGCCCATGCCAACGAATGT 61.700 57.895 0.00 0.00 0.00 2.71
3617 6018 2.102749 CGCCCATGCCAACGAATG 59.897 61.111 0.00 0.00 0.00 2.67
3618 6019 3.140141 CCGCCCATGCCAACGAAT 61.140 61.111 0.00 0.00 0.00 3.34
3619 6020 4.337177 TCCGCCCATGCCAACGAA 62.337 61.111 0.00 0.00 0.00 3.85
3620 6021 4.776322 CTCCGCCCATGCCAACGA 62.776 66.667 0.00 0.00 0.00 3.85
3621 6022 4.776322 TCTCCGCCCATGCCAACG 62.776 66.667 0.00 0.00 0.00 4.10
3622 6023 3.134127 GTCTCCGCCCATGCCAAC 61.134 66.667 0.00 0.00 0.00 3.77
3623 6024 3.626996 CTGTCTCCGCCCATGCCAA 62.627 63.158 0.00 0.00 0.00 4.52
3624 6025 4.100084 CTGTCTCCGCCCATGCCA 62.100 66.667 0.00 0.00 0.00 4.92
3625 6026 4.864334 CCTGTCTCCGCCCATGCC 62.864 72.222 0.00 0.00 0.00 4.40
3627 6028 4.864334 GGCCTGTCTCCGCCCATG 62.864 72.222 0.00 0.00 39.39 3.66
3672 6073 3.781770 GAGCGAGATGGGCCTCACG 62.782 68.421 4.53 11.33 32.86 4.35
3673 6074 2.107953 GAGCGAGATGGGCCTCAC 59.892 66.667 4.53 0.00 32.86 3.51
3674 6075 2.904178 TACGAGCGAGATGGGCCTCA 62.904 60.000 4.53 0.00 32.86 3.86
3675 6076 2.194212 TACGAGCGAGATGGGCCTC 61.194 63.158 4.53 0.00 0.00 4.70
3676 6077 2.123854 TACGAGCGAGATGGGCCT 60.124 61.111 4.53 0.00 0.00 5.19
3677 6078 2.027751 GTACGAGCGAGATGGGCC 59.972 66.667 0.00 0.00 0.00 5.80
3678 6079 1.589196 GTGTACGAGCGAGATGGGC 60.589 63.158 0.00 0.00 0.00 5.36
3679 6080 1.306148 TAGTGTACGAGCGAGATGGG 58.694 55.000 0.00 0.00 0.00 4.00
3680 6081 3.425094 GCTATAGTGTACGAGCGAGATGG 60.425 52.174 0.84 0.00 0.00 3.51
3681 6082 3.186613 TGCTATAGTGTACGAGCGAGATG 59.813 47.826 0.84 0.00 37.77 2.90
3682 6083 3.400255 TGCTATAGTGTACGAGCGAGAT 58.600 45.455 0.84 0.00 37.77 2.75
3683 6084 2.830104 TGCTATAGTGTACGAGCGAGA 58.170 47.619 0.84 0.00 37.77 4.04
3684 6085 3.604065 TTGCTATAGTGTACGAGCGAG 57.396 47.619 0.84 0.00 37.77 5.03
3685 6086 4.563337 ATTTGCTATAGTGTACGAGCGA 57.437 40.909 0.84 0.00 37.77 4.93
3686 6087 7.216505 CAGTATATTTGCTATAGTGTACGAGCG 59.783 40.741 0.84 0.00 38.29 5.03
3687 6088 8.383264 CAGTATATTTGCTATAGTGTACGAGC 57.617 38.462 0.84 0.00 38.29 5.03
3698 6099 9.811995 TTCGTTGTTCTACAGTATATTTGCTAT 57.188 29.630 0.00 0.00 0.00 2.97
3699 6100 9.297586 CTTCGTTGTTCTACAGTATATTTGCTA 57.702 33.333 0.00 0.00 0.00 3.49
3700 6101 7.277981 CCTTCGTTGTTCTACAGTATATTTGCT 59.722 37.037 0.00 0.00 0.00 3.91
3701 6102 7.399523 CCTTCGTTGTTCTACAGTATATTTGC 58.600 38.462 0.00 0.00 0.00 3.68
3702 6103 7.277981 AGCCTTCGTTGTTCTACAGTATATTTG 59.722 37.037 0.00 0.00 0.00 2.32
3703 6104 7.328737 AGCCTTCGTTGTTCTACAGTATATTT 58.671 34.615 0.00 0.00 0.00 1.40
3704 6105 6.875076 AGCCTTCGTTGTTCTACAGTATATT 58.125 36.000 0.00 0.00 0.00 1.28
3705 6106 6.461231 GGAGCCTTCGTTGTTCTACAGTATAT 60.461 42.308 0.00 0.00 0.00 0.86
3706 6107 5.163581 GGAGCCTTCGTTGTTCTACAGTATA 60.164 44.000 0.00 0.00 0.00 1.47
3707 6108 4.381718 GGAGCCTTCGTTGTTCTACAGTAT 60.382 45.833 0.00 0.00 0.00 2.12
3708 6109 3.057033 GGAGCCTTCGTTGTTCTACAGTA 60.057 47.826 0.00 0.00 0.00 2.74
3709 6110 2.288886 GGAGCCTTCGTTGTTCTACAGT 60.289 50.000 0.00 0.00 0.00 3.55
3710 6111 2.338500 GGAGCCTTCGTTGTTCTACAG 58.662 52.381 0.00 0.00 0.00 2.74
3711 6112 1.001633 GGGAGCCTTCGTTGTTCTACA 59.998 52.381 0.00 0.00 0.00 2.74
3712 6113 1.275573 AGGGAGCCTTCGTTGTTCTAC 59.724 52.381 0.00 0.00 0.00 2.59
3713 6114 1.275291 CAGGGAGCCTTCGTTGTTCTA 59.725 52.381 0.00 0.00 0.00 2.10
3714 6115 0.035458 CAGGGAGCCTTCGTTGTTCT 59.965 55.000 0.00 0.00 0.00 3.01
3715 6116 0.955919 CCAGGGAGCCTTCGTTGTTC 60.956 60.000 0.00 0.00 0.00 3.18
3716 6117 1.073199 CCAGGGAGCCTTCGTTGTT 59.927 57.895 0.00 0.00 0.00 2.83
3717 6118 2.750350 CCAGGGAGCCTTCGTTGT 59.250 61.111 0.00 0.00 0.00 3.32
3718 6119 2.045926 CCCAGGGAGCCTTCGTTG 60.046 66.667 0.00 0.00 0.00 4.10
3719 6120 3.330720 CCCCAGGGAGCCTTCGTT 61.331 66.667 7.25 0.00 37.50 3.85
3736 6137 3.665675 AACGAGATGGGCCTCACGC 62.666 63.158 17.50 5.99 33.33 5.34
3737 6138 1.519455 GAACGAGATGGGCCTCACG 60.519 63.158 16.52 16.52 35.70 4.35
3738 6139 1.519455 CGAACGAGATGGGCCTCAC 60.519 63.158 4.53 0.00 32.86 3.51
3739 6140 1.541310 AACGAACGAGATGGGCCTCA 61.541 55.000 4.53 0.00 32.86 3.86
3740 6141 1.084370 CAACGAACGAGATGGGCCTC 61.084 60.000 4.53 0.00 0.00 4.70
3741 6142 1.079127 CAACGAACGAGATGGGCCT 60.079 57.895 4.53 0.00 0.00 5.19
3742 6143 2.750888 GCAACGAACGAGATGGGCC 61.751 63.158 0.00 0.00 0.00 5.80
3743 6144 2.750888 GGCAACGAACGAGATGGGC 61.751 63.158 0.14 0.00 0.00 5.36
3744 6145 1.079127 AGGCAACGAACGAGATGGG 60.079 57.895 0.14 0.00 46.39 4.00
3745 6146 1.970917 GCAGGCAACGAACGAGATGG 61.971 60.000 0.14 0.00 46.39 3.51
3746 6147 1.421485 GCAGGCAACGAACGAGATG 59.579 57.895 0.14 0.00 46.39 2.90
3747 6148 1.741770 GGCAGGCAACGAACGAGAT 60.742 57.895 0.14 0.00 46.39 2.75
3748 6149 2.357034 GGCAGGCAACGAACGAGA 60.357 61.111 0.14 0.00 46.39 4.04
3749 6150 2.357517 AGGCAGGCAACGAACGAG 60.358 61.111 0.14 0.00 46.39 4.18
3750 6151 2.357034 GAGGCAGGCAACGAACGA 60.357 61.111 0.14 0.00 46.39 3.85
3751 6152 1.970917 GATGAGGCAGGCAACGAACG 61.971 60.000 0.00 0.00 46.39 3.95
3752 6153 0.674895 AGATGAGGCAGGCAACGAAC 60.675 55.000 0.00 0.00 46.39 3.95
3753 6154 0.674581 CAGATGAGGCAGGCAACGAA 60.675 55.000 0.00 0.00 46.39 3.85
3754 6155 1.078918 CAGATGAGGCAGGCAACGA 60.079 57.895 0.00 0.00 46.39 3.85
3755 6156 2.758089 GCAGATGAGGCAGGCAACG 61.758 63.158 0.00 0.00 46.39 4.10
3756 6157 2.413142 GGCAGATGAGGCAGGCAAC 61.413 63.158 0.00 0.00 0.00 4.17
3757 6158 2.044650 GGCAGATGAGGCAGGCAA 60.045 61.111 0.00 0.00 0.00 4.52
3758 6159 3.013327 AGGCAGATGAGGCAGGCA 61.013 61.111 0.00 0.00 36.37 4.75
3759 6160 2.516460 CAGGCAGATGAGGCAGGC 60.516 66.667 0.00 0.00 36.37 4.85
3760 6161 2.516460 GCAGGCAGATGAGGCAGG 60.516 66.667 0.00 0.00 36.37 4.85
3761 6162 2.895865 CGCAGGCAGATGAGGCAG 60.896 66.667 0.00 0.00 36.37 4.85
3762 6163 4.478371 CCGCAGGCAGATGAGGCA 62.478 66.667 0.00 0.00 46.14 4.75
3778 6179 4.082523 TAGACGCACAGGCAGGCC 62.083 66.667 0.97 0.97 41.24 5.19
3779 6180 2.788191 AAGTAGACGCACAGGCAGGC 62.788 60.000 0.00 0.00 41.24 4.85
3780 6181 0.737715 GAAGTAGACGCACAGGCAGG 60.738 60.000 0.00 0.00 41.24 4.85
3781 6182 1.073216 CGAAGTAGACGCACAGGCAG 61.073 60.000 0.00 0.00 41.24 4.85
3782 6183 1.080772 CGAAGTAGACGCACAGGCA 60.081 57.895 0.00 0.00 41.24 4.75
3783 6184 0.798771 CTCGAAGTAGACGCACAGGC 60.799 60.000 0.00 0.00 0.00 4.85
3784 6185 0.522180 ACTCGAAGTAGACGCACAGG 59.478 55.000 0.00 0.00 0.00 4.00
3785 6186 1.465387 AGACTCGAAGTAGACGCACAG 59.535 52.381 0.00 0.00 0.00 3.66
3786 6187 1.197036 CAGACTCGAAGTAGACGCACA 59.803 52.381 0.00 0.00 0.00 4.57
3787 6188 1.466024 CCAGACTCGAAGTAGACGCAC 60.466 57.143 0.00 0.00 0.00 5.34
3788 6189 0.803117 CCAGACTCGAAGTAGACGCA 59.197 55.000 0.00 0.00 0.00 5.24
3789 6190 1.085091 TCCAGACTCGAAGTAGACGC 58.915 55.000 0.00 0.00 0.00 5.19
3790 6191 1.060842 CGTCCAGACTCGAAGTAGACG 59.939 57.143 9.33 9.33 38.79 4.18
3791 6192 2.344950 TCGTCCAGACTCGAAGTAGAC 58.655 52.381 0.00 0.00 33.13 2.59
3792 6193 2.740981 GTTCGTCCAGACTCGAAGTAGA 59.259 50.000 0.00 0.00 44.59 2.59
3793 6194 2.483106 TGTTCGTCCAGACTCGAAGTAG 59.517 50.000 0.00 0.00 44.59 2.57
3794 6195 2.497138 TGTTCGTCCAGACTCGAAGTA 58.503 47.619 0.00 0.00 44.59 2.24
3795 6196 1.315690 TGTTCGTCCAGACTCGAAGT 58.684 50.000 0.00 0.00 44.59 3.01
3796 6197 2.095212 TCATGTTCGTCCAGACTCGAAG 60.095 50.000 0.00 0.00 44.59 3.79
3797 6198 1.883926 TCATGTTCGTCCAGACTCGAA 59.116 47.619 0.00 0.00 42.41 3.71
3798 6199 1.530323 TCATGTTCGTCCAGACTCGA 58.470 50.000 0.00 0.00 0.00 4.04
3799 6200 1.986378 GTTCATGTTCGTCCAGACTCG 59.014 52.381 0.00 0.00 0.00 4.18
3800 6201 2.288825 TGGTTCATGTTCGTCCAGACTC 60.289 50.000 0.00 0.00 0.00 3.36
3801 6202 1.691976 TGGTTCATGTTCGTCCAGACT 59.308 47.619 0.00 0.00 0.00 3.24
3802 6203 2.069273 CTGGTTCATGTTCGTCCAGAC 58.931 52.381 14.22 0.00 45.76 3.51
3803 6204 1.608025 GCTGGTTCATGTTCGTCCAGA 60.608 52.381 19.63 0.00 45.76 3.86
3804 6205 0.798776 GCTGGTTCATGTTCGTCCAG 59.201 55.000 14.72 14.72 45.68 3.86
3805 6206 0.605319 GGCTGGTTCATGTTCGTCCA 60.605 55.000 0.00 0.00 0.00 4.02
3806 6207 0.605319 TGGCTGGTTCATGTTCGTCC 60.605 55.000 0.00 0.00 0.00 4.79
3807 6208 0.798776 CTGGCTGGTTCATGTTCGTC 59.201 55.000 0.00 0.00 0.00 4.20
3808 6209 1.237285 GCTGGCTGGTTCATGTTCGT 61.237 55.000 0.00 0.00 0.00 3.85
3809 6210 1.503542 GCTGGCTGGTTCATGTTCG 59.496 57.895 0.00 0.00 0.00 3.95
3810 6211 0.895100 TGGCTGGCTGGTTCATGTTC 60.895 55.000 2.00 0.00 0.00 3.18
3811 6212 1.153524 TGGCTGGCTGGTTCATGTT 59.846 52.632 2.00 0.00 0.00 2.71
3812 6213 1.604593 GTGGCTGGCTGGTTCATGT 60.605 57.895 2.00 0.00 0.00 3.21
3813 6214 2.345760 GGTGGCTGGCTGGTTCATG 61.346 63.158 2.00 0.00 0.00 3.07
3814 6215 2.036256 GGTGGCTGGCTGGTTCAT 59.964 61.111 2.00 0.00 0.00 2.57
3815 6216 4.284550 GGGTGGCTGGCTGGTTCA 62.285 66.667 2.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.