Multiple sequence alignment - TraesCS2A01G056100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G056100 chr2A 100.000 4183 0 0 1 4183 23957801 23961983 0.000000e+00 7725.0
1 TraesCS2A01G056100 chr2A 80.969 1135 173 24 2265 3394 23971585 23972681 0.000000e+00 859.0
2 TraesCS2A01G056100 chr2A 83.284 670 103 6 1038 1701 22573570 22572904 3.580000e-170 608.0
3 TraesCS2A01G056100 chr2A 96.215 317 11 1 179 495 597848127 597847812 6.200000e-143 518.0
4 TraesCS2A01G056100 chr2A 97.500 40 1 0 1958 1997 1562378 1562417 7.500000e-08 69.4
5 TraesCS2A01G056100 chr2D 93.105 2074 122 11 2051 4118 22120532 22122590 0.000000e+00 3018.0
6 TraesCS2A01G056100 chr2D 94.043 940 46 4 911 1849 22119295 22120225 0.000000e+00 1417.0
7 TraesCS2A01G056100 chr2D 88.763 1059 93 16 3068 4118 22123779 22124819 0.000000e+00 1273.0
8 TraesCS2A01G056100 chr2D 87.593 806 84 13 905 1697 22155168 22155970 0.000000e+00 920.0
9 TraesCS2A01G056100 chr2D 81.310 1145 181 19 2266 3396 22145329 22146454 0.000000e+00 898.0
10 TraesCS2A01G056100 chr2D 80.823 1142 181 23 2265 3394 22156135 22157250 0.000000e+00 861.0
11 TraesCS2A01G056100 chr2D 86.898 664 75 7 1040 1697 22144341 22144998 0.000000e+00 734.0
12 TraesCS2A01G056100 chr2D 79.237 891 173 10 2265 3147 21554602 21553716 9.940000e-171 610.0
13 TraesCS2A01G056100 chr2D 82.628 662 106 6 1038 1693 21555904 21555246 1.010000e-160 577.0
14 TraesCS2A01G056100 chr2D 96.330 109 4 0 493 601 22119082 22119190 3.320000e-41 180.0
15 TraesCS2A01G056100 chr2D 92.683 123 9 0 1839 1961 22120400 22120522 1.200000e-40 178.0
16 TraesCS2A01G056100 chr2D 96.875 64 1 1 828 890 22119236 22119299 5.720000e-19 106.0
17 TraesCS2A01G056100 chr5D 88.754 987 82 13 827 1800 75913366 75912396 0.000000e+00 1181.0
18 TraesCS2A01G056100 chr5D 88.448 554 41 5 2448 3000 75761037 75760506 0.000000e+00 647.0
19 TraesCS2A01G056100 chr5D 86.503 163 16 4 24 186 75916238 75916082 1.550000e-39 174.0
20 TraesCS2A01G056100 chr5D 91.379 116 10 0 596 711 75915940 75915825 4.330000e-35 159.0
21 TraesCS2A01G056100 chr5D 91.892 111 9 0 718 828 75915140 75915030 5.600000e-34 156.0
22 TraesCS2A01G056100 chr5D 95.775 71 3 0 520 590 75916042 75915972 9.500000e-22 115.0
23 TraesCS2A01G056100 chr5D 87.500 96 12 0 1864 1959 75912394 75912299 1.230000e-20 111.0
24 TraesCS2A01G056100 chr2B 81.754 1129 170 20 2265 3389 35276759 35277855 0.000000e+00 911.0
25 TraesCS2A01G056100 chr2B 81.373 1122 175 19 2282 3397 35284187 35285280 0.000000e+00 883.0
26 TraesCS2A01G056100 chr2B 80.500 1041 181 12 2430 3465 35309193 35310216 0.000000e+00 778.0
27 TraesCS2A01G056100 chr2B 88.468 555 61 1 1291 1845 35139198 35139749 0.000000e+00 667.0
28 TraesCS2A01G056100 chr2B 81.559 667 108 12 1035 1692 34420718 34420058 1.710000e-148 536.0
29 TraesCS2A01G056100 chr2B 88.647 414 45 1 2144 2555 35138057 35138470 1.740000e-138 503.0
30 TraesCS2A01G056100 chr2B 82.122 509 54 25 879 1373 35134666 35135151 6.510000e-108 401.0
31 TraesCS2A01G056100 chr5A 85.062 810 92 16 2448 3256 71233063 71232282 0.000000e+00 798.0
32 TraesCS2A01G056100 chr5A 94.817 328 14 3 176 503 533379701 533380025 3.730000e-140 508.0
33 TraesCS2A01G056100 chr5A 95.298 319 14 1 178 496 660449812 660449495 4.830000e-139 505.0
34 TraesCS2A01G056100 chr5A 95.016 321 15 1 177 497 258038588 258038269 1.740000e-138 503.0
35 TraesCS2A01G056100 chr5A 93.713 334 17 3 179 510 350901560 350901229 8.080000e-137 497.0
36 TraesCS2A01G056100 chr5A 88.710 186 14 6 1 186 71362439 71362261 1.960000e-53 220.0
37 TraesCS2A01G056100 chr5A 88.652 141 12 3 708 845 71361323 71361184 7.190000e-38 169.0
38 TraesCS2A01G056100 chr5A 94.366 71 4 0 520 590 71362221 71362151 4.420000e-20 110.0
39 TraesCS2A01G056100 chr5A 95.000 40 2 0 1958 1997 313600303 313600342 3.490000e-06 63.9
40 TraesCS2A01G056100 chr6D 92.797 472 34 0 1101 1572 29985847 29985376 0.000000e+00 684.0
41 TraesCS2A01G056100 chr6D 95.000 40 2 0 1957 1996 420956354 420956315 3.490000e-06 63.9
42 TraesCS2A01G056100 chr7D 92.585 472 35 0 1101 1572 403146433 403145962 0.000000e+00 678.0
43 TraesCS2A01G056100 chr5B 89.464 522 43 5 827 1347 84623853 84623343 0.000000e+00 649.0
44 TraesCS2A01G056100 chr5B 78.535 969 182 19 2265 3223 276669353 276670305 7.690000e-172 614.0
45 TraesCS2A01G056100 chr5B 78.659 328 39 21 528 828 84624237 84623914 5.520000e-44 189.0
46 TraesCS2A01G056100 chr5B 94.872 39 2 0 1957 1995 511601798 511601836 1.260000e-05 62.1
47 TraesCS2A01G056100 chr6B 96.154 312 11 1 184 495 547713957 547713647 3.730000e-140 508.0
48 TraesCS2A01G056100 chr1A 95.342 322 12 2 174 493 382256243 382255923 3.730000e-140 508.0
49 TraesCS2A01G056100 chr3A 94.737 323 16 1 175 497 451653208 451653529 6.240000e-138 501.0
50 TraesCS2A01G056100 chr3A 97.436 39 1 0 1957 1995 287329536 287329574 2.700000e-07 67.6
51 TraesCS2A01G056100 chr7A 95.527 313 13 1 184 496 593960930 593960619 2.250000e-137 499.0
52 TraesCS2A01G056100 chr7A 93.617 47 2 1 1959 2004 189506637 189506683 7.500000e-08 69.4
53 TraesCS2A01G056100 chr7B 95.238 42 2 0 1956 1997 94635501 94635542 2.700000e-07 67.6
54 TraesCS2A01G056100 chr7B 94.737 38 2 0 520 557 681617807 681617844 4.520000e-05 60.2
55 TraesCS2A01G056100 chr4D 95.000 40 1 1 1950 1988 430891321 430891282 1.260000e-05 62.1
56 TraesCS2A01G056100 chr4B 92.500 40 3 0 1958 1997 453235557 453235518 1.620000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G056100 chr2A 23957801 23961983 4182 False 7725.000000 7725 100.000000 1 4183 1 chr2A.!!$F2 4182
1 TraesCS2A01G056100 chr2A 23971585 23972681 1096 False 859.000000 859 80.969000 2265 3394 1 chr2A.!!$F3 1129
2 TraesCS2A01G056100 chr2A 22572904 22573570 666 True 608.000000 608 83.284000 1038 1701 1 chr2A.!!$R1 663
3 TraesCS2A01G056100 chr2D 22119082 22124819 5737 False 1028.666667 3018 93.633167 493 4118 6 chr2D.!!$F1 3625
4 TraesCS2A01G056100 chr2D 22155168 22157250 2082 False 890.500000 920 84.208000 905 3394 2 chr2D.!!$F3 2489
5 TraesCS2A01G056100 chr2D 22144341 22146454 2113 False 816.000000 898 84.104000 1040 3396 2 chr2D.!!$F2 2356
6 TraesCS2A01G056100 chr2D 21553716 21555904 2188 True 593.500000 610 80.932500 1038 3147 2 chr2D.!!$R1 2109
7 TraesCS2A01G056100 chr5D 75760506 75761037 531 True 647.000000 647 88.448000 2448 3000 1 chr5D.!!$R1 552
8 TraesCS2A01G056100 chr5D 75912299 75916238 3939 True 316.000000 1181 90.300500 24 1959 6 chr5D.!!$R2 1935
9 TraesCS2A01G056100 chr2B 35276759 35277855 1096 False 911.000000 911 81.754000 2265 3389 1 chr2B.!!$F1 1124
10 TraesCS2A01G056100 chr2B 35284187 35285280 1093 False 883.000000 883 81.373000 2282 3397 1 chr2B.!!$F2 1115
11 TraesCS2A01G056100 chr2B 35309193 35310216 1023 False 778.000000 778 80.500000 2430 3465 1 chr2B.!!$F3 1035
12 TraesCS2A01G056100 chr2B 34420058 34420718 660 True 536.000000 536 81.559000 1035 1692 1 chr2B.!!$R1 657
13 TraesCS2A01G056100 chr2B 35134666 35139749 5083 False 523.666667 667 86.412333 879 2555 3 chr2B.!!$F4 1676
14 TraesCS2A01G056100 chr5A 71232282 71233063 781 True 798.000000 798 85.062000 2448 3256 1 chr5A.!!$R1 808
15 TraesCS2A01G056100 chr5B 276669353 276670305 952 False 614.000000 614 78.535000 2265 3223 1 chr5B.!!$F1 958
16 TraesCS2A01G056100 chr5B 84623343 84624237 894 True 419.000000 649 84.061500 528 1347 2 chr5B.!!$R1 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
995 3406 0.036732 CCCACCAAGCTGAAGTGCTA 59.963 55.000 5.69 0.0 43.24 3.49 F
1636 4057 1.079127 ATTGAGCAGTTCGACGGGG 60.079 57.895 0.00 0.0 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2381 5379 0.775861 GCCGCGTCATCAACAAAAAC 59.224 50.000 4.92 0.0 0.0 2.43 R
3629 9208 1.137086 AGCGCGATTAAGGAGACACAT 59.863 47.619 12.10 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 7.334421 ACATAAAACACATACAACTAGCCTCTG 59.666 37.037 0.00 0.00 0.00 3.35
71 72 3.252974 ACACATACAACTAGCCTCTGC 57.747 47.619 0.00 0.00 37.95 4.26
80 81 6.485830 ACAACTAGCCTCTGCATAGATAAA 57.514 37.500 0.00 0.00 41.13 1.40
109 110 3.003275 ACGATCAACACCAATTCACACAC 59.997 43.478 0.00 0.00 0.00 3.82
110 111 3.003171 CGATCAACACCAATTCACACACA 59.997 43.478 0.00 0.00 0.00 3.72
113 114 3.119673 TCAACACCAATTCACACACACAC 60.120 43.478 0.00 0.00 0.00 3.82
114 115 2.441410 ACACCAATTCACACACACACA 58.559 42.857 0.00 0.00 0.00 3.72
115 116 2.822561 ACACCAATTCACACACACACAA 59.177 40.909 0.00 0.00 0.00 3.33
116 117 3.256879 ACACCAATTCACACACACACAAA 59.743 39.130 0.00 0.00 0.00 2.83
155 156 7.305648 GCAACTAGCAAAATCAAATAAGATCGC 60.306 37.037 0.00 0.00 44.79 4.58
159 160 4.207841 GCAAAATCAAATAAGATCGCAGCC 59.792 41.667 0.00 0.00 0.00 4.85
198 199 4.404185 AAAAGATAAGGCCTCCTTTGGT 57.596 40.909 21.21 9.66 41.69 3.67
199 200 4.404185 AAAGATAAGGCCTCCTTTGGTT 57.596 40.909 20.34 1.35 41.69 3.67
200 201 4.404185 AAGATAAGGCCTCCTTTGGTTT 57.596 40.909 5.23 0.00 41.69 3.27
201 202 5.530176 AAGATAAGGCCTCCTTTGGTTTA 57.470 39.130 5.23 0.00 41.69 2.01
202 203 5.530176 AGATAAGGCCTCCTTTGGTTTAA 57.470 39.130 5.23 0.00 41.69 1.52
203 204 5.899278 AGATAAGGCCTCCTTTGGTTTAAA 58.101 37.500 5.23 0.00 41.69 1.52
204 205 5.952347 AGATAAGGCCTCCTTTGGTTTAAAG 59.048 40.000 5.23 0.00 41.69 1.85
272 273 7.581213 TTTTCCTTTAGAGCACTTTGATTCA 57.419 32.000 0.00 0.00 0.00 2.57
273 274 7.765695 TTTCCTTTAGAGCACTTTGATTCAT 57.234 32.000 0.00 0.00 0.00 2.57
274 275 8.862325 TTTCCTTTAGAGCACTTTGATTCATA 57.138 30.769 0.00 0.00 0.00 2.15
275 276 8.498054 TTCCTTTAGAGCACTTTGATTCATAG 57.502 34.615 2.95 2.95 0.00 2.23
276 277 7.050377 TCCTTTAGAGCACTTTGATTCATAGG 58.950 38.462 8.67 0.00 0.00 2.57
277 278 7.050377 CCTTTAGAGCACTTTGATTCATAGGA 58.950 38.462 8.67 0.00 0.00 2.94
278 279 7.554118 CCTTTAGAGCACTTTGATTCATAGGAA 59.446 37.037 8.67 0.00 37.45 3.36
279 280 9.118300 CTTTAGAGCACTTTGATTCATAGGAAT 57.882 33.333 1.48 1.48 46.27 3.01
280 281 6.939132 AGAGCACTTTGATTCATAGGAATG 57.061 37.500 7.46 0.00 43.69 2.67
281 282 5.826737 AGAGCACTTTGATTCATAGGAATGG 59.173 40.000 7.46 0.00 43.69 3.16
282 283 5.759059 AGCACTTTGATTCATAGGAATGGA 58.241 37.500 7.46 0.00 43.69 3.41
283 284 6.371278 AGCACTTTGATTCATAGGAATGGAT 58.629 36.000 7.46 0.00 43.69 3.41
284 285 6.837568 AGCACTTTGATTCATAGGAATGGATT 59.162 34.615 7.46 0.00 43.69 3.01
285 286 7.343833 AGCACTTTGATTCATAGGAATGGATTT 59.656 33.333 7.46 0.00 43.69 2.17
286 287 7.650903 GCACTTTGATTCATAGGAATGGATTTC 59.349 37.037 7.46 0.00 43.69 2.17
287 288 8.910944 CACTTTGATTCATAGGAATGGATTTCT 58.089 33.333 7.46 0.00 43.69 2.52
320 321 4.503714 GGATTGGTTCCTATCCTTCACA 57.496 45.455 19.71 0.00 41.78 3.58
321 322 5.053978 GGATTGGTTCCTATCCTTCACAT 57.946 43.478 19.71 0.00 41.78 3.21
322 323 5.449553 GGATTGGTTCCTATCCTTCACATT 58.550 41.667 19.71 0.00 41.78 2.71
323 324 5.893824 GGATTGGTTCCTATCCTTCACATTT 59.106 40.000 19.71 0.00 41.78 2.32
324 325 6.039829 GGATTGGTTCCTATCCTTCACATTTC 59.960 42.308 19.71 0.00 41.78 2.17
325 326 4.855340 TGGTTCCTATCCTTCACATTTCC 58.145 43.478 0.00 0.00 0.00 3.13
326 327 4.540099 TGGTTCCTATCCTTCACATTTCCT 59.460 41.667 0.00 0.00 0.00 3.36
327 328 5.729229 TGGTTCCTATCCTTCACATTTCCTA 59.271 40.000 0.00 0.00 0.00 2.94
328 329 6.126768 TGGTTCCTATCCTTCACATTTCCTAG 60.127 42.308 0.00 0.00 0.00 3.02
329 330 6.292150 GTTCCTATCCTTCACATTTCCTAGG 58.708 44.000 0.82 0.82 0.00 3.02
330 331 5.788430 TCCTATCCTTCACATTTCCTAGGA 58.212 41.667 7.62 7.62 39.21 2.94
331 332 6.209774 TCCTATCCTTCACATTTCCTAGGAA 58.790 40.000 20.72 20.72 38.42 3.36
332 333 6.676632 TCCTATCCTTCACATTTCCTAGGAAA 59.323 38.462 33.59 33.59 46.37 3.13
333 334 7.183839 TCCTATCCTTCACATTTCCTAGGAAAA 59.816 37.037 34.72 19.40 45.60 2.29
334 335 8.001292 CCTATCCTTCACATTTCCTAGGAAAAT 58.999 37.037 34.72 24.62 45.60 1.82
337 338 9.768215 ATCCTTCACATTTCCTAGGAAAATAAA 57.232 29.630 34.72 24.39 45.60 1.40
338 339 9.594936 TCCTTCACATTTCCTAGGAAAATAAAA 57.405 29.630 34.72 24.67 45.60 1.52
360 361 7.765695 AAAAAGAGCATAGACTCAATGGAAA 57.234 32.000 0.00 0.00 39.26 3.13
361 362 7.765695 AAAAGAGCATAGACTCAATGGAAAA 57.234 32.000 0.00 0.00 39.26 2.29
362 363 7.765695 AAAGAGCATAGACTCAATGGAAAAA 57.234 32.000 0.00 0.00 39.26 1.94
363 364 7.951347 AAGAGCATAGACTCAATGGAAAAAT 57.049 32.000 0.00 0.00 39.26 1.82
364 365 7.951347 AGAGCATAGACTCAATGGAAAAATT 57.049 32.000 0.00 0.00 39.26 1.82
365 366 7.994194 AGAGCATAGACTCAATGGAAAAATTC 58.006 34.615 0.00 0.00 39.26 2.17
366 367 7.067981 AGAGCATAGACTCAATGGAAAAATTCC 59.932 37.037 2.12 2.12 43.60 3.01
367 368 7.067981 GAGCATAGACTCAATGGAAAAATTCCT 59.932 37.037 10.28 0.00 42.21 3.36
378 379 5.984233 GGAAAAATTCCTTTGGTGTCAAC 57.016 39.130 1.86 0.00 46.57 3.18
379 380 4.814234 GGAAAAATTCCTTTGGTGTCAACC 59.186 41.667 1.86 0.00 46.57 3.77
397 398 5.841810 TCAACCAAATGACATCTTGTTTCC 58.158 37.500 0.00 0.00 0.00 3.13
398 399 5.598005 TCAACCAAATGACATCTTGTTTCCT 59.402 36.000 0.00 0.00 0.00 3.36
399 400 6.775142 TCAACCAAATGACATCTTGTTTCCTA 59.225 34.615 0.00 0.00 0.00 2.94
400 401 7.451255 TCAACCAAATGACATCTTGTTTCCTAT 59.549 33.333 0.00 0.00 0.00 2.57
401 402 7.781324 ACCAAATGACATCTTGTTTCCTATT 57.219 32.000 0.00 0.00 0.00 1.73
402 403 7.830739 ACCAAATGACATCTTGTTTCCTATTC 58.169 34.615 0.00 0.00 0.00 1.75
403 404 7.093771 ACCAAATGACATCTTGTTTCCTATTCC 60.094 37.037 0.00 0.00 0.00 3.01
404 405 7.123247 CCAAATGACATCTTGTTTCCTATTCCT 59.877 37.037 0.00 0.00 0.00 3.36
405 406 9.177608 CAAATGACATCTTGTTTCCTATTCCTA 57.822 33.333 0.00 0.00 0.00 2.94
406 407 8.738645 AATGACATCTTGTTTCCTATTCCTAC 57.261 34.615 0.00 0.00 0.00 3.18
407 408 7.496346 TGACATCTTGTTTCCTATTCCTACT 57.504 36.000 0.00 0.00 0.00 2.57
408 409 7.556844 TGACATCTTGTTTCCTATTCCTACTC 58.443 38.462 0.00 0.00 0.00 2.59
409 410 7.180229 TGACATCTTGTTTCCTATTCCTACTCA 59.820 37.037 0.00 0.00 0.00 3.41
410 411 8.095452 ACATCTTGTTTCCTATTCCTACTCAT 57.905 34.615 0.00 0.00 0.00 2.90
411 412 9.213777 ACATCTTGTTTCCTATTCCTACTCATA 57.786 33.333 0.00 0.00 0.00 2.15
412 413 9.703892 CATCTTGTTTCCTATTCCTACTCATAG 57.296 37.037 0.00 0.00 0.00 2.23
429 430 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
430 431 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
431 432 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
432 433 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
433 434 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
434 435 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
443 444 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
444 445 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
445 446 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
446 447 8.899427 ATACATGTCATCTCATTTCCTACAAG 57.101 34.615 0.00 0.00 0.00 3.16
447 448 6.950842 ACATGTCATCTCATTTCCTACAAGA 58.049 36.000 0.00 0.00 0.00 3.02
448 449 7.571919 ACATGTCATCTCATTTCCTACAAGAT 58.428 34.615 0.00 0.00 0.00 2.40
449 450 8.051535 ACATGTCATCTCATTTCCTACAAGATT 58.948 33.333 0.00 0.00 0.00 2.40
450 451 8.557864 CATGTCATCTCATTTCCTACAAGATTC 58.442 37.037 0.00 0.00 0.00 2.52
451 452 7.050377 TGTCATCTCATTTCCTACAAGATTCC 58.950 38.462 0.00 0.00 0.00 3.01
452 453 7.092712 TGTCATCTCATTTCCTACAAGATTCCT 60.093 37.037 0.00 0.00 0.00 3.36
453 454 8.424918 GTCATCTCATTTCCTACAAGATTCCTA 58.575 37.037 0.00 0.00 0.00 2.94
454 455 9.163894 TCATCTCATTTCCTACAAGATTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
455 456 9.790344 CATCTCATTTCCTACAAGATTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
457 458 9.838339 TCTCATTTCCTACAAGATTCCTATTTC 57.162 33.333 0.00 0.00 0.00 2.17
458 459 9.844257 CTCATTTCCTACAAGATTCCTATTTCT 57.156 33.333 0.00 0.00 0.00 2.52
489 490 8.930846 AATCATATCCTATGAACCAAAAGAGG 57.069 34.615 1.28 0.00 0.00 3.69
490 491 6.299141 TCATATCCTATGAACCAAAAGAGGC 58.701 40.000 0.00 0.00 0.00 4.70
491 492 3.366052 TCCTATGAACCAAAAGAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
593 607 2.048316 CCAACAACAATGCCCCGC 60.048 61.111 0.00 0.00 0.00 6.13
639 680 4.610680 CGAAGAACAAGTCCGAACAAATCC 60.611 45.833 0.00 0.00 0.00 3.01
679 720 2.623889 CTGATACCAGAACCTAGTCCGG 59.376 54.545 0.00 0.00 43.02 5.14
692 733 4.382320 TCCGGGCTGTTGGCGTAC 62.382 66.667 0.00 0.00 42.94 3.67
698 739 0.109319 GGCTGTTGGCGTACAATTGG 60.109 55.000 10.83 0.00 41.95 3.16
699 740 0.878416 GCTGTTGGCGTACAATTGGA 59.122 50.000 10.83 0.00 41.95 3.53
728 1447 5.066893 CGGTAGTTAGTGGTGAGCTACATTA 59.933 44.000 0.00 0.00 35.15 1.90
733 1452 7.042335 AGTTAGTGGTGAGCTACATTACATTC 58.958 38.462 0.00 0.00 0.00 2.67
743 1462 7.549134 TGAGCTACATTACATTCTAAACCAGTG 59.451 37.037 0.00 0.00 0.00 3.66
750 1469 9.046296 CATTACATTCTAAACCAGTGGTATCTC 57.954 37.037 17.09 0.00 33.12 2.75
780 1499 1.369692 CCGCTGTTGGTGTAGGACA 59.630 57.895 0.00 0.00 0.00 4.02
795 1514 3.170791 AGGACAAGTGTCATCGCATAG 57.829 47.619 13.21 0.00 46.47 2.23
797 1516 2.604914 GGACAAGTGTCATCGCATAGTG 59.395 50.000 13.21 0.00 46.47 2.74
804 1523 0.389025 TCATCGCATAGTGACCGCAT 59.611 50.000 0.00 0.00 0.00 4.73
828 1547 4.504596 TGATGGCGATGGGGTGGC 62.505 66.667 0.00 0.00 0.00 5.01
829 1548 4.195334 GATGGCGATGGGGTGGCT 62.195 66.667 0.00 0.00 0.00 4.75
871 3256 2.398840 TTTCCATCGCCACCGGACAA 62.399 55.000 9.46 0.00 34.56 3.18
962 3358 7.678927 GCCTATAAAATCCACCGAAAGAAAGAC 60.679 40.741 0.00 0.00 0.00 3.01
995 3406 0.036732 CCCACCAAGCTGAAGTGCTA 59.963 55.000 5.69 0.00 43.24 3.49
997 3408 1.537202 CCACCAAGCTGAAGTGCTAAC 59.463 52.381 5.69 0.00 43.24 2.34
1293 3707 1.303888 TGCCGAGTACTTCTCCCGT 60.304 57.895 0.00 0.00 39.84 5.28
1636 4057 1.079127 ATTGAGCAGTTCGACGGGG 60.079 57.895 0.00 0.00 0.00 5.73
1680 4101 2.159920 CGTCAACTCTTTCAGCGACATG 60.160 50.000 0.00 0.00 31.03 3.21
1720 4141 1.805945 CTCGTACTTGCGTGCTCCC 60.806 63.158 0.00 0.00 0.00 4.30
1751 4182 8.649973 TCAAACCGTTTGTTTTGCTTATTTAT 57.350 26.923 20.71 0.00 44.80 1.40
1783 4218 6.445357 TTGGTCTGTTAAACTGGTTTTCTC 57.555 37.500 4.01 0.00 34.23 2.87
1817 4252 4.394729 TGATAAAACCACAAGTGAGGTCC 58.605 43.478 0.94 0.00 38.05 4.46
1818 4253 2.818751 AAAACCACAAGTGAGGTCCA 57.181 45.000 0.94 0.00 38.05 4.02
1930 4923 9.616634 GTTTATATGACATGCACATATTCAAGG 57.383 33.333 22.24 0.00 40.17 3.61
1936 4929 5.126067 ACATGCACATATTCAAGGTCTACC 58.874 41.667 0.00 0.00 0.00 3.18
1961 4954 9.099454 CCTTGACCATCACTAAAACTAATACTC 57.901 37.037 0.00 0.00 0.00 2.59
1962 4955 9.099454 CTTGACCATCACTAAAACTAATACTCC 57.901 37.037 0.00 0.00 0.00 3.85
1963 4956 7.562135 TGACCATCACTAAAACTAATACTCCC 58.438 38.462 0.00 0.00 0.00 4.30
1964 4957 7.402071 TGACCATCACTAAAACTAATACTCCCT 59.598 37.037 0.00 0.00 0.00 4.20
1965 4958 7.793036 ACCATCACTAAAACTAATACTCCCTC 58.207 38.462 0.00 0.00 0.00 4.30
1966 4959 7.624077 ACCATCACTAAAACTAATACTCCCTCT 59.376 37.037 0.00 0.00 0.00 3.69
1967 4960 7.928706 CCATCACTAAAACTAATACTCCCTCTG 59.071 40.741 0.00 0.00 0.00 3.35
1968 4961 8.478877 CATCACTAAAACTAATACTCCCTCTGT 58.521 37.037 0.00 0.00 0.00 3.41
1969 4962 9.710818 ATCACTAAAACTAATACTCCCTCTGTA 57.289 33.333 0.00 0.00 0.00 2.74
1970 4963 9.537852 TCACTAAAACTAATACTCCCTCTGTAA 57.462 33.333 0.00 0.00 0.00 2.41
1977 4970 8.890410 ACTAATACTCCCTCTGTAAACTAACA 57.110 34.615 0.00 0.00 0.00 2.41
1978 4971 9.490083 ACTAATACTCCCTCTGTAAACTAACAT 57.510 33.333 0.00 0.00 0.00 2.71
1982 4975 9.710818 ATACTCCCTCTGTAAACTAACATAAGA 57.289 33.333 0.00 0.00 0.00 2.10
1983 4976 8.068892 ACTCCCTCTGTAAACTAACATAAGAG 57.931 38.462 0.00 0.00 0.00 2.85
1984 4977 7.674772 ACTCCCTCTGTAAACTAACATAAGAGT 59.325 37.037 0.00 0.00 0.00 3.24
1985 4978 7.837863 TCCCTCTGTAAACTAACATAAGAGTG 58.162 38.462 0.00 0.00 0.00 3.51
1986 4979 7.453752 TCCCTCTGTAAACTAACATAAGAGTGT 59.546 37.037 0.00 0.00 0.00 3.55
1987 4980 8.095169 CCCTCTGTAAACTAACATAAGAGTGTT 58.905 37.037 0.00 0.00 44.09 3.32
1988 4981 9.490379 CCTCTGTAAACTAACATAAGAGTGTTT 57.510 33.333 0.00 0.00 42.08 2.83
2008 5001 9.930693 AGTGTTTAGATCACTCCTTAGTTTAAG 57.069 33.333 0.00 0.00 41.52 1.85
2009 5002 9.708092 GTGTTTAGATCACTCCTTAGTTTAAGT 57.292 33.333 0.00 0.00 31.97 2.24
2057 5050 5.840715 TGTAATACCATACGAAACGGCATA 58.159 37.500 0.00 0.00 0.00 3.14
2061 5054 3.602483 ACCATACGAAACGGCATAGTTT 58.398 40.909 4.26 4.26 45.85 2.66
2073 5066 4.973663 ACGGCATAGTTTGAAACTTTTTCG 59.026 37.500 16.49 16.17 42.81 3.46
2078 5071 7.359181 GGCATAGTTTGAAACTTTTTCGGAATG 60.359 37.037 16.49 11.51 42.81 2.67
2086 5079 3.089284 ACTTTTTCGGAATGGTGGATCC 58.911 45.455 4.20 4.20 0.00 3.36
2124 5121 8.806429 TTTGTGTCATATGAGTCATATTTGGT 57.194 30.769 20.81 0.40 35.18 3.67
2129 5126 7.936847 TGTCATATGAGTCATATTTGGTTACCC 59.063 37.037 20.81 4.58 35.18 3.69
2173 5170 8.732746 ATATTTGGTTACTTACACTGATGGTC 57.267 34.615 0.00 0.00 0.00 4.02
2205 5202 7.217200 AGTCTTACAATATGTGTGTGACTTGT 58.783 34.615 14.29 0.00 44.48 3.16
2258 5256 7.255569 AGTAATTTTGATCGTCGACACTATGA 58.744 34.615 17.16 4.35 0.00 2.15
2288 5286 3.209410 CAGGAGGTGGATTACATGAAGC 58.791 50.000 0.00 0.00 0.00 3.86
2381 5379 5.008217 TCCAACAAGTCTTATGGTTTCAACG 59.992 40.000 13.55 0.00 34.50 4.10
3006 8584 6.396450 GGATAAGAAGGACGAGTACAAAAGT 58.604 40.000 0.00 0.00 0.00 2.66
3021 8599 6.927381 AGTACAAAAGTAATGCTACGAAGTGT 59.073 34.615 0.00 0.00 45.73 3.55
3124 8702 7.788846 CGTCAATTTAAAGTTTCAACAATGCAG 59.211 33.333 0.00 0.00 0.00 4.41
3137 8715 6.680810 TCAACAATGCAGTCTTTATTTCAGG 58.319 36.000 0.00 0.00 0.00 3.86
3212 8791 6.838090 TGGCATTTTCCATATGTAATTGGAGA 59.162 34.615 1.24 0.00 42.73 3.71
3228 8807 3.027412 TGGAGAGCTATCTTCTCACCAC 58.973 50.000 8.50 0.00 43.23 4.16
3258 8837 7.206981 AGGATGCTGAAATTTTCATATACCG 57.793 36.000 12.04 1.52 39.30 4.02
3345 8924 6.707290 TGTGGACTGCAACTATTACTAACAT 58.293 36.000 0.00 0.00 0.00 2.71
3353 8932 8.712285 TGCAACTATTACTAACATGTAACTCC 57.288 34.615 0.00 0.00 35.56 3.85
3389 8968 5.547465 TGGTATGTTCTTAGTGTTCCACAG 58.453 41.667 0.00 0.00 36.74 3.66
3404 8983 1.339610 CCACAGGGAAAAACAATCGCA 59.660 47.619 0.00 0.00 35.59 5.10
3428 9007 6.531240 CACATGTTAAAGCAAGCCGATTATTT 59.469 34.615 0.00 0.00 0.00 1.40
3434 9013 9.170584 GTTAAAGCAAGCCGATTATTTTCTATC 57.829 33.333 0.00 0.00 0.00 2.08
3487 9066 5.593679 TTACTCCTACTAGCACAATGTCC 57.406 43.478 0.00 0.00 0.00 4.02
3495 9074 4.513275 CACAATGTCCGTGCGTTG 57.487 55.556 6.80 6.80 40.24 4.10
3572 9151 4.295857 TGATGGCATGTTTTCATCGATG 57.704 40.909 19.61 19.61 39.89 3.84
3620 9199 5.477984 CCATTCCTTTCCTTCTCAACAATCA 59.522 40.000 0.00 0.00 0.00 2.57
3622 9201 7.310237 CCATTCCTTTCCTTCTCAACAATCATT 60.310 37.037 0.00 0.00 0.00 2.57
3623 9202 6.579666 TCCTTTCCTTCTCAACAATCATTG 57.420 37.500 0.00 0.00 0.00 2.82
3625 9204 6.016024 TCCTTTCCTTCTCAACAATCATTGTG 60.016 38.462 3.07 0.00 44.59 3.33
3626 9205 6.239120 CCTTTCCTTCTCAACAATCATTGTGT 60.239 38.462 3.07 0.00 44.59 3.72
3627 9206 5.947228 TCCTTCTCAACAATCATTGTGTC 57.053 39.130 3.07 0.00 44.59 3.67
3628 9207 5.375773 TCCTTCTCAACAATCATTGTGTCA 58.624 37.500 3.07 0.00 44.59 3.58
3629 9208 5.827267 TCCTTCTCAACAATCATTGTGTCAA 59.173 36.000 3.07 0.00 44.59 3.18
3661 9240 1.452953 ATCGCGCTATCGTTCCAGGA 61.453 55.000 5.56 0.00 38.14 3.86
3686 9265 3.813529 AAAGCGACATCTTTCTTTCCG 57.186 42.857 0.00 0.00 31.07 4.30
3692 9271 1.340114 ACATCTTTCTTTCCGCCCCTC 60.340 52.381 0.00 0.00 0.00 4.30
3732 9311 0.250553 TCACCGGTGTGTTTGATCCC 60.251 55.000 32.74 0.00 43.26 3.85
3745 9324 8.141268 GTGTGTTTGATCCCTCTTTTCAAAATA 58.859 33.333 0.00 0.00 40.08 1.40
3761 9340 7.801716 TTCAAAATATGGTACCTCTGCATAC 57.198 36.000 14.36 0.00 0.00 2.39
3775 9354 7.172342 ACCTCTGCATACTATGGTTTTTAACA 58.828 34.615 0.00 0.00 0.00 2.41
3906 9486 6.284475 GCTCTAGCATTATTGTCAGTTCAG 57.716 41.667 0.00 0.00 41.59 3.02
3922 9502 3.990469 AGTTCAGAAGTATGTTGCTCACG 59.010 43.478 0.00 0.00 0.00 4.35
3928 9508 3.671008 AGTATGTTGCTCACGTTACCA 57.329 42.857 0.00 0.00 0.00 3.25
3933 9513 3.322369 TGTTGCTCACGTTACCATAGTG 58.678 45.455 0.00 0.00 37.24 2.74
3942 9522 6.097356 TCACGTTACCATAGTGATCTTGTTC 58.903 40.000 0.00 0.00 39.63 3.18
3944 9524 6.253727 CACGTTACCATAGTGATCTTGTTCTC 59.746 42.308 0.00 0.00 38.06 2.87
3945 9525 5.749109 CGTTACCATAGTGATCTTGTTCTCC 59.251 44.000 0.00 0.00 0.00 3.71
3946 9526 6.627287 CGTTACCATAGTGATCTTGTTCTCCA 60.627 42.308 0.00 0.00 0.00 3.86
3949 9529 5.940470 ACCATAGTGATCTTGTTCTCCAAAC 59.060 40.000 0.00 0.00 31.20 2.93
3951 9531 4.713792 AGTGATCTTGTTCTCCAAACCT 57.286 40.909 0.00 0.00 31.20 3.50
3955 9535 6.381133 AGTGATCTTGTTCTCCAAACCTTTTT 59.619 34.615 0.00 0.00 31.20 1.94
3962 9542 5.584251 TGTTCTCCAAACCTTTTTGCAAATC 59.416 36.000 13.65 0.00 40.84 2.17
3983 9563 5.912149 TCTCTAAAATGGCCCTCATGTAT 57.088 39.130 0.00 0.00 35.99 2.29
3987 9567 2.457813 AATGGCCCTCATGTATTGCA 57.542 45.000 0.00 0.00 35.99 4.08
3996 9576 5.506317 GCCCTCATGTATTGCAATAGTTGAC 60.506 44.000 19.41 10.58 0.00 3.18
3998 9578 5.294306 CCTCATGTATTGCAATAGTTGACGT 59.706 40.000 19.41 8.64 0.00 4.34
4002 9582 8.334632 TCATGTATTGCAATAGTTGACGTATTG 58.665 33.333 19.41 7.06 39.78 1.90
4053 9633 5.036117 ACCAACTGTTAGAGACAACATGT 57.964 39.130 0.00 0.00 37.75 3.21
4090 9670 6.610741 TTACAAACAATGAAAAATGCACCC 57.389 33.333 0.00 0.00 0.00 4.61
4092 9672 4.575645 ACAAACAATGAAAAATGCACCCAG 59.424 37.500 0.00 0.00 0.00 4.45
4097 9677 2.392662 TGAAAAATGCACCCAGTGGAA 58.607 42.857 11.95 0.00 37.44 3.53
4118 9698 5.163953 GGAATGCCAATAGATGACGTATTCG 60.164 44.000 0.00 0.00 43.34 3.34
4120 9700 5.134202 TGCCAATAGATGACGTATTCGAT 57.866 39.130 0.00 0.00 40.62 3.59
4121 9701 6.262193 TGCCAATAGATGACGTATTCGATA 57.738 37.500 0.00 0.00 40.62 2.92
4125 9705 7.166638 GCCAATAGATGACGTATTCGATATCTG 59.833 40.741 18.05 8.48 40.34 2.90
4126 9706 8.184848 CCAATAGATGACGTATTCGATATCTGT 58.815 37.037 18.05 12.47 40.34 3.41
4130 9742 5.358298 TGACGTATTCGATATCTGTGAGG 57.642 43.478 0.00 0.00 40.62 3.86
4155 9767 6.844279 GCAATGTGTATTACGTAGTACAATGC 59.156 38.462 28.33 28.33 45.76 3.56
4158 9770 6.575267 TGTGTATTACGTAGTACAATGCCAT 58.425 36.000 26.48 3.80 45.76 4.40
4160 9772 8.196103 TGTGTATTACGTAGTACAATGCCATTA 58.804 33.333 26.48 4.27 45.76 1.90
4161 9773 9.199982 GTGTATTACGTAGTACAATGCCATTAT 57.800 33.333 26.48 2.74 45.76 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.567169 TGCAGAGGCTAGTTGTATGTGT 59.433 45.455 0.00 0.00 41.91 3.72
52 53 3.251479 TGCAGAGGCTAGTTGTATGTG 57.749 47.619 0.00 0.00 41.91 3.21
53 54 4.895889 TCTATGCAGAGGCTAGTTGTATGT 59.104 41.667 8.78 0.00 41.91 2.29
56 57 7.597288 TTTATCTATGCAGAGGCTAGTTGTA 57.403 36.000 8.78 0.00 41.91 2.41
70 71 5.989249 TGATCGTGTGCATTTTATCTATGC 58.011 37.500 0.00 0.00 46.63 3.14
71 72 7.374228 GTGTTGATCGTGTGCATTTTATCTATG 59.626 37.037 0.00 0.00 0.00 2.23
80 81 1.603456 TGGTGTTGATCGTGTGCATT 58.397 45.000 0.00 0.00 0.00 3.56
84 85 3.003171 TGTGAATTGGTGTTGATCGTGTG 59.997 43.478 0.00 0.00 0.00 3.82
89 90 4.202000 TGTGTGTGTGAATTGGTGTTGATC 60.202 41.667 0.00 0.00 0.00 2.92
116 117 4.204012 TGCTAGTTGCTAGTGTGGTTTTT 58.796 39.130 0.00 0.00 43.37 1.94
178 179 4.404185 AACCAAAGGAGGCCTTATCTTT 57.596 40.909 6.77 14.65 43.92 2.52
180 181 5.530176 TTAAACCAAAGGAGGCCTTATCT 57.470 39.130 6.77 2.03 43.92 1.98
181 182 6.208988 CTTTAAACCAAAGGAGGCCTTATC 57.791 41.667 6.77 0.00 43.92 1.75
247 248 8.006298 TGAATCAAAGTGCTCTAAAGGAAAAA 57.994 30.769 0.00 0.00 0.00 1.94
248 249 7.581213 TGAATCAAAGTGCTCTAAAGGAAAA 57.419 32.000 0.00 0.00 0.00 2.29
249 250 7.765695 ATGAATCAAAGTGCTCTAAAGGAAA 57.234 32.000 0.00 0.00 0.00 3.13
250 251 7.554118 CCTATGAATCAAAGTGCTCTAAAGGAA 59.446 37.037 0.00 0.00 0.00 3.36
251 252 7.050377 CCTATGAATCAAAGTGCTCTAAAGGA 58.950 38.462 0.00 0.00 0.00 3.36
252 253 7.050377 TCCTATGAATCAAAGTGCTCTAAAGG 58.950 38.462 0.00 0.00 0.00 3.11
253 254 8.498054 TTCCTATGAATCAAAGTGCTCTAAAG 57.502 34.615 0.00 0.00 0.00 1.85
254 255 8.896744 CATTCCTATGAATCAAAGTGCTCTAAA 58.103 33.333 0.00 0.00 39.20 1.85
255 256 7.500227 CCATTCCTATGAATCAAAGTGCTCTAA 59.500 37.037 0.00 0.00 39.20 2.10
256 257 6.994496 CCATTCCTATGAATCAAAGTGCTCTA 59.006 38.462 0.00 0.00 39.20 2.43
257 258 5.826737 CCATTCCTATGAATCAAAGTGCTCT 59.173 40.000 0.00 0.00 39.20 4.09
258 259 5.824624 TCCATTCCTATGAATCAAAGTGCTC 59.175 40.000 0.00 0.00 39.20 4.26
259 260 5.759059 TCCATTCCTATGAATCAAAGTGCT 58.241 37.500 0.00 0.00 39.20 4.40
260 261 6.645790 ATCCATTCCTATGAATCAAAGTGC 57.354 37.500 0.00 0.00 39.20 4.40
261 262 8.910944 AGAAATCCATTCCTATGAATCAAAGTG 58.089 33.333 0.00 0.00 39.20 3.16
266 267 9.745018 GGAATAGAAATCCATTCCTATGAATCA 57.255 33.333 11.80 0.00 44.56 2.57
300 301 6.039829 GGAAATGTGAAGGATAGGAACCAATC 59.960 42.308 0.00 0.00 0.00 2.67
301 302 5.893824 GGAAATGTGAAGGATAGGAACCAAT 59.106 40.000 0.00 0.00 0.00 3.16
302 303 5.015178 AGGAAATGTGAAGGATAGGAACCAA 59.985 40.000 0.00 0.00 0.00 3.67
303 304 4.540099 AGGAAATGTGAAGGATAGGAACCA 59.460 41.667 0.00 0.00 0.00 3.67
304 305 5.117406 AGGAAATGTGAAGGATAGGAACC 57.883 43.478 0.00 0.00 0.00 3.62
305 306 6.099845 TCCTAGGAAATGTGAAGGATAGGAAC 59.900 42.308 9.71 0.00 35.72 3.62
306 307 6.209774 TCCTAGGAAATGTGAAGGATAGGAA 58.790 40.000 9.71 0.00 35.72 3.36
307 308 5.788430 TCCTAGGAAATGTGAAGGATAGGA 58.212 41.667 9.71 0.00 36.17 2.94
308 309 6.500589 TTCCTAGGAAATGTGAAGGATAGG 57.499 41.667 22.27 0.00 36.28 2.57
309 310 8.986929 ATTTTCCTAGGAAATGTGAAGGATAG 57.013 34.615 32.45 0.00 42.71 2.08
311 312 9.768215 TTTATTTTCCTAGGAAATGTGAAGGAT 57.232 29.630 32.45 22.75 42.71 3.24
312 313 9.594936 TTTTATTTTCCTAGGAAATGTGAAGGA 57.405 29.630 32.45 18.20 42.71 3.36
336 337 7.765695 TTTCCATTGAGTCTATGCTCTTTTT 57.234 32.000 8.84 0.00 36.51 1.94
337 338 7.765695 TTTTCCATTGAGTCTATGCTCTTTT 57.234 32.000 8.84 0.00 36.51 2.27
338 339 7.765695 TTTTTCCATTGAGTCTATGCTCTTT 57.234 32.000 8.84 0.00 36.51 2.52
339 340 7.951347 ATTTTTCCATTGAGTCTATGCTCTT 57.049 32.000 8.84 0.00 36.51 2.85
340 341 7.951347 AATTTTTCCATTGAGTCTATGCTCT 57.049 32.000 8.84 0.00 36.51 4.09
353 354 8.334633 GGTTGACACCAAAGGAATTTTTCCATT 61.335 37.037 8.87 0.31 46.88 3.16
354 355 6.911529 GGTTGACACCAAAGGAATTTTTCCAT 60.912 38.462 8.87 0.00 46.88 3.41
355 356 5.627968 GGTTGACACCAAAGGAATTTTTCCA 60.628 40.000 8.87 0.00 46.88 3.53
356 357 4.814234 GGTTGACACCAAAGGAATTTTTCC 59.186 41.667 0.00 0.00 45.80 3.13
357 358 5.984233 GGTTGACACCAAAGGAATTTTTC 57.016 39.130 0.00 0.00 43.61 2.29
373 374 5.691754 GGAAACAAGATGTCATTTGGTTGAC 59.308 40.000 12.70 0.00 45.05 3.18
374 375 5.598005 AGGAAACAAGATGTCATTTGGTTGA 59.402 36.000 12.70 0.00 34.55 3.18
375 376 5.846203 AGGAAACAAGATGTCATTTGGTTG 58.154 37.500 12.70 6.32 34.55 3.77
376 377 7.781324 ATAGGAAACAAGATGTCATTTGGTT 57.219 32.000 9.41 9.41 36.95 3.67
377 378 7.093771 GGAATAGGAAACAAGATGTCATTTGGT 60.094 37.037 10.50 3.75 0.00 3.67
378 379 7.123247 AGGAATAGGAAACAAGATGTCATTTGG 59.877 37.037 10.50 0.00 0.00 3.28
379 380 8.059798 AGGAATAGGAAACAAGATGTCATTTG 57.940 34.615 0.00 0.00 0.00 2.32
380 381 9.178758 GTAGGAATAGGAAACAAGATGTCATTT 57.821 33.333 0.00 0.00 0.00 2.32
381 382 8.552296 AGTAGGAATAGGAAACAAGATGTCATT 58.448 33.333 0.00 0.00 0.00 2.57
382 383 8.095452 AGTAGGAATAGGAAACAAGATGTCAT 57.905 34.615 0.00 0.00 0.00 3.06
383 384 7.180229 TGAGTAGGAATAGGAAACAAGATGTCA 59.820 37.037 0.00 0.00 0.00 3.58
384 385 7.556844 TGAGTAGGAATAGGAAACAAGATGTC 58.443 38.462 0.00 0.00 0.00 3.06
385 386 7.496346 TGAGTAGGAATAGGAAACAAGATGT 57.504 36.000 0.00 0.00 0.00 3.06
386 387 9.703892 CTATGAGTAGGAATAGGAAACAAGATG 57.296 37.037 0.00 0.00 0.00 2.90
403 404 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
404 405 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
405 406 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
406 407 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
407 408 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
408 409 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
418 419 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
419 420 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
420 421 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
421 422 8.708378 TCTTGTAGGAAATGAGATGACATGTAT 58.292 33.333 0.00 0.00 0.00 2.29
422 423 8.078060 TCTTGTAGGAAATGAGATGACATGTA 57.922 34.615 0.00 0.00 0.00 2.29
423 424 6.950842 TCTTGTAGGAAATGAGATGACATGT 58.049 36.000 0.00 0.00 0.00 3.21
424 425 8.447924 AATCTTGTAGGAAATGAGATGACATG 57.552 34.615 0.00 0.00 0.00 3.21
425 426 7.718753 GGAATCTTGTAGGAAATGAGATGACAT 59.281 37.037 0.00 0.00 0.00 3.06
426 427 7.050377 GGAATCTTGTAGGAAATGAGATGACA 58.950 38.462 0.00 0.00 0.00 3.58
427 428 7.278875 AGGAATCTTGTAGGAAATGAGATGAC 58.721 38.462 0.00 0.00 0.00 3.06
428 429 7.443302 AGGAATCTTGTAGGAAATGAGATGA 57.557 36.000 0.00 0.00 0.00 2.92
429 430 9.790344 AATAGGAATCTTGTAGGAAATGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
431 432 9.838339 GAAATAGGAATCTTGTAGGAAATGAGA 57.162 33.333 0.00 0.00 0.00 3.27
432 433 9.844257 AGAAATAGGAATCTTGTAGGAAATGAG 57.156 33.333 0.00 0.00 0.00 2.90
464 465 7.449704 GCCTCTTTTGGTTCATAGGATATGATT 59.550 37.037 0.57 0.00 0.00 2.57
465 466 6.944862 GCCTCTTTTGGTTCATAGGATATGAT 59.055 38.462 0.57 0.00 0.00 2.45
466 467 6.299141 GCCTCTTTTGGTTCATAGGATATGA 58.701 40.000 0.00 0.00 0.00 2.15
467 468 5.474876 GGCCTCTTTTGGTTCATAGGATATG 59.525 44.000 0.00 0.00 0.00 1.78
468 469 5.373854 AGGCCTCTTTTGGTTCATAGGATAT 59.626 40.000 0.00 0.00 0.00 1.63
469 470 4.726825 AGGCCTCTTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
470 471 3.529319 AGGCCTCTTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
471 472 2.919602 AGGCCTCTTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
472 473 3.372440 AGGCCTCTTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
473 474 6.834168 TTTTAGGCCTCTTTTGGTTCATAG 57.166 37.500 9.68 0.00 0.00 2.23
474 475 6.551601 TGTTTTTAGGCCTCTTTTGGTTCATA 59.448 34.615 9.68 0.00 0.00 2.15
475 476 5.365314 TGTTTTTAGGCCTCTTTTGGTTCAT 59.635 36.000 9.68 0.00 0.00 2.57
476 477 4.712337 TGTTTTTAGGCCTCTTTTGGTTCA 59.288 37.500 9.68 0.00 0.00 3.18
477 478 5.270893 TGTTTTTAGGCCTCTTTTGGTTC 57.729 39.130 9.68 0.00 0.00 3.62
478 479 5.685520 TTGTTTTTAGGCCTCTTTTGGTT 57.314 34.783 9.68 0.00 0.00 3.67
479 480 5.424757 GTTTGTTTTTAGGCCTCTTTTGGT 58.575 37.500 9.68 0.00 0.00 3.67
480 481 4.506288 CGTTTGTTTTTAGGCCTCTTTTGG 59.494 41.667 9.68 0.00 0.00 3.28
481 482 5.344884 TCGTTTGTTTTTAGGCCTCTTTTG 58.655 37.500 9.68 0.00 0.00 2.44
482 483 5.585820 TCGTTTGTTTTTAGGCCTCTTTT 57.414 34.783 9.68 0.00 0.00 2.27
483 484 5.300792 TCATCGTTTGTTTTTAGGCCTCTTT 59.699 36.000 9.68 0.00 0.00 2.52
484 485 4.825085 TCATCGTTTGTTTTTAGGCCTCTT 59.175 37.500 9.68 0.00 0.00 2.85
485 486 4.394729 TCATCGTTTGTTTTTAGGCCTCT 58.605 39.130 9.68 0.00 0.00 3.69
486 487 4.759516 TCATCGTTTGTTTTTAGGCCTC 57.240 40.909 9.68 0.00 0.00 4.70
487 488 5.523438 TTTCATCGTTTGTTTTTAGGCCT 57.477 34.783 11.78 11.78 0.00 5.19
488 489 5.331980 CGTTTTCATCGTTTGTTTTTAGGCC 60.332 40.000 0.00 0.00 0.00 5.19
489 490 5.331980 CCGTTTTCATCGTTTGTTTTTAGGC 60.332 40.000 0.00 0.00 0.00 3.93
490 491 5.744819 ACCGTTTTCATCGTTTGTTTTTAGG 59.255 36.000 0.00 0.00 0.00 2.69
491 492 6.469595 TCACCGTTTTCATCGTTTGTTTTTAG 59.530 34.615 0.00 0.00 0.00 1.85
593 607 0.798776 GTGGTTGGATTCAGCGACAG 59.201 55.000 0.00 0.00 34.16 3.51
639 680 4.744570 TCAGTTACCTAAGACATTGCTCG 58.255 43.478 0.00 0.00 0.00 5.03
662 703 0.685458 GCCCGGACTAGGTTCTGGTA 60.685 60.000 0.73 0.00 40.12 3.25
679 720 0.109319 CCAATTGTACGCCAACAGCC 60.109 55.000 4.43 0.00 38.78 4.85
692 733 5.050490 CACTAACTACCGATCCTCCAATTG 58.950 45.833 0.00 0.00 0.00 2.32
698 739 3.285484 TCACCACTAACTACCGATCCTC 58.715 50.000 0.00 0.00 0.00 3.71
699 740 3.288964 CTCACCACTAACTACCGATCCT 58.711 50.000 0.00 0.00 0.00 3.24
728 1447 6.620877 TGAGATACCACTGGTTTAGAATGT 57.379 37.500 5.90 0.00 37.09 2.71
733 1452 7.362920 CCCAATTTTGAGATACCACTGGTTTAG 60.363 40.741 5.90 0.00 37.09 1.85
743 1462 2.099098 CGGCACCCAATTTTGAGATACC 59.901 50.000 0.00 0.00 0.00 2.73
750 1469 0.249826 AACAGCGGCACCCAATTTTG 60.250 50.000 1.45 0.00 0.00 2.44
780 1499 2.735444 CGGTCACTATGCGATGACACTT 60.735 50.000 6.70 0.00 45.83 3.16
795 1514 0.807667 ATCAGCTCGAATGCGGTCAC 60.808 55.000 0.00 0.00 38.28 3.67
797 1516 1.493950 CCATCAGCTCGAATGCGGTC 61.494 60.000 0.00 0.00 38.28 4.79
804 1523 1.227350 CCATCGCCATCAGCTCGAA 60.227 57.895 0.00 0.00 40.39 3.71
828 1547 3.668386 GGAAGTTGTTCCGCCCAG 58.332 61.111 0.00 0.00 43.13 4.45
871 3256 3.058224 GGTCAGATTTGTTGCTACGCTTT 60.058 43.478 0.00 0.00 0.00 3.51
890 3275 1.144936 CTCTTGGAGCGGGATGGTC 59.855 63.158 0.00 0.00 44.49 4.02
891 3276 3.036429 GCTCTTGGAGCGGGATGGT 62.036 63.158 3.74 0.00 45.85 3.55
909 3297 0.094216 CAGAGTGACGCGCAAGATTG 59.906 55.000 5.73 0.00 43.02 2.67
962 3358 1.256812 GGTGGGGTTTCTTGGATGTG 58.743 55.000 0.00 0.00 0.00 3.21
995 3406 2.045926 GCGTGCTCTCCATGGGTT 60.046 61.111 13.02 0.00 0.00 4.11
1275 3689 1.303888 ACGGGAGAAGTACTCGGCA 60.304 57.895 0.00 0.00 45.76 5.69
1636 4057 4.773117 GTCGTCGGCGTCCTCCAC 62.773 72.222 10.18 0.00 39.49 4.02
1680 4101 2.579738 GGACTCACCTTCGGCTCC 59.420 66.667 0.00 0.00 35.41 4.70
1720 4141 0.099791 AACAAACGGTTTGAGTGGCG 59.900 50.000 33.41 11.15 43.26 5.69
1751 4182 3.383698 TTAACAGACCAAAACCACCCA 57.616 42.857 0.00 0.00 0.00 4.51
1930 4923 6.465084 AGTTTTAGTGATGGTCAAGGTAGAC 58.535 40.000 0.00 0.00 37.80 2.59
1936 4929 9.099454 GGAGTATTAGTTTTAGTGATGGTCAAG 57.901 37.037 0.00 0.00 0.00 3.02
1939 4932 7.793036 AGGGAGTATTAGTTTTAGTGATGGTC 58.207 38.462 0.00 0.00 0.00 4.02
1942 4935 8.478877 ACAGAGGGAGTATTAGTTTTAGTGATG 58.521 37.037 0.00 0.00 0.00 3.07
1961 4954 7.612677 ACACTCTTATGTTAGTTTACAGAGGG 58.387 38.462 0.00 0.00 31.28 4.30
1962 4955 9.490379 AAACACTCTTATGTTAGTTTACAGAGG 57.510 33.333 0.00 0.00 42.01 3.69
1983 4976 9.708092 ACTTAAACTAAGGAGTGATCTAAACAC 57.292 33.333 0.00 0.00 40.08 3.32
2028 5021 9.090692 GCCGTTTCGTATGGTATTACATAATAT 57.909 33.333 0.00 0.00 35.29 1.28
2029 5022 8.087136 TGCCGTTTCGTATGGTATTACATAATA 58.913 33.333 0.00 0.00 35.29 0.98
2030 5023 6.930164 TGCCGTTTCGTATGGTATTACATAAT 59.070 34.615 0.00 0.00 35.29 1.28
2031 5024 6.279123 TGCCGTTTCGTATGGTATTACATAA 58.721 36.000 0.00 0.00 35.29 1.90
2032 5025 5.840715 TGCCGTTTCGTATGGTATTACATA 58.159 37.500 0.00 0.00 35.16 2.29
2033 5026 4.695396 TGCCGTTTCGTATGGTATTACAT 58.305 39.130 0.00 0.00 35.16 2.29
2034 5027 4.120792 TGCCGTTTCGTATGGTATTACA 57.879 40.909 0.00 0.00 35.16 2.41
2035 5028 5.922544 ACTATGCCGTTTCGTATGGTATTAC 59.077 40.000 7.24 0.00 38.89 1.89
2036 5029 6.088016 ACTATGCCGTTTCGTATGGTATTA 57.912 37.500 7.24 0.00 38.89 0.98
2037 5030 4.952460 ACTATGCCGTTTCGTATGGTATT 58.048 39.130 7.24 0.00 38.89 1.89
2038 5031 4.595762 ACTATGCCGTTTCGTATGGTAT 57.404 40.909 7.14 7.14 40.79 2.73
2039 5032 4.389890 AACTATGCCGTTTCGTATGGTA 57.610 40.909 1.57 0.00 35.16 3.25
2040 5033 2.973694 ACTATGCCGTTTCGTATGGT 57.026 45.000 1.57 0.00 35.16 3.55
2041 5034 3.619483 TCAAACTATGCCGTTTCGTATGG 59.381 43.478 0.00 0.00 35.06 2.74
2042 5035 4.850859 TCAAACTATGCCGTTTCGTATG 57.149 40.909 0.00 0.00 35.06 2.39
2047 5040 6.822073 AAAAGTTTCAAACTATGCCGTTTC 57.178 33.333 2.38 0.00 41.91 2.78
2048 5041 6.020201 CGAAAAAGTTTCAAACTATGCCGTTT 60.020 34.615 2.38 0.00 41.91 3.60
2049 5042 5.457473 CGAAAAAGTTTCAAACTATGCCGTT 59.543 36.000 2.38 0.00 41.91 4.44
2052 5045 5.525199 TCCGAAAAAGTTTCAAACTATGCC 58.475 37.500 2.38 0.00 41.91 4.40
2057 5050 5.810074 CACCATTCCGAAAAAGTTTCAAACT 59.190 36.000 0.00 0.00 45.46 2.66
2061 5054 3.954904 TCCACCATTCCGAAAAAGTTTCA 59.045 39.130 1.99 0.00 0.00 2.69
2147 5144 9.826574 GACCATCAGTGTAAGTAACCAAATATA 57.173 33.333 0.00 0.00 0.00 0.86
2148 5145 8.325787 TGACCATCAGTGTAAGTAACCAAATAT 58.674 33.333 0.00 0.00 0.00 1.28
2151 5148 5.931294 TGACCATCAGTGTAAGTAACCAAA 58.069 37.500 0.00 0.00 0.00 3.28
2154 5151 6.870971 TTTTGACCATCAGTGTAAGTAACC 57.129 37.500 0.00 0.00 0.00 2.85
2158 5155 8.157476 AGACTAATTTTGACCATCAGTGTAAGT 58.843 33.333 0.00 0.00 0.00 2.24
2163 5160 8.322906 TGTAAGACTAATTTTGACCATCAGTG 57.677 34.615 0.00 0.00 0.00 3.66
2205 5202 3.068691 CTCCCTTCGCTCGGGTCA 61.069 66.667 0.00 0.00 42.56 4.02
2258 5256 0.984230 TCCACCTCCTGCTCGATTTT 59.016 50.000 0.00 0.00 0.00 1.82
2288 5286 1.482593 AGTCTTCGCTCCCCATGTTAG 59.517 52.381 0.00 0.00 0.00 2.34
2381 5379 0.775861 GCCGCGTCATCAACAAAAAC 59.224 50.000 4.92 0.00 0.00 2.43
3006 8584 7.413657 GCCTTTTTCATACACTTCGTAGCATTA 60.414 37.037 0.00 0.00 32.28 1.90
3021 8599 6.627953 GCATTGCCTTCTTAGCCTTTTTCATA 60.628 38.462 0.00 0.00 0.00 2.15
3124 8702 7.088589 TGCTTGCTTATCCTGAAATAAAGAC 57.911 36.000 0.00 0.00 0.00 3.01
3172 8750 6.183360 GGAAAATGCCATCTCCTCTAAACTTC 60.183 42.308 0.00 0.00 0.00 3.01
3212 8791 5.486526 CTTCAAAGTGGTGAGAAGATAGCT 58.513 41.667 0.00 0.00 39.78 3.32
3228 8807 7.900782 ATGAAAATTTCAGCATCCTTCAAAG 57.099 32.000 14.10 0.00 43.98 2.77
3258 8837 2.789491 GCATTTTCCTGCTGGCTATC 57.211 50.000 4.42 0.00 39.12 2.08
3345 8924 7.432148 ACCATGTTCATAGTATGGAGTTACA 57.568 36.000 10.26 7.57 43.15 2.41
3389 8968 3.025287 ACATGTGCGATTGTTTTTCCC 57.975 42.857 0.00 0.00 0.00 3.97
3401 8980 1.339711 GGCTTGCTTTAACATGTGCG 58.660 50.000 0.00 0.00 0.00 5.34
3404 8983 5.835113 ATAATCGGCTTGCTTTAACATGT 57.165 34.783 0.00 0.00 0.00 3.21
3428 9007 7.795047 TCTAAAGCATTGTCCATGAGATAGAA 58.205 34.615 0.00 0.00 34.31 2.10
3434 9013 7.741027 ATGTATCTAAAGCATTGTCCATGAG 57.259 36.000 0.00 0.00 34.31 2.90
3468 9047 2.427453 ACGGACATTGTGCTAGTAGGAG 59.573 50.000 6.74 0.00 0.00 3.69
3487 9066 2.254918 TTATTTCATGGCAACGCACG 57.745 45.000 0.00 0.00 42.51 5.34
3526 9105 7.441890 TGTACGACACACATTTCCAAATTAT 57.558 32.000 0.00 0.00 30.04 1.28
3569 9148 4.820716 AGAGCCTCAATTCATTGCTACATC 59.179 41.667 0.00 0.00 37.68 3.06
3572 9151 5.573337 AAAGAGCCTCAATTCATTGCTAC 57.427 39.130 0.00 0.00 37.68 3.58
3620 9199 6.092670 CGATTAAGGAGACACATTGACACAAT 59.907 38.462 0.00 0.00 0.00 2.71
3622 9201 4.929211 CGATTAAGGAGACACATTGACACA 59.071 41.667 0.00 0.00 0.00 3.72
3623 9202 4.201724 GCGATTAAGGAGACACATTGACAC 60.202 45.833 0.00 0.00 0.00 3.67
3624 9203 3.932710 GCGATTAAGGAGACACATTGACA 59.067 43.478 0.00 0.00 0.00 3.58
3625 9204 3.000322 CGCGATTAAGGAGACACATTGAC 60.000 47.826 0.00 0.00 0.00 3.18
3626 9205 3.186909 CGCGATTAAGGAGACACATTGA 58.813 45.455 0.00 0.00 0.00 2.57
3627 9206 2.285834 GCGCGATTAAGGAGACACATTG 60.286 50.000 12.10 0.00 0.00 2.82
3628 9207 1.933853 GCGCGATTAAGGAGACACATT 59.066 47.619 12.10 0.00 0.00 2.71
3629 9208 1.137086 AGCGCGATTAAGGAGACACAT 59.863 47.619 12.10 0.00 0.00 3.21
3661 9240 6.612306 GGAAAGAAAGATGTCGCTTTACATT 58.388 36.000 0.00 0.00 40.17 2.71
3686 9265 4.760220 TTGGAGGGAGGGAGGGGC 62.760 72.222 0.00 0.00 0.00 5.80
3692 9271 0.842467 AGTGAAGGTTGGAGGGAGGG 60.842 60.000 0.00 0.00 0.00 4.30
3732 9311 7.121168 TGCAGAGGTACCATATTTTGAAAAGAG 59.879 37.037 15.94 0.00 0.00 2.85
3745 9324 4.493618 ACCATAGTATGCAGAGGTACCAT 58.506 43.478 15.94 0.26 0.00 3.55
3801 9380 8.916654 CGAATATCAACTAGCTAATCGACAAAT 58.083 33.333 0.00 0.00 0.00 2.32
3842 9422 9.573166 ACAATGGCTACTAATCAAATAGCAATA 57.427 29.630 4.99 0.00 42.59 1.90
3846 9426 7.736447 AGACAATGGCTACTAATCAAATAGC 57.264 36.000 0.00 0.00 40.53 2.97
3864 9444 1.021390 CAAGAGCGCCCGAAGACAAT 61.021 55.000 2.29 0.00 0.00 2.71
3867 9447 3.491652 GCAAGAGCGCCCGAAGAC 61.492 66.667 2.29 0.00 0.00 3.01
3896 9476 4.960938 AGCAACATACTTCTGAACTGACA 58.039 39.130 0.00 0.00 0.00 3.58
3906 9486 3.991773 TGGTAACGTGAGCAACATACTTC 59.008 43.478 1.24 0.00 42.51 3.01
3922 9502 6.640518 TGGAGAACAAGATCACTATGGTAAC 58.359 40.000 0.00 0.00 0.00 2.50
3928 9508 6.380079 AGGTTTGGAGAACAAGATCACTAT 57.620 37.500 0.00 0.00 40.82 2.12
3933 9513 5.463392 GCAAAAAGGTTTGGAGAACAAGATC 59.537 40.000 1.72 0.00 43.73 2.75
3942 9522 5.604565 AGAGATTTGCAAAAAGGTTTGGAG 58.395 37.500 17.19 0.00 44.62 3.86
3944 9524 7.784633 TTTAGAGATTTGCAAAAAGGTTTGG 57.215 32.000 17.19 0.00 43.73 3.28
3945 9525 9.654417 CATTTTAGAGATTTGCAAAAAGGTTTG 57.346 29.630 17.19 2.90 45.88 2.93
3946 9526 8.839343 CCATTTTAGAGATTTGCAAAAAGGTTT 58.161 29.630 17.19 0.00 28.85 3.27
3949 9529 6.128200 GGCCATTTTAGAGATTTGCAAAAAGG 60.128 38.462 17.19 5.62 33.83 3.11
3951 9531 5.704978 GGGCCATTTTAGAGATTTGCAAAAA 59.295 36.000 17.19 4.25 0.00 1.94
3955 9535 3.701040 GAGGGCCATTTTAGAGATTTGCA 59.299 43.478 6.18 0.00 0.00 4.08
3962 9542 5.278660 GCAATACATGAGGGCCATTTTAGAG 60.279 44.000 6.18 0.00 31.94 2.43
3983 9563 6.457663 GGCATACAATACGTCAACTATTGCAA 60.458 38.462 0.00 0.00 35.72 4.08
3987 9567 6.821665 ACAAGGCATACAATACGTCAACTATT 59.178 34.615 0.00 0.00 0.00 1.73
4023 9603 5.601313 TGTCTCTAACAGTTGGTAAGAACCT 59.399 40.000 0.00 0.00 38.83 3.50
4074 9654 3.068560 CCACTGGGTGCATTTTTCATTG 58.931 45.455 0.00 0.00 31.34 2.82
4082 9662 1.259840 GGCATTCCACTGGGTGCATT 61.260 55.000 20.88 0.00 36.79 3.56
4088 9668 2.734755 TCTATTGGCATTCCACTGGG 57.265 50.000 0.00 0.00 43.33 4.45
4089 9669 3.567164 GTCATCTATTGGCATTCCACTGG 59.433 47.826 0.00 0.00 43.33 4.00
4090 9670 3.249320 CGTCATCTATTGGCATTCCACTG 59.751 47.826 0.00 0.00 43.33 3.66
4092 9672 3.206150 ACGTCATCTATTGGCATTCCAC 58.794 45.455 0.00 0.00 43.33 4.02
4097 9677 5.134202 TCGAATACGTCATCTATTGGCAT 57.866 39.130 0.00 0.00 40.69 4.40
4118 9698 7.148738 CGTAATACACATTGCCTCACAGATATC 60.149 40.741 0.00 0.00 0.00 1.63
4120 9700 5.983118 CGTAATACACATTGCCTCACAGATA 59.017 40.000 0.00 0.00 0.00 1.98
4121 9701 4.811024 CGTAATACACATTGCCTCACAGAT 59.189 41.667 0.00 0.00 0.00 2.90
4125 9705 5.107133 ACTACGTAATACACATTGCCTCAC 58.893 41.667 0.00 0.00 0.00 3.51
4126 9706 5.333299 ACTACGTAATACACATTGCCTCA 57.667 39.130 0.00 0.00 0.00 3.86
4130 9742 6.844279 GCATTGTACTACGTAATACACATTGC 59.156 38.462 15.87 18.72 36.64 3.56
4155 9767 6.976088 TGTGGTTGAGTAACACAAATAATGG 58.024 36.000 0.00 0.00 38.58 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.