AutoCloner

Multiple sequence alignment - TraesCS2A01G055900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G055900	chr2A	100.000	2183	0	0	1	2183	23937958	23935776	0.000000e+00	4032
1	TraesCS2A01G055900	chr2A	93.605	688	43	1	1	688	692735412	692734726	0.000000e+00	1026
2	TraesCS2A01G055900	chr2A	98.106	264	5	0	698	961	202275657	202275394	5.490000e-126	460
3	TraesCS2A01G055900	chr2A	95.699	279	12	0	698	976	150242488	150242766	1.190000e-122	449
4	TraesCS2A01G055900	chr2D	92.150	1172	64	9	1035	2183	21910757	21909591	0.000000e+00	1629
5	TraesCS2A01G055900	chr2D	83.682	239	25	7	1828	2059	22106869	22106638	1.700000e-51	213
6	TraesCS2A01G055900	chr2D	97.403	77	2	0	959	1035	21910887	21910811	4.890000e-27	132
7	TraesCS2A01G055900	chr3D	91.405	954	70	9	7	957	432531405	432530461	0.000000e+00	1297
8	TraesCS2A01G055900	chr5D	89.200	963	90	12	1	957	364631226	364632180	0.000000e+00	1190
9	TraesCS2A01G055900	chr5D	93.723	685	43	0	1	685	7915608	7916292	0.000000e+00	1027
10	TraesCS2A01G055900	chr5D	84.706	170	26	0	1034	1203	76004211	76004380	1.040000e-38	171
11	TraesCS2A01G055900	chr5D	94.937	79	4	0	958	1036	76004081	76004159	8.180000e-25	124
12	TraesCS2A01G055900	chr4A	94.161	685	40	0	1	685	567712852	567712168	0.000000e+00	1044
13	TraesCS2A01G055900	chr4A	98.851	261	3	0	698	958	95981511	95981771	1.180000e-127	466
14	TraesCS2A01G055900	chr1A	93.869	685	42	0	1	685	291264254	291263570	0.000000e+00	1033
15	TraesCS2A01G055900	chr3A	93.723	685	43	0	1	685	88559992	88559308	0.000000e+00	1027
16	TraesCS2A01G055900	chr3A	89.229	817	74	10	1	816	63797082	63796279	0.000000e+00	1009
17	TraesCS2A01G055900	chr3A	98.851	261	3	0	698	958	457198448	457198708	1.180000e-127	466
18	TraesCS2A01G055900	chr3A	98.846	260	3	0	698	957	269442084	269442343	4.240000e-127	464
19	TraesCS2A01G055900	chr3A	98.846	260	3	0	698	957	551777188	551777447	4.240000e-127	464
20	TraesCS2A01G055900	chr3A	96.350	274	10	0	698	971	104756476	104756203	3.300000e-123	451
21	TraesCS2A01G055900	chr1D	93.723	685	43	0	1	685	431436461	431437145	0.000000e+00	1027
22	TraesCS2A01G055900	chr5A	78.998	419	60	15	1034	1447	71457927	71458322	5.980000e-66	261
23	TraesCS2A01G055900	chr6A	96.154	78	3	0	959	1036	86399391	86399314	6.330000e-26	128
24	TraesCS2A01G055900	chr6D	94.937	79	4	0	958	1036	68848050	68847972	8.180000e-25	124
25	TraesCS2A01G055900	chr6B	94.937	79	4	0	958	1036	143751029	143750951	8.180000e-25	124
26	TraesCS2A01G055900	chr5B	94.937	79	4	0	958	1036	84665879	84665957	8.180000e-25	124

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G055900	chr2A	23935776	23937958	2182	True	4032.0	4032	100.0000	1	2183	1	chr2A.!!$R1	2182
1	TraesCS2A01G055900	chr2A	692734726	692735412	686	True	1026.0	1026	93.6050	1	688	1	chr2A.!!$R3	687
2	TraesCS2A01G055900	chr2D	21909591	21910887	1296	True	880.5	1629	94.7765	959	2183	2	chr2D.!!$R2	1224
3	TraesCS2A01G055900	chr3D	432530461	432531405	944	True	1297.0	1297	91.4050	7	957	1	chr3D.!!$R1	950
4	TraesCS2A01G055900	chr5D	364631226	364632180	954	False	1190.0	1190	89.2000	1	957	1	chr5D.!!$F2	956
5	TraesCS2A01G055900	chr5D	7915608	7916292	684	False	1027.0	1027	93.7230	1	685	1	chr5D.!!$F1	684
6	TraesCS2A01G055900	chr4A	567712168	567712852	684	True	1044.0	1044	94.1610	1	685	1	chr4A.!!$R1	684
7	TraesCS2A01G055900	chr1A	291263570	291264254	684	True	1033.0	1033	93.8690	1	685	1	chr1A.!!$R1	684
8	TraesCS2A01G055900	chr3A	88559308	88559992	684	True	1027.0	1027	93.7230	1	685	1	chr3A.!!$R2	684
9	TraesCS2A01G055900	chr3A	63796279	63797082	803	True	1009.0	1009	89.2290	1	816	1	chr3A.!!$R1	815
10	TraesCS2A01G055900	chr1D	431436461	431437145	684	False	1027.0	1027	93.7230	1	685	1	chr1D.!!$F1	684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
99	100	1.705337	CGTTAAGCATGCGGACCCTG	61.705	60.0	13.01	0.0	0.0	4.45	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1585	1649	0.108138	ACTATTCACTCACCGCTGCC	60.108	55.0	0.0	0.0	0.0	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	2.526888	ATCTGGGACTCCGAACTACA	57.473	50.000	0.00	0.00	35.24	2.74
53	54	8.390354	ACTACATTCGATACATCAAAACACATG	58.610	33.333	0.00	0.00	0.00	3.21
57	58	6.176975	TCGATACATCAAAACACATGAACC	57.823	37.500	0.00	0.00	0.00	3.62
99	100	1.705337	CGTTAAGCATGCGGACCCTG	61.705	60.000	13.01	0.00	0.00	4.45
120	121	2.543238	GCGGGTTCGAGAACTATGTAGG	60.543	54.545	14.62	0.47	40.94	3.18
159	160	4.404394	TCTCCTGTCAATAACCAATAGCGA	59.596	41.667	0.00	0.00	0.00	4.93
265	266	5.654603	TGTCATCGGTATGTTACTTGTCT	57.345	39.130	0.00	0.00	34.50	3.41
293	294	4.060205	TCGATCGTCGGTATCTCAATACA	58.940	43.478	15.94	0.00	40.88	2.29
339	340	6.264841	AGTCTCTTTACTCGTTCCGTAATT	57.735	37.500	0.00	0.00	0.00	1.40
381	382	1.948104	TAGTCACGTTGCTTGCAAGT	58.052	45.000	26.55	5.35	0.00	3.16
388	389	4.752604	TCACGTTGCTTGCAAGTCTTATAA	59.247	37.500	26.55	10.40	0.00	0.98
434	435	4.390264	CAGAGATACCTCTCCGATACACA	58.610	47.826	0.00	0.00	46.38	3.72
458	459	6.420306	CAGAGTGACAAATCCTAATCTCGATG	59.580	42.308	0.00	0.00	0.00	3.84
553	554	3.769739	TGATGGCACACTAAGTGTTCT	57.230	42.857	2.17	0.00	45.08	3.01
690	693	5.645067	GTCAATCACATCATTCTCTCAACCA	59.355	40.000	0.00	0.00	0.00	3.67
761	765	9.466497	AATCAAATAACAACTCATGTCTATGGT	57.534	29.630	0.00	0.00	42.99	3.55
770	774	6.620877	ACTCATGTCTATGGTTAGGAAACA	57.379	37.500	0.00	0.00	37.34	2.83
823	827	5.127491	AGTAGAGGCATACTAGTGACACTC	58.873	45.833	12.39	8.31	34.21	3.51
840	844	8.150945	AGTGACACTCTGTTTGTCTATGTATTT	58.849	33.333	1.07	0.00	43.30	1.40
957	961	5.310409	CCTCTAGGGCATATTTCCTTCAA	57.690	43.478	0.00	0.00	34.75	2.69
969	973	3.568093	CCTTCAAAAAGGTGGCGTG	57.432	52.632	0.00	0.00	46.10	5.34
1041	1099	1.035139	GGGCAAATATCCTGTGGCAG	58.965	55.000	0.00	0.00	39.46	4.85
1043	1101	2.590821	GGCAAATATCCTGTGGCAGAT	58.409	47.619	0.00	0.00	37.73	2.90
1058	1116	2.005451	GCAGATGATCAACAAGCGTCT	58.995	47.619	0.00	0.00	40.27	4.18
1069	1127	1.220529	CAAGCGTCTTGTTCTGAGCA	58.779	50.000	10.30	0.00	0.00	4.26
1096	1154	2.359900	GGATGAAAGATGCCAAGACGT	58.640	47.619	0.00	0.00	0.00	4.34
1122	1180	5.154222	CCTTATGAAAACCTGAAGCGTTTC	58.846	41.667	4.89	4.89	32.33	2.78
1124	1182	2.011222	TGAAAACCTGAAGCGTTTCGT	58.989	42.857	7.53	0.00	36.04	3.85
1131	1189	0.581529	TGAAGCGTTTCGTCAAGCTG	59.418	50.000	7.53	0.00	40.17	4.24
1151	1209	1.449726	GACAACCGGGTTTGGGTCAC	61.450	60.000	18.73	0.00	36.57	3.67
1152	1210	2.203238	AACCGGGTTTGGGTCACG	60.203	61.111	6.59	0.00	36.57	4.35
1153	1211	2.744243	AACCGGGTTTGGGTCACGA	61.744	57.895	6.59	0.00	36.57	4.35
1162	1220	3.816523	GGTTTGGGTCACGAAGAACAATA	59.183	43.478	0.00	0.00	34.85	1.90
1183	1241	2.229302	ACTCTCACCGCTAAGAACTGAC	59.771	50.000	0.00	0.00	0.00	3.51
1184	1242	2.229062	CTCTCACCGCTAAGAACTGACA	59.771	50.000	0.00	0.00	0.00	3.58
1277	1335	0.550914	TTGGAGCACTGAAGTTGGGT	59.449	50.000	0.00	0.00	0.00	4.51
1293	1351	6.817765	AGTTGGGTTCACAGTATAATGTTG	57.182	37.500	2.43	0.18	0.00	3.33
1297	1355	5.007682	GGGTTCACAGTATAATGTTGTGGT	58.992	41.667	2.43	0.00	41.83	4.16
1307	1365	7.981789	CAGTATAATGTTGTGGTCTATGTGACT	59.018	37.037	0.00	0.00	44.74	3.41
1311	1369	3.832490	TGTTGTGGTCTATGTGACTAGCT	59.168	43.478	0.00	0.00	44.74	3.32
1315	1373	6.392625	TGTGGTCTATGTGACTAGCTTATC	57.607	41.667	0.00	0.00	44.74	1.75
1395	1453	0.112995	TTCCCATGCTCCTGCTTGTT	59.887	50.000	0.00	0.00	41.15	2.83
1399	1457	1.336517	CCATGCTCCTGCTTGTTTGTG	60.337	52.381	0.00	0.00	41.15	3.33
1455	1513	3.575687	AGCAAAAATATAGCTCCATGCCC	59.424	43.478	0.00	0.00	44.23	5.36
1458	1516	4.459852	AAAATATAGCTCCATGCCCTGT	57.540	40.909	0.00	0.00	44.23	4.00
1462	1520	1.289160	TAGCTCCATGCCCTGTTTCT	58.711	50.000	0.00	0.00	44.23	2.52
1492	1550	5.596845	TGGTACAACTTGGAAATTCAAAGC	58.403	37.500	9.90	0.00	31.92	3.51
1528	1586	3.398954	TGTAAATTTGAAGCGATCGGC	57.601	42.857	18.30	9.32	44.05	5.54
1536	1594	6.077408	AATTTGAAGCGATCGGCAAATTTGA	61.077	36.000	22.31	1.15	44.13	2.69
1549	1607	5.482006	GGCAAATTTGAATAGCTTGTTCCT	58.518	37.500	22.31	0.00	0.00	3.36
1552	1610	7.602265	GGCAAATTTGAATAGCTTGTTCCTTAA	59.398	33.333	22.31	0.00	0.00	1.85
1566	1624	5.801380	TGTTCCTTAATAGTTCCAGTGGAC	58.199	41.667	12.69	7.50	0.00	4.02
1585	1649	3.499918	GGACAATCACTGACCTTTCACAG	59.500	47.826	0.00	0.00	36.96	3.66
1597	1661	2.324014	TTTCACAGGCAGCGGTGAGT	62.324	55.000	20.69	10.34	44.12	3.41
1604	1668	0.108138	GGCAGCGGTGAGTGAATAGT	60.108	55.000	20.69	0.00	0.00	2.12
1619	1683	4.209288	GTGAATAGTAATGCGTTCGCAGAT	59.791	41.667	23.18	16.91	44.75	2.90
1621	1685	5.401376	TGAATAGTAATGCGTTCGCAGATAC	59.599	40.000	23.18	24.00	44.75	2.24
1674	1738	1.933181	GTTGCGAGTGTGCATATGCTA	59.067	47.619	27.13	14.28	45.78	3.49
1690	1754	8.578151	TGCATATGCTATCAAGATAAATTGCAA	58.422	29.630	27.13	0.00	42.66	4.08
1723	1787	5.182570	ACAAGTGTATAGAAGTGTAGCGTGA	59.817	40.000	0.00	0.00	0.00	4.35
1801	1865	7.166307	CACGGCATTACAAATAATCAGTTCATG	59.834	37.037	0.00	0.00	0.00	3.07
1825	1896	6.127054	TGGTAAATCTGATTCCCACTAGACAG	60.127	42.308	14.38	0.00	0.00	3.51
1832	1903	2.848678	TCCCACTAGACAGCATACCT	57.151	50.000	0.00	0.00	0.00	3.08
1882	1953	3.084039	GTGTTGGAGAAATGGCAGATCA	58.916	45.455	0.00	0.00	0.00	2.92
1883	1954	3.698040	GTGTTGGAGAAATGGCAGATCAT	59.302	43.478	0.00	0.00	0.00	2.45
1884	1955	3.949754	TGTTGGAGAAATGGCAGATCATC	59.050	43.478	0.00	0.00	0.00	2.92
1939	2010	6.670695	ACCAAAGTGAGGCAGAAAAATAAT	57.329	33.333	0.00	0.00	0.00	1.28
1952	2023	3.932545	AAAATAATTGTGCTGGCGTCA	57.067	38.095	0.00	0.00	0.00	4.35
2007	2078	3.988976	ATTAGAAAGTGAGGCAGCAGA	57.011	42.857	0.00	0.00	0.00	4.26
2024	2095	4.701651	CAGCAGATTTCAGTAAACCATGGA	59.298	41.667	21.47	0.00	0.00	3.41
2131	2202	7.363705	CCAGATATCAGGCCACAAATTTTAACA	60.364	37.037	5.01	0.00	0.00	2.41
2142	2222	8.487176	GCCACAAATTTTAACACAATGTAAGAG	58.513	33.333	0.00	0.00	0.00	2.85
2161	2241	2.656055	GCCAAATCAAAGGCCGCA	59.344	55.556	0.00	0.00	45.18	5.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	7.250569	GGTTCATGTGTTTTGATGTATCGAAT	58.749	34.615	0.00	0.00	30.68	3.34
53	54	3.985925	GTGACGATCGGTATTATGGGTTC	59.014	47.826	20.98	3.55	0.00	3.62
99	100	2.543238	CCTACATAGTTCTCGAACCCGC	60.543	54.545	6.20	0.00	42.06	6.13
120	121	2.132740	GAGATGAGTCTCGGTCATGC	57.867	55.000	7.54	0.00	41.35	4.06
141	142	5.123186	CAGGTTTCGCTATTGGTTATTGACA	59.877	40.000	0.00	0.00	0.00	3.58
159	160	5.835280	GGAACCAATATGATCATCCAGGTTT	59.165	40.000	26.34	16.70	0.00	3.27
265	266	3.400255	AGATACCGACGATCGAATCTCA	58.600	45.455	24.34	2.26	43.74	3.27
339	340	4.746535	TGAGTTAGTTGCGGGATGATAA	57.253	40.909	0.00	0.00	0.00	1.75
369	370	7.219535	CACATCATTATAAGACTTGCAAGCAAC	59.780	37.037	26.27	16.93	0.00	4.17
381	382	7.744733	TCTGGGTAATGCACATCATTATAAGA	58.255	34.615	0.00	3.15	46.08	2.10
388	389	2.158564	CCCTCTGGGTAATGCACATCAT	60.159	50.000	0.00	0.00	38.25	2.45
403	404	0.105246	AGGTATCTCTGGGCCCTCTG	60.105	60.000	25.70	13.48	0.00	3.35
434	435	6.097554	ACATCGAGATTAGGATTTGTCACTCT	59.902	38.462	0.00	0.00	0.00	3.24
458	459	3.067461	TGGTGTTTGTTGAGTTGGCATAC	59.933	43.478	0.00	0.00	0.00	2.39
537	538	1.798813	CGGAAGAACACTTAGTGTGCC	59.201	52.381	19.33	15.66	46.79	5.01
656	657	4.665451	TGATGTGATTGACTTGACCCATT	58.335	39.130	0.00	0.00	0.00	3.16
743	747	6.620877	TCCTAACCATAGACATGAGTTGTT	57.379	37.500	0.00	0.00	39.18	2.83
761	765	9.473007	TGAATCAATGATGGTTATGTTTCCTAA	57.527	29.630	0.00	0.00	27.31	2.69
770	774	5.824624	AGCTCGTTGAATCAATGATGGTTAT	59.175	36.000	17.14	0.00	38.47	1.89
779	783	5.482908	ACTTGACTAGCTCGTTGAATCAAT	58.517	37.500	0.00	0.00	0.00	2.57
784	788	4.156190	CCTCTACTTGACTAGCTCGTTGAA	59.844	45.833	0.00	0.00	0.00	2.69
840	844	5.726980	ACCGGAAACTTAGTACATGTGTA	57.273	39.130	9.46	0.00	0.00	2.90
853	857	7.107542	TGCTAGAATTGTATTAACCGGAAACT	58.892	34.615	9.46	0.00	0.00	2.66
957	961	1.228552	ATCAGCCACGCCACCTTTT	60.229	52.632	0.00	0.00	0.00	2.27
968	972	1.825090	CACAGGTTTAGCATCAGCCA	58.175	50.000	0.00	0.00	43.56	4.75
969	973	0.453390	GCACAGGTTTAGCATCAGCC	59.547	55.000	0.00	0.00	43.56	4.85
1041	1099	4.153117	AGAACAAGACGCTTGTTGATCATC	59.847	41.667	29.64	19.42	42.11	2.92
1043	1101	3.248363	CAGAACAAGACGCTTGTTGATCA	59.752	43.478	29.64	0.00	42.11	2.92
1058	1116	1.509644	CCGCAGCTTGCTCAGAACAA	61.510	55.000	6.58	0.00	42.25	2.83
1069	1127	0.737219	GCATCTTTCATCCGCAGCTT	59.263	50.000	0.00	0.00	0.00	3.74
1076	1134	2.359900	ACGTCTTGGCATCTTTCATCC	58.640	47.619	0.00	0.00	0.00	3.51
1096	1154	3.057596	CGCTTCAGGTTTTCATAAGGCAA	60.058	43.478	0.00	0.00	0.00	4.52
1122	1180	2.317609	CCGGTTGTCCAGCTTGACG	61.318	63.158	12.84	1.46	38.11	4.35
1124	1182	1.990160	AACCCGGTTGTCCAGCTTGA	61.990	55.000	0.69	0.00	0.00	3.02
1131	1189	1.900016	GACCCAAACCCGGTTGTCC	60.900	63.158	2.79	0.00	32.27	4.02
1151	1209	2.599082	GCGGTGAGAGTATTGTTCTTCG	59.401	50.000	0.00	0.00	0.00	3.79
1152	1210	3.851098	AGCGGTGAGAGTATTGTTCTTC	58.149	45.455	0.00	0.00	0.00	2.87
1153	1211	3.963428	AGCGGTGAGAGTATTGTTCTT	57.037	42.857	0.00	0.00	0.00	2.52
1162	1220	2.229302	GTCAGTTCTTAGCGGTGAGAGT	59.771	50.000	9.16	0.00	0.00	3.24
1183	1241	9.132521	GAACTACATGACATGAAAATTTCCTTG	57.867	33.333	22.19	4.05	0.00	3.61
1184	1242	9.082313	AGAACTACATGACATGAAAATTTCCTT	57.918	29.630	22.19	0.00	0.00	3.36
1240	1298	5.928264	GCTCCAACTTTTAAGTCAATGCATT	59.072	36.000	5.99	5.99	38.57	3.56
1252	1310	4.338118	CCAACTTCAGTGCTCCAACTTTTA	59.662	41.667	0.00	0.00	0.00	1.52
1253	1311	3.131046	CCAACTTCAGTGCTCCAACTTTT	59.869	43.478	0.00	0.00	0.00	2.27
1277	1335	8.318412	ACATAGACCACAACATTATACTGTGAA	58.682	33.333	3.09	0.00	42.48	3.18
1297	1355	6.504398	CCAAACGATAAGCTAGTCACATAGA	58.496	40.000	0.00	0.00	0.00	1.98
1307	1365	4.513442	AGAACATGCCAAACGATAAGCTA	58.487	39.130	0.00	0.00	0.00	3.32
1311	1369	4.517075	TCACAAGAACATGCCAAACGATAA	59.483	37.500	0.00	0.00	0.00	1.75
1315	1373	2.772568	TCACAAGAACATGCCAAACG	57.227	45.000	0.00	0.00	0.00	3.60
1395	1453	2.610976	GCATCTTTGCCATGAAGCACAA	60.611	45.455	0.00	0.00	43.97	3.33
1416	1474	3.564235	TGCTGCAAAGCATAGAACTTG	57.436	42.857	0.00	0.00	40.23	3.16
1525	1583	4.327087	GGAACAAGCTATTCAAATTTGCCG	59.673	41.667	13.54	2.91	0.00	5.69
1536	1594	8.329502	ACTGGAACTATTAAGGAACAAGCTATT	58.670	33.333	0.00	0.00	0.00	1.73
1549	1607	7.016153	AGTGATTGTCCACTGGAACTATTAA	57.984	36.000	0.00	0.00	44.93	1.40
1585	1649	0.108138	ACTATTCACTCACCGCTGCC	60.108	55.000	0.00	0.00	0.00	4.85
1587	1651	3.246226	GCATTACTATTCACTCACCGCTG	59.754	47.826	0.00	0.00	0.00	5.18
1590	1654	3.444916	ACGCATTACTATTCACTCACCG	58.555	45.455	0.00	0.00	0.00	4.94
1619	1683	7.911205	CGAAATGGAACAAAGTAAAACTGTGTA	59.089	33.333	3.38	0.00	45.50	2.90
1690	1754	9.569122	ACACTTCTATACACTTGTAAATTTGGT	57.431	29.630	0.00	0.00	33.76	3.67
1723	1787	7.414222	ACATTTTCATTGTGCTCCTGATAAT	57.586	32.000	0.00	0.00	0.00	1.28
1771	1835	8.220755	ACTGATTATTTGTAATGCCGTGTAAT	57.779	30.769	0.00	0.00	0.00	1.89
1776	1840	6.751514	TGAACTGATTATTTGTAATGCCGT	57.248	33.333	0.00	0.00	0.00	5.68
1801	1865	6.235231	TGTCTAGTGGGAATCAGATTTACC	57.765	41.667	9.76	9.76	0.00	2.85
1832	1903	3.900971	TGAGGCTTCATTTATGCATGGA	58.099	40.909	10.16	0.00	0.00	3.41
1952	2023	8.081025	CACATGAGTAGATGCATATATAGCGAT	58.919	37.037	4.03	0.00	33.85	4.58
1967	2038	9.990360	TTCTAATTTGTGTTACACATGAGTAGA	57.010	29.630	22.92	22.92	44.16	2.59
2024	2095	9.838339	CTTATTGAGGTGTCAAATATAAGACCT	57.162	33.333	0.00	0.00	45.88	3.85
2032	2103	8.089625	TCTCATCCTTATTGAGGTGTCAAATA	57.910	34.615	1.23	0.00	45.88	1.40
2080	2151	8.160106	GGTGGGAATCAGAGATACTATGAATTT	58.840	37.037	0.00	0.00	35.32	1.82
2085	2156	5.777223	TCTGGTGGGAATCAGAGATACTATG	59.223	44.000	0.00	0.00	35.37	2.23
2131	2202	3.081061	TGATTTGGCGCTCTTACATTGT	58.919	40.909	7.64	0.00	0.00	2.71
2160	2240	3.507233	TGGTATCTGCTTCTTTTGGCTTG	59.493	43.478	0.00	0.00	0.00	4.01
2161	2241	3.766545	TGGTATCTGCTTCTTTTGGCTT	58.233	40.909	0.00	0.00	0.00	4.35

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.