AutoCloner

Multiple sequence alignment - TraesCS2A01G055800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G055800	chr2A	100.000	2252	0	0	1	2252	23927720	23925469	0.000000e+00	4159.0
1	TraesCS2A01G055800	chr2A	96.126	1265	41	4	1	1264	709825387	709826644	0.000000e+00	2058.0
2	TraesCS2A01G055800	chr2A	96.667	60	1	1	1251	1309	23933791	23933850	5.120000e-17	99.0
3	TraesCS2A01G055800	chr2A	91.045	67	5	1	1251	1317	499563921	499563856	3.080000e-14	89.8
4	TraesCS2A01G055800	chr7A	96.047	1265	49	1	1	1264	26584730	26583466	0.000000e+00	2058.0
5	TraesCS2A01G055800	chr3A	96.126	1265	42	6	1	1263	58873095	58871836	0.000000e+00	2058.0
6	TraesCS2A01G055800	chr3A	100.000	53	0	0	1251	1303	164438668	164438720	5.120000e-17	99.0
7	TraesCS2A01G055800	chr3A	98.148	54	0	1	1251	1304	58871819	58871767	2.380000e-15	93.5
8	TraesCS2A01G055800	chr5B	94.862	1265	64	1	1	1264	38468086	38469350	0.000000e+00	1975.0
9	TraesCS2A01G055800	chr6B	94.708	1266	63	4	1	1264	24940662	24939399	0.000000e+00	1964.0
10	TraesCS2A01G055800	chr1A	94.466	1265	69	1	1	1264	281369411	281368147	0.000000e+00	1947.0
11	TraesCS2A01G055800	chr5A	93.323	1303	84	3	1	1302	681377778	681379078	0.000000e+00	1921.0
12	TraesCS2A01G055800	chr3B	93.439	1265	81	2	1	1264	485696231	485694968	0.000000e+00	1875.0
13	TraesCS2A01G055800	chr3B	93.423	1262	82	1	1	1261	750919799	750921060	0.000000e+00	1869.0
14	TraesCS2A01G055800	chr2D	92.511	948	35	17	1304	2239	21833151	21832228	0.000000e+00	1325.0
15	TraesCS2A01G055800	chr7D	98.214	56	1	0	1251	1306	366659200	366659255	5.120000e-17	99.0
16	TraesCS2A01G055800	chr4D	100.000	53	0	0	1251	1303	5533381	5533329	5.120000e-17	99.0
17	TraesCS2A01G055800	chr4D	98.148	54	1	0	1251	1304	467594597	467594650	6.620000e-16	95.3
18	TraesCS2A01G055800	chr1D	98.148	54	1	0	1251	1304	45808107	45808160	6.620000e-16	95.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G055800	chr2A	23925469	23927720	2251	True	4159.00	4159	100.000	1	2252	1	chr2A.!!$R1	2251
1	TraesCS2A01G055800	chr2A	709825387	709826644	1257	False	2058.00	2058	96.126	1	1264	1	chr2A.!!$F2	1263
2	TraesCS2A01G055800	chr7A	26583466	26584730	1264	True	2058.00	2058	96.047	1	1264	1	chr7A.!!$R1	1263
3	TraesCS2A01G055800	chr3A	58871767	58873095	1328	True	1075.75	2058	97.137	1	1304	2	chr3A.!!$R1	1303
4	TraesCS2A01G055800	chr5B	38468086	38469350	1264	False	1975.00	1975	94.862	1	1264	1	chr5B.!!$F1	1263
5	TraesCS2A01G055800	chr6B	24939399	24940662	1263	True	1964.00	1964	94.708	1	1264	1	chr6B.!!$R1	1263
6	TraesCS2A01G055800	chr1A	281368147	281369411	1264	True	1947.00	1947	94.466	1	1264	1	chr1A.!!$R1	1263
7	TraesCS2A01G055800	chr5A	681377778	681379078	1300	False	1921.00	1921	93.323	1	1302	1	chr5A.!!$F1	1301
8	TraesCS2A01G055800	chr3B	485694968	485696231	1263	True	1875.00	1875	93.439	1	1264	1	chr3B.!!$R1	1263
9	TraesCS2A01G055800	chr3B	750919799	750921060	1261	False	1869.00	1869	93.423	1	1261	1	chr3B.!!$F1	1260
10	TraesCS2A01G055800	chr2D	21832228	21833151	923	True	1325.00	1325	92.511	1304	2239	1	chr2D.!!$R1	935

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
475	477	0.096976	CCGTCCACGATGCAATTGAC	59.903	55.0	10.34	1.02	43.02	3.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2076	2083	0.179004	ACCATTGTCCCAAGCGTGAA	60.179	50.0	0.0	0.0	0.0	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
171	172	6.840780	ATCTGTGCTAAAACAAATAGGCTT	57.159	33.333	0.00	0.00	0.00	4.35
198	199	2.012673	GATGGGAAGTGCAGTGATCAC	58.987	52.381	18.47	18.47	34.80	3.06
243	244	3.898123	GTCATCTCCCCAGCATAGAAGTA	59.102	47.826	0.00	0.00	0.00	2.24
324	326	1.443702	CGGCATCGAACGAGACACA	60.444	57.895	2.94	0.00	39.00	3.72
475	477	0.096976	CCGTCCACGATGCAATTGAC	59.903	55.000	10.34	1.02	43.02	3.18
559	561	4.652421	TGTCATTTGCAAATATCCGCAT	57.348	36.364	23.69	0.00	38.10	4.73
883	885	8.910944	CAAATGGAGAGATTTCAACCAATAGAT	58.089	33.333	6.35	0.00	36.29	1.98
1224	1227	2.935849	CGTTATGTTGTCTAGCATGGCA	59.064	45.455	0.00	0.00	0.00	4.92
1272	1276	2.407090	GGCCATTTTGTGCTGAACTTC	58.593	47.619	0.00	0.00	0.00	3.01
1302	1306	3.559655	GGGCCAGTTTTGTGATTTTTCAC	59.440	43.478	4.39	0.00	40.78	3.18
1309	1313	9.139174	CCAGTTTTGTGATTTTTCACCATATAC	57.861	33.333	3.84	0.00	39.72	1.47
1353	1357	3.750371	TGGAACAGATTTGTGGTAGTGG	58.250	45.455	0.00	0.00	37.67	4.00
1356	1360	4.385825	GAACAGATTTGTGGTAGTGGTCA	58.614	43.478	0.00	0.00	37.67	4.02
1361	1365	3.374220	TTTGTGGTAGTGGTCAGTACG	57.626	47.619	9.14	0.00	37.94	3.67
1415	1419	4.746115	GTGCATGATGAAACAAGCAGAAAA	59.254	37.500	0.00	0.00	43.28	2.29
1459	1463	6.039382	ACCGTAGTGCAGAGAATTTTCTTTTT	59.961	34.615	0.00	0.00	37.73	1.94
1524	1528	3.641437	AAGTGCGCAAATTTAGCTGAA	57.359	38.095	14.00	0.00	0.00	3.02
1528	1532	3.674753	GTGCGCAAATTTAGCTGAATGTT	59.325	39.130	14.00	0.00	0.00	2.71
1546	1550	8.924511	TGAATGTTCTCTTTAAGACCAATTCT	57.075	30.769	12.19	0.00	29.29	2.40
1548	1552	8.697507	AATGTTCTCTTTAAGACCAATTCTGT	57.302	30.769	0.00	0.00	33.46	3.41
1555	1559	7.158697	TCTTTAAGACCAATTCTGTGATCGAA	58.841	34.615	0.00	0.00	33.46	3.71
1580	1584	8.273780	AGTCATTGACTCATGATAACCTTTTC	57.726	34.615	13.61	0.00	38.71	2.29
1720	1727	9.724839	TGCAAGTTAATTTTGTGTAACTCTTAC	57.275	29.630	0.00	0.00	39.15	2.34
1721	1728	9.724839	GCAAGTTAATTTTGTGTAACTCTTACA	57.275	29.630	0.00	0.00	43.43	2.41
1799	1806	8.099537	ACTAATATACTAGCTTACGGCACTCTA	58.900	37.037	0.00	0.00	44.79	2.43
1836	1843	1.125930	CATTCGTTTGATCGTGACGCA	59.874	47.619	0.00	0.00	36.77	5.24
1840	1847	1.007011	CGTTTGATCGTGACGCATCTC	60.007	52.381	0.00	0.00	0.00	2.75
1842	1849	2.654749	TTGATCGTGACGCATCTCTT	57.345	45.000	0.00	0.00	0.00	2.85
1843	1850	2.654749	TGATCGTGACGCATCTCTTT	57.345	45.000	0.00	0.00	0.00	2.52
1845	1852	2.094752	TGATCGTGACGCATCTCTTTGA	60.095	45.455	0.00	0.00	0.00	2.69
1846	1853	1.982612	TCGTGACGCATCTCTTTGAG	58.017	50.000	0.00	0.00	0.00	3.02
1847	1854	1.539827	TCGTGACGCATCTCTTTGAGA	59.460	47.619	0.00	0.00	43.20	3.27
1949	1956	7.744087	ACAATAAACAGATGAGTGTAAGCAA	57.256	32.000	0.00	0.00	0.00	3.91
1950	1957	7.810658	ACAATAAACAGATGAGTGTAAGCAAG	58.189	34.615	0.00	0.00	0.00	4.01
1952	1959	8.935844	CAATAAACAGATGAGTGTAAGCAAGTA	58.064	33.333	0.00	0.00	0.00	2.24
1954	1961	7.801716	AAACAGATGAGTGTAAGCAAGTAAA	57.198	32.000	0.00	0.00	0.00	2.01
1955	1962	7.801716	AACAGATGAGTGTAAGCAAGTAAAA	57.198	32.000	0.00	0.00	0.00	1.52
1956	1963	7.190920	ACAGATGAGTGTAAGCAAGTAAAAC	57.809	36.000	0.00	0.00	0.00	2.43
1957	1964	6.765989	ACAGATGAGTGTAAGCAAGTAAAACA	59.234	34.615	0.00	0.00	0.00	2.83
1958	1965	7.445402	ACAGATGAGTGTAAGCAAGTAAAACAT	59.555	33.333	0.00	0.00	0.00	2.71
1959	1966	7.747799	CAGATGAGTGTAAGCAAGTAAAACATG	59.252	37.037	0.00	0.00	0.00	3.21
1960	1967	6.312399	TGAGTGTAAGCAAGTAAAACATGG	57.688	37.500	0.00	0.00	0.00	3.66
1961	1968	5.240623	TGAGTGTAAGCAAGTAAAACATGGG	59.759	40.000	0.00	0.00	0.00	4.00
1962	1969	4.022329	AGTGTAAGCAAGTAAAACATGGGC	60.022	41.667	0.00	0.00	0.00	5.36
1963	1970	4.022329	GTGTAAGCAAGTAAAACATGGGCT	60.022	41.667	0.00	0.00	0.00	5.19
1964	1971	3.665745	AAGCAAGTAAAACATGGGCTG	57.334	42.857	0.00	0.00	0.00	4.85
1965	1972	1.895131	AGCAAGTAAAACATGGGCTGG	59.105	47.619	0.00	0.00	0.00	4.85
1966	1973	1.672737	GCAAGTAAAACATGGGCTGGC	60.673	52.381	0.00	0.00	0.00	4.85
1967	1974	0.887933	AAGTAAAACATGGGCTGGCG	59.112	50.000	0.00	0.00	0.00	5.69
1968	1975	0.965363	AGTAAAACATGGGCTGGCGG	60.965	55.000	0.00	0.00	0.00	6.13
1969	1976	2.347322	TAAAACATGGGCTGGCGGC	61.347	57.895	10.59	10.59	40.90	6.53
2049	2056	2.107750	CTGCCTCATCGCGGACAT	59.892	61.111	6.13	0.00	37.30	3.06
2051	2058	2.106938	GCCTCATCGCGGACATCA	59.893	61.111	6.13	0.00	0.00	3.07
2061	2068	1.795872	CGCGGACATCAAAACACACTA	59.204	47.619	0.00	0.00	0.00	2.74
2069	2076	7.244192	GGACATCAAAACACACTATTAAGCTC	58.756	38.462	0.00	0.00	0.00	4.09
2076	2083	6.552445	AACACACTATTAAGCTCAGGATCT	57.448	37.500	0.00	0.00	0.00	2.75
2077	2084	6.552445	ACACACTATTAAGCTCAGGATCTT	57.448	37.500	0.00	0.00	0.00	2.40
2078	2085	6.578023	ACACACTATTAAGCTCAGGATCTTC	58.422	40.000	0.00	0.00	0.00	2.87
2086	2093	1.649664	CTCAGGATCTTCACGCTTGG	58.350	55.000	0.00	0.00	0.00	3.61
2172	2179	6.109156	TGACACAGTTAGGTCATGTAATGT	57.891	37.500	0.00	0.00	46.80	2.71
2188	2195	9.679661	TCATGTAATGTACCTTCACATATTTGT	57.320	29.630	0.00	0.00	46.80	2.83
2203	2210	7.028962	CACATATTTGTTAACTCCACACATGG	58.971	38.462	7.22	0.00	39.95	3.66
2204	2211	6.945435	ACATATTTGTTAACTCCACACATGGA	59.055	34.615	7.22	0.00	42.71	3.41
2205	2212	7.094377	ACATATTTGTTAACTCCACACATGGAC	60.094	37.037	7.22	0.00	41.00	4.02
2239	2255	7.766219	AAGACAATTGTATGTACGTACCATC	57.234	36.000	22.43	12.50	32.57	3.51
2240	2256	6.869695	AGACAATTGTATGTACGTACCATCA	58.130	36.000	22.43	14.72	32.57	3.07
2241	2257	6.755141	AGACAATTGTATGTACGTACCATCAC	59.245	38.462	22.43	14.29	32.57	3.06
2242	2258	6.636705	ACAATTGTATGTACGTACCATCACT	58.363	36.000	22.43	9.90	0.00	3.41
2243	2259	7.774134	ACAATTGTATGTACGTACCATCACTA	58.226	34.615	22.43	11.63	0.00	2.74
2244	2260	7.919091	ACAATTGTATGTACGTACCATCACTAG	59.081	37.037	22.43	9.84	0.00	2.57
2245	2261	7.578310	ATTGTATGTACGTACCATCACTAGT	57.422	36.000	22.43	0.00	0.00	2.57
2246	2262	8.681486	ATTGTATGTACGTACCATCACTAGTA	57.319	34.615	22.43	0.37	0.00	1.82
2247	2263	7.719778	TGTATGTACGTACCATCACTAGTAG	57.280	40.000	22.43	0.00	0.00	2.57
2248	2264	6.707608	TGTATGTACGTACCATCACTAGTAGG	59.292	42.308	22.43	0.45	0.00	3.18
2249	2265	4.454678	TGTACGTACCATCACTAGTAGGG	58.545	47.826	22.43	0.00	0.00	3.53
2250	2266	3.939740	ACGTACCATCACTAGTAGGGA	57.060	47.619	4.15	4.15	28.63	4.20
2251	2267	4.240881	ACGTACCATCACTAGTAGGGAA	57.759	45.455	6.13	0.00	27.39	3.97

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
171	172	2.158475	ACTGCACTTCCCATCAAAGGAA	60.158	45.455	0.00	0.00	41.14	3.36
198	199	3.316029	TGTCACTTTGCAGGATGTTTCTG	59.684	43.478	0.00	0.00	39.31	3.02
243	244	3.433615	GCGCTCTGAGACACATACTTTTT	59.566	43.478	9.28	0.00	0.00	1.94
261	262	3.989698	CTCGTTGACCGATGGCGCT	62.990	63.158	7.64	0.00	46.23	5.92
324	326	3.308046	GGCTTCTCCCTTTCATCTCACTT	60.308	47.826	0.00	0.00	0.00	3.16
559	561	7.540400	GCACATGTATGTATGTTTTTGCACTAA	59.460	33.333	0.00	0.00	39.17	2.24
657	659	9.884465	GTGTATGGAAGAATTAGTGCAAATATC	57.116	33.333	0.00	0.00	0.00	1.63
883	885	1.707823	TCTCCTCCCTTTCCCCTCTA	58.292	55.000	0.00	0.00	0.00	2.43
1183	1186	3.976701	CTCGGTCAAGGGCGCCATT	62.977	63.158	30.85	26.91	0.00	3.16
1275	1279	1.118838	TCACAAAACTGGCCCTTTGG	58.881	50.000	20.16	10.27	36.94	3.28
1309	1313	8.743714	TCCAGCATTCAGTATACATGAGTATAG	58.256	37.037	5.50	0.00	42.31	1.31
1353	1357	2.983402	TGTCACTACTGCGTACTGAC	57.017	50.000	14.93	14.93	34.66	3.51
1356	1360	2.882761	TGACTTGTCACTACTGCGTACT	59.117	45.455	0.00	0.00	0.00	2.73
1361	1365	7.133891	ACATTAATTGACTTGTCACTACTGC	57.866	36.000	2.62	0.00	0.00	4.40
1415	1419	5.974108	ACGGTGCTACTTGTTAGTTCATAT	58.026	37.500	0.00	0.00	35.78	1.78
1528	1532	6.813649	CGATCACAGAATTGGTCTTAAAGAGA	59.186	38.462	0.00	0.00	32.70	3.10
1546	1550	4.519540	TGAGTCAATGACTTCGATCACA	57.480	40.909	17.79	6.00	43.53	3.58
1548	1552	5.329035	TCATGAGTCAATGACTTCGATCA	57.671	39.130	17.79	10.73	43.53	2.92
1555	1559	7.337942	GGAAAAGGTTATCATGAGTCAATGACT	59.662	37.037	16.70	16.70	46.42	3.41
1597	1601	4.957954	TGCATAATTTCAGGGCATTTCTCT	59.042	37.500	0.00	0.00	0.00	3.10
1662	1666	6.123651	TCCTACAGTTTCATAGAGGTCTCTC	58.876	44.000	3.49	0.00	40.93	3.20
1720	1727	5.356190	ACATGCATTGGTAACTTCAGATCTG	59.644	40.000	17.07	17.07	37.61	2.90
1721	1728	5.503927	ACATGCATTGGTAACTTCAGATCT	58.496	37.500	0.00	0.00	37.61	2.75
1723	1730	4.641989	GGACATGCATTGGTAACTTCAGAT	59.358	41.667	0.00	0.00	37.61	2.90
1799	1806	0.874390	ATGTCTGCATTCGCGTTTGT	59.126	45.000	5.77	0.00	42.97	2.83
1853	1860	8.394971	TCTGTTGCTTCTTGAATTCTTATTCA	57.605	30.769	7.05	0.00	46.38	2.57
1875	1882	9.459640	CTCATGGCAGAATGTTTATTATTTCTG	57.540	33.333	7.06	7.06	39.31	3.02
1876	1883	9.412460	TCTCATGGCAGAATGTTTATTATTTCT	57.588	29.630	0.00	0.00	39.31	2.52
1892	1899	5.183713	TGGTGATAAAAGTTTCTCATGGCAG	59.816	40.000	0.00	0.00	0.00	4.85
1895	1902	7.063780	GCATTTGGTGATAAAAGTTTCTCATGG	59.936	37.037	0.00	0.00	0.00	3.66
1897	1904	7.099120	GGCATTTGGTGATAAAAGTTTCTCAT	58.901	34.615	4.65	0.00	0.00	2.90
1949	1956	0.965363	CCGCCAGCCCATGTTTTACT	60.965	55.000	0.00	0.00	0.00	2.24
1950	1957	1.510844	CCGCCAGCCCATGTTTTAC	59.489	57.895	0.00	0.00	0.00	2.01
1952	1959	3.694538	GCCGCCAGCCCATGTTTT	61.695	61.111	0.00	0.00	34.35	2.43
1954	1961	4.992740	TTGCCGCCAGCCCATGTT	62.993	61.111	0.00	0.00	42.71	2.71
1955	1962	2.852563	TATTTGCCGCCAGCCCATGT	62.853	55.000	0.00	0.00	42.71	3.21
1956	1963	2.126596	TATTTGCCGCCAGCCCATG	61.127	57.895	0.00	0.00	42.71	3.66
1957	1964	2.127232	GTATTTGCCGCCAGCCCAT	61.127	57.895	0.00	0.00	42.71	4.00
1958	1965	2.753849	GTATTTGCCGCCAGCCCA	60.754	61.111	0.00	0.00	42.71	5.36
1959	1966	3.527427	GGTATTTGCCGCCAGCCC	61.527	66.667	0.00	0.00	42.71	5.19
1960	1967	3.887868	CGGTATTTGCCGCCAGCC	61.888	66.667	0.00	0.00	45.47	4.85
1967	1974	2.878406	ACTGCATATCACGGTATTTGCC	59.122	45.455	10.54	0.00	34.18	4.52
1968	1975	3.362986	CGACTGCATATCACGGTATTTGC	60.363	47.826	7.43	7.43	35.25	3.68
1969	1976	3.362986	GCGACTGCATATCACGGTATTTG	60.363	47.826	0.00	0.00	42.15	2.32
2049	2056	6.530120	TCCTGAGCTTAATAGTGTGTTTTGA	58.470	36.000	0.00	0.00	0.00	2.69
2051	2058	7.398024	AGATCCTGAGCTTAATAGTGTGTTTT	58.602	34.615	0.00	0.00	0.00	2.43
2061	2068	3.133721	AGCGTGAAGATCCTGAGCTTAAT	59.866	43.478	0.00	0.00	37.15	1.40
2069	2076	0.250234	TCCCAAGCGTGAAGATCCTG	59.750	55.000	0.00	0.00	0.00	3.86
2076	2083	0.179004	ACCATTGTCCCAAGCGTGAA	60.179	50.000	0.00	0.00	0.00	3.18
2077	2084	0.888736	CACCATTGTCCCAAGCGTGA	60.889	55.000	0.00	0.00	0.00	4.35
2078	2085	1.580942	CACCATTGTCCCAAGCGTG	59.419	57.895	0.00	0.00	0.00	5.34
2086	2093	1.001641	AGCCTGAGCACCATTGTCC	60.002	57.895	0.00	0.00	43.56	4.02
2169	2176	9.174166	GGAGTTAACAAATATGTGAAGGTACAT	57.826	33.333	8.61	0.00	43.34	2.29
2170	2177	8.158132	TGGAGTTAACAAATATGTGAAGGTACA	58.842	33.333	8.61	0.00	40.46	2.90
2171	2178	8.448615	GTGGAGTTAACAAATATGTGAAGGTAC	58.551	37.037	8.61	0.00	40.46	3.34
2172	2179	8.158132	TGTGGAGTTAACAAATATGTGAAGGTA	58.842	33.333	8.61	0.00	40.46	3.08
2203	2210	9.301153	ACATACAATTGTCTTTTTCAGTTTGTC	57.699	29.630	15.85	0.00	31.06	3.18
2206	2213	9.445786	CGTACATACAATTGTCTTTTTCAGTTT	57.554	29.630	15.85	0.00	0.00	2.66
2208	2215	8.149973	ACGTACATACAATTGTCTTTTTCAGT	57.850	30.769	15.85	4.70	0.00	3.41
2209	2216	9.525007	GTACGTACATACAATTGTCTTTTTCAG	57.475	33.333	20.67	4.08	0.00	3.02
2210	2217	8.497554	GGTACGTACATACAATTGTCTTTTTCA	58.502	33.333	26.02	0.00	0.00	2.69
2211	2218	8.497554	TGGTACGTACATACAATTGTCTTTTTC	58.502	33.333	26.02	3.84	0.00	2.29

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.