Multiple sequence alignment - TraesCS2A01G055700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G055700 chr2A 100.000 2267 0 0 1 2267 23885068 23882802 0.000000e+00 4187.0
1 TraesCS2A01G055700 chr2A 87.912 182 10 2 451 620 747175305 747175124 1.060000e-48 204.0
2 TraesCS2A01G055700 chr2A 86.631 187 19 4 445 626 71588344 71588529 3.820000e-48 202.0
3 TraesCS2A01G055700 chr2D 89.365 1213 81 13 888 2075 21810308 21809119 0.000000e+00 1482.0
4 TraesCS2A01G055700 chr2D 85.259 502 41 12 1111 1610 46458363 46457893 9.410000e-134 486.0
5 TraesCS2A01G055700 chr2D 89.730 185 15 1 109 293 21810709 21810529 1.350000e-57 233.0
6 TraesCS2A01G055700 chr2D 94.891 137 4 3 487 621 470212080 470212215 6.340000e-51 211.0
7 TraesCS2A01G055700 chr2D 88.811 143 9 6 792 934 46468383 46468248 3.870000e-38 169.0
8 TraesCS2A01G055700 chr2D 89.147 129 8 2 88 216 46469796 46469674 3.010000e-34 156.0
9 TraesCS2A01G055700 chr2D 93.590 78 5 0 219 296 46469390 46469313 1.420000e-22 117.0
10 TraesCS2A01G055700 chrUn 83.129 1061 89 38 634 1663 240838067 240839068 0.000000e+00 885.0
11 TraesCS2A01G055700 chrUn 83.129 1061 89 38 634 1663 349772867 349773868 0.000000e+00 885.0
12 TraesCS2A01G055700 chrUn 83.129 1061 89 38 634 1663 349775163 349776164 0.000000e+00 885.0
13 TraesCS2A01G055700 chrUn 85.206 534 45 15 1147 1663 447159338 447158822 3.340000e-143 518.0
14 TraesCS2A01G055700 chrUn 86.620 426 48 7 1656 2080 240841258 240841675 1.590000e-126 462.0
15 TraesCS2A01G055700 chr2B 83.129 1061 89 38 634 1663 34806960 34807961 0.000000e+00 885.0
16 TraesCS2A01G055700 chr2B 86.620 426 48 7 1656 2080 34810151 34810568 1.590000e-126 462.0
17 TraesCS2A01G055700 chr2B 81.890 127 19 3 326 450 228997033 228996909 1.110000e-18 104.0
18 TraesCS2A01G055700 chr7B 95.732 164 5 2 2106 2267 211040361 211040198 1.730000e-66 263.0
19 TraesCS2A01G055700 chr7B 81.102 127 23 1 326 451 212643886 212644012 1.430000e-17 100.0
20 TraesCS2A01G055700 chr5A 95.732 164 5 1 2106 2267 389721192 389721029 1.730000e-66 263.0
21 TraesCS2A01G055700 chr5A 90.503 179 6 4 450 618 469102678 469102501 2.270000e-55 226.0
22 TraesCS2A01G055700 chr6B 95.706 163 5 1 2107 2267 230920684 230920522 6.210000e-66 261.0
23 TraesCS2A01G055700 chr6B 95.706 163 5 1 2107 2267 236159472 236159634 6.210000e-66 261.0
24 TraesCS2A01G055700 chr6A 95.706 163 5 1 2107 2267 146242478 146242640 6.210000e-66 261.0
25 TraesCS2A01G055700 chr6A 80.315 127 24 1 326 451 2792098 2791972 6.670000e-16 95.3
26 TraesCS2A01G055700 chr5D 95.210 167 5 2 2104 2267 458287968 458287802 6.210000e-66 261.0
27 TraesCS2A01G055700 chr1B 95.706 163 5 1 2107 2267 322054670 322054508 6.210000e-66 261.0
28 TraesCS2A01G055700 chr1B 95.706 163 5 1 2107 2267 322055130 322054968 6.210000e-66 261.0
29 TraesCS2A01G055700 chr1A 93.642 173 9 1 2097 2267 441209521 441209693 8.030000e-65 257.0
30 TraesCS2A01G055700 chr1A 89.005 191 8 6 447 626 494887078 494886890 8.150000e-55 224.0
31 TraesCS2A01G055700 chr1A 83.333 126 21 0 326 451 584688808 584688933 1.420000e-22 117.0
32 TraesCS2A01G055700 chr3A 90.556 180 7 2 452 621 674733993 674734172 1.750000e-56 230.0
33 TraesCS2A01G055700 chr3A 90.395 177 7 4 452 618 37308783 37308959 8.150000e-55 224.0
34 TraesCS2A01G055700 chr7A 87.629 194 11 4 445 626 33480199 33480391 1.760000e-51 213.0
35 TraesCS2A01G055700 chr7A 76.329 207 39 8 1862 2061 439020449 439020246 3.980000e-18 102.0
36 TraesCS2A01G055700 chr4A 94.697 132 3 1 487 618 299601894 299602021 3.820000e-48 202.0
37 TraesCS2A01G055700 chr4A 80.620 129 23 2 326 452 595647132 595647260 5.150000e-17 99.0
38 TraesCS2A01G055700 chr3D 85.366 123 14 3 326 446 378532563 378532683 8.500000e-25 124.0
39 TraesCS2A01G055700 chr3D 83.465 127 20 1 326 451 607879467 607879341 1.420000e-22 117.0
40 TraesCS2A01G055700 chr7D 83.200 125 21 0 326 450 133949268 133949392 5.120000e-22 115.0
41 TraesCS2A01G055700 chr5B 80.315 127 24 1 326 451 86995057 86995183 6.670000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G055700 chr2A 23882802 23885068 2266 True 4187.0 4187 100.0000 1 2267 1 chr2A.!!$R1 2266
1 TraesCS2A01G055700 chr2D 21809119 21810709 1590 True 857.5 1482 89.5475 109 2075 2 chr2D.!!$R2 1966
2 TraesCS2A01G055700 chrUn 349772867 349776164 3297 False 885.0 885 83.1290 634 1663 2 chrUn.!!$F2 1029
3 TraesCS2A01G055700 chrUn 240838067 240841675 3608 False 673.5 885 84.8745 634 2080 2 chrUn.!!$F1 1446
4 TraesCS2A01G055700 chrUn 447158822 447159338 516 True 518.0 518 85.2060 1147 1663 1 chrUn.!!$R1 516
5 TraesCS2A01G055700 chr2B 34806960 34810568 3608 False 673.5 885 84.8745 634 2080 2 chr2B.!!$F1 1446
6 TraesCS2A01G055700 chr1B 322054508 322055130 622 True 261.0 261 95.7060 2107 2267 2 chr1B.!!$R1 160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.039035 AGGGAAGAGAGCTCGTGACT 59.961 55.0 8.37 4.11 34.09 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 5077 0.105913 GAGGAGAGTACCAGGGGAGG 60.106 65.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.509166 TTAGGGAAGAGAGCTCGTGA 57.491 50.000 8.37 0.00 34.09 4.35
20 21 1.752683 TAGGGAAGAGAGCTCGTGAC 58.247 55.000 8.37 1.88 34.09 3.67
21 22 0.039035 AGGGAAGAGAGCTCGTGACT 59.961 55.000 8.37 4.11 34.09 3.41
22 23 0.892063 GGGAAGAGAGCTCGTGACTT 59.108 55.000 8.37 12.32 34.09 3.01
23 24 1.135228 GGGAAGAGAGCTCGTGACTTC 60.135 57.143 23.88 23.88 37.02 3.01
24 25 1.542030 GGAAGAGAGCTCGTGACTTCA 59.458 52.381 28.28 0.00 38.73 3.02
25 26 2.029828 GGAAGAGAGCTCGTGACTTCAA 60.030 50.000 28.28 0.00 38.73 2.69
26 27 2.715737 AGAGAGCTCGTGACTTCAAC 57.284 50.000 8.37 0.00 34.09 3.18
27 28 1.271102 AGAGAGCTCGTGACTTCAACC 59.729 52.381 8.37 0.00 34.09 3.77
28 29 1.000163 GAGAGCTCGTGACTTCAACCA 60.000 52.381 8.37 0.00 0.00 3.67
29 30 1.412710 AGAGCTCGTGACTTCAACCAA 59.587 47.619 8.37 0.00 0.00 3.67
30 31 1.795286 GAGCTCGTGACTTCAACCAAG 59.205 52.381 0.00 0.00 38.21 3.61
31 32 0.235926 GCTCGTGACTTCAACCAAGC 59.764 55.000 0.00 0.00 35.17 4.01
32 33 0.868406 CTCGTGACTTCAACCAAGCC 59.132 55.000 0.00 0.00 35.17 4.35
33 34 0.534203 TCGTGACTTCAACCAAGCCC 60.534 55.000 0.00 0.00 35.17 5.19
34 35 0.817634 CGTGACTTCAACCAAGCCCA 60.818 55.000 0.00 0.00 35.17 5.36
35 36 1.398692 GTGACTTCAACCAAGCCCAA 58.601 50.000 0.00 0.00 35.17 4.12
36 37 1.754226 GTGACTTCAACCAAGCCCAAA 59.246 47.619 0.00 0.00 35.17 3.28
37 38 1.754226 TGACTTCAACCAAGCCCAAAC 59.246 47.619 0.00 0.00 35.17 2.93
38 39 1.068588 GACTTCAACCAAGCCCAAACC 59.931 52.381 0.00 0.00 35.17 3.27
39 40 1.118838 CTTCAACCAAGCCCAAACCA 58.881 50.000 0.00 0.00 0.00 3.67
40 41 1.484240 CTTCAACCAAGCCCAAACCAA 59.516 47.619 0.00 0.00 0.00 3.67
41 42 1.799933 TCAACCAAGCCCAAACCAAT 58.200 45.000 0.00 0.00 0.00 3.16
42 43 1.415659 TCAACCAAGCCCAAACCAATG 59.584 47.619 0.00 0.00 0.00 2.82
43 44 1.415659 CAACCAAGCCCAAACCAATGA 59.584 47.619 0.00 0.00 0.00 2.57
44 45 1.799933 ACCAAGCCCAAACCAATGAA 58.200 45.000 0.00 0.00 0.00 2.57
45 46 1.693606 ACCAAGCCCAAACCAATGAAG 59.306 47.619 0.00 0.00 0.00 3.02
46 47 1.002315 CCAAGCCCAAACCAATGAAGG 59.998 52.381 0.00 0.00 0.00 3.46
47 48 1.969923 CAAGCCCAAACCAATGAAGGA 59.030 47.619 0.00 0.00 0.00 3.36
48 49 1.928868 AGCCCAAACCAATGAAGGAG 58.071 50.000 0.00 0.00 0.00 3.69
49 50 0.247460 GCCCAAACCAATGAAGGAGC 59.753 55.000 0.00 0.00 0.00 4.70
50 51 1.631405 CCCAAACCAATGAAGGAGCA 58.369 50.000 0.00 0.00 0.00 4.26
51 52 1.547372 CCCAAACCAATGAAGGAGCAG 59.453 52.381 0.00 0.00 0.00 4.24
52 53 1.547372 CCAAACCAATGAAGGAGCAGG 59.453 52.381 0.00 0.00 0.00 4.85
53 54 2.242043 CAAACCAATGAAGGAGCAGGT 58.758 47.619 0.00 0.00 0.00 4.00
54 55 3.420893 CAAACCAATGAAGGAGCAGGTA 58.579 45.455 0.00 0.00 0.00 3.08
55 56 3.356529 AACCAATGAAGGAGCAGGTAG 57.643 47.619 0.00 0.00 0.00 3.18
56 57 1.065126 ACCAATGAAGGAGCAGGTAGC 60.065 52.381 0.00 0.00 46.19 3.58
69 70 3.915536 GCAGGTAGCTAGCCATTAGTAC 58.084 50.000 19.06 6.06 41.15 2.73
70 71 3.574826 GCAGGTAGCTAGCCATTAGTACT 59.425 47.826 19.06 0.00 41.15 2.73
71 72 4.765856 GCAGGTAGCTAGCCATTAGTACTA 59.234 45.833 19.06 0.00 41.15 1.82
72 73 5.335819 GCAGGTAGCTAGCCATTAGTACTAC 60.336 48.000 19.06 3.79 41.15 2.73
73 74 5.183522 CAGGTAGCTAGCCATTAGTACTACC 59.816 48.000 19.06 12.94 41.15 3.18
74 75 5.075493 GGTAGCTAGCCATTAGTACTACCA 58.925 45.833 12.13 0.00 40.85 3.25
75 76 5.048154 GGTAGCTAGCCATTAGTACTACCAC 60.048 48.000 12.13 0.00 40.85 4.16
76 77 4.805744 AGCTAGCCATTAGTACTACCACT 58.194 43.478 12.13 1.00 0.00 4.00
77 78 4.585162 AGCTAGCCATTAGTACTACCACTG 59.415 45.833 12.13 0.00 0.00 3.66
78 79 4.583489 GCTAGCCATTAGTACTACCACTGA 59.417 45.833 2.29 0.00 0.00 3.41
79 80 5.244178 GCTAGCCATTAGTACTACCACTGAT 59.756 44.000 2.29 0.00 0.00 2.90
80 81 6.433404 GCTAGCCATTAGTACTACCACTGATA 59.567 42.308 2.29 0.00 0.00 2.15
81 82 7.122948 GCTAGCCATTAGTACTACCACTGATAT 59.877 40.741 2.29 0.00 0.00 1.63
82 83 7.469537 AGCCATTAGTACTACCACTGATATC 57.530 40.000 0.91 0.00 0.00 1.63
83 84 7.010771 AGCCATTAGTACTACCACTGATATCA 58.989 38.462 5.07 5.07 0.00 2.15
84 85 7.509318 AGCCATTAGTACTACCACTGATATCAA 59.491 37.037 6.90 0.00 0.00 2.57
85 86 8.314751 GCCATTAGTACTACCACTGATATCAAT 58.685 37.037 6.90 0.00 0.00 2.57
86 87 9.645059 CCATTAGTACTACCACTGATATCAATG 57.355 37.037 7.19 7.19 0.00 2.82
89 90 6.987386 AGTACTACCACTGATATCAATGAGC 58.013 40.000 15.55 0.00 0.00 4.26
90 91 6.780031 AGTACTACCACTGATATCAATGAGCT 59.220 38.462 15.55 0.72 0.00 4.09
91 92 7.945109 AGTACTACCACTGATATCAATGAGCTA 59.055 37.037 15.55 1.79 0.00 3.32
92 93 7.225784 ACTACCACTGATATCAATGAGCTAG 57.774 40.000 15.55 12.05 0.00 3.42
93 94 4.892433 ACCACTGATATCAATGAGCTAGC 58.108 43.478 15.55 6.62 0.00 3.42
94 95 4.346127 ACCACTGATATCAATGAGCTAGCA 59.654 41.667 18.83 0.00 0.00 3.49
95 96 5.163269 ACCACTGATATCAATGAGCTAGCAA 60.163 40.000 18.83 4.87 0.00 3.91
96 97 5.761726 CCACTGATATCAATGAGCTAGCAAA 59.238 40.000 18.83 4.45 0.00 3.68
97 98 6.261603 CCACTGATATCAATGAGCTAGCAAAA 59.738 38.462 18.83 1.54 0.00 2.44
98 99 7.353497 CACTGATATCAATGAGCTAGCAAAAG 58.647 38.462 18.83 2.64 0.00 2.27
99 100 6.485984 ACTGATATCAATGAGCTAGCAAAAGG 59.514 38.462 18.83 3.37 0.00 3.11
100 101 6.359804 TGATATCAATGAGCTAGCAAAAGGT 58.640 36.000 18.83 1.31 0.00 3.50
101 102 6.830324 TGATATCAATGAGCTAGCAAAAGGTT 59.170 34.615 18.83 0.00 0.00 3.50
102 103 5.990120 ATCAATGAGCTAGCAAAAGGTTT 57.010 34.783 18.83 0.00 0.00 3.27
103 104 5.789643 TCAATGAGCTAGCAAAAGGTTTT 57.210 34.783 18.83 0.00 0.00 2.43
104 105 5.772521 TCAATGAGCTAGCAAAAGGTTTTC 58.227 37.500 18.83 2.54 0.00 2.29
105 106 5.536161 TCAATGAGCTAGCAAAAGGTTTTCT 59.464 36.000 18.83 0.00 0.00 2.52
106 107 6.040842 TCAATGAGCTAGCAAAAGGTTTTCTT 59.959 34.615 18.83 0.00 37.28 2.52
107 108 5.852282 TGAGCTAGCAAAAGGTTTTCTTT 57.148 34.783 18.83 0.00 46.82 2.52
144 145 4.040339 TGTGGCAGTTCAAACTAGATCTCA 59.960 41.667 0.00 0.00 37.08 3.27
156 157 5.470047 ACTAGATCTCACACTTTTTCCGT 57.530 39.130 0.00 0.00 0.00 4.69
158 159 4.336889 AGATCTCACACTTTTTCCGTCA 57.663 40.909 0.00 0.00 0.00 4.35
159 160 4.899502 AGATCTCACACTTTTTCCGTCAT 58.100 39.130 0.00 0.00 0.00 3.06
162 163 3.807622 TCTCACACTTTTTCCGTCATGTC 59.192 43.478 0.00 0.00 0.00 3.06
169 170 2.762535 TTTCCGTCATGTCCTTCTCC 57.237 50.000 0.00 0.00 0.00 3.71
170 171 0.530744 TTCCGTCATGTCCTTCTCCG 59.469 55.000 0.00 0.00 0.00 4.63
171 172 0.323087 TCCGTCATGTCCTTCTCCGA 60.323 55.000 0.00 0.00 0.00 4.55
172 173 0.747255 CCGTCATGTCCTTCTCCGAT 59.253 55.000 0.00 0.00 0.00 4.18
198 199 4.627035 ACGTGTAATCCGCATCATATCATG 59.373 41.667 0.00 0.00 0.00 3.07
201 202 3.726557 AATCCGCATCATATCATGGGT 57.273 42.857 3.04 0.00 35.44 4.51
221 222 5.606749 TGGGTGTCTATATGTTCCAGCTAAT 59.393 40.000 0.00 0.00 0.00 1.73
283 284 2.225491 TGCTGCTTTACACGAAACCATC 59.775 45.455 0.00 0.00 0.00 3.51
284 285 2.414161 GCTGCTTTACACGAAACCATCC 60.414 50.000 0.00 0.00 0.00 3.51
302 307 1.948834 TCCGACACGTCAACTAACTGA 59.051 47.619 0.00 0.00 0.00 3.41
304 309 2.915463 CCGACACGTCAACTAACTGATC 59.085 50.000 0.00 0.00 0.00 2.92
305 310 2.915463 CGACACGTCAACTAACTGATCC 59.085 50.000 0.00 0.00 0.00 3.36
306 311 3.610821 CGACACGTCAACTAACTGATCCA 60.611 47.826 0.00 0.00 0.00 3.41
310 315 2.535984 CGTCAACTAACTGATCCATCGC 59.464 50.000 0.00 0.00 0.00 4.58
312 317 1.860950 CAACTAACTGATCCATCGCCG 59.139 52.381 0.00 0.00 0.00 6.46
313 318 0.249489 ACTAACTGATCCATCGCCGC 60.249 55.000 0.00 0.00 0.00 6.53
314 319 0.249447 CTAACTGATCCATCGCCGCA 60.249 55.000 0.00 0.00 0.00 5.69
315 320 0.176910 TAACTGATCCATCGCCGCAA 59.823 50.000 0.00 0.00 0.00 4.85
316 321 0.676466 AACTGATCCATCGCCGCAAA 60.676 50.000 0.00 0.00 0.00 3.68
317 322 1.353103 CTGATCCATCGCCGCAAAC 59.647 57.895 0.00 0.00 0.00 2.93
318 323 2.051804 CTGATCCATCGCCGCAAACC 62.052 60.000 0.00 0.00 0.00 3.27
319 324 2.045438 ATCCATCGCCGCAAACCA 60.045 55.556 0.00 0.00 0.00 3.67
320 325 1.653094 GATCCATCGCCGCAAACCAA 61.653 55.000 0.00 0.00 0.00 3.67
321 326 1.933115 ATCCATCGCCGCAAACCAAC 61.933 55.000 0.00 0.00 0.00 3.77
322 327 2.126502 CATCGCCGCAAACCAACC 60.127 61.111 0.00 0.00 0.00 3.77
323 328 2.282180 ATCGCCGCAAACCAACCT 60.282 55.556 0.00 0.00 0.00 3.50
324 329 1.003112 ATCGCCGCAAACCAACCTA 60.003 52.632 0.00 0.00 0.00 3.08
325 330 0.393808 ATCGCCGCAAACCAACCTAT 60.394 50.000 0.00 0.00 0.00 2.57
326 331 1.022451 TCGCCGCAAACCAACCTATC 61.022 55.000 0.00 0.00 0.00 2.08
327 332 1.302383 CGCCGCAAACCAACCTATCA 61.302 55.000 0.00 0.00 0.00 2.15
328 333 0.885196 GCCGCAAACCAACCTATCAA 59.115 50.000 0.00 0.00 0.00 2.57
329 334 1.135402 GCCGCAAACCAACCTATCAAG 60.135 52.381 0.00 0.00 0.00 3.02
330 335 2.432444 CCGCAAACCAACCTATCAAGA 58.568 47.619 0.00 0.00 0.00 3.02
331 336 3.016736 CCGCAAACCAACCTATCAAGAT 58.983 45.455 0.00 0.00 0.00 2.40
332 337 3.181497 CCGCAAACCAACCTATCAAGATG 60.181 47.826 0.00 0.00 0.00 2.90
333 338 3.689161 CGCAAACCAACCTATCAAGATGA 59.311 43.478 0.00 0.00 0.00 2.92
334 339 4.336433 CGCAAACCAACCTATCAAGATGAT 59.664 41.667 0.00 0.00 40.72 2.45
335 340 5.527214 CGCAAACCAACCTATCAAGATGATA 59.473 40.000 0.58 0.58 38.26 2.15
336 341 6.205464 CGCAAACCAACCTATCAAGATGATAT 59.795 38.462 0.85 0.00 38.54 1.63
337 342 7.387673 CGCAAACCAACCTATCAAGATGATATA 59.612 37.037 0.85 0.00 38.54 0.86
338 343 8.507249 GCAAACCAACCTATCAAGATGATATAC 58.493 37.037 0.85 0.00 38.54 1.47
339 344 9.003658 CAAACCAACCTATCAAGATGATATACC 57.996 37.037 0.85 0.00 38.54 2.73
340 345 6.936279 ACCAACCTATCAAGATGATATACCG 58.064 40.000 0.85 0.00 38.54 4.02
341 346 6.724441 ACCAACCTATCAAGATGATATACCGA 59.276 38.462 0.85 0.00 38.54 4.69
342 347 7.400339 ACCAACCTATCAAGATGATATACCGAT 59.600 37.037 0.85 0.00 38.54 4.18
343 348 8.260818 CCAACCTATCAAGATGATATACCGATT 58.739 37.037 0.85 0.00 38.54 3.34
344 349 9.307121 CAACCTATCAAGATGATATACCGATTC 57.693 37.037 0.85 0.00 38.54 2.52
345 350 8.595362 ACCTATCAAGATGATATACCGATTCA 57.405 34.615 0.85 0.00 38.54 2.57
346 351 8.690884 ACCTATCAAGATGATATACCGATTCAG 58.309 37.037 0.85 0.00 38.54 3.02
347 352 8.690884 CCTATCAAGATGATATACCGATTCAGT 58.309 37.037 0.85 0.00 38.54 3.41
350 355 9.784531 ATCAAGATGATATACCGATTCAGTTTT 57.215 29.630 0.00 0.00 34.88 2.43
351 356 9.613428 TCAAGATGATATACCGATTCAGTTTTT 57.387 29.630 0.00 0.00 0.00 1.94
352 357 9.869844 CAAGATGATATACCGATTCAGTTTTTC 57.130 33.333 0.00 0.00 0.00 2.29
353 358 9.613428 AAGATGATATACCGATTCAGTTTTTCA 57.387 29.630 0.00 0.00 0.00 2.69
354 359 9.613428 AGATGATATACCGATTCAGTTTTTCAA 57.387 29.630 0.00 0.00 0.00 2.69
357 362 8.673711 TGATATACCGATTCAGTTTTTCAAAGG 58.326 33.333 0.00 0.00 0.00 3.11
358 363 6.894339 ATACCGATTCAGTTTTTCAAAGGT 57.106 33.333 0.00 0.00 0.00 3.50
359 364 4.932146 ACCGATTCAGTTTTTCAAAGGTG 58.068 39.130 0.00 0.00 0.00 4.00
360 365 4.401202 ACCGATTCAGTTTTTCAAAGGTGT 59.599 37.500 0.00 0.00 0.00 4.16
361 366 5.105513 ACCGATTCAGTTTTTCAAAGGTGTT 60.106 36.000 0.00 0.00 0.00 3.32
362 367 5.810074 CCGATTCAGTTTTTCAAAGGTGTTT 59.190 36.000 0.00 0.00 0.00 2.83
363 368 6.975772 CCGATTCAGTTTTTCAAAGGTGTTTA 59.024 34.615 0.00 0.00 0.00 2.01
364 369 7.651704 CCGATTCAGTTTTTCAAAGGTGTTTAT 59.348 33.333 0.00 0.00 0.00 1.40
365 370 9.672086 CGATTCAGTTTTTCAAAGGTGTTTATA 57.328 29.630 0.00 0.00 0.00 0.98
381 386 9.511144 AGGTGTTTATAAAAATAAAGTATGCGC 57.489 29.630 0.00 0.00 0.00 6.09
382 387 8.466026 GGTGTTTATAAAAATAAAGTATGCGCG 58.534 33.333 0.00 0.00 0.00 6.86
383 388 9.002080 GTGTTTATAAAAATAAAGTATGCGCGT 57.998 29.630 8.43 7.55 0.00 6.01
387 392 7.775729 ATAAAAATAAAGTATGCGCGTATGC 57.224 32.000 20.45 18.59 37.91 3.14
402 407 5.191595 GCGTATGCGTTTATAGGAATGAG 57.808 43.478 4.81 0.00 40.81 2.90
403 408 4.684703 GCGTATGCGTTTATAGGAATGAGT 59.315 41.667 4.81 0.00 40.81 3.41
404 409 5.388475 GCGTATGCGTTTATAGGAATGAGTG 60.388 44.000 4.81 0.00 40.81 3.51
405 410 5.690409 CGTATGCGTTTATAGGAATGAGTGT 59.310 40.000 0.00 0.00 0.00 3.55
406 411 6.859508 CGTATGCGTTTATAGGAATGAGTGTA 59.140 38.462 0.00 0.00 0.00 2.90
407 412 7.541091 CGTATGCGTTTATAGGAATGAGTGTAT 59.459 37.037 0.00 0.00 0.00 2.29
408 413 7.658179 ATGCGTTTATAGGAATGAGTGTATG 57.342 36.000 0.00 0.00 0.00 2.39
409 414 6.578944 TGCGTTTATAGGAATGAGTGTATGT 58.421 36.000 0.00 0.00 0.00 2.29
410 415 6.478673 TGCGTTTATAGGAATGAGTGTATGTG 59.521 38.462 0.00 0.00 0.00 3.21
411 416 6.564125 GCGTTTATAGGAATGAGTGTATGTGC 60.564 42.308 0.00 0.00 0.00 4.57
412 417 6.345803 CGTTTATAGGAATGAGTGTATGTGCG 60.346 42.308 0.00 0.00 0.00 5.34
413 418 4.672587 ATAGGAATGAGTGTATGTGCGT 57.327 40.909 0.00 0.00 0.00 5.24
414 419 5.784578 ATAGGAATGAGTGTATGTGCGTA 57.215 39.130 0.00 0.00 0.00 4.42
415 420 4.672587 AGGAATGAGTGTATGTGCGTAT 57.327 40.909 0.00 0.00 0.00 3.06
416 421 5.784578 AGGAATGAGTGTATGTGCGTATA 57.215 39.130 0.00 0.00 0.00 1.47
417 422 6.346477 AGGAATGAGTGTATGTGCGTATAT 57.654 37.500 0.00 0.00 0.00 0.86
418 423 7.462571 AGGAATGAGTGTATGTGCGTATATA 57.537 36.000 0.00 0.00 0.00 0.86
419 424 8.067751 AGGAATGAGTGTATGTGCGTATATAT 57.932 34.615 0.00 0.00 0.00 0.86
420 425 7.976175 AGGAATGAGTGTATGTGCGTATATATG 59.024 37.037 0.00 0.00 0.00 1.78
421 426 7.973944 GGAATGAGTGTATGTGCGTATATATGA 59.026 37.037 6.12 0.00 0.00 2.15
422 427 8.917415 AATGAGTGTATGTGCGTATATATGAG 57.083 34.615 6.12 0.00 0.00 2.90
423 428 6.322491 TGAGTGTATGTGCGTATATATGAGC 58.678 40.000 6.12 1.54 0.00 4.26
424 429 5.332707 AGTGTATGTGCGTATATATGAGCG 58.667 41.667 6.12 0.00 0.00 5.03
429 434 2.703190 GCGTATATATGAGCGCTTGC 57.297 50.000 13.26 0.00 45.48 4.01
430 435 1.992667 GCGTATATATGAGCGCTTGCA 59.007 47.619 13.26 6.25 45.48 4.08
431 436 2.604914 GCGTATATATGAGCGCTTGCAT 59.395 45.455 13.26 14.41 45.48 3.96
432 437 3.302092 GCGTATATATGAGCGCTTGCATC 60.302 47.826 13.26 0.00 45.48 3.91
433 438 4.108336 CGTATATATGAGCGCTTGCATCT 58.892 43.478 13.26 6.79 42.66 2.90
434 439 4.027050 CGTATATATGAGCGCTTGCATCTG 60.027 45.833 13.26 0.00 42.66 2.90
435 440 2.251409 ATATGAGCGCTTGCATCTGT 57.749 45.000 13.26 0.00 42.66 3.41
436 441 2.888834 TATGAGCGCTTGCATCTGTA 57.111 45.000 13.26 0.00 42.66 2.74
437 442 1.293924 ATGAGCGCTTGCATCTGTAC 58.706 50.000 13.26 0.00 42.66 2.90
438 443 0.247460 TGAGCGCTTGCATCTGTACT 59.753 50.000 13.26 0.00 42.66 2.73
439 444 1.476488 TGAGCGCTTGCATCTGTACTA 59.524 47.619 13.26 0.00 42.66 1.82
440 445 2.101415 TGAGCGCTTGCATCTGTACTAT 59.899 45.455 13.26 0.00 42.66 2.12
441 446 2.474359 GAGCGCTTGCATCTGTACTATG 59.526 50.000 13.26 0.00 42.66 2.23
442 447 2.159043 AGCGCTTGCATCTGTACTATGT 60.159 45.455 2.64 0.00 42.66 2.29
443 448 2.609459 GCGCTTGCATCTGTACTATGTT 59.391 45.455 0.00 0.00 38.92 2.71
444 449 3.802139 GCGCTTGCATCTGTACTATGTTA 59.198 43.478 0.00 0.00 38.92 2.41
445 450 4.270084 GCGCTTGCATCTGTACTATGTTAA 59.730 41.667 0.00 5.91 38.92 2.01
446 451 5.220586 GCGCTTGCATCTGTACTATGTTAAA 60.221 40.000 0.00 3.65 38.92 1.52
447 452 6.674519 GCGCTTGCATCTGTACTATGTTAAAA 60.675 38.462 0.00 0.00 38.92 1.52
448 453 7.240674 CGCTTGCATCTGTACTATGTTAAAAA 58.759 34.615 9.55 0.23 0.00 1.94
466 471 2.463047 AAAAGGGTGTGTTTAGGGCA 57.537 45.000 0.00 0.00 0.00 5.36
467 472 1.699730 AAAGGGTGTGTTTAGGGCAC 58.300 50.000 0.00 0.00 37.37 5.01
468 473 0.553819 AAGGGTGTGTTTAGGGCACA 59.446 50.000 0.00 0.00 43.60 4.57
469 474 0.777446 AGGGTGTGTTTAGGGCACAT 59.223 50.000 1.42 0.00 46.66 3.21
470 475 1.173913 GGGTGTGTTTAGGGCACATC 58.826 55.000 1.42 0.96 46.66 3.06
471 476 1.271926 GGGTGTGTTTAGGGCACATCT 60.272 52.381 8.33 0.00 46.66 2.90
472 477 2.026636 GGGTGTGTTTAGGGCACATCTA 60.027 50.000 8.33 0.00 46.66 1.98
473 478 3.270877 GGTGTGTTTAGGGCACATCTAG 58.729 50.000 1.42 0.00 46.66 2.43
474 479 3.055385 GGTGTGTTTAGGGCACATCTAGA 60.055 47.826 0.00 0.00 46.66 2.43
475 480 4.384208 GGTGTGTTTAGGGCACATCTAGAT 60.384 45.833 0.00 0.00 46.66 1.98
476 481 4.811557 GTGTGTTTAGGGCACATCTAGATC 59.188 45.833 1.03 0.00 46.66 2.75
477 482 4.716784 TGTGTTTAGGGCACATCTAGATCT 59.283 41.667 1.03 0.00 41.32 2.75
478 483 5.053145 GTGTTTAGGGCACATCTAGATCTG 58.947 45.833 5.18 2.59 36.88 2.90
479 484 4.061596 GTTTAGGGCACATCTAGATCTGC 58.938 47.826 21.06 21.06 32.87 4.26
480 485 2.100128 AGGGCACATCTAGATCTGCT 57.900 50.000 25.96 10.10 33.92 4.24
481 486 1.969923 AGGGCACATCTAGATCTGCTC 59.030 52.381 25.96 23.90 34.01 4.26
482 487 1.969923 GGGCACATCTAGATCTGCTCT 59.030 52.381 25.96 0.00 31.58 4.09
483 488 3.161067 GGGCACATCTAGATCTGCTCTA 58.839 50.000 25.96 0.00 31.58 2.43
484 489 3.576118 GGGCACATCTAGATCTGCTCTAA 59.424 47.826 25.96 0.00 36.02 2.10
485 490 4.222588 GGGCACATCTAGATCTGCTCTAAT 59.777 45.833 25.96 0.00 36.02 1.73
486 491 5.279910 GGGCACATCTAGATCTGCTCTAATT 60.280 44.000 25.96 0.00 36.02 1.40
487 492 5.868801 GGCACATCTAGATCTGCTCTAATTC 59.131 44.000 25.96 9.33 36.02 2.17
488 493 6.295236 GGCACATCTAGATCTGCTCTAATTCT 60.295 42.308 25.96 0.00 36.02 2.40
489 494 7.093988 GGCACATCTAGATCTGCTCTAATTCTA 60.094 40.741 25.96 0.00 36.02 2.10
490 495 8.303156 GCACATCTAGATCTGCTCTAATTCTAA 58.697 37.037 21.69 0.00 36.02 2.10
491 496 9.844790 CACATCTAGATCTGCTCTAATTCTAAG 57.155 37.037 5.18 0.00 36.02 2.18
492 497 9.586732 ACATCTAGATCTGCTCTAATTCTAAGT 57.413 33.333 5.18 0.00 36.02 2.24
493 498 9.844790 CATCTAGATCTGCTCTAATTCTAAGTG 57.155 37.037 5.18 0.00 36.02 3.16
494 499 9.806448 ATCTAGATCTGCTCTAATTCTAAGTGA 57.194 33.333 5.18 0.00 36.02 3.41
495 500 9.283768 TCTAGATCTGCTCTAATTCTAAGTGAG 57.716 37.037 5.18 0.00 36.02 3.51
496 501 7.896383 AGATCTGCTCTAATTCTAAGTGAGT 57.104 36.000 0.00 0.00 30.26 3.41
497 502 7.715657 AGATCTGCTCTAATTCTAAGTGAGTG 58.284 38.462 0.00 0.00 30.26 3.51
498 503 7.559533 AGATCTGCTCTAATTCTAAGTGAGTGA 59.440 37.037 0.00 0.00 30.26 3.41
499 504 7.468141 TCTGCTCTAATTCTAAGTGAGTGAA 57.532 36.000 0.00 0.00 0.00 3.18
500 505 8.072321 TCTGCTCTAATTCTAAGTGAGTGAAT 57.928 34.615 0.00 0.00 32.52 2.57
501 506 8.194104 TCTGCTCTAATTCTAAGTGAGTGAATC 58.806 37.037 0.00 0.00 31.03 2.52
502 507 7.840931 TGCTCTAATTCTAAGTGAGTGAATCA 58.159 34.615 0.00 0.00 34.79 2.57
503 508 8.314021 TGCTCTAATTCTAAGTGAGTGAATCAA 58.686 33.333 0.00 0.00 40.43 2.57
504 509 8.816144 GCTCTAATTCTAAGTGAGTGAATCAAG 58.184 37.037 0.00 0.00 40.43 3.02
505 510 8.709386 TCTAATTCTAAGTGAGTGAATCAAGC 57.291 34.615 0.00 0.00 40.43 4.01
506 511 8.314021 TCTAATTCTAAGTGAGTGAATCAAGCA 58.686 33.333 0.00 0.00 40.43 3.91
507 512 7.934855 AATTCTAAGTGAGTGAATCAAGCAT 57.065 32.000 0.00 0.00 40.43 3.79
509 514 9.453572 AATTCTAAGTGAGTGAATCAAGCATAA 57.546 29.630 0.00 0.00 40.43 1.90
510 515 8.846943 TTCTAAGTGAGTGAATCAAGCATAAA 57.153 30.769 0.00 0.00 40.43 1.40
511 516 8.846943 TCTAAGTGAGTGAATCAAGCATAAAA 57.153 30.769 0.00 0.00 40.43 1.52
512 517 9.283768 TCTAAGTGAGTGAATCAAGCATAAAAA 57.716 29.630 0.00 0.00 40.43 1.94
513 518 9.552114 CTAAGTGAGTGAATCAAGCATAAAAAG 57.448 33.333 0.00 0.00 40.43 2.27
514 519 7.750229 AGTGAGTGAATCAAGCATAAAAAGA 57.250 32.000 0.00 0.00 40.43 2.52
515 520 8.169977 AGTGAGTGAATCAAGCATAAAAAGAA 57.830 30.769 0.00 0.00 40.43 2.52
516 521 8.632679 AGTGAGTGAATCAAGCATAAAAAGAAA 58.367 29.630 0.00 0.00 40.43 2.52
517 522 9.248291 GTGAGTGAATCAAGCATAAAAAGAAAA 57.752 29.630 0.00 0.00 40.43 2.29
518 523 9.814899 TGAGTGAATCAAGCATAAAAAGAAAAA 57.185 25.926 0.00 0.00 34.02 1.94
577 582 7.719778 TCAATGACATATGACTTAGATGTGC 57.280 36.000 10.38 0.00 41.09 4.57
578 583 7.274447 TCAATGACATATGACTTAGATGTGCA 58.726 34.615 10.38 0.00 41.09 4.57
579 584 7.769970 TCAATGACATATGACTTAGATGTGCAA 59.230 33.333 10.38 0.00 41.09 4.08
580 585 8.565416 CAATGACATATGACTTAGATGTGCAAT 58.435 33.333 10.38 0.00 41.09 3.56
581 586 9.783081 AATGACATATGACTTAGATGTGCAATA 57.217 29.630 10.38 0.00 41.09 1.90
582 587 8.593492 TGACATATGACTTAGATGTGCAATAC 57.407 34.615 10.38 0.00 41.09 1.89
583 588 8.424133 TGACATATGACTTAGATGTGCAATACT 58.576 33.333 10.38 0.00 41.09 2.12
584 589 9.265901 GACATATGACTTAGATGTGCAATACTT 57.734 33.333 10.38 0.00 41.09 2.24
588 593 8.613060 ATGACTTAGATGTGCAATACTTATGG 57.387 34.615 0.00 0.00 0.00 2.74
589 594 6.483307 TGACTTAGATGTGCAATACTTATGGC 59.517 38.462 0.00 0.00 33.16 4.40
590 595 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
654 659 0.321919 GCCAGCATGTCAACCTCTGA 60.322 55.000 0.00 0.00 0.00 3.27
665 670 1.399440 CAACCTCTGAATGCATGTCGG 59.601 52.381 0.00 5.70 0.00 4.79
667 672 0.463295 CCTCTGAATGCATGTCGGCT 60.463 55.000 0.00 0.00 34.04 5.52
668 673 0.935898 CTCTGAATGCATGTCGGCTC 59.064 55.000 0.00 0.00 34.04 4.70
669 674 0.249955 TCTGAATGCATGTCGGCTCA 59.750 50.000 0.00 0.00 34.04 4.26
670 675 1.134310 TCTGAATGCATGTCGGCTCAT 60.134 47.619 0.00 0.00 34.04 2.90
671 676 1.002792 CTGAATGCATGTCGGCTCATG 60.003 52.381 0.00 12.82 45.37 3.07
705 710 6.255453 CCATGCAACGAAAGAAAGAAAGAAAA 59.745 34.615 0.00 0.00 0.00 2.29
706 711 6.869421 TGCAACGAAAGAAAGAAAGAAAAG 57.131 33.333 0.00 0.00 0.00 2.27
707 712 5.288472 TGCAACGAAAGAAAGAAAGAAAAGC 59.712 36.000 0.00 0.00 0.00 3.51
708 713 5.516696 GCAACGAAAGAAAGAAAGAAAAGCT 59.483 36.000 0.00 0.00 0.00 3.74
709 714 6.291322 GCAACGAAAGAAAGAAAGAAAAGCTC 60.291 38.462 0.00 0.00 0.00 4.09
710 715 5.822278 ACGAAAGAAAGAAAGAAAAGCTCC 58.178 37.500 0.00 0.00 0.00 4.70
711 716 5.590663 ACGAAAGAAAGAAAGAAAAGCTCCT 59.409 36.000 0.00 0.00 0.00 3.69
712 717 6.095580 ACGAAAGAAAGAAAGAAAAGCTCCTT 59.904 34.615 0.00 0.00 0.00 3.36
713 718 6.634837 CGAAAGAAAGAAAGAAAAGCTCCTTC 59.365 38.462 0.00 0.00 0.00 3.46
714 719 7.467947 CGAAAGAAAGAAAGAAAAGCTCCTTCT 60.468 37.037 5.41 5.41 36.55 2.85
715 720 7.652524 AAGAAAGAAAGAAAAGCTCCTTCTT 57.347 32.000 14.89 14.89 43.69 2.52
716 721 7.270757 AGAAAGAAAGAAAAGCTCCTTCTTC 57.729 36.000 18.95 13.89 41.86 2.87
717 722 6.264292 AGAAAGAAAGAAAAGCTCCTTCTTCC 59.736 38.462 18.95 10.52 41.86 3.46
718 723 5.053978 AGAAAGAAAAGCTCCTTCTTCCA 57.946 39.130 18.95 0.00 41.24 3.53
719 724 4.824537 AGAAAGAAAAGCTCCTTCTTCCAC 59.175 41.667 18.95 14.45 41.24 4.02
756 761 2.584418 CGAGCATCCTCACGGCTG 60.584 66.667 0.00 0.00 38.15 4.85
800 819 4.730657 ACGTACGAGAAAGACGATTCATT 58.269 39.130 24.41 0.00 39.81 2.57
810 829 4.007282 AGACGATTCATTGATGCAAACG 57.993 40.909 0.00 0.00 0.00 3.60
814 833 2.610219 TTCATTGATGCAAACGTCCG 57.390 45.000 0.00 0.00 0.00 4.79
815 834 0.167908 TCATTGATGCAAACGTCCGC 59.832 50.000 0.00 2.35 0.00 5.54
873 896 5.300034 CACATGAGCTGTTATCTCTCTCTCT 59.700 44.000 0.00 0.00 35.29 3.10
874 897 5.532406 ACATGAGCTGTTATCTCTCTCTCTC 59.468 44.000 0.00 0.00 32.90 3.20
875 898 5.372343 TGAGCTGTTATCTCTCTCTCTCT 57.628 43.478 0.00 0.00 0.00 3.10
876 899 5.368145 TGAGCTGTTATCTCTCTCTCTCTC 58.632 45.833 0.00 0.00 0.00 3.20
877 900 5.130975 TGAGCTGTTATCTCTCTCTCTCTCT 59.869 44.000 0.00 0.00 0.00 3.10
878 901 5.615289 AGCTGTTATCTCTCTCTCTCTCTC 58.385 45.833 0.00 0.00 0.00 3.20
879 902 5.367937 AGCTGTTATCTCTCTCTCTCTCTCT 59.632 44.000 0.00 0.00 0.00 3.10
880 903 5.698545 GCTGTTATCTCTCTCTCTCTCTCTC 59.301 48.000 0.00 0.00 0.00 3.20
881 904 6.463614 GCTGTTATCTCTCTCTCTCTCTCTCT 60.464 46.154 0.00 0.00 0.00 3.10
882 905 7.055667 TGTTATCTCTCTCTCTCTCTCTCTC 57.944 44.000 0.00 0.00 0.00 3.20
883 906 6.841229 TGTTATCTCTCTCTCTCTCTCTCTCT 59.159 42.308 0.00 0.00 0.00 3.10
884 907 7.014711 TGTTATCTCTCTCTCTCTCTCTCTCTC 59.985 44.444 0.00 0.00 0.00 3.20
885 908 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
886 909 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
887 910 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
888 911 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
889 912 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
890 913 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
891 914 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
892 915 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
893 916 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
894 917 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
895 918 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
896 919 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
897 920 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
898 921 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
904 927 2.159099 TCTCTCTCTCTCTCTCACGAGC 60.159 54.545 0.00 0.00 37.19 5.03
941 964 3.135348 CAGATCTTAGCATTGTCCCTCCA 59.865 47.826 0.00 0.00 0.00 3.86
992 1015 4.142381 CCTCTCATTGACACACGTAGATCA 60.142 45.833 0.00 0.00 0.00 2.92
1007 1030 1.690893 AGATCAGCACCGCATGTCTAT 59.309 47.619 0.00 0.00 0.00 1.98
1143 1166 4.020617 CTCTTCAGTGGCCGGGCA 62.021 66.667 29.27 29.27 0.00 5.36
1267 1290 2.267961 GGAACCGGAAGCCGTGAT 59.732 61.111 9.46 0.00 46.80 3.06
1269 1292 1.079405 GAACCGGAAGCCGTGATCA 60.079 57.895 9.46 0.00 46.80 2.92
1271 1294 2.202932 CCGGAAGCCGTGATCAGG 60.203 66.667 8.47 8.47 46.80 3.86
1385 1415 7.094205 ACACAAGTTATGCTGAAAGATTAAGGG 60.094 37.037 0.00 0.00 34.07 3.95
1386 1416 6.127619 ACAAGTTATGCTGAAAGATTAAGGGC 60.128 38.462 0.00 0.00 34.07 5.19
1413 1443 4.592485 ATCTGTCCGATTACTGGATGTC 57.408 45.455 0.00 0.00 37.93 3.06
1416 1446 4.098044 TCTGTCCGATTACTGGATGTCTTC 59.902 45.833 0.00 0.00 37.93 2.87
1447 1478 4.337274 TCTTCAAAGAAGAAAACGGGGTTC 59.663 41.667 6.97 0.00 30.73 3.62
1448 1479 2.953648 TCAAAGAAGAAAACGGGGTTCC 59.046 45.455 0.00 0.00 0.00 3.62
1467 1498 6.931840 GGGTTCCATTATTGATCTAGACTGTC 59.068 42.308 0.00 0.00 0.00 3.51
1512 1545 3.609373 CGCGTCTCAGACCGTTAAATAAA 59.391 43.478 0.00 0.00 0.00 1.40
1669 4873 9.606631 GAAAGATTCTAGAGATCAAAAGCCTTA 57.393 33.333 13.77 0.00 0.00 2.69
1694 4898 2.471255 CGCAAGGGGAGATGTTCAC 58.529 57.895 0.00 0.00 0.00 3.18
1696 4900 1.168714 GCAAGGGGAGATGTTCACAC 58.831 55.000 0.00 0.00 0.00 3.82
1707 4911 3.248602 AGATGTTCACACGAAAGAGTTGC 59.751 43.478 0.00 0.00 31.43 4.17
1740 4944 7.826690 GGAATATTCCTAGCAAAACTGAAACA 58.173 34.615 24.74 0.00 44.11 2.83
1795 4999 1.306226 CTCCCTTCTCCCCCGTTCT 60.306 63.158 0.00 0.00 0.00 3.01
1859 5071 4.890306 GAGCCTCCCCTCCCCTCC 62.890 77.778 0.00 0.00 0.00 4.30
1863 5075 4.179599 CTCCCCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1868 5080 4.179599 CTCCCCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1920 5132 4.612412 AGCGTCCGTTGGGCGAAA 62.612 61.111 14.85 0.00 44.77 3.46
1961 5173 2.683465 GGGGCCTCTCATTCTGCCA 61.683 63.158 0.84 0.00 45.83 4.92
1966 5178 1.404391 GCCTCTCATTCTGCCATGTTG 59.596 52.381 0.00 0.00 0.00 3.33
2013 5225 4.195334 ATGGGGCATGGAGTCCGC 62.195 66.667 4.30 2.27 45.54 5.54
2054 5266 2.105128 CCGGATCCGTCAGCTGTC 59.895 66.667 31.22 7.33 37.81 3.51
2068 5280 4.314440 TGTCGTGCTGGGAGGTGC 62.314 66.667 0.00 0.00 0.00 5.01
2092 5304 3.415087 GCTGCTGAGGGGGTGGAT 61.415 66.667 0.00 0.00 0.00 3.41
2093 5305 2.593978 CTGCTGAGGGGGTGGATG 59.406 66.667 0.00 0.00 0.00 3.51
2094 5306 2.204136 TGCTGAGGGGGTGGATGT 60.204 61.111 0.00 0.00 0.00 3.06
2095 5307 2.273449 GCTGAGGGGGTGGATGTG 59.727 66.667 0.00 0.00 0.00 3.21
2096 5308 2.300967 GCTGAGGGGGTGGATGTGA 61.301 63.158 0.00 0.00 0.00 3.58
2097 5309 1.604378 CTGAGGGGGTGGATGTGAC 59.396 63.158 0.00 0.00 0.00 3.67
2098 5310 0.911525 CTGAGGGGGTGGATGTGACT 60.912 60.000 0.00 0.00 0.00 3.41
2099 5311 0.475632 TGAGGGGGTGGATGTGACTT 60.476 55.000 0.00 0.00 0.00 3.01
2100 5312 0.035056 GAGGGGGTGGATGTGACTTG 60.035 60.000 0.00 0.00 0.00 3.16
2101 5313 0.475632 AGGGGGTGGATGTGACTTGA 60.476 55.000 0.00 0.00 0.00 3.02
2102 5314 0.404040 GGGGGTGGATGTGACTTGAA 59.596 55.000 0.00 0.00 0.00 2.69
2103 5315 1.614317 GGGGGTGGATGTGACTTGAAG 60.614 57.143 0.00 0.00 0.00 3.02
2104 5316 1.614317 GGGGTGGATGTGACTTGAAGG 60.614 57.143 0.00 0.00 0.00 3.46
2105 5317 1.614317 GGGTGGATGTGACTTGAAGGG 60.614 57.143 0.00 0.00 0.00 3.95
2157 5829 2.037144 GTTACTCCTGGCGGGATCTAA 58.963 52.381 17.09 11.57 44.15 2.10
2206 5880 0.463654 TGCGCACTTTGTCCTCACTT 60.464 50.000 5.66 0.00 0.00 3.16
2250 5924 1.550130 GGTCGGTCACCCATCCTGAA 61.550 60.000 0.00 0.00 39.69 3.02
2257 5931 3.009143 GGTCACCCATCCTGAAACTACTT 59.991 47.826 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.282447 AGTCACGAGCTCTCTTCCCTA 59.718 52.381 12.85 0.00 0.00 3.53
2 3 0.039035 AGTCACGAGCTCTCTTCCCT 59.961 55.000 12.85 0.00 0.00 4.20
3 4 0.892063 AAGTCACGAGCTCTCTTCCC 59.108 55.000 12.85 0.00 0.00 3.97
5 6 2.983803 GTTGAAGTCACGAGCTCTCTTC 59.016 50.000 12.85 17.87 36.20 2.87
7 8 1.271102 GGTTGAAGTCACGAGCTCTCT 59.729 52.381 12.85 2.15 0.00 3.10
8 9 1.000163 TGGTTGAAGTCACGAGCTCTC 60.000 52.381 12.85 1.56 0.00 3.20
9 10 1.040646 TGGTTGAAGTCACGAGCTCT 58.959 50.000 12.85 0.00 0.00 4.09
10 11 1.795286 CTTGGTTGAAGTCACGAGCTC 59.205 52.381 2.73 2.73 0.00 4.09
11 12 1.871080 CTTGGTTGAAGTCACGAGCT 58.129 50.000 0.00 0.00 0.00 4.09
12 13 0.235926 GCTTGGTTGAAGTCACGAGC 59.764 55.000 0.00 0.00 33.73 5.03
13 14 0.868406 GGCTTGGTTGAAGTCACGAG 59.132 55.000 0.00 0.00 36.19 4.18
14 15 0.534203 GGGCTTGGTTGAAGTCACGA 60.534 55.000 0.00 0.00 38.11 4.35
15 16 0.817634 TGGGCTTGGTTGAAGTCACG 60.818 55.000 0.00 0.00 38.11 4.35
16 17 1.398692 TTGGGCTTGGTTGAAGTCAC 58.601 50.000 0.00 0.00 38.11 3.67
17 18 1.754226 GTTTGGGCTTGGTTGAAGTCA 59.246 47.619 0.00 0.00 38.11 3.41
18 19 1.068588 GGTTTGGGCTTGGTTGAAGTC 59.931 52.381 0.00 0.00 35.32 3.01
19 20 1.119684 GGTTTGGGCTTGGTTGAAGT 58.880 50.000 0.00 0.00 33.73 3.01
20 21 1.118838 TGGTTTGGGCTTGGTTGAAG 58.881 50.000 0.00 0.00 34.41 3.02
21 22 1.573108 TTGGTTTGGGCTTGGTTGAA 58.427 45.000 0.00 0.00 0.00 2.69
22 23 1.415659 CATTGGTTTGGGCTTGGTTGA 59.584 47.619 0.00 0.00 0.00 3.18
23 24 1.415659 TCATTGGTTTGGGCTTGGTTG 59.584 47.619 0.00 0.00 0.00 3.77
24 25 1.799933 TCATTGGTTTGGGCTTGGTT 58.200 45.000 0.00 0.00 0.00 3.67
25 26 1.693606 CTTCATTGGTTTGGGCTTGGT 59.306 47.619 0.00 0.00 0.00 3.67
26 27 1.002315 CCTTCATTGGTTTGGGCTTGG 59.998 52.381 0.00 0.00 0.00 3.61
27 28 1.969923 TCCTTCATTGGTTTGGGCTTG 59.030 47.619 0.00 0.00 0.00 4.01
28 29 2.250924 CTCCTTCATTGGTTTGGGCTT 58.749 47.619 0.00 0.00 0.00 4.35
29 30 1.928868 CTCCTTCATTGGTTTGGGCT 58.071 50.000 0.00 0.00 0.00 5.19
30 31 0.247460 GCTCCTTCATTGGTTTGGGC 59.753 55.000 0.00 0.00 0.00 5.36
31 32 1.547372 CTGCTCCTTCATTGGTTTGGG 59.453 52.381 0.00 0.00 0.00 4.12
32 33 1.547372 CCTGCTCCTTCATTGGTTTGG 59.453 52.381 0.00 0.00 0.00 3.28
33 34 2.242043 ACCTGCTCCTTCATTGGTTTG 58.758 47.619 0.00 0.00 0.00 2.93
34 35 2.683211 ACCTGCTCCTTCATTGGTTT 57.317 45.000 0.00 0.00 0.00 3.27
35 36 2.619074 GCTACCTGCTCCTTCATTGGTT 60.619 50.000 0.00 0.00 38.95 3.67
36 37 1.065126 GCTACCTGCTCCTTCATTGGT 60.065 52.381 0.00 0.00 38.95 3.67
37 38 1.673168 GCTACCTGCTCCTTCATTGG 58.327 55.000 0.00 0.00 38.95 3.16
48 49 3.574826 AGTACTAATGGCTAGCTACCTGC 59.425 47.826 15.72 4.75 43.29 4.85
49 50 5.183522 GGTAGTACTAATGGCTAGCTACCTG 59.816 48.000 15.72 4.67 38.78 4.00
50 51 5.163012 TGGTAGTACTAATGGCTAGCTACCT 60.163 44.000 15.72 2.03 40.56 3.08
51 52 5.048154 GTGGTAGTACTAATGGCTAGCTACC 60.048 48.000 15.72 14.72 40.45 3.18
52 53 5.769162 AGTGGTAGTACTAATGGCTAGCTAC 59.231 44.000 15.72 8.02 35.14 3.58
53 54 5.768662 CAGTGGTAGTACTAATGGCTAGCTA 59.231 44.000 15.72 9.47 35.14 3.32
54 55 4.585162 CAGTGGTAGTACTAATGGCTAGCT 59.415 45.833 15.72 0.00 35.14 3.32
55 56 4.583489 TCAGTGGTAGTACTAATGGCTAGC 59.417 45.833 13.21 6.04 34.80 3.42
56 57 6.902771 ATCAGTGGTAGTACTAATGGCTAG 57.097 41.667 13.21 0.00 0.00 3.42
57 58 8.168058 TGATATCAGTGGTAGTACTAATGGCTA 58.832 37.037 13.21 6.92 0.00 3.93
58 59 7.010771 TGATATCAGTGGTAGTACTAATGGCT 58.989 38.462 13.21 5.18 0.00 4.75
59 60 7.228314 TGATATCAGTGGTAGTACTAATGGC 57.772 40.000 13.21 3.28 0.00 4.40
60 61 9.645059 CATTGATATCAGTGGTAGTACTAATGG 57.355 37.037 18.02 0.00 30.99 3.16
63 64 8.577296 GCTCATTGATATCAGTGGTAGTACTAA 58.423 37.037 23.43 4.80 34.77 2.24
64 65 7.945109 AGCTCATTGATATCAGTGGTAGTACTA 59.055 37.037 23.43 0.00 34.77 1.82
65 66 6.780031 AGCTCATTGATATCAGTGGTAGTACT 59.220 38.462 23.43 0.00 34.77 2.73
66 67 6.987386 AGCTCATTGATATCAGTGGTAGTAC 58.013 40.000 23.43 10.15 34.77 2.73
67 68 7.094162 GCTAGCTCATTGATATCAGTGGTAGTA 60.094 40.741 23.43 11.89 34.77 1.82
68 69 6.295011 GCTAGCTCATTGATATCAGTGGTAGT 60.295 42.308 23.43 11.49 34.77 2.73
69 70 6.098679 GCTAGCTCATTGATATCAGTGGTAG 58.901 44.000 23.43 20.91 34.77 3.18
70 71 5.539955 TGCTAGCTCATTGATATCAGTGGTA 59.460 40.000 23.43 14.01 34.77 3.25
71 72 4.346127 TGCTAGCTCATTGATATCAGTGGT 59.654 41.667 23.43 13.68 34.77 4.16
72 73 4.891260 TGCTAGCTCATTGATATCAGTGG 58.109 43.478 23.43 16.42 34.77 4.00
73 74 6.856135 TTTGCTAGCTCATTGATATCAGTG 57.144 37.500 19.34 19.34 35.25 3.66
74 75 6.485984 CCTTTTGCTAGCTCATTGATATCAGT 59.514 38.462 17.23 0.00 0.00 3.41
75 76 6.485984 ACCTTTTGCTAGCTCATTGATATCAG 59.514 38.462 17.23 0.00 0.00 2.90
76 77 6.359804 ACCTTTTGCTAGCTCATTGATATCA 58.640 36.000 17.23 0.00 0.00 2.15
77 78 6.874288 ACCTTTTGCTAGCTCATTGATATC 57.126 37.500 17.23 0.00 0.00 1.63
78 79 7.651027 AAACCTTTTGCTAGCTCATTGATAT 57.349 32.000 17.23 0.00 0.00 1.63
79 80 7.394359 AGAAAACCTTTTGCTAGCTCATTGATA 59.606 33.333 17.23 0.00 0.00 2.15
80 81 5.990120 AAACCTTTTGCTAGCTCATTGAT 57.010 34.783 17.23 0.00 0.00 2.57
81 82 5.536161 AGAAAACCTTTTGCTAGCTCATTGA 59.464 36.000 17.23 0.00 0.00 2.57
82 83 5.776744 AGAAAACCTTTTGCTAGCTCATTG 58.223 37.500 17.23 4.51 0.00 2.82
83 84 6.410942 AAGAAAACCTTTTGCTAGCTCATT 57.589 33.333 17.23 0.00 0.00 2.57
84 85 6.410942 AAAGAAAACCTTTTGCTAGCTCAT 57.589 33.333 17.23 0.00 42.13 2.90
85 86 5.852282 AAAGAAAACCTTTTGCTAGCTCA 57.148 34.783 17.23 0.00 42.13 4.26
95 96 8.232913 TCACTATACAGCAAAAGAAAACCTTT 57.767 30.769 0.00 0.00 46.47 3.11
96 97 7.817418 TCACTATACAGCAAAAGAAAACCTT 57.183 32.000 0.00 0.00 36.47 3.50
97 98 7.448469 ACATCACTATACAGCAAAAGAAAACCT 59.552 33.333 0.00 0.00 0.00 3.50
98 99 7.538678 CACATCACTATACAGCAAAAGAAAACC 59.461 37.037 0.00 0.00 0.00 3.27
99 100 7.538678 CCACATCACTATACAGCAAAAGAAAAC 59.461 37.037 0.00 0.00 0.00 2.43
100 101 7.592938 CCACATCACTATACAGCAAAAGAAAA 58.407 34.615 0.00 0.00 0.00 2.29
101 102 6.349280 GCCACATCACTATACAGCAAAAGAAA 60.349 38.462 0.00 0.00 0.00 2.52
102 103 5.123820 GCCACATCACTATACAGCAAAAGAA 59.876 40.000 0.00 0.00 0.00 2.52
103 104 4.635765 GCCACATCACTATACAGCAAAAGA 59.364 41.667 0.00 0.00 0.00 2.52
104 105 4.395854 TGCCACATCACTATACAGCAAAAG 59.604 41.667 0.00 0.00 0.00 2.27
105 106 4.331108 TGCCACATCACTATACAGCAAAA 58.669 39.130 0.00 0.00 0.00 2.44
106 107 3.940852 CTGCCACATCACTATACAGCAAA 59.059 43.478 0.00 0.00 0.00 3.68
107 108 3.055167 ACTGCCACATCACTATACAGCAA 60.055 43.478 0.00 0.00 0.00 3.91
108 109 2.501316 ACTGCCACATCACTATACAGCA 59.499 45.455 0.00 0.00 0.00 4.41
109 110 3.185246 ACTGCCACATCACTATACAGC 57.815 47.619 0.00 0.00 0.00 4.40
110 111 4.758688 TGAACTGCCACATCACTATACAG 58.241 43.478 0.00 0.00 0.00 2.74
111 112 4.817318 TGAACTGCCACATCACTATACA 57.183 40.909 0.00 0.00 0.00 2.29
112 113 5.643777 AGTTTGAACTGCCACATCACTATAC 59.356 40.000 0.00 0.00 37.98 1.47
113 114 5.804639 AGTTTGAACTGCCACATCACTATA 58.195 37.500 0.00 0.00 37.98 1.31
114 115 4.655963 AGTTTGAACTGCCACATCACTAT 58.344 39.130 0.00 0.00 37.98 2.12
115 116 4.085357 AGTTTGAACTGCCACATCACTA 57.915 40.909 0.00 0.00 37.98 2.74
144 145 3.208747 AGGACATGACGGAAAAAGTGT 57.791 42.857 0.00 0.00 0.00 3.55
156 157 1.676529 GTCGATCGGAGAAGGACATGA 59.323 52.381 16.41 0.00 43.58 3.07
158 159 0.663688 CGTCGATCGGAGAAGGACAT 59.336 55.000 16.41 0.00 43.58 3.06
159 160 0.675837 ACGTCGATCGGAGAAGGACA 60.676 55.000 16.41 0.00 43.58 4.02
162 163 1.012086 TACACGTCGATCGGAGAAGG 58.988 55.000 16.41 3.95 43.58 3.46
169 170 0.590481 TGCGGATTACACGTCGATCG 60.590 55.000 9.36 9.36 46.00 3.69
170 171 1.714460 GATGCGGATTACACGTCGATC 59.286 52.381 0.00 0.00 0.00 3.69
171 172 1.066454 TGATGCGGATTACACGTCGAT 59.934 47.619 0.00 0.00 0.00 3.59
172 173 0.452585 TGATGCGGATTACACGTCGA 59.547 50.000 0.00 0.00 0.00 4.20
198 199 5.546621 TTAGCTGGAACATATAGACACCC 57.453 43.478 0.00 0.00 38.20 4.61
227 228 2.882132 GCACGGGCGCCTTAAATT 59.118 55.556 28.56 0.90 0.00 1.82
266 267 2.070783 TCGGATGGTTTCGTGTAAAGC 58.929 47.619 0.00 0.00 44.23 3.51
283 284 2.410785 TCAGTTAGTTGACGTGTCGG 57.589 50.000 0.00 0.00 0.00 4.79
284 285 2.915463 GGATCAGTTAGTTGACGTGTCG 59.085 50.000 0.00 0.00 0.00 4.35
302 307 1.677300 TTGGTTTGCGGCGATGGAT 60.677 52.632 12.98 0.00 0.00 3.41
304 309 2.126502 GTTGGTTTGCGGCGATGG 60.127 61.111 12.98 0.00 0.00 3.51
305 310 1.302383 TAGGTTGGTTTGCGGCGATG 61.302 55.000 12.98 0.00 0.00 3.84
306 311 0.393808 ATAGGTTGGTTTGCGGCGAT 60.394 50.000 12.98 0.00 0.00 4.58
310 315 2.432444 TCTTGATAGGTTGGTTTGCGG 58.568 47.619 0.00 0.00 0.00 5.69
312 317 5.841957 ATCATCTTGATAGGTTGGTTTGC 57.158 39.130 0.00 0.00 34.88 3.68
313 318 9.003658 GGTATATCATCTTGATAGGTTGGTTTG 57.996 37.037 3.83 0.00 42.04 2.93
314 319 7.878127 CGGTATATCATCTTGATAGGTTGGTTT 59.122 37.037 3.83 0.00 42.04 3.27
315 320 7.234782 TCGGTATATCATCTTGATAGGTTGGTT 59.765 37.037 3.83 0.00 42.04 3.67
316 321 6.724441 TCGGTATATCATCTTGATAGGTTGGT 59.276 38.462 3.83 0.00 42.04 3.67
317 322 7.170393 TCGGTATATCATCTTGATAGGTTGG 57.830 40.000 3.83 0.00 42.04 3.77
318 323 9.307121 GAATCGGTATATCATCTTGATAGGTTG 57.693 37.037 3.83 0.00 42.04 3.77
319 324 9.035890 TGAATCGGTATATCATCTTGATAGGTT 57.964 33.333 3.83 0.00 42.04 3.50
320 325 8.595362 TGAATCGGTATATCATCTTGATAGGT 57.405 34.615 3.83 0.00 42.04 3.08
321 326 8.690884 ACTGAATCGGTATATCATCTTGATAGG 58.309 37.037 0.00 0.00 42.04 2.57
324 329 9.784531 AAAACTGAATCGGTATATCATCTTGAT 57.215 29.630 0.00 0.00 40.72 2.57
325 330 9.613428 AAAAACTGAATCGGTATATCATCTTGA 57.387 29.630 0.00 0.00 0.00 3.02
326 331 9.869844 GAAAAACTGAATCGGTATATCATCTTG 57.130 33.333 0.00 0.00 0.00 3.02
327 332 9.613428 TGAAAAACTGAATCGGTATATCATCTT 57.387 29.630 0.00 0.00 0.00 2.40
328 333 9.613428 TTGAAAAACTGAATCGGTATATCATCT 57.387 29.630 0.00 0.00 0.00 2.90
331 336 8.673711 CCTTTGAAAAACTGAATCGGTATATCA 58.326 33.333 0.00 0.00 0.00 2.15
332 337 8.674607 ACCTTTGAAAAACTGAATCGGTATATC 58.325 33.333 0.00 0.00 0.00 1.63
333 338 8.458843 CACCTTTGAAAAACTGAATCGGTATAT 58.541 33.333 0.00 0.00 0.00 0.86
334 339 7.446013 ACACCTTTGAAAAACTGAATCGGTATA 59.554 33.333 0.00 0.00 0.00 1.47
335 340 6.264518 ACACCTTTGAAAAACTGAATCGGTAT 59.735 34.615 0.00 0.00 0.00 2.73
336 341 5.591067 ACACCTTTGAAAAACTGAATCGGTA 59.409 36.000 0.00 0.00 0.00 4.02
337 342 4.401202 ACACCTTTGAAAAACTGAATCGGT 59.599 37.500 0.00 0.00 0.00 4.69
338 343 4.932146 ACACCTTTGAAAAACTGAATCGG 58.068 39.130 0.00 0.00 0.00 4.18
339 344 6.885735 AAACACCTTTGAAAAACTGAATCG 57.114 33.333 0.00 0.00 0.00 3.34
355 360 9.511144 GCGCATACTTTATTTTTATAAACACCT 57.489 29.630 0.30 0.00 0.00 4.00
356 361 8.466026 CGCGCATACTTTATTTTTATAAACACC 58.534 33.333 8.75 0.00 0.00 4.16
357 362 9.002080 ACGCGCATACTTTATTTTTATAAACAC 57.998 29.630 5.73 0.00 0.00 3.32
361 366 9.320406 GCATACGCGCATACTTTATTTTTATAA 57.680 29.630 5.73 0.00 0.00 0.98
362 367 8.868744 GCATACGCGCATACTTTATTTTTATA 57.131 30.769 5.73 0.00 0.00 0.98
363 368 7.775729 GCATACGCGCATACTTTATTTTTAT 57.224 32.000 5.73 0.00 0.00 1.40
380 385 4.684703 ACTCATTCCTATAAACGCATACGC 59.315 41.667 0.00 0.00 45.53 4.42
382 387 8.648097 CATACACTCATTCCTATAAACGCATAC 58.352 37.037 0.00 0.00 0.00 2.39
383 388 8.364894 ACATACACTCATTCCTATAAACGCATA 58.635 33.333 0.00 0.00 0.00 3.14
384 389 7.171508 CACATACACTCATTCCTATAAACGCAT 59.828 37.037 0.00 0.00 0.00 4.73
385 390 6.478673 CACATACACTCATTCCTATAAACGCA 59.521 38.462 0.00 0.00 0.00 5.24
386 391 6.564125 GCACATACACTCATTCCTATAAACGC 60.564 42.308 0.00 0.00 0.00 4.84
387 392 6.345803 CGCACATACACTCATTCCTATAAACG 60.346 42.308 0.00 0.00 0.00 3.60
388 393 6.479001 ACGCACATACACTCATTCCTATAAAC 59.521 38.462 0.00 0.00 0.00 2.01
389 394 6.578944 ACGCACATACACTCATTCCTATAAA 58.421 36.000 0.00 0.00 0.00 1.40
390 395 6.156748 ACGCACATACACTCATTCCTATAA 57.843 37.500 0.00 0.00 0.00 0.98
391 396 5.784578 ACGCACATACACTCATTCCTATA 57.215 39.130 0.00 0.00 0.00 1.31
392 397 4.672587 ACGCACATACACTCATTCCTAT 57.327 40.909 0.00 0.00 0.00 2.57
393 398 5.784578 ATACGCACATACACTCATTCCTA 57.215 39.130 0.00 0.00 0.00 2.94
394 399 4.672587 ATACGCACATACACTCATTCCT 57.327 40.909 0.00 0.00 0.00 3.36
395 400 7.973944 TCATATATACGCACATACACTCATTCC 59.026 37.037 0.00 0.00 0.00 3.01
396 401 8.911247 TCATATATACGCACATACACTCATTC 57.089 34.615 0.00 0.00 0.00 2.67
397 402 7.489435 GCTCATATATACGCACATACACTCATT 59.511 37.037 1.66 0.00 0.00 2.57
398 403 6.975197 GCTCATATATACGCACATACACTCAT 59.025 38.462 1.66 0.00 0.00 2.90
399 404 6.322491 GCTCATATATACGCACATACACTCA 58.678 40.000 1.66 0.00 0.00 3.41
400 405 5.452623 CGCTCATATATACGCACATACACTC 59.547 44.000 6.32 0.00 0.00 3.51
401 406 5.332707 CGCTCATATATACGCACATACACT 58.667 41.667 6.32 0.00 0.00 3.55
402 407 5.606335 CGCTCATATATACGCACATACAC 57.394 43.478 6.32 0.00 0.00 2.90
411 416 4.027050 CAGATGCAAGCGCTCATATATACG 60.027 45.833 12.06 0.00 39.64 3.06
412 417 4.867047 ACAGATGCAAGCGCTCATATATAC 59.133 41.667 12.06 0.00 39.64 1.47
413 418 5.077134 ACAGATGCAAGCGCTCATATATA 57.923 39.130 12.06 0.00 39.64 0.86
414 419 3.935315 ACAGATGCAAGCGCTCATATAT 58.065 40.909 12.06 0.81 39.64 0.86
415 420 3.391506 ACAGATGCAAGCGCTCATATA 57.608 42.857 12.06 0.00 39.64 0.86
416 421 2.251409 ACAGATGCAAGCGCTCATAT 57.749 45.000 12.06 5.22 39.64 1.78
417 422 2.101415 AGTACAGATGCAAGCGCTCATA 59.899 45.455 12.06 0.00 39.64 2.15
418 423 1.134580 AGTACAGATGCAAGCGCTCAT 60.135 47.619 12.06 11.47 39.64 2.90
419 424 0.247460 AGTACAGATGCAAGCGCTCA 59.753 50.000 12.06 5.63 39.64 4.26
420 425 2.209838 TAGTACAGATGCAAGCGCTC 57.790 50.000 12.06 0.00 39.64 5.03
421 426 2.159043 ACATAGTACAGATGCAAGCGCT 60.159 45.455 2.64 2.64 39.64 5.92
422 427 2.205074 ACATAGTACAGATGCAAGCGC 58.795 47.619 0.00 0.00 39.24 5.92
423 428 5.966636 TTAACATAGTACAGATGCAAGCG 57.033 39.130 7.50 0.00 0.00 4.68
446 451 2.432874 GTGCCCTAAACACACCCTTTTT 59.567 45.455 0.00 0.00 37.96 1.94
447 452 2.036387 GTGCCCTAAACACACCCTTTT 58.964 47.619 0.00 0.00 37.96 2.27
448 453 1.063567 TGTGCCCTAAACACACCCTTT 60.064 47.619 0.00 0.00 42.88 3.11
449 454 0.553819 TGTGCCCTAAACACACCCTT 59.446 50.000 0.00 0.00 42.88 3.95
450 455 2.236555 TGTGCCCTAAACACACCCT 58.763 52.632 0.00 0.00 42.88 4.34
451 456 4.911901 TGTGCCCTAAACACACCC 57.088 55.556 0.00 0.00 42.88 4.61
455 460 5.053145 CAGATCTAGATGTGCCCTAAACAC 58.947 45.833 16.17 0.00 38.55 3.32
456 461 5.282055 CAGATCTAGATGTGCCCTAAACA 57.718 43.478 16.17 0.00 0.00 2.83
465 470 9.844790 CTTAGAATTAGAGCAGATCTAGATGTG 57.155 37.037 22.38 22.38 41.57 3.21
466 471 9.586732 ACTTAGAATTAGAGCAGATCTAGATGT 57.413 33.333 10.74 2.52 41.57 3.06
467 472 9.844790 CACTTAGAATTAGAGCAGATCTAGATG 57.155 37.037 10.74 0.00 41.57 2.90
468 473 9.806448 TCACTTAGAATTAGAGCAGATCTAGAT 57.194 33.333 4.47 4.47 41.57 1.98
469 474 9.283768 CTCACTTAGAATTAGAGCAGATCTAGA 57.716 37.037 0.00 0.00 41.57 2.43
470 475 9.066892 ACTCACTTAGAATTAGAGCAGATCTAG 57.933 37.037 0.00 0.00 41.57 2.43
471 476 8.845227 CACTCACTTAGAATTAGAGCAGATCTA 58.155 37.037 0.00 0.00 39.64 1.98
472 477 7.559533 TCACTCACTTAGAATTAGAGCAGATCT 59.440 37.037 0.00 0.00 42.47 2.75
473 478 7.711846 TCACTCACTTAGAATTAGAGCAGATC 58.288 38.462 0.00 0.00 0.00 2.75
474 479 7.652524 TCACTCACTTAGAATTAGAGCAGAT 57.347 36.000 0.00 0.00 0.00 2.90
475 480 7.468141 TTCACTCACTTAGAATTAGAGCAGA 57.532 36.000 0.00 0.00 0.00 4.26
476 481 7.978414 TGATTCACTCACTTAGAATTAGAGCAG 59.022 37.037 0.00 0.00 32.51 4.24
477 482 7.840931 TGATTCACTCACTTAGAATTAGAGCA 58.159 34.615 0.00 0.00 32.51 4.26
478 483 8.709386 TTGATTCACTCACTTAGAATTAGAGC 57.291 34.615 0.00 0.00 32.51 4.09
479 484 8.816144 GCTTGATTCACTCACTTAGAATTAGAG 58.184 37.037 0.00 0.00 32.51 2.43
480 485 8.314021 TGCTTGATTCACTCACTTAGAATTAGA 58.686 33.333 0.00 0.00 32.51 2.10
481 486 8.484641 TGCTTGATTCACTCACTTAGAATTAG 57.515 34.615 0.00 0.00 32.51 1.73
483 488 7.934855 ATGCTTGATTCACTCACTTAGAATT 57.065 32.000 0.00 0.00 32.51 2.17
484 489 9.453572 TTTATGCTTGATTCACTCACTTAGAAT 57.546 29.630 0.00 0.00 34.88 2.40
485 490 8.846943 TTTATGCTTGATTCACTCACTTAGAA 57.153 30.769 0.00 0.00 32.17 2.10
486 491 8.846943 TTTTATGCTTGATTCACTCACTTAGA 57.153 30.769 0.00 0.00 32.17 2.10
487 492 9.552114 CTTTTTATGCTTGATTCACTCACTTAG 57.448 33.333 0.00 0.00 32.17 2.18
488 493 9.283768 TCTTTTTATGCTTGATTCACTCACTTA 57.716 29.630 0.00 0.00 32.17 2.24
489 494 8.169977 TCTTTTTATGCTTGATTCACTCACTT 57.830 30.769 0.00 0.00 32.17 3.16
490 495 7.750229 TCTTTTTATGCTTGATTCACTCACT 57.250 32.000 0.00 0.00 32.17 3.41
491 496 8.801715 TTTCTTTTTATGCTTGATTCACTCAC 57.198 30.769 0.00 0.00 32.17 3.51
492 497 9.814899 TTTTTCTTTTTATGCTTGATTCACTCA 57.185 25.926 0.00 0.00 0.00 3.41
551 556 8.781196 GCACATCTAAGTCATATGTCATTGATT 58.219 33.333 1.90 0.00 31.60 2.57
552 557 7.935210 TGCACATCTAAGTCATATGTCATTGAT 59.065 33.333 1.90 0.00 31.60 2.57
553 558 7.274447 TGCACATCTAAGTCATATGTCATTGA 58.726 34.615 1.90 0.00 31.60 2.57
554 559 7.486802 TGCACATCTAAGTCATATGTCATTG 57.513 36.000 1.90 0.00 31.60 2.82
555 560 8.687292 ATTGCACATCTAAGTCATATGTCATT 57.313 30.769 1.90 0.00 31.60 2.57
556 561 9.212641 GTATTGCACATCTAAGTCATATGTCAT 57.787 33.333 1.90 0.00 31.60 3.06
557 562 8.424133 AGTATTGCACATCTAAGTCATATGTCA 58.576 33.333 1.90 0.00 31.60 3.58
558 563 8.824159 AGTATTGCACATCTAAGTCATATGTC 57.176 34.615 1.90 0.00 31.60 3.06
562 567 9.710900 CCATAAGTATTGCACATCTAAGTCATA 57.289 33.333 0.00 0.00 0.00 2.15
563 568 7.173907 GCCATAAGTATTGCACATCTAAGTCAT 59.826 37.037 0.00 0.00 0.00 3.06
564 569 6.483307 GCCATAAGTATTGCACATCTAAGTCA 59.517 38.462 0.00 0.00 0.00 3.41
565 570 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
566 571 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
567 572 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
575 580 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
576 581 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
621 626 4.236935 CATGCTGGCGACATTTAGTTTTT 58.763 39.130 0.00 0.00 41.51 1.94
622 627 3.255642 ACATGCTGGCGACATTTAGTTTT 59.744 39.130 0.00 0.00 41.51 2.43
623 628 2.819608 ACATGCTGGCGACATTTAGTTT 59.180 40.909 0.00 0.00 41.51 2.66
624 629 2.420022 GACATGCTGGCGACATTTAGTT 59.580 45.455 0.00 0.00 41.51 2.24
625 630 2.009774 GACATGCTGGCGACATTTAGT 58.990 47.619 0.00 0.00 41.51 2.24
626 631 2.009051 TGACATGCTGGCGACATTTAG 58.991 47.619 0.00 0.00 41.51 1.85
627 632 2.106477 TGACATGCTGGCGACATTTA 57.894 45.000 0.00 0.00 41.51 1.40
628 633 1.068333 GTTGACATGCTGGCGACATTT 60.068 47.619 0.00 0.00 39.64 2.32
629 634 0.523072 GTTGACATGCTGGCGACATT 59.477 50.000 0.00 0.00 39.64 2.71
630 635 1.308069 GGTTGACATGCTGGCGACAT 61.308 55.000 0.00 0.00 41.71 3.06
631 636 1.965930 GGTTGACATGCTGGCGACA 60.966 57.895 10.43 0.00 41.71 4.35
632 637 1.639298 GAGGTTGACATGCTGGCGAC 61.639 60.000 0.00 1.80 39.12 5.19
689 694 7.711846 AGAAGGAGCTTTTCTTTCTTTCTTTC 58.288 34.615 8.22 0.00 46.63 2.62
705 710 2.960688 GCGGGTGGAAGAAGGAGCT 61.961 63.158 0.00 0.00 0.00 4.09
706 711 2.436824 GCGGGTGGAAGAAGGAGC 60.437 66.667 0.00 0.00 0.00 4.70
707 712 1.915078 ATGGCGGGTGGAAGAAGGAG 61.915 60.000 0.00 0.00 0.00 3.69
708 713 0.619255 TATGGCGGGTGGAAGAAGGA 60.619 55.000 0.00 0.00 0.00 3.36
709 714 0.254747 TTATGGCGGGTGGAAGAAGG 59.745 55.000 0.00 0.00 0.00 3.46
710 715 1.065418 AGTTATGGCGGGTGGAAGAAG 60.065 52.381 0.00 0.00 0.00 2.85
711 716 0.988832 AGTTATGGCGGGTGGAAGAA 59.011 50.000 0.00 0.00 0.00 2.52
712 717 0.539986 GAGTTATGGCGGGTGGAAGA 59.460 55.000 0.00 0.00 0.00 2.87
713 718 0.463833 GGAGTTATGGCGGGTGGAAG 60.464 60.000 0.00 0.00 0.00 3.46
714 719 1.202099 TGGAGTTATGGCGGGTGGAA 61.202 55.000 0.00 0.00 0.00 3.53
715 720 1.613928 TGGAGTTATGGCGGGTGGA 60.614 57.895 0.00 0.00 0.00 4.02
716 721 1.451387 GTGGAGTTATGGCGGGTGG 60.451 63.158 0.00 0.00 0.00 4.61
717 722 0.744414 CAGTGGAGTTATGGCGGGTG 60.744 60.000 0.00 0.00 0.00 4.61
718 723 1.602237 CAGTGGAGTTATGGCGGGT 59.398 57.895 0.00 0.00 0.00 5.28
719 724 1.819632 GCAGTGGAGTTATGGCGGG 60.820 63.158 0.00 0.00 0.00 6.13
756 761 1.398390 CGGTTGAATTGCTAGGCTGTC 59.602 52.381 0.00 0.00 0.00 3.51
800 819 1.005037 AGAGCGGACGTTTGCATCA 60.005 52.632 14.27 0.00 0.00 3.07
810 829 2.043852 TGGAGAGGGAGAGCGGAC 60.044 66.667 0.00 0.00 0.00 4.79
814 833 1.145738 AGAGATCTGGAGAGGGAGAGC 59.854 57.143 0.00 0.00 0.00 4.09
815 834 3.225104 CAAGAGATCTGGAGAGGGAGAG 58.775 54.545 0.00 0.00 0.00 3.20
862 885 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
873 896 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
874 897 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
875 898 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
876 899 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
877 900 4.646945 GTGAGAGAGAGAGAGAGAGAGAGA 59.353 50.000 0.00 0.00 0.00 3.10
878 901 4.498850 CGTGAGAGAGAGAGAGAGAGAGAG 60.499 54.167 0.00 0.00 0.00 3.20
879 902 3.381590 CGTGAGAGAGAGAGAGAGAGAGA 59.618 52.174 0.00 0.00 0.00 3.10
880 903 3.381590 TCGTGAGAGAGAGAGAGAGAGAG 59.618 52.174 0.00 0.00 34.84 3.20
881 904 3.361786 TCGTGAGAGAGAGAGAGAGAGA 58.638 50.000 0.00 0.00 34.84 3.10
882 905 3.801114 TCGTGAGAGAGAGAGAGAGAG 57.199 52.381 0.00 0.00 34.84 3.20
895 918 2.028385 GGGTTCTTAAAGGCTCGTGAGA 60.028 50.000 0.00 0.00 39.12 3.27
896 919 2.028020 AGGGTTCTTAAAGGCTCGTGAG 60.028 50.000 0.00 0.00 0.00 3.51
897 920 1.975680 AGGGTTCTTAAAGGCTCGTGA 59.024 47.619 0.00 0.00 0.00 4.35
898 921 2.474410 AGGGTTCTTAAAGGCTCGTG 57.526 50.000 0.00 0.00 0.00 4.35
904 927 6.987404 GCTAAGATCTGTAGGGTTCTTAAAGG 59.013 42.308 0.00 0.00 32.07 3.11
992 1015 0.390860 GAGGATAGACATGCGGTGCT 59.609 55.000 0.00 0.00 0.00 4.40
1267 1290 0.676184 GATACGATGCTCAGCCCTGA 59.324 55.000 0.00 0.00 38.06 3.86
1269 1292 1.109920 ACGATACGATGCTCAGCCCT 61.110 55.000 0.00 0.00 0.00 5.19
1271 1294 0.249073 ACACGATACGATGCTCAGCC 60.249 55.000 0.00 0.00 0.00 4.85
1413 1443 3.045601 TCTTTGAAGAAGAGGGCGAAG 57.954 47.619 0.00 0.00 30.73 3.79
1439 1470 4.905456 TCTAGATCAATAATGGAACCCCGT 59.095 41.667 0.00 0.00 34.29 5.28
1447 1478 8.175925 TCTCTGACAGTCTAGATCAATAATGG 57.824 38.462 1.59 0.00 0.00 3.16
1488 1519 0.167470 TTAACGGTCTGAGACGCGAG 59.833 55.000 23.42 11.05 33.16 5.03
1529 1565 8.717821 CGAGGAAACAAACTGAAGAATATACAA 58.282 33.333 0.00 0.00 0.00 2.41
1591 1627 2.609350 TCGAAACGAAACTAATCGGGG 58.391 47.619 1.59 0.00 46.82 5.73
1596 1632 8.833231 ATATCCATCATCGAAACGAAACTAAT 57.167 30.769 0.00 0.00 39.99 1.73
1669 4873 2.228841 ATCTCCCCTTGCGGCCAAAT 62.229 55.000 2.24 0.00 0.00 2.32
1694 4898 1.237285 CCCAGGGCAACTCTTTCGTG 61.237 60.000 0.00 0.00 0.00 4.35
1696 4900 1.073199 ACCCAGGGCAACTCTTTCG 59.927 57.895 4.91 0.00 0.00 3.46
1740 4944 0.404040 TGAAGCTCATTTTCCCCGGT 59.596 50.000 0.00 0.00 0.00 5.28
1859 5071 3.373846 TACCAGGGGAGGGGAGGG 61.374 72.222 0.00 0.00 0.00 4.30
1861 5073 1.075151 GAGTACCAGGGGAGGGGAG 60.075 68.421 0.00 0.00 0.00 4.30
1862 5074 1.549322 AGAGTACCAGGGGAGGGGA 60.549 63.158 0.00 0.00 0.00 4.81
1863 5075 1.075151 GAGAGTACCAGGGGAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
1864 5076 1.075151 GGAGAGTACCAGGGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
1865 5077 0.105913 GAGGAGAGTACCAGGGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
1866 5078 0.105913 GGAGGAGAGTACCAGGGGAG 60.106 65.000 0.00 0.00 0.00 4.30
1867 5079 0.555369 AGGAGGAGAGTACCAGGGGA 60.555 60.000 0.00 0.00 0.00 4.81
1868 5080 0.105913 GAGGAGGAGAGTACCAGGGG 60.106 65.000 0.00 0.00 0.00 4.79
1869 5081 0.930726 AGAGGAGGAGAGTACCAGGG 59.069 60.000 0.00 0.00 0.00 4.45
1870 5082 2.383855 CAAGAGGAGGAGAGTACCAGG 58.616 57.143 0.00 0.00 0.00 4.45
1871 5083 1.754226 GCAAGAGGAGGAGAGTACCAG 59.246 57.143 0.00 0.00 0.00 4.00
1872 5084 1.619977 GGCAAGAGGAGGAGAGTACCA 60.620 57.143 0.00 0.00 0.00 3.25
1913 5125 4.364409 GTCGCACACGTTTCGCCC 62.364 66.667 0.00 0.00 41.18 6.13
1953 5165 2.173519 CAACCTCCAACATGGCAGAAT 58.826 47.619 0.00 0.00 37.47 2.40
1961 5173 3.055719 CGCCGCAACCTCCAACAT 61.056 61.111 0.00 0.00 0.00 2.71
2029 5241 4.070265 ACGGATCCGGTCTCCCCA 62.070 66.667 35.87 0.00 44.69 4.96
2038 5250 2.278206 CGACAGCTGACGGATCCG 60.278 66.667 32.20 32.20 46.03 4.18
2080 5292 0.475632 AAGTCACATCCACCCCCTCA 60.476 55.000 0.00 0.00 0.00 3.86
2081 5293 0.035056 CAAGTCACATCCACCCCCTC 60.035 60.000 0.00 0.00 0.00 4.30
2082 5294 0.475632 TCAAGTCACATCCACCCCCT 60.476 55.000 0.00 0.00 0.00 4.79
2083 5295 0.404040 TTCAAGTCACATCCACCCCC 59.596 55.000 0.00 0.00 0.00 5.40
2084 5296 1.614317 CCTTCAAGTCACATCCACCCC 60.614 57.143 0.00 0.00 0.00 4.95
2085 5297 1.614317 CCCTTCAAGTCACATCCACCC 60.614 57.143 0.00 0.00 0.00 4.61
2086 5298 1.073923 ACCCTTCAAGTCACATCCACC 59.926 52.381 0.00 0.00 0.00 4.61
2087 5299 2.154462 CACCCTTCAAGTCACATCCAC 58.846 52.381 0.00 0.00 0.00 4.02
2088 5300 1.774254 ACACCCTTCAAGTCACATCCA 59.226 47.619 0.00 0.00 0.00 3.41
2089 5301 2.568623 ACACCCTTCAAGTCACATCC 57.431 50.000 0.00 0.00 0.00 3.51
2090 5302 4.213482 GTGTTACACCCTTCAAGTCACATC 59.787 45.833 3.79 0.00 0.00 3.06
2091 5303 4.134563 GTGTTACACCCTTCAAGTCACAT 58.865 43.478 3.79 0.00 0.00 3.21
2092 5304 3.537580 GTGTTACACCCTTCAAGTCACA 58.462 45.455 3.79 0.00 0.00 3.58
2105 5317 0.939419 GTGTGTTCGGGGTGTTACAC 59.061 55.000 6.99 6.99 40.87 2.90
2157 5829 2.208872 AGTATTGATCTGGGGCCAGTT 58.791 47.619 4.39 0.00 43.96 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.