Multiple sequence alignment - TraesCS2A01G055200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G055200 chr2A 100.000 5258 0 0 1 5258 23802035 23807292 0.000000e+00 9710
1 TraesCS2A01G055200 chr2A 84.829 2228 258 32 2378 4595 23831667 23833824 0.000000e+00 2169
2 TraesCS2A01G055200 chr2A 79.420 1414 246 36 2920 4323 24133424 24134802 0.000000e+00 957
3 TraesCS2A01G055200 chr2A 81.130 885 123 16 1057 1913 24128511 24129379 0.000000e+00 669
4 TraesCS2A01G055200 chr2D 92.698 2205 139 13 2510 4708 21608732 21610920 0.000000e+00 3160
5 TraesCS2A01G055200 chr2D 93.042 1121 53 10 951 2071 21607644 21608739 0.000000e+00 1615
6 TraesCS2A01G055200 chr2D 78.250 1623 291 46 2724 4323 22424477 22426060 0.000000e+00 985
7 TraesCS2A01G055200 chr2D 94.203 552 26 5 4708 5256 469572212 469571664 0.000000e+00 837
8 TraesCS2A01G055200 chr2D 80.979 878 110 22 1069 1913 22419675 22420528 1.230000e-180 643
9 TraesCS2A01G055200 chr2B 92.523 2220 144 14 2494 4707 35028908 35026705 0.000000e+00 3160
10 TraesCS2A01G055200 chr2B 89.484 1512 84 23 663 2115 35030852 35029357 0.000000e+00 1842
11 TraesCS2A01G055200 chr2B 77.969 1625 291 55 2722 4323 39238257 39239837 0.000000e+00 955
12 TraesCS2A01G055200 chr2B 83.732 879 110 22 3832 4706 34886376 34885527 0.000000e+00 800
13 TraesCS2A01G055200 chr2B 86.842 266 25 5 180 443 35031765 35031508 6.660000e-74 289
14 TraesCS2A01G055200 chr2B 83.624 287 20 10 2187 2467 35029167 35028902 1.460000e-60 244
15 TraesCS2A01G055200 chr2B 84.659 176 13 5 473 645 35031511 35031347 4.210000e-36 163
16 TraesCS2A01G055200 chr7A 94.585 554 23 5 4708 5258 148947754 148948303 0.000000e+00 850
17 TraesCS2A01G055200 chr7A 94.192 551 27 5 4707 5256 664964995 664965541 0.000000e+00 835
18 TraesCS2A01G055200 chr7A 93.852 553 29 5 4707 5256 213756591 213756041 0.000000e+00 828
19 TraesCS2A01G055200 chr6A 94.255 557 25 4 4708 5258 506179947 506180502 0.000000e+00 845
20 TraesCS2A01G055200 chr6A 93.490 553 31 4 4707 5256 146623459 146624009 0.000000e+00 817
21 TraesCS2A01G055200 chr3A 94.384 552 26 4 4707 5258 584025380 584025926 0.000000e+00 843
22 TraesCS2A01G055200 chr1A 94.000 550 28 4 4710 5256 355620931 355621478 0.000000e+00 828
23 TraesCS2A01G055200 chr5A 93.502 554 31 3 4707 5257 617380334 617380885 0.000000e+00 819
24 TraesCS2A01G055200 chrUn 75.761 821 154 32 2727 3532 360307688 360306898 6.430000e-99 372


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G055200 chr2A 23802035 23807292 5257 False 9710.0 9710 100.0000 1 5258 1 chr2A.!!$F1 5257
1 TraesCS2A01G055200 chr2A 23831667 23833824 2157 False 2169.0 2169 84.8290 2378 4595 1 chr2A.!!$F2 2217
2 TraesCS2A01G055200 chr2A 24133424 24134802 1378 False 957.0 957 79.4200 2920 4323 1 chr2A.!!$F4 1403
3 TraesCS2A01G055200 chr2A 24128511 24129379 868 False 669.0 669 81.1300 1057 1913 1 chr2A.!!$F3 856
4 TraesCS2A01G055200 chr2D 21607644 21610920 3276 False 2387.5 3160 92.8700 951 4708 2 chr2D.!!$F1 3757
5 TraesCS2A01G055200 chr2D 469571664 469572212 548 True 837.0 837 94.2030 4708 5256 1 chr2D.!!$R1 548
6 TraesCS2A01G055200 chr2D 22419675 22426060 6385 False 814.0 985 79.6145 1069 4323 2 chr2D.!!$F2 3254
7 TraesCS2A01G055200 chr2B 35026705 35031765 5060 True 1139.6 3160 87.4264 180 4707 5 chr2B.!!$R2 4527
8 TraesCS2A01G055200 chr2B 39238257 39239837 1580 False 955.0 955 77.9690 2722 4323 1 chr2B.!!$F1 1601
9 TraesCS2A01G055200 chr2B 34885527 34886376 849 True 800.0 800 83.7320 3832 4706 1 chr2B.!!$R1 874
10 TraesCS2A01G055200 chr7A 148947754 148948303 549 False 850.0 850 94.5850 4708 5258 1 chr7A.!!$F1 550
11 TraesCS2A01G055200 chr7A 664964995 664965541 546 False 835.0 835 94.1920 4707 5256 1 chr7A.!!$F2 549
12 TraesCS2A01G055200 chr7A 213756041 213756591 550 True 828.0 828 93.8520 4707 5256 1 chr7A.!!$R1 549
13 TraesCS2A01G055200 chr6A 506179947 506180502 555 False 845.0 845 94.2550 4708 5258 1 chr6A.!!$F2 550
14 TraesCS2A01G055200 chr6A 146623459 146624009 550 False 817.0 817 93.4900 4707 5256 1 chr6A.!!$F1 549
15 TraesCS2A01G055200 chr3A 584025380 584025926 546 False 843.0 843 94.3840 4707 5258 1 chr3A.!!$F1 551
16 TraesCS2A01G055200 chr1A 355620931 355621478 547 False 828.0 828 94.0000 4710 5256 1 chr1A.!!$F1 546
17 TraesCS2A01G055200 chr5A 617380334 617380885 551 False 819.0 819 93.5020 4707 5257 1 chr5A.!!$F1 550
18 TraesCS2A01G055200 chrUn 360306898 360307688 790 True 372.0 372 75.7610 2727 3532 1 chrUn.!!$R1 805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 364 0.039798 ACTGCTGTCGCTGCATTTTG 60.040 50.0 10.66 4.01 37.65 2.44 F
1828 2396 0.108329 CGCCGGTCTTGTACAGGATT 60.108 55.0 11.21 0.00 45.56 3.01 F
2130 5775 0.260230 TAGAGCTGAGAGTGGGAGGG 59.740 60.0 0.00 0.00 0.00 4.30 F
3932 7919 0.179048 AATCTCATCGCCGCCATCAA 60.179 50.0 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2127 5772 0.039618 ACGGATTTCAACATGGCCCT 59.960 50.0 0.0 0.0 0.0 5.19 R
3393 7378 0.674895 GCTGGCACAAGGTCTCGATT 60.675 55.0 0.0 0.0 38.7 3.34 R
4032 8019 0.037303 CCTCAACACACATCAGCCCT 59.963 55.0 0.0 0.0 0.0 5.19 R
4881 8874 1.069378 CGGAGGTGTCGTACTTTCGC 61.069 60.0 0.0 0.0 0.0 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.047125 CTCCCCACCGGCACCATT 62.047 66.667 0.00 0.00 0.00 3.16
18 19 3.583882 CTCCCCACCGGCACCATTT 62.584 63.158 0.00 0.00 0.00 2.32
19 20 2.204865 CTCCCCACCGGCACCATTTA 62.205 60.000 0.00 0.00 0.00 1.40
20 21 1.304547 CCCCACCGGCACCATTTAA 60.305 57.895 0.00 0.00 0.00 1.52
21 22 0.686112 CCCCACCGGCACCATTTAAT 60.686 55.000 0.00 0.00 0.00 1.40
22 23 0.744281 CCCACCGGCACCATTTAATC 59.256 55.000 0.00 0.00 0.00 1.75
23 24 0.744281 CCACCGGCACCATTTAATCC 59.256 55.000 0.00 0.00 0.00 3.01
24 25 0.380378 CACCGGCACCATTTAATCCG 59.620 55.000 0.00 0.00 39.79 4.18
25 26 1.358759 CCGGCACCATTTAATCCGC 59.641 57.895 0.00 0.00 38.85 5.54
26 27 1.380403 CCGGCACCATTTAATCCGCA 61.380 55.000 0.00 0.00 38.85 5.69
27 28 0.248458 CGGCACCATTTAATCCGCAC 60.248 55.000 0.00 0.00 33.36 5.34
28 29 0.248458 GGCACCATTTAATCCGCACG 60.248 55.000 0.00 0.00 0.00 5.34
29 30 0.248458 GCACCATTTAATCCGCACGG 60.248 55.000 1.73 1.73 0.00 4.94
30 31 1.091537 CACCATTTAATCCGCACGGT 58.908 50.000 9.23 0.00 36.47 4.83
31 32 1.091537 ACCATTTAATCCGCACGGTG 58.908 50.000 9.23 3.15 36.47 4.94
32 33 0.380378 CCATTTAATCCGCACGGTGG 59.620 55.000 10.60 4.39 36.47 4.61
33 34 1.091537 CATTTAATCCGCACGGTGGT 58.908 50.000 10.60 0.00 34.40 4.16
34 35 1.063469 CATTTAATCCGCACGGTGGTC 59.937 52.381 10.60 0.00 34.40 4.02
35 36 1.015085 TTTAATCCGCACGGTGGTCG 61.015 55.000 10.60 5.74 45.88 4.79
36 37 2.839043 TTAATCCGCACGGTGGTCGG 62.839 60.000 17.64 17.64 44.45 4.79
47 48 4.408821 TGGTCGGGCCAGCACATC 62.409 66.667 4.39 0.00 43.61 3.06
48 49 4.408821 GGTCGGGCCAGCACATCA 62.409 66.667 4.39 0.00 37.17 3.07
49 50 2.821366 GTCGGGCCAGCACATCAG 60.821 66.667 4.39 0.00 0.00 2.90
50 51 4.783621 TCGGGCCAGCACATCAGC 62.784 66.667 4.39 0.00 0.00 4.26
52 53 2.441532 GGGCCAGCACATCAGCAT 60.442 61.111 4.39 0.00 36.85 3.79
53 54 2.487532 GGGCCAGCACATCAGCATC 61.488 63.158 4.39 0.00 36.85 3.91
54 55 2.487532 GGCCAGCACATCAGCATCC 61.488 63.158 0.00 0.00 36.85 3.51
55 56 2.487532 GCCAGCACATCAGCATCCC 61.488 63.158 0.00 0.00 36.85 3.85
56 57 1.077285 CCAGCACATCAGCATCCCA 60.077 57.895 0.00 0.00 36.85 4.37
57 58 1.101635 CCAGCACATCAGCATCCCAG 61.102 60.000 0.00 0.00 36.85 4.45
58 59 1.453379 AGCACATCAGCATCCCAGC 60.453 57.895 0.00 0.00 36.85 4.85
59 60 2.487532 GCACATCAGCATCCCAGCC 61.488 63.158 0.00 0.00 34.23 4.85
60 61 2.184830 CACATCAGCATCCCAGCCG 61.185 63.158 0.00 0.00 34.23 5.52
61 62 3.285215 CATCAGCATCCCAGCCGC 61.285 66.667 0.00 0.00 34.23 6.53
62 63 4.575973 ATCAGCATCCCAGCCGCC 62.576 66.667 0.00 0.00 34.23 6.13
77 78 4.748144 GCCCTCCAACCCAGCCAG 62.748 72.222 0.00 0.00 0.00 4.85
78 79 4.748144 CCCTCCAACCCAGCCAGC 62.748 72.222 0.00 0.00 0.00 4.85
79 80 4.748144 CCTCCAACCCAGCCAGCC 62.748 72.222 0.00 0.00 0.00 4.85
80 81 4.748144 CTCCAACCCAGCCAGCCC 62.748 72.222 0.00 0.00 0.00 5.19
82 83 4.748144 CCAACCCAGCCAGCCCTC 62.748 72.222 0.00 0.00 0.00 4.30
83 84 3.655211 CAACCCAGCCAGCCCTCT 61.655 66.667 0.00 0.00 0.00 3.69
84 85 2.860971 AACCCAGCCAGCCCTCTT 60.861 61.111 0.00 0.00 0.00 2.85
85 86 2.911926 AACCCAGCCAGCCCTCTTC 61.912 63.158 0.00 0.00 0.00 2.87
86 87 3.013932 CCCAGCCAGCCCTCTTCT 61.014 66.667 0.00 0.00 0.00 2.85
87 88 2.588989 CCAGCCAGCCCTCTTCTC 59.411 66.667 0.00 0.00 0.00 2.87
88 89 2.186384 CAGCCAGCCCTCTTCTCG 59.814 66.667 0.00 0.00 0.00 4.04
89 90 3.780173 AGCCAGCCCTCTTCTCGC 61.780 66.667 0.00 0.00 0.00 5.03
90 91 4.847444 GCCAGCCCTCTTCTCGCC 62.847 72.222 0.00 0.00 0.00 5.54
91 92 4.521062 CCAGCCCTCTTCTCGCCG 62.521 72.222 0.00 0.00 0.00 6.46
95 96 4.856607 CCCTCTTCTCGCCGCGTC 62.857 72.222 13.39 0.00 0.00 5.19
96 97 4.856607 CCTCTTCTCGCCGCGTCC 62.857 72.222 13.39 0.00 0.00 4.79
97 98 4.116328 CTCTTCTCGCCGCGTCCA 62.116 66.667 13.39 0.00 0.00 4.02
98 99 4.415332 TCTTCTCGCCGCGTCCAC 62.415 66.667 13.39 0.00 0.00 4.02
99 100 4.717629 CTTCTCGCCGCGTCCACA 62.718 66.667 13.39 0.00 0.00 4.17
100 101 3.989698 CTTCTCGCCGCGTCCACAT 62.990 63.158 13.39 0.00 0.00 3.21
101 102 3.583276 TTCTCGCCGCGTCCACATT 62.583 57.895 13.39 0.00 0.00 2.71
102 103 3.554692 CTCGCCGCGTCCACATTC 61.555 66.667 13.39 0.00 0.00 2.67
103 104 3.989698 CTCGCCGCGTCCACATTCT 62.990 63.158 13.39 0.00 0.00 2.40
104 105 3.554692 CGCCGCGTCCACATTCTC 61.555 66.667 4.92 0.00 0.00 2.87
105 106 2.125512 GCCGCGTCCACATTCTCT 60.126 61.111 4.92 0.00 0.00 3.10
106 107 2.167861 GCCGCGTCCACATTCTCTC 61.168 63.158 4.92 0.00 0.00 3.20
107 108 1.215382 CCGCGTCCACATTCTCTCA 59.785 57.895 4.92 0.00 0.00 3.27
108 109 1.078759 CCGCGTCCACATTCTCTCAC 61.079 60.000 4.92 0.00 0.00 3.51
109 110 0.109086 CGCGTCCACATTCTCTCACT 60.109 55.000 0.00 0.00 0.00 3.41
110 111 1.354040 GCGTCCACATTCTCTCACTG 58.646 55.000 0.00 0.00 0.00 3.66
111 112 1.337260 GCGTCCACATTCTCTCACTGT 60.337 52.381 0.00 0.00 0.00 3.55
112 113 2.600731 CGTCCACATTCTCTCACTGTC 58.399 52.381 0.00 0.00 0.00 3.51
113 114 2.672478 CGTCCACATTCTCTCACTGTCC 60.672 54.545 0.00 0.00 0.00 4.02
114 115 1.902508 TCCACATTCTCTCACTGTCCC 59.097 52.381 0.00 0.00 0.00 4.46
115 116 1.065854 CCACATTCTCTCACTGTCCCC 60.066 57.143 0.00 0.00 0.00 4.81
116 117 1.905215 CACATTCTCTCACTGTCCCCT 59.095 52.381 0.00 0.00 0.00 4.79
117 118 2.093764 CACATTCTCTCACTGTCCCCTC 60.094 54.545 0.00 0.00 0.00 4.30
118 119 2.182827 CATTCTCTCACTGTCCCCTCA 58.817 52.381 0.00 0.00 0.00 3.86
119 120 2.630889 TTCTCTCACTGTCCCCTCAT 57.369 50.000 0.00 0.00 0.00 2.90
120 121 2.151502 TCTCTCACTGTCCCCTCATC 57.848 55.000 0.00 0.00 0.00 2.92
121 122 0.743688 CTCTCACTGTCCCCTCATCG 59.256 60.000 0.00 0.00 0.00 3.84
122 123 1.142748 CTCACTGTCCCCTCATCGC 59.857 63.158 0.00 0.00 0.00 4.58
123 124 2.202797 CACTGTCCCCTCATCGCG 60.203 66.667 0.00 0.00 0.00 5.87
124 125 2.680352 ACTGTCCCCTCATCGCGT 60.680 61.111 5.77 0.00 0.00 6.01
125 126 2.105128 CTGTCCCCTCATCGCGTC 59.895 66.667 5.77 0.00 0.00 5.19
126 127 3.432051 CTGTCCCCTCATCGCGTCC 62.432 68.421 5.77 0.00 0.00 4.79
127 128 3.458163 GTCCCCTCATCGCGTCCA 61.458 66.667 5.77 0.00 0.00 4.02
128 129 3.458163 TCCCCTCATCGCGTCCAC 61.458 66.667 5.77 0.00 0.00 4.02
129 130 3.770040 CCCCTCATCGCGTCCACA 61.770 66.667 5.77 0.00 0.00 4.17
130 131 2.264480 CCCTCATCGCGTCCACAA 59.736 61.111 5.77 0.00 0.00 3.33
131 132 1.811266 CCCTCATCGCGTCCACAAG 60.811 63.158 5.77 0.00 0.00 3.16
132 133 1.079819 CCTCATCGCGTCCACAAGT 60.080 57.895 5.77 0.00 0.00 3.16
133 134 0.670546 CCTCATCGCGTCCACAAGTT 60.671 55.000 5.77 0.00 0.00 2.66
134 135 0.439985 CTCATCGCGTCCACAAGTTG 59.560 55.000 5.77 0.00 0.00 3.16
135 136 0.249699 TCATCGCGTCCACAAGTTGT 60.250 50.000 5.77 1.64 0.00 3.32
146 147 1.663695 ACAAGTTGTGAGTTCCACCG 58.336 50.000 7.96 0.00 45.09 4.94
147 148 0.944386 CAAGTTGTGAGTTCCACCGG 59.056 55.000 0.00 0.00 45.09 5.28
148 149 0.818040 AAGTTGTGAGTTCCACCGGC 60.818 55.000 0.00 0.00 45.09 6.13
149 150 1.227853 GTTGTGAGTTCCACCGGCT 60.228 57.895 0.00 0.00 45.09 5.52
150 151 1.227823 TTGTGAGTTCCACCGGCTG 60.228 57.895 0.00 0.00 45.09 4.85
151 152 1.978455 TTGTGAGTTCCACCGGCTGT 61.978 55.000 0.00 0.00 45.09 4.40
152 153 1.227853 GTGAGTTCCACCGGCTGTT 60.228 57.895 0.00 0.00 39.86 3.16
153 154 1.070786 TGAGTTCCACCGGCTGTTC 59.929 57.895 0.00 0.00 0.00 3.18
154 155 1.371558 GAGTTCCACCGGCTGTTCT 59.628 57.895 0.00 0.00 0.00 3.01
155 156 0.670854 GAGTTCCACCGGCTGTTCTC 60.671 60.000 0.00 0.61 0.00 2.87
156 157 1.671379 GTTCCACCGGCTGTTCTCC 60.671 63.158 0.00 0.00 0.00 3.71
157 158 2.144078 TTCCACCGGCTGTTCTCCA 61.144 57.895 0.00 0.00 0.00 3.86
158 159 2.358737 CCACCGGCTGTTCTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
159 160 2.358737 CACCGGCTGTTCTCCACC 60.359 66.667 0.00 0.00 0.00 4.61
160 161 2.847234 ACCGGCTGTTCTCCACCA 60.847 61.111 0.00 0.00 0.00 4.17
161 162 2.358737 CCGGCTGTTCTCCACCAC 60.359 66.667 0.00 0.00 0.00 4.16
162 163 2.743718 CGGCTGTTCTCCACCACT 59.256 61.111 0.00 0.00 0.00 4.00
163 164 1.669115 CGGCTGTTCTCCACCACTG 60.669 63.158 0.00 0.00 0.00 3.66
164 165 1.968540 GGCTGTTCTCCACCACTGC 60.969 63.158 0.00 0.00 37.19 4.40
165 166 2.320587 GCTGTTCTCCACCACTGCG 61.321 63.158 0.00 0.00 0.00 5.18
166 167 2.280797 TGTTCTCCACCACTGCGC 60.281 61.111 0.00 0.00 0.00 6.09
167 168 3.050275 GTTCTCCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
168 169 3.555324 TTCTCCACCACTGCGCCA 61.555 61.111 4.18 0.00 0.00 5.69
169 170 3.535629 TTCTCCACCACTGCGCCAG 62.536 63.158 4.18 4.99 37.52 4.85
197 198 0.250640 CATCCTGGTCTATGCTGGCC 60.251 60.000 0.00 0.00 0.00 5.36
223 224 0.531532 CTCCGGAAGCTAGCACATGG 60.532 60.000 18.83 13.20 0.00 3.66
227 228 1.804372 CGGAAGCTAGCACATGGAGTC 60.804 57.143 18.83 0.80 0.00 3.36
246 247 2.948115 TCCATATGGAAGGGTGCATTG 58.052 47.619 22.52 0.00 42.18 2.82
261 262 4.577834 TGCATTGCACATATGAATGGAG 57.422 40.909 10.38 0.00 37.43 3.86
267 268 7.335171 GCATTGCACATATGAATGGAGTAGATA 59.665 37.037 10.38 0.00 37.43 1.98
271 272 9.797642 TGCACATATGAATGGAGTAGATAAAAT 57.202 29.630 10.38 0.00 37.43 1.82
284 285 9.120538 GGAGTAGATAAAATTTTGCTCCATGTA 57.879 33.333 21.60 8.41 40.51 2.29
293 294 4.406648 TTTGCTCCATGTACAGATCGAT 57.593 40.909 0.00 0.00 0.00 3.59
301 302 4.498177 CCATGTACAGATCGATCGTTGACT 60.498 45.833 21.77 7.54 0.00 3.41
316 317 1.043116 TGACTATGCTAGCCGGCAGT 61.043 55.000 31.54 22.15 45.75 4.40
322 323 0.539518 TGCTAGCCGGCAGTGATTTA 59.460 50.000 31.54 9.35 37.29 1.40
342 343 1.917872 AAAAATCGCCCAGGTAAGCA 58.082 45.000 0.00 0.00 0.00 3.91
360 361 1.012086 CATACTGCTGTCGCTGCATT 58.988 50.000 0.00 8.58 37.65 3.56
363 364 0.039798 ACTGCTGTCGCTGCATTTTG 60.040 50.000 10.66 4.01 37.65 2.44
383 384 2.107031 TGTATGGATCCAGGGAATGCAG 59.893 50.000 21.33 0.00 0.00 4.41
387 388 0.465705 GATCCAGGGAATGCAGACGA 59.534 55.000 0.00 0.00 0.00 4.20
428 430 2.612212 CACCTCGTACAACAACAAAGCT 59.388 45.455 0.00 0.00 0.00 3.74
435 437 4.746115 CGTACAACAACAAAGCTACCTACA 59.254 41.667 0.00 0.00 0.00 2.74
440 442 8.404107 ACAACAACAAAGCTACCTACATTAAT 57.596 30.769 0.00 0.00 0.00 1.40
441 443 9.509956 ACAACAACAAAGCTACCTACATTAATA 57.490 29.630 0.00 0.00 0.00 0.98
442 444 9.769093 CAACAACAAAGCTACCTACATTAATAC 57.231 33.333 0.00 0.00 0.00 1.89
443 445 9.734984 AACAACAAAGCTACCTACATTAATACT 57.265 29.630 0.00 0.00 0.00 2.12
444 446 9.379791 ACAACAAAGCTACCTACATTAATACTC 57.620 33.333 0.00 0.00 0.00 2.59
445 447 9.601217 CAACAAAGCTACCTACATTAATACTCT 57.399 33.333 0.00 0.00 0.00 3.24
447 449 9.601217 ACAAAGCTACCTACATTAATACTCTTG 57.399 33.333 0.00 0.00 0.00 3.02
448 450 9.601217 CAAAGCTACCTACATTAATACTCTTGT 57.399 33.333 0.00 0.00 0.00 3.16
451 453 8.578151 AGCTACCTACATTAATACTCTTGTAGC 58.422 37.037 17.47 17.47 44.66 3.58
452 454 8.358148 GCTACCTACATTAATACTCTTGTAGCA 58.642 37.037 18.90 6.60 44.08 3.49
455 457 8.759782 ACCTACATTAATACTCTTGTAGCAAGT 58.240 33.333 8.48 0.00 39.98 3.16
456 458 9.250624 CCTACATTAATACTCTTGTAGCAAGTC 57.749 37.037 8.48 0.00 39.98 3.01
458 460 8.934507 ACATTAATACTCTTGTAGCAAGTCTC 57.065 34.615 8.48 0.00 31.51 3.36
459 461 8.754080 ACATTAATACTCTTGTAGCAAGTCTCT 58.246 33.333 8.48 0.00 31.51 3.10
460 462 9.029243 CATTAATACTCTTGTAGCAAGTCTCTG 57.971 37.037 8.48 0.24 31.51 3.35
461 463 6.597832 AATACTCTTGTAGCAAGTCTCTGT 57.402 37.500 8.48 4.89 31.51 3.41
462 464 4.250116 ACTCTTGTAGCAAGTCTCTGTG 57.750 45.455 8.48 0.00 0.00 3.66
463 465 3.006323 ACTCTTGTAGCAAGTCTCTGTGG 59.994 47.826 8.48 0.00 0.00 4.17
464 466 2.072298 CTTGTAGCAAGTCTCTGTGGC 58.928 52.381 1.06 0.00 0.00 5.01
465 467 1.047801 TGTAGCAAGTCTCTGTGGCA 58.952 50.000 0.00 0.00 0.00 4.92
466 468 1.001293 TGTAGCAAGTCTCTGTGGCAG 59.999 52.381 0.00 0.00 0.00 4.85
467 469 1.273606 GTAGCAAGTCTCTGTGGCAGA 59.726 52.381 0.00 0.00 38.25 4.26
479 481 4.226384 TCTGTGGCAGAGGATGTACATAT 58.774 43.478 8.71 0.00 35.39 1.78
486 488 7.118390 GTGGCAGAGGATGTACATATAATGAAC 59.882 40.741 8.71 5.12 0.00 3.18
487 489 7.016563 TGGCAGAGGATGTACATATAATGAACT 59.983 37.037 8.71 0.00 0.00 3.01
499 501 8.076714 ACATATAATGAACTTGCACATAGTCG 57.923 34.615 0.00 0.00 0.00 4.18
500 502 7.710907 ACATATAATGAACTTGCACATAGTCGT 59.289 33.333 0.00 0.00 0.00 4.34
501 503 4.928661 AATGAACTTGCACATAGTCGTC 57.071 40.909 0.00 0.00 0.00 4.20
502 504 2.683968 TGAACTTGCACATAGTCGTCC 58.316 47.619 0.00 0.00 0.00 4.79
503 505 2.000447 GAACTTGCACATAGTCGTCCC 59.000 52.381 0.00 0.00 0.00 4.46
504 506 0.973632 ACTTGCACATAGTCGTCCCA 59.026 50.000 0.00 0.00 0.00 4.37
511 513 5.318630 TGCACATAGTCGTCCCATAGTATA 58.681 41.667 0.00 0.00 0.00 1.47
521 523 4.474113 GTCCCATAGTATACGCTTTCTCG 58.526 47.826 0.00 0.00 0.00 4.04
534 536 5.947443 ACGCTTTCTCGTATGTTACTTAGT 58.053 37.500 0.00 0.00 41.36 2.24
535 537 7.076842 ACGCTTTCTCGTATGTTACTTAGTA 57.923 36.000 0.00 0.00 41.36 1.82
536 538 7.185453 ACGCTTTCTCGTATGTTACTTAGTAG 58.815 38.462 0.00 0.00 41.36 2.57
537 539 7.148340 ACGCTTTCTCGTATGTTACTTAGTAGT 60.148 37.037 0.00 0.00 41.36 2.73
538 540 8.331022 CGCTTTCTCGTATGTTACTTAGTAGTA 58.669 37.037 0.00 0.00 35.78 1.82
563 565 2.278661 GTAGTAGTCGCCGGCTGC 60.279 66.667 26.68 16.90 0.00 5.25
571 573 3.799755 CGCCGGCTGCCAAAGTAC 61.800 66.667 26.68 0.00 36.24 2.73
585 587 6.769512 TGCCAAAGTACTAGAACTTTCTCAT 58.230 36.000 0.00 0.00 45.59 2.90
614 616 2.484742 AACCCCAACCGATTGTCTAC 57.515 50.000 0.00 0.00 33.60 2.59
620 622 1.732259 CAACCGATTGTCTACACAGCC 59.268 52.381 0.00 0.00 32.71 4.85
641 643 2.083774 CATGTGGCTTCGGTTACATGT 58.916 47.619 2.69 2.69 43.19 3.21
644 646 3.741249 TGTGGCTTCGGTTACATGTAAA 58.259 40.909 19.63 2.07 0.00 2.01
645 647 4.135306 TGTGGCTTCGGTTACATGTAAAA 58.865 39.130 19.63 9.99 0.00 1.52
680 1158 9.535170 CCAGGGAGTATATCTCTATTTCTAACA 57.465 37.037 0.00 0.00 36.19 2.41
691 1169 5.428253 TCTATTTCTAACACTCCACATGGC 58.572 41.667 0.00 0.00 34.44 4.40
695 1173 0.844661 TAACACTCCACATGGCCCCT 60.845 55.000 0.00 0.00 34.44 4.79
696 1174 1.729267 AACACTCCACATGGCCCCTT 61.729 55.000 0.00 0.00 34.44 3.95
698 1176 1.852157 ACTCCACATGGCCCCTTCA 60.852 57.895 0.00 0.00 34.44 3.02
710 1188 7.233348 CACATGGCCCCTTCAAAATAGTAATAT 59.767 37.037 0.00 0.00 0.00 1.28
749 1227 0.318869 TCGAAGTAGCGCGGAAACAA 60.319 50.000 8.83 0.00 0.00 2.83
757 1235 5.539048 AGTAGCGCGGAAACAAGATATAAT 58.461 37.500 8.83 0.00 0.00 1.28
849 1346 0.469705 TTCAGCAAATGGGTGGCAGT 60.470 50.000 0.00 0.00 45.09 4.40
891 1401 3.967332 TTACAAGGGAAACTAGGACGG 57.033 47.619 0.00 0.00 0.00 4.79
904 1414 2.131776 AGGACGGAAACCACAACAAA 57.868 45.000 0.00 0.00 0.00 2.83
906 1416 3.028130 AGGACGGAAACCACAACAAAAT 58.972 40.909 0.00 0.00 0.00 1.82
909 1419 3.776340 ACGGAAACCACAACAAAATGAC 58.224 40.909 0.00 0.00 0.00 3.06
914 1431 6.183360 CGGAAACCACAACAAAATGACAAAAT 60.183 34.615 0.00 0.00 0.00 1.82
945 1462 4.947388 ACCTGTAGTTTTTCACAAGCTTGA 59.053 37.500 32.50 8.96 0.00 3.02
957 1488 3.979495 CACAAGCTTGAAATGTCTGCTTC 59.021 43.478 32.50 0.00 40.03 3.86
981 1512 8.877864 TCAACCCAATCAATAAATAGTTGTCT 57.122 30.769 0.00 0.00 35.87 3.41
1010 1541 1.168407 TGAGCAAGCAACCTGACAGC 61.168 55.000 0.00 0.00 0.00 4.40
1011 1542 0.888285 GAGCAAGCAACCTGACAGCT 60.888 55.000 0.00 0.00 41.03 4.24
1012 1543 0.397941 AGCAAGCAACCTGACAGCTA 59.602 50.000 0.00 0.00 37.70 3.32
1013 1544 0.519077 GCAAGCAACCTGACAGCTAC 59.481 55.000 0.00 0.00 37.70 3.58
1014 1545 0.792640 CAAGCAACCTGACAGCTACG 59.207 55.000 0.00 0.00 37.70 3.51
1106 1641 2.670148 GCATCCTCCTCCCCACGTT 61.670 63.158 0.00 0.00 0.00 3.99
1112 1647 0.613853 CTCCTCCCCACGTTCTACCA 60.614 60.000 0.00 0.00 0.00 3.25
1113 1648 0.901580 TCCTCCCCACGTTCTACCAC 60.902 60.000 0.00 0.00 0.00 4.16
1114 1649 1.595357 CTCCCCACGTTCTACCACC 59.405 63.158 0.00 0.00 0.00 4.61
1115 1650 0.903454 CTCCCCACGTTCTACCACCT 60.903 60.000 0.00 0.00 0.00 4.00
1116 1651 1.189524 TCCCCACGTTCTACCACCTG 61.190 60.000 0.00 0.00 0.00 4.00
1117 1652 1.189524 CCCCACGTTCTACCACCTGA 61.190 60.000 0.00 0.00 0.00 3.86
1241 1785 0.522626 TTCATCAACGCGTCCTACGA 59.477 50.000 14.44 4.89 46.05 3.43
1397 1944 3.211564 ATGGCGGCAACACAACAGC 62.212 57.895 18.31 0.00 0.00 4.40
1504 2063 1.146041 AGCGACAAGAACAGCACCA 59.854 52.632 0.00 0.00 0.00 4.17
1731 2299 3.891366 CCAAGTCCAAGGTGATGAAAGTT 59.109 43.478 0.00 0.00 0.00 2.66
1735 2303 3.004734 GTCCAAGGTGATGAAAGTTGTGG 59.995 47.826 0.00 0.00 0.00 4.17
1743 2311 3.563808 TGATGAAAGTTGTGGTTCGGAAG 59.436 43.478 0.00 0.00 0.00 3.46
1828 2396 0.108329 CGCCGGTCTTGTACAGGATT 60.108 55.000 11.21 0.00 45.56 3.01
1973 5618 6.093357 ACGTGTACTAGCTAGTTTCCTTCTAC 59.907 42.308 30.40 19.43 37.73 2.59
1995 5640 1.063469 CCATGCGAAAATGTACGACCC 59.937 52.381 0.00 0.00 0.00 4.46
1996 5641 2.006888 CATGCGAAAATGTACGACCCT 58.993 47.619 0.00 0.00 0.00 4.34
2043 5688 0.612453 ACATCATGTGCATGTGCCCA 60.612 50.000 11.38 0.00 41.18 5.36
2122 5767 6.207417 CCTTCCTAAGATCTTAGAGCTGAGAG 59.793 46.154 34.41 21.91 43.90 3.20
2125 5770 5.241506 CCTAAGATCTTAGAGCTGAGAGTGG 59.758 48.000 34.41 16.34 43.90 4.00
2127 5772 3.204158 AGATCTTAGAGCTGAGAGTGGGA 59.796 47.826 0.00 0.00 0.00 4.37
2130 5775 0.260230 TAGAGCTGAGAGTGGGAGGG 59.740 60.000 0.00 0.00 0.00 4.30
2145 5790 0.740737 GAGGGCCATGTTGAAATCCG 59.259 55.000 6.18 0.00 0.00 4.18
2280 6062 1.952367 GCTACTGGCTTGGCTCACAAT 60.952 52.381 0.00 0.00 38.65 2.71
2281 6063 2.440409 CTACTGGCTTGGCTCACAATT 58.560 47.619 0.00 0.00 38.65 2.32
2282 6064 1.708341 ACTGGCTTGGCTCACAATTT 58.292 45.000 0.00 0.00 38.65 1.82
2283 6065 2.041701 ACTGGCTTGGCTCACAATTTT 58.958 42.857 0.00 0.00 38.65 1.82
2298 6080 7.386025 GCTCACAATTTTCTCTTTGGCTTTTAT 59.614 33.333 0.00 0.00 0.00 1.40
2309 6091 4.989279 TTGGCTTTTATCCTCTGAATGC 57.011 40.909 0.00 0.00 0.00 3.56
2347 6129 9.923143 CGATACCTCTATGTTTTGATACCATAA 57.077 33.333 0.00 0.00 0.00 1.90
2351 6133 9.561069 ACCTCTATGTTTTGATACCATAATGAC 57.439 33.333 0.00 0.00 0.00 3.06
2352 6134 9.559732 CCTCTATGTTTTGATACCATAATGACA 57.440 33.333 0.00 0.00 0.00 3.58
2439 6227 5.772169 TCAACATATTCACCCACACATCAAA 59.228 36.000 0.00 0.00 0.00 2.69
2440 6228 6.436847 TCAACATATTCACCCACACATCAAAT 59.563 34.615 0.00 0.00 0.00 2.32
2441 6229 6.855763 ACATATTCACCCACACATCAAATT 57.144 33.333 0.00 0.00 0.00 1.82
2442 6230 7.953005 ACATATTCACCCACACATCAAATTA 57.047 32.000 0.00 0.00 0.00 1.40
2477 6265 8.553459 TTTTGGACAAAATCAAGCTAACAAAA 57.447 26.923 6.14 0.00 35.57 2.44
2478 6266 7.532682 TTGGACAAAATCAAGCTAACAAAAC 57.467 32.000 0.00 0.00 0.00 2.43
2479 6267 6.872920 TGGACAAAATCAAGCTAACAAAACT 58.127 32.000 0.00 0.00 0.00 2.66
2480 6268 8.001881 TGGACAAAATCAAGCTAACAAAACTA 57.998 30.769 0.00 0.00 0.00 2.24
2481 6269 8.637986 TGGACAAAATCAAGCTAACAAAACTAT 58.362 29.630 0.00 0.00 0.00 2.12
2693 6663 4.722361 TCCAGCCGTAACTTTTTGTTTT 57.278 36.364 0.00 0.00 39.89 2.43
2797 6767 2.250031 TGAGCCAAGCCAATGTTTCAT 58.750 42.857 0.00 0.00 0.00 2.57
2896 6869 5.822519 ACAGCTATGTTTCTGTGAAAAGACA 59.177 36.000 0.00 0.00 41.53 3.41
2901 6874 7.148340 GCTATGTTTCTGTGAAAAGACATAGCT 60.148 37.037 27.22 0.00 45.16 3.32
3097 7082 7.692088 TGAAACAATTTTGCAAGGTAAACATG 58.308 30.769 0.00 0.00 0.00 3.21
3155 7140 8.579850 ACTGAAAAATGCCACTTGATCTAATA 57.420 30.769 0.00 0.00 0.00 0.98
3217 7202 3.915437 TCGAAGTTGCAAGGAAATTCC 57.085 42.857 3.29 3.29 36.58 3.01
3225 7210 2.039216 TGCAAGGAAATTCCCGTACTCA 59.961 45.455 8.66 0.00 37.19 3.41
3294 7279 0.625849 AGGGATCCTTTGGCGATGTT 59.374 50.000 12.58 0.00 0.00 2.71
3299 7284 3.442273 GGATCCTTTGGCGATGTTTACAA 59.558 43.478 3.84 0.00 0.00 2.41
3314 7299 1.525941 TACAAAGGGCGGCTAACAAC 58.474 50.000 9.56 0.00 0.00 3.32
3322 7307 4.695560 GGCTAACAACGCCAGACT 57.304 55.556 0.00 0.00 46.77 3.24
3393 7378 3.244078 ACCAGAAGAACTATGTGCACGAA 60.244 43.478 13.13 1.14 0.00 3.85
3453 7438 0.740868 CACTCATCGGTTGGTGCGAT 60.741 55.000 0.00 0.00 0.00 4.58
3570 7557 4.658435 ACATGGCCACAGAGGTACAATATA 59.342 41.667 8.16 0.00 40.61 0.86
3636 7623 1.828660 CGACTCGGCCAGGAGGTAT 60.829 63.158 11.78 0.00 38.39 2.73
3684 7671 2.060383 CGTGATGCTGGGAGAGGGA 61.060 63.158 0.00 0.00 0.00 4.20
3814 7801 1.137086 GGTACATCGAGACTGGCACAT 59.863 52.381 0.00 0.00 38.20 3.21
3915 7902 0.894835 GGGCATCCAACCGAAACAAT 59.105 50.000 0.00 0.00 0.00 2.71
3932 7919 0.179048 AATCTCATCGCCGCCATCAA 60.179 50.000 0.00 0.00 0.00 2.57
3939 7926 2.514824 GCCGCCATCAAGGAGTCC 60.515 66.667 0.00 0.00 41.22 3.85
4047 8034 2.504367 GTAACAGGGCTGATGTGTGTT 58.496 47.619 0.00 0.00 35.56 3.32
4051 8038 0.037303 AGGGCTGATGTGTGTTGAGG 59.963 55.000 0.00 0.00 0.00 3.86
4062 8049 1.344438 TGTGTTGAGGAAGAGCGTGAT 59.656 47.619 0.00 0.00 0.00 3.06
4099 8086 4.152938 TCAAAGATGTCATCAACTTGCTCG 59.847 41.667 15.20 0.00 36.91 5.03
4133 8120 2.743636 TCTCTGACATCCGTTTGGTC 57.256 50.000 0.00 0.00 36.30 4.02
4160 8147 5.639506 TGAAAGATTCTTCAATGAGGACGAC 59.360 40.000 0.00 0.00 32.39 4.34
4184 8171 6.015350 ACGGATCGATTTCATTCCATACTAGT 60.015 38.462 0.00 0.00 0.00 2.57
4185 8172 7.176165 ACGGATCGATTTCATTCCATACTAGTA 59.824 37.037 4.77 4.77 0.00 1.82
4186 8173 7.698550 CGGATCGATTTCATTCCATACTAGTAG 59.301 40.741 8.85 0.00 0.00 2.57
4204 8191 0.695347 AGCTAGCAAGGTTGGCTTCT 59.305 50.000 18.83 0.00 42.62 2.85
4208 8195 1.613836 AGCAAGGTTGGCTTCTCAAG 58.386 50.000 0.00 0.00 38.81 3.02
4230 8217 2.305009 GCAAGGGCATCATCTTTAGCT 58.695 47.619 0.00 0.00 40.72 3.32
4234 8221 5.010415 GCAAGGGCATCATCTTTAGCTTATT 59.990 40.000 0.00 0.00 40.72 1.40
4235 8222 6.444633 CAAGGGCATCATCTTTAGCTTATTG 58.555 40.000 0.00 0.00 0.00 1.90
4236 8223 5.945310 AGGGCATCATCTTTAGCTTATTGA 58.055 37.500 0.00 0.00 0.00 2.57
4241 8228 8.521176 GGCATCATCTTTAGCTTATTGATGAAT 58.479 33.333 20.01 9.82 44.08 2.57
4402 8390 7.739498 TGAATAAAGTTTCAAGACCTACCAC 57.261 36.000 0.00 0.00 32.82 4.16
4444 8432 3.965379 AATTGGTTGCTTGATGATGCA 57.035 38.095 0.00 0.00 37.42 3.96
4455 8443 4.154737 GCTTGATGATGCACACAGTAAAGA 59.845 41.667 0.00 0.00 0.00 2.52
4470 8458 8.567948 ACACAGTAAAGACATTATTTTCACCTG 58.432 33.333 0.00 0.00 0.00 4.00
4565 8554 3.151554 TCACTACGAGCCTTACAGTGAA 58.848 45.455 0.00 0.00 41.84 3.18
4598 8587 2.751259 TGCCATTCTCAAGCAGATTCAC 59.249 45.455 0.00 0.00 31.65 3.18
4617 8606 0.098200 CTTGCTGCATGATGGTGTCG 59.902 55.000 9.72 0.00 0.00 4.35
4620 8609 0.460811 GCTGCATGATGGTGTCGAGA 60.461 55.000 0.00 0.00 0.00 4.04
4624 8613 1.280982 CATGATGGTGTCGAGAACCG 58.719 55.000 11.57 0.00 40.86 4.44
4924 8917 4.077188 GCACACGTTCAGCTCGGC 62.077 66.667 0.00 0.00 0.00 5.54
5024 9017 1.002502 GCTACCGGAACAGGGCTTT 60.003 57.895 9.46 0.00 35.02 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.686112 ATTAAATGGTGCCGGTGGGG 60.686 55.000 1.90 0.00 39.58 4.96
3 4 0.744281 GATTAAATGGTGCCGGTGGG 59.256 55.000 1.90 0.00 0.00 4.61
5 6 0.380378 CGGATTAAATGGTGCCGGTG 59.620 55.000 1.90 0.00 38.40 4.94
7 8 1.358759 GCGGATTAAATGGTGCCGG 59.641 57.895 0.00 0.00 42.09 6.13
9 10 0.248458 CGTGCGGATTAAATGGTGCC 60.248 55.000 0.00 0.00 0.00 5.01
12 13 1.091537 CACCGTGCGGATTAAATGGT 58.908 50.000 18.16 0.00 38.96 3.55
13 14 0.380378 CCACCGTGCGGATTAAATGG 59.620 55.000 18.16 9.27 38.96 3.16
14 15 1.063469 GACCACCGTGCGGATTAAATG 59.937 52.381 18.16 3.76 38.96 2.32
15 16 1.375551 GACCACCGTGCGGATTAAAT 58.624 50.000 18.16 0.00 38.96 1.40
16 17 1.015085 CGACCACCGTGCGGATTAAA 61.015 55.000 18.16 0.00 38.96 1.52
17 18 1.446445 CGACCACCGTGCGGATTAA 60.446 57.895 18.16 0.00 38.96 1.40
18 19 2.182284 CGACCACCGTGCGGATTA 59.818 61.111 18.16 0.00 38.96 1.75
29 30 4.722700 ATGTGCTGGCCCGACCAC 62.723 66.667 0.00 2.56 46.36 4.16
31 32 4.408821 TGATGTGCTGGCCCGACC 62.409 66.667 0.00 0.00 39.84 4.79
32 33 2.821366 CTGATGTGCTGGCCCGAC 60.821 66.667 0.00 0.00 0.00 4.79
33 34 4.783621 GCTGATGTGCTGGCCCGA 62.784 66.667 0.00 0.00 0.00 5.14
35 36 2.441532 ATGCTGATGTGCTGGCCC 60.442 61.111 0.00 0.00 0.00 5.80
36 37 2.487532 GGATGCTGATGTGCTGGCC 61.488 63.158 0.00 0.00 0.00 5.36
37 38 2.487532 GGGATGCTGATGTGCTGGC 61.488 63.158 0.00 0.00 0.00 4.85
38 39 1.077285 TGGGATGCTGATGTGCTGG 60.077 57.895 0.00 0.00 0.00 4.85
39 40 1.725557 GCTGGGATGCTGATGTGCTG 61.726 60.000 0.00 0.00 0.00 4.41
40 41 1.453379 GCTGGGATGCTGATGTGCT 60.453 57.895 0.00 0.00 0.00 4.40
41 42 2.487532 GGCTGGGATGCTGATGTGC 61.488 63.158 0.00 0.00 0.00 4.57
42 43 2.184830 CGGCTGGGATGCTGATGTG 61.185 63.158 0.00 0.00 41.56 3.21
43 44 2.191375 CGGCTGGGATGCTGATGT 59.809 61.111 0.00 0.00 41.56 3.06
44 45 3.285215 GCGGCTGGGATGCTGATG 61.285 66.667 0.00 0.00 41.56 3.07
45 46 4.575973 GGCGGCTGGGATGCTGAT 62.576 66.667 0.00 0.00 41.56 2.90
60 61 4.748144 CTGGCTGGGTTGGAGGGC 62.748 72.222 0.00 0.00 0.00 5.19
61 62 4.748144 GCTGGCTGGGTTGGAGGG 62.748 72.222 0.00 0.00 0.00 4.30
62 63 4.748144 GGCTGGCTGGGTTGGAGG 62.748 72.222 0.00 0.00 0.00 4.30
63 64 4.748144 GGGCTGGCTGGGTTGGAG 62.748 72.222 0.00 0.00 0.00 3.86
65 66 4.748144 GAGGGCTGGCTGGGTTGG 62.748 72.222 0.00 0.00 0.00 3.77
66 67 3.215587 AAGAGGGCTGGCTGGGTTG 62.216 63.158 0.00 0.00 0.00 3.77
67 68 2.860971 AAGAGGGCTGGCTGGGTT 60.861 61.111 0.00 0.00 0.00 4.11
68 69 3.334054 GAAGAGGGCTGGCTGGGT 61.334 66.667 0.00 0.00 0.00 4.51
69 70 3.013932 AGAAGAGGGCTGGCTGGG 61.014 66.667 0.00 0.00 0.00 4.45
70 71 2.588989 GAGAAGAGGGCTGGCTGG 59.411 66.667 0.00 0.00 0.00 4.85
71 72 2.186384 CGAGAAGAGGGCTGGCTG 59.814 66.667 0.00 0.00 0.00 4.85
72 73 3.780173 GCGAGAAGAGGGCTGGCT 61.780 66.667 0.00 0.00 34.74 4.75
73 74 4.847444 GGCGAGAAGAGGGCTGGC 62.847 72.222 0.00 0.00 36.52 4.85
74 75 4.521062 CGGCGAGAAGAGGGCTGG 62.521 72.222 0.00 0.00 0.00 4.85
78 79 4.856607 GACGCGGCGAGAAGAGGG 62.857 72.222 30.94 0.00 0.00 4.30
79 80 4.856607 GGACGCGGCGAGAAGAGG 62.857 72.222 30.94 0.00 0.00 3.69
80 81 4.116328 TGGACGCGGCGAGAAGAG 62.116 66.667 30.94 0.00 0.00 2.85
81 82 4.415332 GTGGACGCGGCGAGAAGA 62.415 66.667 30.94 4.82 0.00 2.87
82 83 3.989698 ATGTGGACGCGGCGAGAAG 62.990 63.158 30.94 3.99 0.00 2.85
83 84 3.583276 AATGTGGACGCGGCGAGAA 62.583 57.895 30.94 10.46 0.00 2.87
84 85 3.982372 GAATGTGGACGCGGCGAGA 62.982 63.158 30.94 2.50 0.00 4.04
85 86 3.554692 GAATGTGGACGCGGCGAG 61.555 66.667 30.94 11.17 0.00 5.03
86 87 3.982372 GAGAATGTGGACGCGGCGA 62.982 63.158 30.94 0.00 0.00 5.54
87 88 3.554692 GAGAATGTGGACGCGGCG 61.555 66.667 22.36 22.36 0.00 6.46
88 89 2.125512 AGAGAATGTGGACGCGGC 60.126 61.111 12.47 7.53 0.00 6.53
89 90 1.078759 GTGAGAGAATGTGGACGCGG 61.079 60.000 12.47 0.00 0.00 6.46
90 91 0.109086 AGTGAGAGAATGTGGACGCG 60.109 55.000 3.53 3.53 0.00 6.01
91 92 1.337260 ACAGTGAGAGAATGTGGACGC 60.337 52.381 0.00 0.00 0.00 5.19
92 93 2.600731 GACAGTGAGAGAATGTGGACG 58.399 52.381 0.00 0.00 0.00 4.79
93 94 2.354203 GGGACAGTGAGAGAATGTGGAC 60.354 54.545 0.00 0.00 0.00 4.02
94 95 1.902508 GGGACAGTGAGAGAATGTGGA 59.097 52.381 0.00 0.00 0.00 4.02
95 96 1.065854 GGGGACAGTGAGAGAATGTGG 60.066 57.143 0.00 0.00 0.00 4.17
96 97 1.905215 AGGGGACAGTGAGAGAATGTG 59.095 52.381 0.00 0.00 0.00 3.21
97 98 2.183679 GAGGGGACAGTGAGAGAATGT 58.816 52.381 0.00 0.00 0.00 2.71
98 99 2.182827 TGAGGGGACAGTGAGAGAATG 58.817 52.381 0.00 0.00 0.00 2.67
99 100 2.630889 TGAGGGGACAGTGAGAGAAT 57.369 50.000 0.00 0.00 0.00 2.40
100 101 2.461695 GATGAGGGGACAGTGAGAGAA 58.538 52.381 0.00 0.00 0.00 2.87
101 102 1.683319 CGATGAGGGGACAGTGAGAGA 60.683 57.143 0.00 0.00 0.00 3.10
102 103 0.743688 CGATGAGGGGACAGTGAGAG 59.256 60.000 0.00 0.00 0.00 3.20
103 104 1.323271 GCGATGAGGGGACAGTGAGA 61.323 60.000 0.00 0.00 0.00 3.27
104 105 1.142748 GCGATGAGGGGACAGTGAG 59.857 63.158 0.00 0.00 0.00 3.51
105 106 2.710902 CGCGATGAGGGGACAGTGA 61.711 63.158 0.00 0.00 0.00 3.41
106 107 2.202797 CGCGATGAGGGGACAGTG 60.203 66.667 0.00 0.00 0.00 3.66
107 108 2.680352 ACGCGATGAGGGGACAGT 60.680 61.111 15.93 0.00 37.07 3.55
108 109 2.105128 GACGCGATGAGGGGACAG 59.895 66.667 15.93 0.00 37.07 3.51
109 110 3.458163 GGACGCGATGAGGGGACA 61.458 66.667 15.93 0.00 37.07 4.02
110 111 3.458163 TGGACGCGATGAGGGGAC 61.458 66.667 15.93 0.00 37.07 4.46
111 112 3.458163 GTGGACGCGATGAGGGGA 61.458 66.667 15.93 0.00 37.07 4.81
112 113 3.309436 TTGTGGACGCGATGAGGGG 62.309 63.158 15.93 0.00 37.07 4.79
113 114 1.811266 CTTGTGGACGCGATGAGGG 60.811 63.158 15.93 0.00 38.93 4.30
114 115 0.670546 AACTTGTGGACGCGATGAGG 60.671 55.000 15.93 0.00 0.00 3.86
115 116 0.439985 CAACTTGTGGACGCGATGAG 59.560 55.000 15.93 4.10 0.00 2.90
116 117 0.249699 ACAACTTGTGGACGCGATGA 60.250 50.000 15.93 0.00 0.00 2.92
117 118 0.110688 CACAACTTGTGGACGCGATG 60.111 55.000 15.93 0.00 44.27 3.84
118 119 2.234613 CACAACTTGTGGACGCGAT 58.765 52.632 15.93 0.00 44.27 4.58
119 120 3.712655 CACAACTTGTGGACGCGA 58.287 55.556 15.93 0.00 44.27 5.87
134 135 1.227853 AACAGCCGGTGGAACTCAC 60.228 57.895 1.90 0.00 45.34 3.51
135 136 1.070786 GAACAGCCGGTGGAACTCA 59.929 57.895 1.90 0.00 36.74 3.41
136 137 0.670854 GAGAACAGCCGGTGGAACTC 60.671 60.000 1.90 3.85 36.74 3.01
137 138 1.371558 GAGAACAGCCGGTGGAACT 59.628 57.895 1.90 0.00 36.74 3.01
138 139 1.671379 GGAGAACAGCCGGTGGAAC 60.671 63.158 1.90 0.00 0.00 3.62
139 140 2.144078 TGGAGAACAGCCGGTGGAA 61.144 57.895 1.90 0.00 0.00 3.53
140 141 2.525629 TGGAGAACAGCCGGTGGA 60.526 61.111 1.90 0.00 0.00 4.02
141 142 2.358737 GTGGAGAACAGCCGGTGG 60.359 66.667 1.90 0.00 0.00 4.61
142 143 2.358737 GGTGGAGAACAGCCGGTG 60.359 66.667 1.90 2.53 41.69 4.94
143 144 2.847234 TGGTGGAGAACAGCCGGT 60.847 61.111 1.90 0.00 46.86 5.28
144 145 2.358737 GTGGTGGAGAACAGCCGG 60.359 66.667 0.00 0.00 46.86 6.13
145 146 1.669115 CAGTGGTGGAGAACAGCCG 60.669 63.158 0.00 0.00 46.86 5.52
146 147 1.968540 GCAGTGGTGGAGAACAGCC 60.969 63.158 0.00 0.00 46.86 4.85
148 149 2.320587 GCGCAGTGGTGGAGAACAG 61.321 63.158 0.30 0.00 0.00 3.16
149 150 2.280797 GCGCAGTGGTGGAGAACA 60.281 61.111 0.30 0.00 0.00 3.18
150 151 3.050275 GGCGCAGTGGTGGAGAAC 61.050 66.667 10.83 0.00 0.00 3.01
151 152 3.535629 CTGGCGCAGTGGTGGAGAA 62.536 63.158 10.83 0.00 0.00 2.87
152 153 4.007644 CTGGCGCAGTGGTGGAGA 62.008 66.667 10.83 0.00 0.00 3.71
166 167 4.457496 AGGATGACCGCACGCTGG 62.457 66.667 0.00 0.00 41.83 4.85
167 168 3.190849 CAGGATGACCGCACGCTG 61.191 66.667 0.00 0.00 39.69 5.18
168 169 4.457496 CCAGGATGACCGCACGCT 62.457 66.667 0.00 0.00 39.69 5.07
169 170 4.760047 ACCAGGATGACCGCACGC 62.760 66.667 0.00 0.00 39.69 5.34
170 171 1.663379 TAGACCAGGATGACCGCACG 61.663 60.000 0.00 0.00 39.69 5.34
171 172 0.753262 ATAGACCAGGATGACCGCAC 59.247 55.000 0.00 0.00 39.69 5.34
172 173 0.752658 CATAGACCAGGATGACCGCA 59.247 55.000 0.00 0.00 39.69 5.69
173 174 0.601311 GCATAGACCAGGATGACCGC 60.601 60.000 0.00 0.00 39.69 5.68
174 175 1.043816 AGCATAGACCAGGATGACCG 58.956 55.000 0.00 0.00 39.69 4.79
175 176 1.071385 CCAGCATAGACCAGGATGACC 59.929 57.143 0.00 0.00 39.69 4.02
176 177 1.542108 GCCAGCATAGACCAGGATGAC 60.542 57.143 0.00 0.00 39.69 3.06
177 178 0.761187 GCCAGCATAGACCAGGATGA 59.239 55.000 0.00 0.00 39.69 2.92
178 179 0.250640 GGCCAGCATAGACCAGGATG 60.251 60.000 0.00 0.00 0.00 3.51
208 209 1.474143 GGACTCCATGTGCTAGCTTCC 60.474 57.143 17.23 4.50 33.97 3.46
223 224 1.490490 TGCACCCTTCCATATGGACTC 59.510 52.381 24.47 9.88 45.39 3.36
227 228 1.342174 GCAATGCACCCTTCCATATGG 59.658 52.381 16.25 16.25 0.00 2.74
243 244 9.797642 TTTATCTACTCCATTCATATGTGCAAT 57.202 29.630 1.90 0.00 0.00 3.56
260 261 9.461312 TGTACATGGAGCAAAATTTTATCTACT 57.539 29.630 2.44 0.00 0.00 2.57
261 262 9.722056 CTGTACATGGAGCAAAATTTTATCTAC 57.278 33.333 2.44 5.50 0.00 2.59
267 268 6.150976 TCGATCTGTACATGGAGCAAAATTTT 59.849 34.615 0.00 0.00 0.00 1.82
271 272 4.200838 TCGATCTGTACATGGAGCAAAA 57.799 40.909 0.00 0.00 0.00 2.44
273 274 3.550842 CGATCGATCTGTACATGGAGCAA 60.551 47.826 22.43 0.00 0.00 3.91
284 285 3.316588 AGCATAGTCAACGATCGATCTGT 59.683 43.478 24.34 17.99 0.00 3.41
293 294 0.384309 CCGGCTAGCATAGTCAACGA 59.616 55.000 18.24 0.00 45.56 3.85
301 302 0.758734 AATCACTGCCGGCTAGCATA 59.241 50.000 29.70 12.01 43.09 3.14
341 342 1.012086 AATGCAGCGACAGCAGTATG 58.988 50.000 0.00 0.00 46.36 2.39
342 343 1.742761 AAATGCAGCGACAGCAGTAT 58.257 45.000 0.00 0.00 46.36 2.12
353 354 3.243636 CCTGGATCCATACAAAATGCAGC 60.244 47.826 16.63 0.00 37.49 5.25
354 355 3.319972 CCCTGGATCCATACAAAATGCAG 59.680 47.826 16.63 0.00 38.25 4.41
360 361 3.053019 TGCATTCCCTGGATCCATACAAA 60.053 43.478 16.63 8.09 0.00 2.83
363 364 2.373169 TCTGCATTCCCTGGATCCATAC 59.627 50.000 16.63 0.00 0.00 2.39
383 384 4.982916 ACACAGACACTTGTTTATCTCGTC 59.017 41.667 0.00 0.00 0.00 4.20
387 388 5.057149 GGTGACACAGACACTTGTTTATCT 58.943 41.667 8.08 0.00 38.20 1.98
435 437 8.754080 ACAGAGACTTGCTACAAGAGTATTAAT 58.246 33.333 13.94 0.00 0.00 1.40
440 442 4.218635 CCACAGAGACTTGCTACAAGAGTA 59.781 45.833 13.94 0.00 0.00 2.59
441 443 3.006323 CCACAGAGACTTGCTACAAGAGT 59.994 47.826 13.94 0.70 0.00 3.24
442 444 3.583806 CCACAGAGACTTGCTACAAGAG 58.416 50.000 13.94 1.86 0.00 2.85
443 445 2.289072 GCCACAGAGACTTGCTACAAGA 60.289 50.000 13.94 0.00 0.00 3.02
444 446 2.072298 GCCACAGAGACTTGCTACAAG 58.928 52.381 5.80 5.80 0.00 3.16
445 447 1.416030 TGCCACAGAGACTTGCTACAA 59.584 47.619 0.00 0.00 0.00 2.41
446 448 1.001293 CTGCCACAGAGACTTGCTACA 59.999 52.381 0.00 0.00 32.44 2.74
447 449 1.273606 TCTGCCACAGAGACTTGCTAC 59.726 52.381 0.00 0.00 35.39 3.58
448 450 1.632589 TCTGCCACAGAGACTTGCTA 58.367 50.000 0.00 0.00 35.39 3.49
449 451 2.445396 TCTGCCACAGAGACTTGCT 58.555 52.632 0.00 0.00 35.39 3.91
457 459 1.937191 TGTACATCCTCTGCCACAGA 58.063 50.000 0.00 0.00 38.25 3.41
458 460 2.996249 ATGTACATCCTCTGCCACAG 57.004 50.000 1.41 0.00 0.00 3.66
459 461 6.269769 TCATTATATGTACATCCTCTGCCACA 59.730 38.462 12.68 0.00 0.00 4.17
460 462 6.701340 TCATTATATGTACATCCTCTGCCAC 58.299 40.000 12.68 0.00 0.00 5.01
461 463 6.933514 TCATTATATGTACATCCTCTGCCA 57.066 37.500 12.68 0.00 0.00 4.92
462 464 7.390027 AGTTCATTATATGTACATCCTCTGCC 58.610 38.462 12.68 1.85 33.58 4.85
463 465 8.715998 CAAGTTCATTATATGTACATCCTCTGC 58.284 37.037 12.68 0.00 33.58 4.26
464 466 8.715998 GCAAGTTCATTATATGTACATCCTCTG 58.284 37.037 12.68 6.83 33.58 3.35
465 467 8.432013 TGCAAGTTCATTATATGTACATCCTCT 58.568 33.333 12.68 0.00 33.58 3.69
466 468 8.499162 GTGCAAGTTCATTATATGTACATCCTC 58.501 37.037 12.68 0.00 33.58 3.71
467 469 7.992608 TGTGCAAGTTCATTATATGTACATCCT 59.007 33.333 12.68 3.84 32.85 3.24
468 470 8.153479 TGTGCAAGTTCATTATATGTACATCC 57.847 34.615 12.68 0.00 32.85 3.51
471 473 9.830975 ACTATGTGCAAGTTCATTATATGTACA 57.169 29.630 0.00 0.00 40.08 2.90
473 475 9.191995 CGACTATGTGCAAGTTCATTATATGTA 57.808 33.333 0.00 0.00 0.00 2.29
475 477 8.076714 ACGACTATGTGCAAGTTCATTATATG 57.923 34.615 0.00 0.00 0.00 1.78
479 481 4.868171 GGACGACTATGTGCAAGTTCATTA 59.132 41.667 0.00 0.00 0.00 1.90
486 488 2.315925 ATGGGACGACTATGTGCAAG 57.684 50.000 0.00 0.00 30.91 4.01
487 489 2.764010 ACTATGGGACGACTATGTGCAA 59.236 45.455 0.00 0.00 30.91 4.08
499 501 4.023365 ACGAGAAAGCGTATACTATGGGAC 60.023 45.833 0.56 0.00 43.61 4.46
500 502 4.139786 ACGAGAAAGCGTATACTATGGGA 58.860 43.478 0.56 0.00 43.61 4.37
501 503 4.500603 ACGAGAAAGCGTATACTATGGG 57.499 45.455 0.56 0.00 43.61 4.00
511 513 7.148340 ACTACTAAGTAACATACGAGAAAGCGT 60.148 37.037 0.00 0.00 40.23 5.07
530 532 8.569641 GCGACTACTACCTACTAGTACTACTAA 58.430 40.741 0.00 0.00 36.95 2.24
531 533 7.175293 GGCGACTACTACCTACTAGTACTACTA 59.825 44.444 0.00 0.00 36.95 1.82
532 534 6.015772 GGCGACTACTACCTACTAGTACTACT 60.016 46.154 0.00 0.00 36.95 2.57
533 535 6.153756 GGCGACTACTACCTACTAGTACTAC 58.846 48.000 0.00 0.00 36.95 2.73
534 536 5.048643 CGGCGACTACTACCTACTAGTACTA 60.049 48.000 0.00 1.89 36.95 1.82
535 537 4.261825 CGGCGACTACTACCTACTAGTACT 60.262 50.000 0.00 0.00 36.95 2.73
536 538 3.984633 CGGCGACTACTACCTACTAGTAC 59.015 52.174 0.00 0.00 36.95 2.73
537 539 3.005897 CCGGCGACTACTACCTACTAGTA 59.994 52.174 9.30 1.89 36.95 1.82
538 540 2.224161 CCGGCGACTACTACCTACTAGT 60.224 54.545 9.30 0.00 39.24 2.57
563 565 7.064016 GCAGATGAGAAAGTTCTAGTACTTTGG 59.936 40.741 26.38 11.32 45.68 3.28
571 573 8.868916 GTTAAGAAGCAGATGAGAAAGTTCTAG 58.131 37.037 0.00 0.00 37.73 2.43
580 582 3.181329 TGGGGTTAAGAAGCAGATGAGA 58.819 45.455 0.00 0.00 0.00 3.27
585 587 1.271163 CGGTTGGGGTTAAGAAGCAGA 60.271 52.381 0.00 0.00 0.00 4.26
620 622 1.401552 CATGTAACCGAAGCCACATGG 59.598 52.381 0.00 0.00 42.83 3.66
652 654 9.983024 TTAGAAATAGAGATATACTCCCTGGAG 57.017 37.037 11.68 11.68 45.96 3.86
654 656 9.535170 TGTTAGAAATAGAGATATACTCCCTGG 57.465 37.037 0.00 0.00 45.96 4.45
665 1143 7.504403 CCATGTGGAGTGTTAGAAATAGAGAT 58.496 38.462 0.00 0.00 37.39 2.75
680 1158 1.434513 TTGAAGGGGCCATGTGGAGT 61.435 55.000 4.39 0.00 37.39 3.85
685 1163 3.473113 ACTATTTTGAAGGGGCCATGT 57.527 42.857 4.39 0.00 0.00 3.21
688 1166 7.591821 AGAATATTACTATTTTGAAGGGGCCA 58.408 34.615 4.39 0.00 0.00 5.36
689 1167 9.011095 GTAGAATATTACTATTTTGAAGGGGCC 57.989 37.037 0.00 0.00 0.00 5.80
710 1188 4.701651 TCGAACCTCGAACTAATGGTAGAA 59.298 41.667 0.00 0.00 46.90 2.10
739 1217 9.658475 TTTCAATAATTATATCTTGTTTCCGCG 57.342 29.630 0.00 0.00 0.00 6.46
794 1275 6.881602 GGGAGGCTGTTAAGGAATATCTTATG 59.118 42.308 0.00 0.00 0.00 1.90
795 1276 6.562608 TGGGAGGCTGTTAAGGAATATCTTAT 59.437 38.462 0.00 0.00 0.00 1.73
808 1292 0.690762 GAGGTGTTGGGAGGCTGTTA 59.309 55.000 0.00 0.00 0.00 2.41
810 1294 0.178903 TAGAGGTGTTGGGAGGCTGT 60.179 55.000 0.00 0.00 0.00 4.40
870 1380 3.903090 TCCGTCCTAGTTTCCCTTGTAAA 59.097 43.478 0.00 0.00 0.00 2.01
922 1439 4.947388 TCAAGCTTGTGAAAAACTACAGGT 59.053 37.500 25.19 0.00 0.00 4.00
934 1451 3.216800 AGCAGACATTTCAAGCTTGTGA 58.783 40.909 25.19 15.37 33.08 3.58
941 1458 3.318839 TGGGTTGAAGCAGACATTTCAAG 59.681 43.478 0.00 0.00 42.19 3.02
945 1462 3.896888 TGATTGGGTTGAAGCAGACATTT 59.103 39.130 0.00 0.00 0.00 2.32
1113 1648 1.693062 AGGTAGCAGCTGATCATCAGG 59.307 52.381 20.43 1.69 44.43 3.86
1114 1649 2.102757 ACAGGTAGCAGCTGATCATCAG 59.897 50.000 20.43 10.64 45.98 2.90
1115 1650 2.113807 ACAGGTAGCAGCTGATCATCA 58.886 47.619 20.43 0.00 45.98 3.07
1116 1651 2.906691 ACAGGTAGCAGCTGATCATC 57.093 50.000 20.43 5.52 45.98 2.92
1117 1652 3.199508 AGAAACAGGTAGCAGCTGATCAT 59.800 43.478 20.43 0.00 45.98 2.45
1620 2188 1.003355 CCTGGTGCCGTTGATGTCT 60.003 57.895 0.00 0.00 0.00 3.41
1624 2192 0.398696 TTACACCTGGTGCCGTTGAT 59.601 50.000 26.20 7.87 36.98 2.57
1711 2279 4.339247 CACAACTTTCATCACCTTGGACTT 59.661 41.667 0.00 0.00 0.00 3.01
1807 2375 1.736645 CCTGTACAAGACCGGCGTG 60.737 63.158 6.01 5.77 0.00 5.34
1815 2383 0.174845 CGGCGGAATCCTGTACAAGA 59.825 55.000 0.00 0.00 0.00 3.02
1848 2416 2.681778 CTGAGGAGTCCGGTGGCT 60.682 66.667 2.76 0.00 0.00 4.75
1936 4948 1.086696 GTACACGTACGTAGGCCAGA 58.913 55.000 22.34 0.00 0.00 3.86
1973 5618 2.030457 GGTCGTACATTTTCGCATGGAG 59.970 50.000 0.00 0.00 0.00 3.86
1995 5640 1.210931 CCATGCAACGTTGGCAGAG 59.789 57.895 28.33 20.02 45.68 3.35
1996 5641 3.353600 CCATGCAACGTTGGCAGA 58.646 55.556 28.33 7.64 45.68 4.26
2023 5668 0.533491 GGGCACATGCACATGATGTT 59.467 50.000 17.19 0.00 45.57 2.71
2024 5669 2.195389 GGGCACATGCACATGATGT 58.805 52.632 17.19 0.00 45.57 3.06
2043 5688 8.465999 TCACAAAGTAACAATGATGTGAAAGTT 58.534 29.630 4.11 0.00 42.78 2.66
2125 5770 1.114627 GGATTTCAACATGGCCCTCC 58.885 55.000 0.00 0.00 0.00 4.30
2127 5772 0.039618 ACGGATTTCAACATGGCCCT 59.960 50.000 0.00 0.00 0.00 5.19
2130 5775 5.689383 ACATATACGGATTTCAACATGGC 57.311 39.130 0.00 0.00 0.00 4.40
2280 6062 7.004086 TCAGAGGATAAAAGCCAAAGAGAAAA 58.996 34.615 0.00 0.00 0.00 2.29
2281 6063 6.542821 TCAGAGGATAAAAGCCAAAGAGAAA 58.457 36.000 0.00 0.00 0.00 2.52
2282 6064 6.126863 TCAGAGGATAAAAGCCAAAGAGAA 57.873 37.500 0.00 0.00 0.00 2.87
2283 6065 5.762179 TCAGAGGATAAAAGCCAAAGAGA 57.238 39.130 0.00 0.00 0.00 3.10
2298 6080 4.670896 TTACATCGATGCATTCAGAGGA 57.329 40.909 25.11 0.00 0.00 3.71
2347 6129 4.591321 ACTGGTTGGTCCATAATGTCAT 57.409 40.909 0.00 0.00 46.12 3.06
2348 6130 4.202514 TGAACTGGTTGGTCCATAATGTCA 60.203 41.667 0.00 0.00 46.12 3.58
2349 6131 4.156008 GTGAACTGGTTGGTCCATAATGTC 59.844 45.833 0.00 0.00 46.12 3.06
2350 6132 4.079253 GTGAACTGGTTGGTCCATAATGT 58.921 43.478 0.00 0.00 46.12 2.71
2351 6133 3.443681 GGTGAACTGGTTGGTCCATAATG 59.556 47.826 0.00 0.00 46.12 1.90
2352 6134 3.075283 TGGTGAACTGGTTGGTCCATAAT 59.925 43.478 0.00 0.00 46.12 1.28
2353 6135 2.443632 TGGTGAACTGGTTGGTCCATAA 59.556 45.455 0.00 0.00 46.12 1.90
2354 6136 2.058705 TGGTGAACTGGTTGGTCCATA 58.941 47.619 0.00 0.00 46.12 2.74
2355 6137 0.850100 TGGTGAACTGGTTGGTCCAT 59.150 50.000 0.00 0.00 46.12 3.41
2356 6138 0.626382 TTGGTGAACTGGTTGGTCCA 59.374 50.000 0.00 0.00 45.01 4.02
2358 6140 3.878160 TTTTTGGTGAACTGGTTGGTC 57.122 42.857 0.00 0.00 0.00 4.02
2382 6165 0.317479 CCCTTCTCCGTCAAGTTCGT 59.683 55.000 0.00 0.00 0.00 3.85
2661 6631 8.719560 AAAGTTACGGCTGGAAATTTTAAAAA 57.280 26.923 10.11 0.00 0.00 1.94
2673 6643 3.799963 GGAAAACAAAAAGTTACGGCTGG 59.200 43.478 0.00 0.00 40.26 4.85
2693 6663 1.073125 TGCTCCCTTGTCAATTTCGGA 59.927 47.619 0.00 0.00 0.00 4.55
2775 6745 2.231964 TGAAACATTGGCTTGGCTCATC 59.768 45.455 0.00 0.00 0.00 2.92
2874 6847 8.261492 CTATGTCTTTTCACAGAAACATAGCT 57.739 34.615 13.05 0.00 32.56 3.32
2876 6849 8.261492 AGCTATGTCTTTTCACAGAAACATAG 57.739 34.615 17.51 17.51 38.94 2.23
3069 7054 7.550551 TGTTTACCTTGCAAAATTGTTTCATCA 59.449 29.630 0.00 0.00 0.00 3.07
3124 7109 7.945033 TCAAGTGGCATTTTTCAGTTTAATC 57.055 32.000 0.00 0.00 0.00 1.75
3199 7184 2.296190 ACGGGAATTTCCTTGCAACTTC 59.704 45.455 14.95 0.00 36.57 3.01
3217 7202 2.873472 CCACTACTAGCTCTGAGTACGG 59.127 54.545 6.53 0.00 0.00 4.02
3225 7210 1.096386 CCGTCGCCACTACTAGCTCT 61.096 60.000 0.00 0.00 0.00 4.09
3256 7241 3.142174 CCTTGCCGATTTTCCTATCCTC 58.858 50.000 0.00 0.00 0.00 3.71
3294 7279 1.881324 GTTGTTAGCCGCCCTTTGTAA 59.119 47.619 0.00 0.00 0.00 2.41
3299 7284 3.053896 GCGTTGTTAGCCGCCCTT 61.054 61.111 0.00 0.00 43.96 3.95
3393 7378 0.674895 GCTGGCACAAGGTCTCGATT 60.675 55.000 0.00 0.00 38.70 3.34
3453 7438 1.202639 AGCAACAGACGACCATTGTCA 60.203 47.619 0.00 0.00 41.85 3.58
3465 7450 3.674410 CGAGCTCATAGACAAGCAACAGA 60.674 47.826 15.40 0.00 41.06 3.41
3570 7557 2.733593 GTTGCGACGCCGAGAAGT 60.734 61.111 18.69 0.00 38.22 3.01
3636 7623 1.188871 TGATGTCCCGGTGTAGCACA 61.189 55.000 0.00 0.00 35.86 4.57
3814 7801 1.811778 ATATCAGAGGCTGGGCTCAA 58.188 50.000 22.70 12.65 31.51 3.02
3903 7890 2.476185 GGCGATGAGATTGTTTCGGTTG 60.476 50.000 0.00 0.00 32.45 3.77
3915 7902 1.227350 CTTGATGGCGGCGATGAGA 60.227 57.895 12.98 0.00 0.00 3.27
4032 8019 0.037303 CCTCAACACACATCAGCCCT 59.963 55.000 0.00 0.00 0.00 5.19
4047 8034 1.202302 CGCTTATCACGCTCTTCCTCA 60.202 52.381 0.00 0.00 0.00 3.86
4051 8038 1.491505 GGCCGCTTATCACGCTCTTC 61.492 60.000 0.00 0.00 0.00 2.87
4062 8049 1.211703 TCTTTGATGGATGGCCGCTTA 59.788 47.619 0.00 0.00 36.79 3.09
4099 8086 0.394080 AGAGATTGCTCCTGCTTGGC 60.394 55.000 0.00 0.00 42.30 4.52
4107 8094 1.137872 ACGGATGTCAGAGATTGCTCC 59.862 52.381 0.00 0.00 42.30 4.70
4133 8120 6.457934 CGTCCTCATTGAAGAATCTTTCATGG 60.458 42.308 12.55 5.45 36.97 3.66
4160 8147 6.390721 ACTAGTATGGAATGAAATCGATCCG 58.609 40.000 0.00 0.00 34.60 4.18
4172 8159 6.078664 ACCTTGCTAGCTACTAGTATGGAAT 58.921 40.000 22.65 6.74 42.29 3.01
4184 8171 1.909302 AGAAGCCAACCTTGCTAGCTA 59.091 47.619 17.23 7.59 38.34 3.32
4185 8172 0.695347 AGAAGCCAACCTTGCTAGCT 59.305 50.000 17.23 0.00 38.34 3.32
4186 8173 1.090728 GAGAAGCCAACCTTGCTAGC 58.909 55.000 8.10 8.10 38.34 3.42
4333 8320 5.833406 TGTTACAATGACATAGCAATGGG 57.167 39.130 0.00 0.00 37.43 4.00
4389 8377 4.974645 AGTTTCATGTGGTAGGTCTTGA 57.025 40.909 0.00 0.00 0.00 3.02
4444 8432 8.567948 CAGGTGAAAATAATGTCTTTACTGTGT 58.432 33.333 0.00 0.00 0.00 3.72
4455 8443 6.549433 AATCCATGCAGGTGAAAATAATGT 57.451 33.333 0.00 0.00 39.02 2.71
4470 8458 3.848272 TCGAAAGACCAAAATCCATGC 57.152 42.857 0.00 0.00 33.31 4.06
4499 8488 0.914902 AGGAGGTAACAAGGGAGGCC 60.915 60.000 0.00 0.00 41.41 5.19
4501 8490 3.399952 TCTAGGAGGTAACAAGGGAGG 57.600 52.381 0.00 0.00 41.41 4.30
4598 8587 0.098200 CGACACCATCATGCAGCAAG 59.902 55.000 0.00 0.00 0.00 4.01
4617 8606 3.243334 CGAATAAGTACCCTCCGGTTCTC 60.243 52.174 0.00 0.00 40.58 2.87
4620 8609 1.137675 GCGAATAAGTACCCTCCGGTT 59.862 52.381 0.00 0.00 40.58 4.44
4703 8695 1.859302 ACTGCTTTCCCCAACACAAA 58.141 45.000 0.00 0.00 0.00 2.83
4869 8862 3.492383 CGTACTTTCGCTACTAGGATCGA 59.508 47.826 0.00 0.00 0.00 3.59
4881 8874 1.069378 CGGAGGTGTCGTACTTTCGC 61.069 60.000 0.00 0.00 0.00 4.70
4924 8917 1.071019 CGTGAGTTCATGGGACGTCG 61.071 60.000 9.92 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.