Multiple sequence alignment - TraesCS2A01G054400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G054400 chr2A 100.000 2980 0 0 1 2980 22627152 22630131 0.000000e+00 5504
1 TraesCS2A01G054400 chr2A 99.952 2080 1 0 787 2866 22589672 22591751 0.000000e+00 3836
2 TraesCS2A01G054400 chr2A 93.982 2127 67 27 787 2866 772956104 772958216 0.000000e+00 3162
3 TraesCS2A01G054400 chr2A 92.887 2137 83 21 787 2866 700237699 700235575 0.000000e+00 3040
4 TraesCS2A01G054400 chr2A 99.483 773 4 0 1 773 22596633 22597405 0.000000e+00 1406
5 TraesCS2A01G054400 chr2A 84.259 216 18 8 3 202 439492635 439492420 2.340000e-46 196
6 TraesCS2A01G054400 chr2A 100.000 89 0 0 2892 2980 22597689 22597777 6.610000e-37 165
7 TraesCS2A01G054400 chr3A 97.006 2104 36 6 787 2866 136527778 136525678 0.000000e+00 3511
8 TraesCS2A01G054400 chr3A 83.645 214 18 11 3 199 54443852 54443639 5.070000e-43 185
9 TraesCS2A01G054400 chr1A 96.233 2097 57 5 790 2866 97163577 97161483 0.000000e+00 3415
10 TraesCS2A01G054400 chr1A 84.834 211 11 3 1 196 223819143 223819347 3.030000e-45 193
11 TraesCS2A01G054400 chr2D 93.773 2136 63 23 787 2866 647524529 647522408 0.000000e+00 3144
12 TraesCS2A01G054400 chr5A 98.435 1214 19 0 1653 2866 383829990 383831203 0.000000e+00 2137
13 TraesCS2A01G054400 chr5A 94.649 897 25 4 787 1661 383828674 383829569 0.000000e+00 1369
14 TraesCS2A01G054400 chr4B 93.565 1352 55 15 914 2234 223386469 223387819 0.000000e+00 1986
15 TraesCS2A01G054400 chr4B 90.076 655 15 11 2235 2866 223387947 223388574 0.000000e+00 804
16 TraesCS2A01G054400 chr7D 92.976 1139 46 17 787 1895 11127567 11126433 0.000000e+00 1629
17 TraesCS2A01G054400 chr7D 90.995 633 18 5 2235 2866 11125876 11125282 0.000000e+00 817
18 TraesCS2A01G054400 chr1B 93.565 948 56 2 1292 2234 212662543 212661596 0.000000e+00 1408
19 TraesCS2A01G054400 chr1B 91.162 396 24 4 2235 2620 212661473 212661079 7.320000e-146 527
20 TraesCS2A01G054400 chr6B 89.773 352 34 2 213 563 211882762 211883112 1.630000e-122 449
21 TraesCS2A01G054400 chr6B 86.395 147 11 3 635 773 211883111 211883256 5.140000e-33 152
22 TraesCS2A01G054400 chrUn 79.029 577 81 23 213 773 281320340 281319788 2.820000e-95 359
23 TraesCS2A01G054400 chrUn 79.029 577 81 23 213 773 281327260 281326708 2.820000e-95 359
24 TraesCS2A01G054400 chrUn 79.029 577 81 23 213 773 303218852 303218300 2.820000e-95 359
25 TraesCS2A01G054400 chr2B 87.678 211 11 1 1 196 278873727 278873937 6.420000e-57 231
26 TraesCS2A01G054400 chr6A 85.520 221 13 5 1 203 249209711 249209492 2.330000e-51 213
27 TraesCS2A01G054400 chr5B 83.645 214 20 4 1 199 711055696 711055483 1.410000e-43 187
28 TraesCS2A01G054400 chr3B 80.608 263 28 13 923 1183 795063573 795063332 6.560000e-42 182
29 TraesCS2A01G054400 chr4D 84.138 145 9 2 1 131 504238804 504238948 8.670000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G054400 chr2A 22627152 22630131 2979 False 5504.0 5504 100.0000 1 2980 1 chr2A.!!$F2 2979
1 TraesCS2A01G054400 chr2A 22589672 22591751 2079 False 3836.0 3836 99.9520 787 2866 1 chr2A.!!$F1 2079
2 TraesCS2A01G054400 chr2A 772956104 772958216 2112 False 3162.0 3162 93.9820 787 2866 1 chr2A.!!$F3 2079
3 TraesCS2A01G054400 chr2A 700235575 700237699 2124 True 3040.0 3040 92.8870 787 2866 1 chr2A.!!$R2 2079
4 TraesCS2A01G054400 chr2A 22596633 22597777 1144 False 785.5 1406 99.7415 1 2980 2 chr2A.!!$F4 2979
5 TraesCS2A01G054400 chr3A 136525678 136527778 2100 True 3511.0 3511 97.0060 787 2866 1 chr3A.!!$R2 2079
6 TraesCS2A01G054400 chr1A 97161483 97163577 2094 True 3415.0 3415 96.2330 790 2866 1 chr1A.!!$R1 2076
7 TraesCS2A01G054400 chr2D 647522408 647524529 2121 True 3144.0 3144 93.7730 787 2866 1 chr2D.!!$R1 2079
8 TraesCS2A01G054400 chr5A 383828674 383831203 2529 False 1753.0 2137 96.5420 787 2866 2 chr5A.!!$F1 2079
9 TraesCS2A01G054400 chr4B 223386469 223388574 2105 False 1395.0 1986 91.8205 914 2866 2 chr4B.!!$F1 1952
10 TraesCS2A01G054400 chr7D 11125282 11127567 2285 True 1223.0 1629 91.9855 787 2866 2 chr7D.!!$R1 2079
11 TraesCS2A01G054400 chr1B 212661079 212662543 1464 True 967.5 1408 92.3635 1292 2620 2 chr1B.!!$R1 1328
12 TraesCS2A01G054400 chrUn 281319788 281320340 552 True 359.0 359 79.0290 213 773 1 chrUn.!!$R1 560
13 TraesCS2A01G054400 chrUn 281326708 281327260 552 True 359.0 359 79.0290 213 773 1 chrUn.!!$R2 560
14 TraesCS2A01G054400 chrUn 303218300 303218852 552 True 359.0 359 79.0290 213 773 1 chrUn.!!$R3 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 649 0.03213 TCAATCCGATCGTAGCAGGC 59.968 55.0 15.09 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2816 3964 4.322953 GGAATGGTCATTGTGAATTGGCTT 60.323 41.667 0.43 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
203 204 7.414436 ACGCATGGACATGTTTTGTTATATAC 58.586 34.615 13.29 0.00 39.18 1.47
204 205 7.282224 ACGCATGGACATGTTTTGTTATATACT 59.718 33.333 13.29 0.00 39.18 2.12
205 206 7.587392 CGCATGGACATGTTTTGTTATATACTG 59.413 37.037 13.29 0.00 39.18 2.74
206 207 7.379529 GCATGGACATGTTTTGTTATATACTGC 59.620 37.037 13.29 0.00 39.18 4.40
207 208 8.623903 CATGGACATGTTTTGTTATATACTGCT 58.376 33.333 0.00 0.00 39.18 4.24
208 209 8.574251 TGGACATGTTTTGTTATATACTGCTT 57.426 30.769 0.00 0.00 39.18 3.91
209 210 8.673711 TGGACATGTTTTGTTATATACTGCTTC 58.326 33.333 0.00 0.00 39.18 3.86
210 211 7.850982 GGACATGTTTTGTTATATACTGCTTCG 59.149 37.037 0.00 0.00 39.18 3.79
211 212 8.487313 ACATGTTTTGTTATATACTGCTTCGA 57.513 30.769 0.00 0.00 33.74 3.71
212 213 9.109393 ACATGTTTTGTTATATACTGCTTCGAT 57.891 29.630 0.00 0.00 33.74 3.59
213 214 9.935682 CATGTTTTGTTATATACTGCTTCGATT 57.064 29.630 0.00 0.00 0.00 3.34
228 229 8.999431 ACTGCTTCGATTAATTTTAGAGAAACA 58.001 29.630 0.00 0.00 0.00 2.83
229 230 9.825972 CTGCTTCGATTAATTTTAGAGAAACAA 57.174 29.630 0.00 0.00 0.00 2.83
230 231 9.607285 TGCTTCGATTAATTTTAGAGAAACAAC 57.393 29.630 0.00 0.00 0.00 3.32
231 232 9.607285 GCTTCGATTAATTTTAGAGAAACAACA 57.393 29.630 0.00 0.00 0.00 3.33
267 268 8.847567 CGTAGGATTGTTTAATATACTGCTACG 58.152 37.037 0.00 0.00 0.00 3.51
268 269 9.903682 GTAGGATTGTTTAATATACTGCTACGA 57.096 33.333 0.00 0.00 0.00 3.43
270 271 9.998106 AGGATTGTTTAATATACTGCTACGATT 57.002 29.630 0.00 0.00 0.00 3.34
284 285 8.597662 ACTGCTACGATTAAAACAAAACTAGA 57.402 30.769 0.00 0.00 0.00 2.43
285 286 9.216117 ACTGCTACGATTAAAACAAAACTAGAT 57.784 29.630 0.00 0.00 0.00 1.98
286 287 9.478019 CTGCTACGATTAAAACAAAACTAGATG 57.522 33.333 0.00 0.00 0.00 2.90
287 288 8.995220 TGCTACGATTAAAACAAAACTAGATGT 58.005 29.630 0.00 0.00 0.00 3.06
288 289 9.821662 GCTACGATTAAAACAAAACTAGATGTT 57.178 29.630 0.00 2.10 41.31 2.71
309 310 9.482627 GATGTTTTACATAAGAGTCCTATGAGG 57.517 37.037 14.45 0.00 39.27 3.86
310 311 8.375493 TGTTTTACATAAGAGTCCTATGAGGT 57.625 34.615 14.45 0.00 36.53 3.85
311 312 8.822805 TGTTTTACATAAGAGTCCTATGAGGTT 58.177 33.333 14.45 0.00 36.53 3.50
314 315 6.636562 ACATAAGAGTCCTATGAGGTTACG 57.363 41.667 14.45 0.00 36.53 3.18
315 316 5.009811 ACATAAGAGTCCTATGAGGTTACGC 59.990 44.000 14.45 0.00 36.53 4.42
316 317 3.014304 AGAGTCCTATGAGGTTACGCA 57.986 47.619 0.00 0.00 36.53 5.24
317 318 3.362706 AGAGTCCTATGAGGTTACGCAA 58.637 45.455 0.00 0.00 36.53 4.85
318 319 3.961408 AGAGTCCTATGAGGTTACGCAAT 59.039 43.478 0.00 0.00 36.53 3.56
319 320 5.138276 AGAGTCCTATGAGGTTACGCAATA 58.862 41.667 0.00 0.00 36.53 1.90
320 321 5.241949 AGAGTCCTATGAGGTTACGCAATAG 59.758 44.000 0.00 0.00 36.53 1.73
321 322 5.138276 AGTCCTATGAGGTTACGCAATAGA 58.862 41.667 0.00 0.00 36.53 1.98
322 323 5.597182 AGTCCTATGAGGTTACGCAATAGAA 59.403 40.000 0.00 0.00 36.53 2.10
323 324 6.097839 AGTCCTATGAGGTTACGCAATAGAAA 59.902 38.462 0.00 0.00 36.53 2.52
324 325 6.200475 GTCCTATGAGGTTACGCAATAGAAAC 59.800 42.308 0.00 0.00 36.53 2.78
325 326 6.046593 CCTATGAGGTTACGCAATAGAAACA 58.953 40.000 0.00 0.00 0.00 2.83
326 327 6.201044 CCTATGAGGTTACGCAATAGAAACAG 59.799 42.308 0.00 0.00 0.00 3.16
327 328 4.250464 TGAGGTTACGCAATAGAAACAGG 58.750 43.478 0.00 0.00 0.00 4.00
328 329 4.251268 GAGGTTACGCAATAGAAACAGGT 58.749 43.478 0.00 0.00 0.00 4.00
329 330 4.251268 AGGTTACGCAATAGAAACAGGTC 58.749 43.478 0.00 0.00 0.00 3.85
330 331 3.373130 GGTTACGCAATAGAAACAGGTCC 59.627 47.826 0.00 0.00 0.00 4.46
331 332 2.851263 ACGCAATAGAAACAGGTCCA 57.149 45.000 0.00 0.00 0.00 4.02
332 333 3.350219 ACGCAATAGAAACAGGTCCAT 57.650 42.857 0.00 0.00 0.00 3.41
333 334 3.270877 ACGCAATAGAAACAGGTCCATC 58.729 45.455 0.00 0.00 0.00 3.51
334 335 2.614057 CGCAATAGAAACAGGTCCATCC 59.386 50.000 0.00 0.00 0.00 3.51
335 336 2.614057 GCAATAGAAACAGGTCCATCCG 59.386 50.000 0.00 0.00 41.99 4.18
336 337 2.614057 CAATAGAAACAGGTCCATCCGC 59.386 50.000 0.00 0.00 41.99 5.54
337 338 1.271856 TAGAAACAGGTCCATCCGCA 58.728 50.000 0.00 0.00 41.99 5.69
338 339 0.400213 AGAAACAGGTCCATCCGCAA 59.600 50.000 0.00 0.00 41.99 4.85
339 340 0.804989 GAAACAGGTCCATCCGCAAG 59.195 55.000 0.00 0.00 41.99 4.01
340 341 0.110486 AAACAGGTCCATCCGCAAGT 59.890 50.000 0.00 0.00 41.99 3.16
341 342 0.321653 AACAGGTCCATCCGCAAGTC 60.322 55.000 0.00 0.00 41.99 3.01
342 343 1.296392 CAGGTCCATCCGCAAGTCA 59.704 57.895 0.00 0.00 41.99 3.41
343 344 0.321564 CAGGTCCATCCGCAAGTCAA 60.322 55.000 0.00 0.00 41.99 3.18
344 345 0.321653 AGGTCCATCCGCAAGTCAAC 60.322 55.000 0.00 0.00 41.99 3.18
345 346 0.605319 GGTCCATCCGCAAGTCAACA 60.605 55.000 0.00 0.00 0.00 3.33
346 347 0.798776 GTCCATCCGCAAGTCAACAG 59.201 55.000 0.00 0.00 0.00 3.16
347 348 0.684535 TCCATCCGCAAGTCAACAGA 59.315 50.000 0.00 0.00 0.00 3.41
348 349 1.071542 TCCATCCGCAAGTCAACAGAA 59.928 47.619 0.00 0.00 0.00 3.02
349 350 1.879380 CCATCCGCAAGTCAACAGAAA 59.121 47.619 0.00 0.00 0.00 2.52
350 351 2.293122 CCATCCGCAAGTCAACAGAAAA 59.707 45.455 0.00 0.00 0.00 2.29
351 352 3.243367 CCATCCGCAAGTCAACAGAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
379 380 0.523072 TGTCCTAGACACGTTACGGC 59.477 55.000 10.20 0.00 37.67 5.68
380 381 0.179153 GTCCTAGACACGTTACGGCC 60.179 60.000 10.20 0.00 32.09 6.13
381 382 1.226491 CCTAGACACGTTACGGCCG 60.226 63.158 26.86 26.86 0.00 6.13
382 383 1.226491 CTAGACACGTTACGGCCGG 60.226 63.158 31.76 14.36 0.00 6.13
383 384 3.340953 TAGACACGTTACGGCCGGC 62.341 63.158 31.76 21.18 0.00 6.13
387 388 4.825252 ACGTTACGGCCGGCCATC 62.825 66.667 42.78 26.88 35.37 3.51
388 389 4.823419 CGTTACGGCCGGCCATCA 62.823 66.667 42.78 25.32 35.37 3.07
389 390 2.437002 GTTACGGCCGGCCATCAA 60.437 61.111 42.78 29.26 35.37 2.57
390 391 2.124901 TTACGGCCGGCCATCAAG 60.125 61.111 42.78 28.87 35.37 3.02
391 392 3.690685 TTACGGCCGGCCATCAAGG 62.691 63.158 42.78 28.12 41.84 3.61
393 394 4.794648 CGGCCGGCCATCAAGGAA 62.795 66.667 42.78 0.00 41.22 3.36
394 395 2.362375 GGCCGGCCATCAAGGAAA 60.362 61.111 40.73 0.00 41.22 3.13
395 396 1.981853 GGCCGGCCATCAAGGAAAA 60.982 57.895 40.73 0.00 41.22 2.29
396 397 1.512694 GCCGGCCATCAAGGAAAAG 59.487 57.895 18.11 0.00 41.22 2.27
397 398 1.512694 CCGGCCATCAAGGAAAAGC 59.487 57.895 2.24 0.00 41.22 3.51
398 399 1.250154 CCGGCCATCAAGGAAAAGCA 61.250 55.000 2.24 0.00 41.22 3.91
399 400 0.602562 CGGCCATCAAGGAAAAGCAA 59.397 50.000 2.24 0.00 41.22 3.91
400 401 1.205417 CGGCCATCAAGGAAAAGCAAT 59.795 47.619 2.24 0.00 41.22 3.56
401 402 2.426738 CGGCCATCAAGGAAAAGCAATA 59.573 45.455 2.24 0.00 41.22 1.90
402 403 3.119173 CGGCCATCAAGGAAAAGCAATAA 60.119 43.478 2.24 0.00 41.22 1.40
403 404 4.620332 CGGCCATCAAGGAAAAGCAATAAA 60.620 41.667 2.24 0.00 41.22 1.40
404 405 5.430886 GGCCATCAAGGAAAAGCAATAAAT 58.569 37.500 0.00 0.00 41.22 1.40
405 406 6.581712 GGCCATCAAGGAAAAGCAATAAATA 58.418 36.000 0.00 0.00 41.22 1.40
406 407 7.047271 GGCCATCAAGGAAAAGCAATAAATAA 58.953 34.615 0.00 0.00 41.22 1.40
407 408 7.552330 GGCCATCAAGGAAAAGCAATAAATAAA 59.448 33.333 0.00 0.00 41.22 1.40
408 409 8.606602 GCCATCAAGGAAAAGCAATAAATAAAG 58.393 33.333 0.00 0.00 41.22 1.85
409 410 9.874205 CCATCAAGGAAAAGCAATAAATAAAGA 57.126 29.630 0.00 0.00 41.22 2.52
411 412 8.986477 TCAAGGAAAAGCAATAAATAAAGAGC 57.014 30.769 0.00 0.00 0.00 4.09
412 413 8.034804 TCAAGGAAAAGCAATAAATAAAGAGCC 58.965 33.333 0.00 0.00 0.00 4.70
413 414 6.878317 AGGAAAAGCAATAAATAAAGAGCCC 58.122 36.000 0.00 0.00 0.00 5.19
414 415 6.049149 GGAAAAGCAATAAATAAAGAGCCCC 58.951 40.000 0.00 0.00 0.00 5.80
415 416 6.351796 GGAAAAGCAATAAATAAAGAGCCCCA 60.352 38.462 0.00 0.00 0.00 4.96
416 417 5.598416 AAGCAATAAATAAAGAGCCCCAC 57.402 39.130 0.00 0.00 0.00 4.61
417 418 4.609301 AGCAATAAATAAAGAGCCCCACA 58.391 39.130 0.00 0.00 0.00 4.17
418 419 4.402474 AGCAATAAATAAAGAGCCCCACAC 59.598 41.667 0.00 0.00 0.00 3.82
419 420 4.441495 GCAATAAATAAAGAGCCCCACACC 60.441 45.833 0.00 0.00 0.00 4.16
420 421 2.990740 AAATAAAGAGCCCCACACCA 57.009 45.000 0.00 0.00 0.00 4.17
421 422 2.990740 AATAAAGAGCCCCACACCAA 57.009 45.000 0.00 0.00 0.00 3.67
422 423 2.215942 ATAAAGAGCCCCACACCAAC 57.784 50.000 0.00 0.00 0.00 3.77
423 424 0.847373 TAAAGAGCCCCACACCAACA 59.153 50.000 0.00 0.00 0.00 3.33
424 425 0.755327 AAAGAGCCCCACACCAACAC 60.755 55.000 0.00 0.00 0.00 3.32
425 426 2.958578 AAGAGCCCCACACCAACACG 62.959 60.000 0.00 0.00 0.00 4.49
426 427 3.767630 GAGCCCCACACCAACACGT 62.768 63.158 0.00 0.00 0.00 4.49
427 428 2.831284 GCCCCACACCAACACGTT 60.831 61.111 0.00 0.00 0.00 3.99
428 429 2.419739 GCCCCACACCAACACGTTT 61.420 57.895 0.00 0.00 0.00 3.60
429 430 1.950973 GCCCCACACCAACACGTTTT 61.951 55.000 0.00 0.00 0.00 2.43
430 431 0.101579 CCCCACACCAACACGTTTTC 59.898 55.000 0.00 0.00 0.00 2.29
431 432 0.811915 CCCACACCAACACGTTTTCA 59.188 50.000 0.00 0.00 0.00 2.69
432 433 1.407258 CCCACACCAACACGTTTTCAT 59.593 47.619 0.00 0.00 0.00 2.57
433 434 2.458951 CCACACCAACACGTTTTCATG 58.541 47.619 0.00 0.00 0.00 3.07
434 435 2.098280 CCACACCAACACGTTTTCATGA 59.902 45.455 0.00 0.00 0.00 3.07
435 436 3.428180 CCACACCAACACGTTTTCATGAA 60.428 43.478 3.38 3.38 0.00 2.57
436 437 4.358851 CACACCAACACGTTTTCATGAAT 58.641 39.130 9.40 0.00 0.00 2.57
437 438 4.206814 CACACCAACACGTTTTCATGAATG 59.793 41.667 9.40 7.09 0.00 2.67
438 439 3.735240 CACCAACACGTTTTCATGAATGG 59.265 43.478 16.79 16.79 34.58 3.16
439 440 3.634448 ACCAACACGTTTTCATGAATGGA 59.366 39.130 22.69 1.97 33.46 3.41
440 441 4.280677 ACCAACACGTTTTCATGAATGGAT 59.719 37.500 22.69 9.07 33.46 3.41
441 442 4.858692 CCAACACGTTTTCATGAATGGATC 59.141 41.667 14.26 0.00 31.96 3.36
442 443 4.340894 ACACGTTTTCATGAATGGATCG 57.659 40.909 9.40 8.09 0.00 3.69
443 444 3.126858 ACACGTTTTCATGAATGGATCGG 59.873 43.478 9.40 3.33 0.00 4.18
444 445 3.373748 CACGTTTTCATGAATGGATCGGA 59.626 43.478 9.40 0.00 0.00 4.55
445 446 4.035558 CACGTTTTCATGAATGGATCGGAT 59.964 41.667 9.40 0.00 0.00 4.18
446 447 4.640201 ACGTTTTCATGAATGGATCGGATT 59.360 37.500 9.40 0.00 0.00 3.01
447 448 4.971830 CGTTTTCATGAATGGATCGGATTG 59.028 41.667 9.40 0.00 0.00 2.67
448 449 5.449041 CGTTTTCATGAATGGATCGGATTGT 60.449 40.000 9.40 0.00 0.00 2.71
449 450 5.503662 TTTCATGAATGGATCGGATTGTG 57.496 39.130 9.40 0.00 0.00 3.33
450 451 4.420522 TCATGAATGGATCGGATTGTGA 57.579 40.909 0.00 0.00 0.00 3.58
451 452 4.976864 TCATGAATGGATCGGATTGTGAT 58.023 39.130 0.00 0.00 0.00 3.06
452 453 4.758165 TCATGAATGGATCGGATTGTGATG 59.242 41.667 0.00 0.00 0.00 3.07
453 454 3.479489 TGAATGGATCGGATTGTGATGG 58.521 45.455 0.00 0.00 0.00 3.51
454 455 3.117926 TGAATGGATCGGATTGTGATGGT 60.118 43.478 0.00 0.00 0.00 3.55
455 456 2.620251 TGGATCGGATTGTGATGGTC 57.380 50.000 0.00 0.00 0.00 4.02
456 457 2.118679 TGGATCGGATTGTGATGGTCT 58.881 47.619 0.00 0.00 0.00 3.85
457 458 3.304829 TGGATCGGATTGTGATGGTCTA 58.695 45.455 0.00 0.00 0.00 2.59
458 459 3.709141 TGGATCGGATTGTGATGGTCTAA 59.291 43.478 0.00 0.00 0.00 2.10
459 460 4.347876 TGGATCGGATTGTGATGGTCTAAT 59.652 41.667 0.00 0.00 0.00 1.73
460 461 4.932200 GGATCGGATTGTGATGGTCTAATC 59.068 45.833 0.00 0.00 0.00 1.75
461 462 4.336889 TCGGATTGTGATGGTCTAATCC 57.663 45.455 0.00 0.00 43.17 3.01
462 463 3.967326 TCGGATTGTGATGGTCTAATCCT 59.033 43.478 16.73 0.00 43.98 3.24
463 464 4.408921 TCGGATTGTGATGGTCTAATCCTT 59.591 41.667 16.73 0.00 43.98 3.36
464 465 4.752101 CGGATTGTGATGGTCTAATCCTTC 59.248 45.833 16.73 1.54 43.98 3.46
465 466 4.752101 GGATTGTGATGGTCTAATCCTTCG 59.248 45.833 0.00 0.00 43.23 3.79
466 467 4.819105 TTGTGATGGTCTAATCCTTCGT 57.181 40.909 0.00 0.00 35.32 3.85
467 468 4.123497 TGTGATGGTCTAATCCTTCGTG 57.877 45.455 0.00 0.00 35.32 4.35
468 469 2.866762 GTGATGGTCTAATCCTTCGTGC 59.133 50.000 0.00 0.00 35.32 5.34
469 470 2.499693 TGATGGTCTAATCCTTCGTGCA 59.500 45.455 0.00 0.00 35.32 4.57
470 471 2.380084 TGGTCTAATCCTTCGTGCAC 57.620 50.000 6.82 6.82 0.00 4.57
471 472 1.621317 TGGTCTAATCCTTCGTGCACA 59.379 47.619 18.64 0.81 0.00 4.57
472 473 2.037902 TGGTCTAATCCTTCGTGCACAA 59.962 45.455 18.64 9.39 0.00 3.33
473 474 2.673368 GGTCTAATCCTTCGTGCACAAG 59.327 50.000 18.64 17.71 0.00 3.16
474 475 3.326747 GTCTAATCCTTCGTGCACAAGT 58.673 45.455 18.64 6.73 0.00 3.16
475 476 4.491676 GTCTAATCCTTCGTGCACAAGTA 58.508 43.478 18.64 7.16 0.00 2.24
476 477 4.927425 GTCTAATCCTTCGTGCACAAGTAA 59.073 41.667 18.64 9.89 0.00 2.24
477 478 5.407387 GTCTAATCCTTCGTGCACAAGTAAA 59.593 40.000 18.64 7.75 0.00 2.01
478 479 4.483476 AATCCTTCGTGCACAAGTAAAC 57.517 40.909 18.64 0.00 0.00 2.01
479 480 2.907634 TCCTTCGTGCACAAGTAAACA 58.092 42.857 18.64 0.00 0.00 2.83
480 481 2.869801 TCCTTCGTGCACAAGTAAACAG 59.130 45.455 18.64 6.13 0.00 3.16
481 482 2.869801 CCTTCGTGCACAAGTAAACAGA 59.130 45.455 18.64 0.00 0.00 3.41
482 483 3.498397 CCTTCGTGCACAAGTAAACAGAT 59.502 43.478 18.64 0.00 0.00 2.90
483 484 4.688879 CCTTCGTGCACAAGTAAACAGATA 59.311 41.667 18.64 0.00 0.00 1.98
484 485 5.351465 CCTTCGTGCACAAGTAAACAGATAT 59.649 40.000 18.64 0.00 0.00 1.63
485 486 6.128282 CCTTCGTGCACAAGTAAACAGATATT 60.128 38.462 18.64 0.00 0.00 1.28
486 487 6.795098 TCGTGCACAAGTAAACAGATATTT 57.205 33.333 18.64 0.00 0.00 1.40
487 488 6.598525 TCGTGCACAAGTAAACAGATATTTG 58.401 36.000 18.64 0.00 0.00 2.32
488 489 6.425417 TCGTGCACAAGTAAACAGATATTTGA 59.575 34.615 18.64 0.00 0.00 2.69
489 490 7.119116 TCGTGCACAAGTAAACAGATATTTGAT 59.881 33.333 18.64 0.00 0.00 2.57
490 491 7.216881 CGTGCACAAGTAAACAGATATTTGATG 59.783 37.037 18.64 0.00 0.00 3.07
491 492 7.008628 GTGCACAAGTAAACAGATATTTGATGC 59.991 37.037 13.17 0.00 34.35 3.91
492 493 7.028962 GCACAAGTAAACAGATATTTGATGCA 58.971 34.615 0.00 0.00 34.17 3.96
493 494 7.703621 GCACAAGTAAACAGATATTTGATGCAT 59.296 33.333 0.00 0.00 34.17 3.96
494 495 9.016623 CACAAGTAAACAGATATTTGATGCATG 57.983 33.333 2.46 0.00 0.00 4.06
495 496 7.703621 ACAAGTAAACAGATATTTGATGCATGC 59.296 33.333 11.82 11.82 0.00 4.06
496 497 6.742109 AGTAAACAGATATTTGATGCATGCC 58.258 36.000 16.68 0.28 0.00 4.40
497 498 4.595762 AACAGATATTTGATGCATGCCC 57.404 40.909 16.68 7.77 0.00 5.36
498 499 3.568443 ACAGATATTTGATGCATGCCCA 58.432 40.909 16.68 10.59 0.00 5.36
499 500 4.157246 ACAGATATTTGATGCATGCCCAT 58.843 39.130 16.68 2.03 0.00 4.00
500 501 4.021456 ACAGATATTTGATGCATGCCCATG 60.021 41.667 16.68 9.46 41.60 3.66
501 502 4.021456 CAGATATTTGATGCATGCCCATGT 60.021 41.667 16.68 7.49 40.80 3.21
502 503 4.591498 AGATATTTGATGCATGCCCATGTT 59.409 37.500 16.68 0.00 40.80 2.71
503 504 2.388310 TTTGATGCATGCCCATGTTG 57.612 45.000 16.68 0.00 40.80 3.33
504 505 1.558233 TTGATGCATGCCCATGTTGA 58.442 45.000 16.68 0.00 40.80 3.18
505 506 1.558233 TGATGCATGCCCATGTTGAA 58.442 45.000 16.68 0.00 40.80 2.69
506 507 2.112190 TGATGCATGCCCATGTTGAAT 58.888 42.857 16.68 0.00 40.80 2.57
507 508 2.502130 TGATGCATGCCCATGTTGAATT 59.498 40.909 16.68 0.00 40.80 2.17
508 509 3.055021 TGATGCATGCCCATGTTGAATTT 60.055 39.130 16.68 0.00 40.80 1.82
509 510 4.161754 TGATGCATGCCCATGTTGAATTTA 59.838 37.500 16.68 0.00 40.80 1.40
510 511 4.126208 TGCATGCCCATGTTGAATTTAG 57.874 40.909 16.68 0.00 40.80 1.85
511 512 2.867975 GCATGCCCATGTTGAATTTAGC 59.132 45.455 6.36 0.00 40.80 3.09
512 513 3.460103 CATGCCCATGTTGAATTTAGCC 58.540 45.455 0.13 0.00 34.23 3.93
513 514 1.830477 TGCCCATGTTGAATTTAGCCC 59.170 47.619 0.00 0.00 0.00 5.19
514 515 1.202405 GCCCATGTTGAATTTAGCCCG 60.202 52.381 0.00 0.00 0.00 6.13
515 516 1.202405 CCCATGTTGAATTTAGCCCGC 60.202 52.381 0.00 0.00 0.00 6.13
516 517 1.750778 CCATGTTGAATTTAGCCCGCT 59.249 47.619 0.00 0.00 0.00 5.52
517 518 2.948979 CCATGTTGAATTTAGCCCGCTA 59.051 45.455 0.00 0.00 0.00 4.26
518 519 3.003689 CCATGTTGAATTTAGCCCGCTAG 59.996 47.826 0.00 0.00 0.00 3.42
519 520 3.620427 TGTTGAATTTAGCCCGCTAGA 57.380 42.857 0.00 0.00 0.00 2.43
520 521 4.150897 TGTTGAATTTAGCCCGCTAGAT 57.849 40.909 0.00 0.00 0.00 1.98
521 522 4.127171 TGTTGAATTTAGCCCGCTAGATC 58.873 43.478 0.00 0.83 0.00 2.75
522 523 3.026630 TGAATTTAGCCCGCTAGATCG 57.973 47.619 0.00 0.00 0.00 3.69
523 524 2.626266 TGAATTTAGCCCGCTAGATCGA 59.374 45.455 0.00 0.00 0.00 3.59
524 525 3.258372 TGAATTTAGCCCGCTAGATCGAT 59.742 43.478 0.00 0.00 0.00 3.59
525 526 3.963428 ATTTAGCCCGCTAGATCGATT 57.037 42.857 0.00 0.00 0.00 3.34
526 527 3.299340 TTTAGCCCGCTAGATCGATTC 57.701 47.619 0.00 0.00 0.00 2.52
527 528 1.905637 TAGCCCGCTAGATCGATTCA 58.094 50.000 0.00 0.00 0.00 2.57
528 529 0.315568 AGCCCGCTAGATCGATTCAC 59.684 55.000 0.00 0.00 0.00 3.18
529 530 0.667792 GCCCGCTAGATCGATTCACC 60.668 60.000 0.00 0.00 0.00 4.02
530 531 0.038159 CCCGCTAGATCGATTCACCC 60.038 60.000 0.00 0.00 0.00 4.61
531 532 0.038159 CCGCTAGATCGATTCACCCC 60.038 60.000 0.00 0.00 0.00 4.95
532 533 0.673985 CGCTAGATCGATTCACCCCA 59.326 55.000 0.00 0.00 0.00 4.96
533 534 1.336332 CGCTAGATCGATTCACCCCAG 60.336 57.143 0.00 0.00 0.00 4.45
534 535 1.964223 GCTAGATCGATTCACCCCAGA 59.036 52.381 0.00 0.00 0.00 3.86
535 536 2.029470 GCTAGATCGATTCACCCCAGAG 60.029 54.545 0.00 0.00 0.00 3.35
536 537 0.755686 AGATCGATTCACCCCAGAGC 59.244 55.000 0.00 0.00 0.00 4.09
537 538 0.755686 GATCGATTCACCCCAGAGCT 59.244 55.000 0.00 0.00 0.00 4.09
538 539 1.964223 GATCGATTCACCCCAGAGCTA 59.036 52.381 0.00 0.00 0.00 3.32
539 540 2.088104 TCGATTCACCCCAGAGCTAT 57.912 50.000 0.00 0.00 0.00 2.97
540 541 3.238788 TCGATTCACCCCAGAGCTATA 57.761 47.619 0.00 0.00 0.00 1.31
541 542 2.891580 TCGATTCACCCCAGAGCTATAC 59.108 50.000 0.00 0.00 0.00 1.47
542 543 2.628178 CGATTCACCCCAGAGCTATACA 59.372 50.000 0.00 0.00 0.00 2.29
543 544 3.259374 CGATTCACCCCAGAGCTATACAT 59.741 47.826 0.00 0.00 0.00 2.29
544 545 4.573900 GATTCACCCCAGAGCTATACATG 58.426 47.826 0.00 0.00 0.00 3.21
545 546 3.046283 TCACCCCAGAGCTATACATGT 57.954 47.619 2.69 2.69 0.00 3.21
546 547 4.193240 TCACCCCAGAGCTATACATGTA 57.807 45.455 8.27 8.27 0.00 2.29
547 548 4.752063 TCACCCCAGAGCTATACATGTAT 58.248 43.478 21.57 21.57 0.00 2.29
548 549 5.899278 TCACCCCAGAGCTATACATGTATA 58.101 41.667 21.50 21.50 0.00 1.47
549 550 6.319715 TCACCCCAGAGCTATACATGTATAA 58.680 40.000 22.67 9.89 0.00 0.98
550 551 6.437477 TCACCCCAGAGCTATACATGTATAAG 59.563 42.308 22.67 17.59 0.00 1.73
551 552 6.211584 CACCCCAGAGCTATACATGTATAAGT 59.788 42.308 22.67 14.38 0.00 2.24
552 553 6.211584 ACCCCAGAGCTATACATGTATAAGTG 59.788 42.308 22.67 16.76 0.00 3.16
553 554 6.102663 CCCAGAGCTATACATGTATAAGTGC 58.897 44.000 22.67 21.30 0.00 4.40
554 555 6.295292 CCCAGAGCTATACATGTATAAGTGCA 60.295 42.308 25.52 9.79 0.00 4.57
555 556 6.810676 CCAGAGCTATACATGTATAAGTGCAG 59.189 42.308 25.52 17.26 0.00 4.41
556 557 6.810676 CAGAGCTATACATGTATAAGTGCAGG 59.189 42.308 25.52 15.38 0.00 4.85
557 558 6.721668 AGAGCTATACATGTATAAGTGCAGGA 59.278 38.462 25.52 8.12 0.00 3.86
558 559 7.398618 AGAGCTATACATGTATAAGTGCAGGAT 59.601 37.037 25.52 14.01 0.00 3.24
559 560 8.595362 AGCTATACATGTATAAGTGCAGGATA 57.405 34.615 25.52 7.16 0.00 2.59
560 561 8.690884 AGCTATACATGTATAAGTGCAGGATAG 58.309 37.037 25.52 14.78 0.00 2.08
561 562 7.436673 GCTATACATGTATAAGTGCAGGATAGC 59.563 40.741 22.67 16.56 34.53 2.97
562 563 4.899502 ACATGTATAAGTGCAGGATAGCC 58.100 43.478 0.00 0.00 0.00 3.93
564 565 5.780282 ACATGTATAAGTGCAGGATAGCCTA 59.220 40.000 0.00 0.00 44.80 3.93
565 566 6.270000 ACATGTATAAGTGCAGGATAGCCTAA 59.730 38.462 0.00 0.00 44.80 2.69
566 567 6.346477 TGTATAAGTGCAGGATAGCCTAAG 57.654 41.667 0.00 0.00 44.80 2.18
567 568 6.075315 TGTATAAGTGCAGGATAGCCTAAGA 58.925 40.000 0.00 0.00 44.80 2.10
568 569 6.553476 TGTATAAGTGCAGGATAGCCTAAGAA 59.447 38.462 0.00 0.00 44.80 2.52
569 570 4.844349 AAGTGCAGGATAGCCTAAGAAA 57.156 40.909 0.00 0.00 44.80 2.52
570 571 4.414337 AGTGCAGGATAGCCTAAGAAAG 57.586 45.455 0.00 0.00 44.80 2.62
571 572 2.875317 GTGCAGGATAGCCTAAGAAAGC 59.125 50.000 0.00 0.00 44.80 3.51
572 573 2.774234 TGCAGGATAGCCTAAGAAAGCT 59.226 45.455 0.00 0.00 44.80 3.74
573 574 3.967326 TGCAGGATAGCCTAAGAAAGCTA 59.033 43.478 0.00 0.00 44.80 3.32
574 575 4.039730 TGCAGGATAGCCTAAGAAAGCTAG 59.960 45.833 0.00 0.00 44.80 3.42
575 576 4.565022 CAGGATAGCCTAAGAAAGCTAGC 58.435 47.826 6.62 6.62 44.80 3.42
578 579 4.950050 GATAGCCTAAGAAAGCTAGCACA 58.050 43.478 18.83 0.00 45.13 4.57
579 580 2.979240 AGCCTAAGAAAGCTAGCACAC 58.021 47.619 18.83 7.21 37.64 3.82
580 581 2.303022 AGCCTAAGAAAGCTAGCACACA 59.697 45.455 18.83 0.00 37.64 3.72
581 582 2.675348 GCCTAAGAAAGCTAGCACACAG 59.325 50.000 18.83 5.85 0.00 3.66
582 583 3.265791 CCTAAGAAAGCTAGCACACAGG 58.734 50.000 18.83 11.13 0.00 4.00
583 584 3.055819 CCTAAGAAAGCTAGCACACAGGA 60.056 47.826 18.83 0.00 0.00 3.86
584 585 2.464157 AGAAAGCTAGCACACAGGAC 57.536 50.000 18.83 0.00 0.00 3.85
585 586 1.694150 AGAAAGCTAGCACACAGGACA 59.306 47.619 18.83 0.00 0.00 4.02
586 587 2.304180 AGAAAGCTAGCACACAGGACAT 59.696 45.455 18.83 0.00 0.00 3.06
587 588 2.393271 AAGCTAGCACACAGGACATC 57.607 50.000 18.83 0.00 0.00 3.06
588 589 0.539051 AGCTAGCACACAGGACATCC 59.461 55.000 18.83 0.00 0.00 3.51
589 590 0.250234 GCTAGCACACAGGACATCCA 59.750 55.000 10.63 0.00 38.89 3.41
590 591 1.134280 GCTAGCACACAGGACATCCAT 60.134 52.381 10.63 0.00 38.89 3.41
591 592 2.831333 CTAGCACACAGGACATCCATC 58.169 52.381 0.00 0.00 38.89 3.51
592 593 0.107993 AGCACACAGGACATCCATCG 60.108 55.000 0.00 0.00 38.89 3.84
593 594 0.108186 GCACACAGGACATCCATCGA 60.108 55.000 0.00 0.00 38.89 3.59
594 595 1.473965 GCACACAGGACATCCATCGAT 60.474 52.381 0.00 0.00 38.89 3.59
604 605 3.359272 CATCCATCGATGTATTTCGCG 57.641 47.619 23.27 0.00 40.97 5.87
605 606 2.502213 TCCATCGATGTATTTCGCGT 57.498 45.000 23.27 0.00 38.97 6.01
606 607 2.816689 TCCATCGATGTATTTCGCGTT 58.183 42.857 23.27 0.00 38.97 4.84
607 608 3.191669 TCCATCGATGTATTTCGCGTTT 58.808 40.909 23.27 0.00 38.97 3.60
608 609 3.244345 TCCATCGATGTATTTCGCGTTTC 59.756 43.478 23.27 0.00 38.97 2.78
609 610 2.963451 TCGATGTATTTCGCGTTTCG 57.037 45.000 5.77 5.92 38.97 3.46
620 621 4.792125 CGTTTCGCCAAGACGTTC 57.208 55.556 0.00 0.00 32.52 3.95
621 622 1.203313 CGTTTCGCCAAGACGTTCC 59.797 57.895 0.00 0.00 32.52 3.62
622 623 1.203313 GTTTCGCCAAGACGTTCCG 59.797 57.895 0.00 0.00 0.00 4.30
623 624 2.600475 TTTCGCCAAGACGTTCCGC 61.600 57.895 0.00 0.00 0.00 5.54
624 625 2.981977 TTTCGCCAAGACGTTCCGCT 62.982 55.000 0.00 0.00 0.00 5.52
625 626 3.777925 CGCCAAGACGTTCCGCTG 61.778 66.667 0.00 0.00 0.00 5.18
626 627 2.357034 GCCAAGACGTTCCGCTGA 60.357 61.111 0.00 0.00 0.00 4.26
627 628 2.383527 GCCAAGACGTTCCGCTGAG 61.384 63.158 0.00 0.00 0.00 3.35
628 629 1.289066 CCAAGACGTTCCGCTGAGA 59.711 57.895 0.00 0.00 0.00 3.27
629 630 0.108615 CCAAGACGTTCCGCTGAGAT 60.109 55.000 0.00 0.00 0.00 2.75
630 631 1.272781 CAAGACGTTCCGCTGAGATC 58.727 55.000 0.00 0.00 0.00 2.75
631 632 0.888619 AAGACGTTCCGCTGAGATCA 59.111 50.000 0.00 0.00 0.00 2.92
632 633 0.888619 AGACGTTCCGCTGAGATCAA 59.111 50.000 0.00 0.00 0.00 2.57
633 634 1.478510 AGACGTTCCGCTGAGATCAAT 59.521 47.619 0.00 0.00 0.00 2.57
634 635 1.855360 GACGTTCCGCTGAGATCAATC 59.145 52.381 0.00 0.00 0.00 2.67
635 636 1.212616 CGTTCCGCTGAGATCAATCC 58.787 55.000 0.00 0.00 0.00 3.01
636 637 1.212616 GTTCCGCTGAGATCAATCCG 58.787 55.000 0.00 0.00 0.00 4.18
637 638 1.111277 TTCCGCTGAGATCAATCCGA 58.889 50.000 0.00 0.00 0.00 4.55
638 639 1.332195 TCCGCTGAGATCAATCCGAT 58.668 50.000 0.00 0.00 36.91 4.18
647 648 2.600731 GATCAATCCGATCGTAGCAGG 58.399 52.381 15.09 0.00 41.24 4.85
648 649 0.032130 TCAATCCGATCGTAGCAGGC 59.968 55.000 15.09 0.00 0.00 4.85
649 650 0.946221 CAATCCGATCGTAGCAGGCC 60.946 60.000 15.09 0.00 0.00 5.19
650 651 2.421877 AATCCGATCGTAGCAGGCCG 62.422 60.000 15.09 0.00 0.00 6.13
651 652 3.592814 CCGATCGTAGCAGGCCGA 61.593 66.667 15.09 0.00 37.51 5.54
652 653 2.411701 CGATCGTAGCAGGCCGAA 59.588 61.111 7.03 0.00 36.57 4.30
653 654 1.658717 CGATCGTAGCAGGCCGAAG 60.659 63.158 7.03 0.00 36.57 3.79
654 655 1.951631 GATCGTAGCAGGCCGAAGC 60.952 63.158 9.49 9.49 36.57 3.86
655 656 3.774959 ATCGTAGCAGGCCGAAGCG 62.775 63.158 11.35 7.63 41.24 4.68
656 657 4.492160 CGTAGCAGGCCGAAGCGA 62.492 66.667 11.35 4.65 41.24 4.93
657 658 2.583593 GTAGCAGGCCGAAGCGAG 60.584 66.667 11.35 0.00 41.24 5.03
658 659 2.754254 TAGCAGGCCGAAGCGAGA 60.754 61.111 11.35 0.47 41.24 4.04
659 660 2.127869 TAGCAGGCCGAAGCGAGAT 61.128 57.895 11.35 0.00 41.24 2.75
660 661 2.076622 TAGCAGGCCGAAGCGAGATC 62.077 60.000 11.35 0.00 41.24 2.75
661 662 2.496341 CAGGCCGAAGCGAGATCA 59.504 61.111 0.00 0.00 41.24 2.92
662 663 1.068753 CAGGCCGAAGCGAGATCAT 59.931 57.895 0.00 0.00 41.24 2.45
663 664 1.068753 AGGCCGAAGCGAGATCATG 59.931 57.895 0.00 0.00 41.24 3.07
664 665 1.227380 GGCCGAAGCGAGATCATGT 60.227 57.895 0.00 0.00 41.24 3.21
665 666 0.032130 GGCCGAAGCGAGATCATGTA 59.968 55.000 0.00 0.00 41.24 2.29
666 667 1.132588 GCCGAAGCGAGATCATGTAC 58.867 55.000 0.00 0.00 0.00 2.90
667 668 1.399572 CCGAAGCGAGATCATGTACG 58.600 55.000 0.00 0.00 0.00 3.67
668 669 1.268589 CCGAAGCGAGATCATGTACGT 60.269 52.381 0.00 0.00 0.00 3.57
669 670 2.032290 CCGAAGCGAGATCATGTACGTA 60.032 50.000 0.00 0.00 0.00 3.57
670 671 2.965414 CGAAGCGAGATCATGTACGTAC 59.035 50.000 18.90 18.90 0.00 3.67
671 672 2.665056 AGCGAGATCATGTACGTACG 57.335 50.000 20.18 15.01 0.00 3.67
672 673 1.043224 GCGAGATCATGTACGTACGC 58.957 55.000 20.18 13.34 38.23 4.42
673 674 1.333881 GCGAGATCATGTACGTACGCT 60.334 52.381 20.18 11.81 41.25 5.07
674 675 2.853662 GCGAGATCATGTACGTACGCTT 60.854 50.000 20.18 5.59 41.25 4.68
675 676 3.605461 GCGAGATCATGTACGTACGCTTA 60.605 47.826 20.18 3.57 41.25 3.09
676 677 3.898946 CGAGATCATGTACGTACGCTTAC 59.101 47.826 20.18 11.94 0.00 2.34
677 678 4.551410 CGAGATCATGTACGTACGCTTACA 60.551 45.833 20.18 17.32 34.54 2.41
678 679 4.595116 AGATCATGTACGTACGCTTACAC 58.405 43.478 20.18 6.41 33.17 2.90
679 680 3.828060 TCATGTACGTACGCTTACACA 57.172 42.857 20.18 11.87 33.17 3.72
680 681 3.750512 TCATGTACGTACGCTTACACAG 58.249 45.455 20.18 13.06 33.17 3.66
681 682 1.967762 TGTACGTACGCTTACACAGC 58.032 50.000 20.18 0.00 46.31 4.40
689 690 2.918571 GCTTACACAGCTGCAGACA 58.081 52.632 20.43 0.00 46.27 3.41
690 691 1.446907 GCTTACACAGCTGCAGACAT 58.553 50.000 20.43 0.00 46.27 3.06
691 692 2.621338 GCTTACACAGCTGCAGACATA 58.379 47.619 20.43 0.00 46.27 2.29
692 693 2.349886 GCTTACACAGCTGCAGACATAC 59.650 50.000 20.43 0.00 46.27 2.39
693 694 2.672961 TACACAGCTGCAGACATACC 57.327 50.000 20.43 0.00 0.00 2.73
694 695 0.979665 ACACAGCTGCAGACATACCT 59.020 50.000 20.43 0.00 0.00 3.08
695 696 2.179427 ACACAGCTGCAGACATACCTA 58.821 47.619 20.43 0.00 0.00 3.08
696 697 2.093973 ACACAGCTGCAGACATACCTAC 60.094 50.000 20.43 0.00 0.00 3.18
697 698 2.094026 CACAGCTGCAGACATACCTACA 60.094 50.000 20.43 0.00 0.00 2.74
698 699 2.768527 ACAGCTGCAGACATACCTACAT 59.231 45.455 20.43 0.00 0.00 2.29
699 700 3.960755 ACAGCTGCAGACATACCTACATA 59.039 43.478 20.43 0.00 0.00 2.29
700 701 4.590647 ACAGCTGCAGACATACCTACATAT 59.409 41.667 20.43 0.00 0.00 1.78
701 702 4.928020 CAGCTGCAGACATACCTACATATG 59.072 45.833 20.43 0.00 38.34 1.78
702 703 4.590647 AGCTGCAGACATACCTACATATGT 59.409 41.667 20.43 13.93 46.25 2.29
703 704 5.775195 AGCTGCAGACATACCTACATATGTA 59.225 40.000 20.43 14.75 44.14 2.29
704 705 5.864474 GCTGCAGACATACCTACATATGTAC 59.136 44.000 20.43 0.76 44.14 2.90
705 706 6.294787 GCTGCAGACATACCTACATATGTACT 60.295 42.308 20.43 3.08 44.14 2.73
706 707 6.981722 TGCAGACATACCTACATATGTACTG 58.018 40.000 11.62 14.97 44.14 2.74
707 708 6.015434 TGCAGACATACCTACATATGTACTGG 60.015 42.308 20.32 18.41 44.14 4.00
708 709 6.208797 GCAGACATACCTACATATGTACTGGA 59.791 42.308 21.93 10.47 44.14 3.86
709 710 7.594714 CAGACATACCTACATATGTACTGGAC 58.405 42.308 21.93 11.54 44.14 4.02
710 711 7.448777 CAGACATACCTACATATGTACTGGACT 59.551 40.741 21.93 12.91 44.14 3.85
711 712 8.005388 AGACATACCTACATATGTACTGGACTT 58.995 37.037 21.93 7.67 44.14 3.01
712 713 9.293404 GACATACCTACATATGTACTGGACTTA 57.707 37.037 21.93 9.19 44.14 2.24
713 714 9.298250 ACATACCTACATATGTACTGGACTTAG 57.702 37.037 21.93 8.36 42.68 2.18
714 715 9.516546 CATACCTACATATGTACTGGACTTAGA 57.483 37.037 21.93 0.00 0.00 2.10
729 730 8.897752 ACTGGACTTAGATAAAATCAATCAAGC 58.102 33.333 0.00 0.00 0.00 4.01
730 731 8.806429 TGGACTTAGATAAAATCAATCAAGCA 57.194 30.769 0.00 0.00 0.00 3.91
731 732 8.896744 TGGACTTAGATAAAATCAATCAAGCAG 58.103 33.333 0.00 0.00 0.00 4.24
732 733 7.859875 GGACTTAGATAAAATCAATCAAGCAGC 59.140 37.037 0.00 0.00 0.00 5.25
733 734 7.710896 ACTTAGATAAAATCAATCAAGCAGCC 58.289 34.615 0.00 0.00 0.00 4.85
734 735 7.559170 ACTTAGATAAAATCAATCAAGCAGCCT 59.441 33.333 0.00 0.00 0.00 4.58
735 736 6.786967 AGATAAAATCAATCAAGCAGCCTT 57.213 33.333 0.00 0.00 0.00 4.35
736 737 6.803642 AGATAAAATCAATCAAGCAGCCTTC 58.196 36.000 0.00 0.00 0.00 3.46
737 738 3.881937 AAATCAATCAAGCAGCCTTCC 57.118 42.857 0.00 0.00 0.00 3.46
738 739 2.822707 ATCAATCAAGCAGCCTTCCT 57.177 45.000 0.00 0.00 0.00 3.36
739 740 3.939740 ATCAATCAAGCAGCCTTCCTA 57.060 42.857 0.00 0.00 0.00 2.94
740 741 2.991250 TCAATCAAGCAGCCTTCCTAC 58.009 47.619 0.00 0.00 0.00 3.18
741 742 2.019984 CAATCAAGCAGCCTTCCTACC 58.980 52.381 0.00 0.00 0.00 3.18
742 743 0.548510 ATCAAGCAGCCTTCCTACCC 59.451 55.000 0.00 0.00 0.00 3.69
743 744 1.450312 CAAGCAGCCTTCCTACCCG 60.450 63.158 0.00 0.00 0.00 5.28
744 745 3.330992 AAGCAGCCTTCCTACCCGC 62.331 63.158 0.00 0.00 0.00 6.13
745 746 3.787001 GCAGCCTTCCTACCCGCT 61.787 66.667 0.00 0.00 0.00 5.52
746 747 2.990479 CAGCCTTCCTACCCGCTT 59.010 61.111 0.00 0.00 0.00 4.68
747 748 1.450312 CAGCCTTCCTACCCGCTTG 60.450 63.158 0.00 0.00 0.00 4.01
748 749 2.824489 GCCTTCCTACCCGCTTGC 60.824 66.667 0.00 0.00 0.00 4.01
749 750 2.990479 CCTTCCTACCCGCTTGCT 59.010 61.111 0.00 0.00 0.00 3.91
750 751 1.968050 GCCTTCCTACCCGCTTGCTA 61.968 60.000 0.00 0.00 0.00 3.49
751 752 0.759346 CCTTCCTACCCGCTTGCTAT 59.241 55.000 0.00 0.00 0.00 2.97
752 753 1.968493 CCTTCCTACCCGCTTGCTATA 59.032 52.381 0.00 0.00 0.00 1.31
753 754 2.288886 CCTTCCTACCCGCTTGCTATAC 60.289 54.545 0.00 0.00 0.00 1.47
754 755 2.376695 TCCTACCCGCTTGCTATACT 57.623 50.000 0.00 0.00 0.00 2.12
755 756 2.674420 TCCTACCCGCTTGCTATACTT 58.326 47.619 0.00 0.00 0.00 2.24
756 757 3.036091 TCCTACCCGCTTGCTATACTTT 58.964 45.455 0.00 0.00 0.00 2.66
757 758 4.217510 TCCTACCCGCTTGCTATACTTTA 58.782 43.478 0.00 0.00 0.00 1.85
758 759 4.280174 TCCTACCCGCTTGCTATACTTTAG 59.720 45.833 0.00 0.00 0.00 1.85
759 760 4.280174 CCTACCCGCTTGCTATACTTTAGA 59.720 45.833 0.00 0.00 0.00 2.10
760 761 4.748277 ACCCGCTTGCTATACTTTAGAA 57.252 40.909 0.00 0.00 0.00 2.10
761 762 5.291905 ACCCGCTTGCTATACTTTAGAAT 57.708 39.130 0.00 0.00 0.00 2.40
762 763 5.057149 ACCCGCTTGCTATACTTTAGAATG 58.943 41.667 0.00 0.00 0.00 2.67
763 764 5.057149 CCCGCTTGCTATACTTTAGAATGT 58.943 41.667 0.00 0.00 0.00 2.71
764 765 5.527582 CCCGCTTGCTATACTTTAGAATGTT 59.472 40.000 0.00 0.00 0.00 2.71
765 766 6.704493 CCCGCTTGCTATACTTTAGAATGTTA 59.296 38.462 0.00 0.00 0.00 2.41
766 767 7.095607 CCCGCTTGCTATACTTTAGAATGTTAG 60.096 40.741 0.00 0.00 0.00 2.34
767 768 7.438459 CCGCTTGCTATACTTTAGAATGTTAGT 59.562 37.037 0.00 0.00 0.00 2.24
768 769 9.459640 CGCTTGCTATACTTTAGAATGTTAGTA 57.540 33.333 0.00 0.00 0.00 1.82
2816 3964 7.567250 TCCAGGTTATATGGTTCACATTCTCTA 59.433 37.037 0.00 0.00 41.03 2.43
2866 4014 3.394719 TGGGCCTTGCGTTTTTAAATTC 58.605 40.909 4.53 0.00 0.00 2.17
2867 4015 3.181465 TGGGCCTTGCGTTTTTAAATTCA 60.181 39.130 4.53 0.00 0.00 2.57
2868 4016 3.185594 GGGCCTTGCGTTTTTAAATTCAC 59.814 43.478 0.84 0.00 0.00 3.18
2869 4017 3.804873 GGCCTTGCGTTTTTAAATTCACA 59.195 39.130 0.00 0.00 0.00 3.58
2870 4018 4.271291 GGCCTTGCGTTTTTAAATTCACAA 59.729 37.500 0.00 0.00 0.00 3.33
2871 4019 5.049749 GGCCTTGCGTTTTTAAATTCACAAT 60.050 36.000 0.00 0.00 0.00 2.71
2872 4020 5.845433 GCCTTGCGTTTTTAAATTCACAATG 59.155 36.000 0.00 0.00 0.00 2.82
2873 4021 6.292596 GCCTTGCGTTTTTAAATTCACAATGA 60.293 34.615 0.00 0.00 0.00 2.57
2874 4022 7.062848 CCTTGCGTTTTTAAATTCACAATGAC 58.937 34.615 0.00 0.00 0.00 3.06
2875 4023 6.517914 TGCGTTTTTAAATTCACAATGACC 57.482 33.333 0.00 0.00 0.00 4.02
2876 4024 6.042777 TGCGTTTTTAAATTCACAATGACCA 58.957 32.000 0.00 0.00 0.00 4.02
2877 4025 6.703607 TGCGTTTTTAAATTCACAATGACCAT 59.296 30.769 0.00 0.00 0.00 3.55
2878 4026 7.225538 TGCGTTTTTAAATTCACAATGACCATT 59.774 29.630 0.00 0.00 0.00 3.16
2879 4027 7.739911 GCGTTTTTAAATTCACAATGACCATTC 59.260 33.333 0.00 0.00 0.00 2.67
2880 4028 8.220434 CGTTTTTAAATTCACAATGACCATTCC 58.780 33.333 0.00 0.00 0.00 3.01
2881 4029 9.050601 GTTTTTAAATTCACAATGACCATTCCA 57.949 29.630 0.00 0.00 0.00 3.53
2882 4030 8.830201 TTTTAAATTCACAATGACCATTCCAG 57.170 30.769 0.00 0.00 0.00 3.86
2883 4031 5.410355 AAATTCACAATGACCATTCCAGG 57.590 39.130 0.00 0.00 0.00 4.45
2884 4032 3.524095 TTCACAATGACCATTCCAGGT 57.476 42.857 0.00 0.00 46.82 4.00
2885 4033 3.524095 TCACAATGACCATTCCAGGTT 57.476 42.857 0.00 0.00 43.38 3.50
2886 4034 4.649267 TCACAATGACCATTCCAGGTTA 57.351 40.909 0.00 0.00 43.38 2.85
2887 4035 5.191727 TCACAATGACCATTCCAGGTTAT 57.808 39.130 0.00 0.00 43.38 1.89
2888 4036 6.320434 TCACAATGACCATTCCAGGTTATA 57.680 37.500 0.00 0.00 43.38 0.98
2889 4037 6.910191 TCACAATGACCATTCCAGGTTATAT 58.090 36.000 0.00 0.00 43.38 0.86
2890 4038 6.772233 TCACAATGACCATTCCAGGTTATATG 59.228 38.462 0.00 0.00 43.38 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
203 204 9.825972 TTGTTTCTCTAAAATTAATCGAAGCAG 57.174 29.630 0.00 0.00 0.00 4.24
204 205 9.607285 GTTGTTTCTCTAAAATTAATCGAAGCA 57.393 29.630 0.00 0.00 0.00 3.91
205 206 9.607285 TGTTGTTTCTCTAAAATTAATCGAAGC 57.393 29.630 0.00 0.00 0.00 3.86
220 221 8.943002 CCTACGGTTATTTATTGTTGTTTCTCT 58.057 33.333 0.00 0.00 0.00 3.10
221 222 8.938906 TCCTACGGTTATTTATTGTTGTTTCTC 58.061 33.333 0.00 0.00 0.00 2.87
222 223 8.851541 TCCTACGGTTATTTATTGTTGTTTCT 57.148 30.769 0.00 0.00 0.00 2.52
224 225 9.849166 CAATCCTACGGTTATTTATTGTTGTTT 57.151 29.630 0.00 0.00 0.00 2.83
225 226 9.016438 ACAATCCTACGGTTATTTATTGTTGTT 57.984 29.630 0.00 0.00 33.54 2.83
226 227 8.570068 ACAATCCTACGGTTATTTATTGTTGT 57.430 30.769 0.00 0.00 33.54 3.32
227 228 9.849166 AAACAATCCTACGGTTATTTATTGTTG 57.151 29.630 10.29 0.00 42.24 3.33
237 238 9.480053 GCAGTATATTAAACAATCCTACGGTTA 57.520 33.333 0.00 0.00 0.00 2.85
238 239 8.208903 AGCAGTATATTAAACAATCCTACGGTT 58.791 33.333 0.00 0.00 0.00 4.44
239 240 7.732996 AGCAGTATATTAAACAATCCTACGGT 58.267 34.615 0.00 0.00 0.00 4.83
240 241 9.136952 GTAGCAGTATATTAAACAATCCTACGG 57.863 37.037 0.00 0.00 0.00 4.02
241 242 8.847567 CGTAGCAGTATATTAAACAATCCTACG 58.152 37.037 0.00 0.00 37.82 3.51
242 243 9.903682 TCGTAGCAGTATATTAAACAATCCTAC 57.096 33.333 0.00 0.00 0.00 3.18
244 245 9.998106 AATCGTAGCAGTATATTAAACAATCCT 57.002 29.630 0.00 0.00 0.00 3.24
258 259 9.695526 TCTAGTTTTGTTTTAATCGTAGCAGTA 57.304 29.630 0.00 0.00 0.00 2.74
259 260 8.597662 TCTAGTTTTGTTTTAATCGTAGCAGT 57.402 30.769 0.00 0.00 0.00 4.40
260 261 9.478019 CATCTAGTTTTGTTTTAATCGTAGCAG 57.522 33.333 0.00 0.00 0.00 4.24
261 262 8.995220 ACATCTAGTTTTGTTTTAATCGTAGCA 58.005 29.630 0.00 0.00 0.00 3.49
262 263 9.821662 AACATCTAGTTTTGTTTTAATCGTAGC 57.178 29.630 0.00 0.00 37.03 3.58
283 284 9.482627 CCTCATAGGACTCTTATGTAAAACATC 57.517 37.037 7.78 0.00 37.53 3.06
284 285 8.993424 ACCTCATAGGACTCTTATGTAAAACAT 58.007 33.333 7.78 0.00 39.05 2.71
285 286 8.375493 ACCTCATAGGACTCTTATGTAAAACA 57.625 34.615 7.78 0.00 37.67 2.83
288 289 8.627403 CGTAACCTCATAGGACTCTTATGTAAA 58.373 37.037 7.78 0.00 37.67 2.01
289 290 7.255381 GCGTAACCTCATAGGACTCTTATGTAA 60.255 40.741 7.78 0.00 37.67 2.41
290 291 6.206243 GCGTAACCTCATAGGACTCTTATGTA 59.794 42.308 7.78 0.00 37.67 2.29
291 292 5.009811 GCGTAACCTCATAGGACTCTTATGT 59.990 44.000 7.78 0.00 37.67 2.29
292 293 5.009710 TGCGTAACCTCATAGGACTCTTATG 59.990 44.000 0.00 2.39 37.67 1.90
293 294 5.138276 TGCGTAACCTCATAGGACTCTTAT 58.862 41.667 0.00 0.00 37.67 1.73
294 295 4.529897 TGCGTAACCTCATAGGACTCTTA 58.470 43.478 0.00 0.00 37.67 2.10
295 296 3.362706 TGCGTAACCTCATAGGACTCTT 58.637 45.455 0.00 0.00 37.67 2.85
296 297 3.014304 TGCGTAACCTCATAGGACTCT 57.986 47.619 0.00 0.00 37.67 3.24
297 298 3.795623 TTGCGTAACCTCATAGGACTC 57.204 47.619 0.00 0.00 37.67 3.36
298 299 5.138276 TCTATTGCGTAACCTCATAGGACT 58.862 41.667 0.00 0.00 37.67 3.85
299 300 5.449107 TCTATTGCGTAACCTCATAGGAC 57.551 43.478 0.00 0.00 37.67 3.85
300 301 6.127281 TGTTTCTATTGCGTAACCTCATAGGA 60.127 38.462 0.00 0.00 37.67 2.94
301 302 6.046593 TGTTTCTATTGCGTAACCTCATAGG 58.953 40.000 0.00 0.00 42.49 2.57
302 303 6.201044 CCTGTTTCTATTGCGTAACCTCATAG 59.799 42.308 0.00 0.00 0.00 2.23
303 304 6.046593 CCTGTTTCTATTGCGTAACCTCATA 58.953 40.000 0.00 0.00 0.00 2.15
304 305 4.876107 CCTGTTTCTATTGCGTAACCTCAT 59.124 41.667 0.00 0.00 0.00 2.90
305 306 4.250464 CCTGTTTCTATTGCGTAACCTCA 58.750 43.478 0.00 0.00 0.00 3.86
306 307 4.251268 ACCTGTTTCTATTGCGTAACCTC 58.749 43.478 0.00 0.00 0.00 3.85
307 308 4.251268 GACCTGTTTCTATTGCGTAACCT 58.749 43.478 0.00 0.00 0.00 3.50
308 309 3.373130 GGACCTGTTTCTATTGCGTAACC 59.627 47.826 0.00 0.00 0.00 2.85
309 310 3.998341 TGGACCTGTTTCTATTGCGTAAC 59.002 43.478 0.00 0.00 0.00 2.50
310 311 4.274602 TGGACCTGTTTCTATTGCGTAA 57.725 40.909 0.00 0.00 0.00 3.18
311 312 3.965379 TGGACCTGTTTCTATTGCGTA 57.035 42.857 0.00 0.00 0.00 4.42
312 313 2.851263 TGGACCTGTTTCTATTGCGT 57.149 45.000 0.00 0.00 0.00 5.24
313 314 2.614057 GGATGGACCTGTTTCTATTGCG 59.386 50.000 0.00 0.00 35.41 4.85
314 315 2.614057 CGGATGGACCTGTTTCTATTGC 59.386 50.000 0.00 0.00 36.31 3.56
315 316 2.614057 GCGGATGGACCTGTTTCTATTG 59.386 50.000 0.00 0.00 36.31 1.90
316 317 2.238646 TGCGGATGGACCTGTTTCTATT 59.761 45.455 0.00 0.00 36.31 1.73
317 318 1.837439 TGCGGATGGACCTGTTTCTAT 59.163 47.619 0.00 0.00 36.31 1.98
318 319 1.271856 TGCGGATGGACCTGTTTCTA 58.728 50.000 0.00 0.00 36.31 2.10
319 320 0.400213 TTGCGGATGGACCTGTTTCT 59.600 50.000 0.00 0.00 36.31 2.52
320 321 0.804989 CTTGCGGATGGACCTGTTTC 59.195 55.000 0.00 0.00 36.31 2.78
321 322 0.110486 ACTTGCGGATGGACCTGTTT 59.890 50.000 0.00 0.00 36.31 2.83
322 323 0.321653 GACTTGCGGATGGACCTGTT 60.322 55.000 0.00 0.00 36.31 3.16
323 324 1.296715 GACTTGCGGATGGACCTGT 59.703 57.895 0.00 0.00 36.31 4.00
324 325 0.321564 TTGACTTGCGGATGGACCTG 60.322 55.000 0.00 0.00 36.31 4.00
325 326 0.321653 GTTGACTTGCGGATGGACCT 60.322 55.000 0.00 0.00 36.31 3.85
326 327 0.605319 TGTTGACTTGCGGATGGACC 60.605 55.000 0.00 0.00 0.00 4.46
327 328 0.798776 CTGTTGACTTGCGGATGGAC 59.201 55.000 0.00 0.00 0.00 4.02
328 329 0.684535 TCTGTTGACTTGCGGATGGA 59.315 50.000 0.00 0.00 0.00 3.41
329 330 1.522668 TTCTGTTGACTTGCGGATGG 58.477 50.000 0.00 0.00 0.00 3.51
330 331 3.624326 TTTTCTGTTGACTTGCGGATG 57.376 42.857 0.00 0.00 0.00 3.51
360 361 0.523072 GCCGTAACGTGTCTAGGACA 59.477 55.000 0.00 0.00 40.50 4.02
361 362 0.179153 GGCCGTAACGTGTCTAGGAC 60.179 60.000 0.00 0.00 0.00 3.85
362 363 1.647545 CGGCCGTAACGTGTCTAGGA 61.648 60.000 19.50 0.00 0.00 2.94
363 364 1.226491 CGGCCGTAACGTGTCTAGG 60.226 63.158 19.50 0.00 0.00 3.02
364 365 1.226491 CCGGCCGTAACGTGTCTAG 60.226 63.158 26.12 0.00 0.00 2.43
365 366 2.876955 CCGGCCGTAACGTGTCTA 59.123 61.111 26.12 0.00 0.00 2.59
366 367 4.729856 GCCGGCCGTAACGTGTCT 62.730 66.667 26.12 0.00 0.00 3.41
370 371 4.825252 GATGGCCGGCCGTAACGT 62.825 66.667 39.75 20.53 39.42 3.99
371 372 4.823419 TGATGGCCGGCCGTAACG 62.823 66.667 39.75 9.88 39.42 3.18
372 373 2.437002 TTGATGGCCGGCCGTAAC 60.437 61.111 39.75 27.82 39.42 2.50
373 374 2.124901 CTTGATGGCCGGCCGTAA 60.125 61.111 39.75 31.36 39.42 3.18
374 375 4.169696 CCTTGATGGCCGGCCGTA 62.170 66.667 39.75 24.97 39.42 4.02
376 377 4.794648 TTCCTTGATGGCCGGCCG 62.795 66.667 39.00 24.58 39.42 6.13
377 378 1.948721 CTTTTCCTTGATGGCCGGCC 61.949 60.000 39.40 39.40 35.26 6.13
378 379 1.512694 CTTTTCCTTGATGGCCGGC 59.487 57.895 21.18 21.18 35.26 6.13
379 380 1.250154 TGCTTTTCCTTGATGGCCGG 61.250 55.000 0.00 0.00 35.26 6.13
380 381 0.602562 TTGCTTTTCCTTGATGGCCG 59.397 50.000 0.00 0.00 35.26 6.13
381 382 4.470334 TTATTGCTTTTCCTTGATGGCC 57.530 40.909 0.00 0.00 35.26 5.36
382 383 8.491331 TTTATTTATTGCTTTTCCTTGATGGC 57.509 30.769 0.00 0.00 35.26 4.40
383 384 9.874205 TCTTTATTTATTGCTTTTCCTTGATGG 57.126 29.630 0.00 0.00 37.10 3.51
385 386 9.591792 GCTCTTTATTTATTGCTTTTCCTTGAT 57.408 29.630 0.00 0.00 0.00 2.57
386 387 8.034804 GGCTCTTTATTTATTGCTTTTCCTTGA 58.965 33.333 0.00 0.00 0.00 3.02
387 388 7.278646 GGGCTCTTTATTTATTGCTTTTCCTTG 59.721 37.037 0.00 0.00 0.00 3.61
388 389 7.331026 GGGCTCTTTATTTATTGCTTTTCCTT 58.669 34.615 0.00 0.00 0.00 3.36
389 390 6.127054 GGGGCTCTTTATTTATTGCTTTTCCT 60.127 38.462 0.00 0.00 0.00 3.36
390 391 6.049149 GGGGCTCTTTATTTATTGCTTTTCC 58.951 40.000 0.00 0.00 0.00 3.13
391 392 6.535150 GTGGGGCTCTTTATTTATTGCTTTTC 59.465 38.462 0.00 0.00 0.00 2.29
392 393 6.013812 TGTGGGGCTCTTTATTTATTGCTTTT 60.014 34.615 0.00 0.00 0.00 2.27
393 394 5.483583 TGTGGGGCTCTTTATTTATTGCTTT 59.516 36.000 0.00 0.00 0.00 3.51
394 395 5.022787 TGTGGGGCTCTTTATTTATTGCTT 58.977 37.500 0.00 0.00 0.00 3.91
395 396 4.402474 GTGTGGGGCTCTTTATTTATTGCT 59.598 41.667 0.00 0.00 0.00 3.91
396 397 4.441495 GGTGTGGGGCTCTTTATTTATTGC 60.441 45.833 0.00 0.00 0.00 3.56
397 398 4.709397 TGGTGTGGGGCTCTTTATTTATTG 59.291 41.667 0.00 0.00 0.00 1.90
398 399 4.941713 TGGTGTGGGGCTCTTTATTTATT 58.058 39.130 0.00 0.00 0.00 1.40
399 400 4.601406 TGGTGTGGGGCTCTTTATTTAT 57.399 40.909 0.00 0.00 0.00 1.40
400 401 4.083565 GTTGGTGTGGGGCTCTTTATTTA 58.916 43.478 0.00 0.00 0.00 1.40
401 402 2.897326 GTTGGTGTGGGGCTCTTTATTT 59.103 45.455 0.00 0.00 0.00 1.40
402 403 2.158385 TGTTGGTGTGGGGCTCTTTATT 60.158 45.455 0.00 0.00 0.00 1.40
403 404 1.427368 TGTTGGTGTGGGGCTCTTTAT 59.573 47.619 0.00 0.00 0.00 1.40
404 405 0.847373 TGTTGGTGTGGGGCTCTTTA 59.153 50.000 0.00 0.00 0.00 1.85
405 406 0.755327 GTGTTGGTGTGGGGCTCTTT 60.755 55.000 0.00 0.00 0.00 2.52
406 407 1.152756 GTGTTGGTGTGGGGCTCTT 60.153 57.895 0.00 0.00 0.00 2.85
407 408 2.515901 GTGTTGGTGTGGGGCTCT 59.484 61.111 0.00 0.00 0.00 4.09
408 409 2.978010 CGTGTTGGTGTGGGGCTC 60.978 66.667 0.00 0.00 0.00 4.70
409 410 2.847366 AAACGTGTTGGTGTGGGGCT 62.847 55.000 0.00 0.00 0.00 5.19
410 411 1.950973 AAAACGTGTTGGTGTGGGGC 61.951 55.000 0.00 0.00 0.00 5.80
411 412 0.101579 GAAAACGTGTTGGTGTGGGG 59.898 55.000 0.00 0.00 0.00 4.96
412 413 0.811915 TGAAAACGTGTTGGTGTGGG 59.188 50.000 0.00 0.00 0.00 4.61
413 414 2.098280 TCATGAAAACGTGTTGGTGTGG 59.902 45.455 0.00 0.00 0.00 4.17
414 415 3.412981 TCATGAAAACGTGTTGGTGTG 57.587 42.857 0.00 0.00 0.00 3.82
415 416 4.358851 CATTCATGAAAACGTGTTGGTGT 58.641 39.130 13.09 0.00 0.00 4.16
416 417 3.735240 CCATTCATGAAAACGTGTTGGTG 59.265 43.478 13.09 1.88 0.00 4.17
417 418 3.634448 TCCATTCATGAAAACGTGTTGGT 59.366 39.130 13.09 0.00 0.00 3.67
418 419 4.235939 TCCATTCATGAAAACGTGTTGG 57.764 40.909 13.09 13.36 0.00 3.77
419 420 4.554586 CGATCCATTCATGAAAACGTGTTG 59.445 41.667 13.09 4.12 0.00 3.33
420 421 4.379394 CCGATCCATTCATGAAAACGTGTT 60.379 41.667 13.09 0.00 0.00 3.32
421 422 3.126858 CCGATCCATTCATGAAAACGTGT 59.873 43.478 13.09 0.00 0.00 4.49
422 423 3.373748 TCCGATCCATTCATGAAAACGTG 59.626 43.478 13.09 6.01 0.00 4.49
423 424 3.605634 TCCGATCCATTCATGAAAACGT 58.394 40.909 13.09 0.00 0.00 3.99
424 425 4.818534 ATCCGATCCATTCATGAAAACG 57.181 40.909 13.09 12.73 0.00 3.60
425 426 5.745294 CACAATCCGATCCATTCATGAAAAC 59.255 40.000 13.09 1.97 0.00 2.43
426 427 5.651576 TCACAATCCGATCCATTCATGAAAA 59.348 36.000 13.09 1.54 0.00 2.29
427 428 5.192176 TCACAATCCGATCCATTCATGAAA 58.808 37.500 13.09 0.00 0.00 2.69
428 429 4.779696 TCACAATCCGATCCATTCATGAA 58.220 39.130 11.26 11.26 0.00 2.57
429 430 4.420522 TCACAATCCGATCCATTCATGA 57.579 40.909 0.00 0.00 0.00 3.07
430 431 4.082949 CCATCACAATCCGATCCATTCATG 60.083 45.833 0.00 0.00 0.00 3.07
431 432 4.077108 CCATCACAATCCGATCCATTCAT 58.923 43.478 0.00 0.00 0.00 2.57
432 433 3.117926 ACCATCACAATCCGATCCATTCA 60.118 43.478 0.00 0.00 0.00 2.57
433 434 3.480470 ACCATCACAATCCGATCCATTC 58.520 45.455 0.00 0.00 0.00 2.67
434 435 3.137176 AGACCATCACAATCCGATCCATT 59.863 43.478 0.00 0.00 0.00 3.16
435 436 2.707791 AGACCATCACAATCCGATCCAT 59.292 45.455 0.00 0.00 0.00 3.41
436 437 2.118679 AGACCATCACAATCCGATCCA 58.881 47.619 0.00 0.00 0.00 3.41
437 438 2.918712 AGACCATCACAATCCGATCC 57.081 50.000 0.00 0.00 0.00 3.36
438 439 4.932200 GGATTAGACCATCACAATCCGATC 59.068 45.833 6.50 0.00 37.69 3.69
439 440 4.899502 GGATTAGACCATCACAATCCGAT 58.100 43.478 6.50 0.00 37.69 4.18
440 441 4.336889 GGATTAGACCATCACAATCCGA 57.663 45.455 6.50 0.00 37.69 4.55
442 443 4.752101 CGAAGGATTAGACCATCACAATCC 59.248 45.833 11.50 11.50 44.49 3.01
443 444 5.235186 CACGAAGGATTAGACCATCACAATC 59.765 44.000 0.00 0.00 0.00 2.67
444 445 5.118990 CACGAAGGATTAGACCATCACAAT 58.881 41.667 0.00 0.00 0.00 2.71
445 446 4.503910 CACGAAGGATTAGACCATCACAA 58.496 43.478 0.00 0.00 0.00 3.33
446 447 3.678806 GCACGAAGGATTAGACCATCACA 60.679 47.826 0.00 0.00 0.00 3.58
447 448 2.866762 GCACGAAGGATTAGACCATCAC 59.133 50.000 0.00 0.00 0.00 3.06
448 449 2.499693 TGCACGAAGGATTAGACCATCA 59.500 45.455 0.00 0.00 0.00 3.07
449 450 2.866762 GTGCACGAAGGATTAGACCATC 59.133 50.000 0.00 0.00 0.00 3.51
450 451 2.236146 TGTGCACGAAGGATTAGACCAT 59.764 45.455 13.13 0.00 0.00 3.55
451 452 1.621317 TGTGCACGAAGGATTAGACCA 59.379 47.619 13.13 0.00 0.00 4.02
452 453 2.380084 TGTGCACGAAGGATTAGACC 57.620 50.000 13.13 0.00 0.00 3.85
453 454 3.326747 ACTTGTGCACGAAGGATTAGAC 58.673 45.455 23.70 0.00 0.00 2.59
454 455 3.678056 ACTTGTGCACGAAGGATTAGA 57.322 42.857 23.70 0.00 0.00 2.10
455 456 5.178623 TGTTTACTTGTGCACGAAGGATTAG 59.821 40.000 23.70 9.07 0.00 1.73
456 457 5.057819 TGTTTACTTGTGCACGAAGGATTA 58.942 37.500 23.70 11.26 0.00 1.75
457 458 3.880490 TGTTTACTTGTGCACGAAGGATT 59.120 39.130 23.70 11.96 0.00 3.01
458 459 3.472652 TGTTTACTTGTGCACGAAGGAT 58.527 40.909 23.70 12.46 0.00 3.24
459 460 2.869801 CTGTTTACTTGTGCACGAAGGA 59.130 45.455 23.70 17.25 0.00 3.36
460 461 2.869801 TCTGTTTACTTGTGCACGAAGG 59.130 45.455 23.70 11.44 0.00 3.46
461 462 4.732285 ATCTGTTTACTTGTGCACGAAG 57.268 40.909 20.47 20.47 0.00 3.79
462 463 6.795098 AATATCTGTTTACTTGTGCACGAA 57.205 33.333 13.13 6.93 0.00 3.85
463 464 6.425417 TCAAATATCTGTTTACTTGTGCACGA 59.575 34.615 13.13 9.87 0.00 4.35
464 465 6.598525 TCAAATATCTGTTTACTTGTGCACG 58.401 36.000 13.13 0.65 0.00 5.34
465 466 7.008628 GCATCAAATATCTGTTTACTTGTGCAC 59.991 37.037 10.75 10.75 0.00 4.57
466 467 7.028962 GCATCAAATATCTGTTTACTTGTGCA 58.971 34.615 0.00 0.00 0.00 4.57
467 468 7.028962 TGCATCAAATATCTGTTTACTTGTGC 58.971 34.615 0.00 0.00 0.00 4.57
468 469 9.016623 CATGCATCAAATATCTGTTTACTTGTG 57.983 33.333 0.00 0.00 0.00 3.33
469 470 7.703621 GCATGCATCAAATATCTGTTTACTTGT 59.296 33.333 14.21 0.00 0.00 3.16
470 471 7.168637 GGCATGCATCAAATATCTGTTTACTTG 59.831 37.037 21.36 0.00 0.00 3.16
471 472 7.205297 GGCATGCATCAAATATCTGTTTACTT 58.795 34.615 21.36 0.00 0.00 2.24
472 473 6.239120 GGGCATGCATCAAATATCTGTTTACT 60.239 38.462 21.36 0.00 0.00 2.24
473 474 5.922544 GGGCATGCATCAAATATCTGTTTAC 59.077 40.000 21.36 0.00 0.00 2.01
474 475 5.597594 TGGGCATGCATCAAATATCTGTTTA 59.402 36.000 21.36 0.00 0.00 2.01
475 476 4.406326 TGGGCATGCATCAAATATCTGTTT 59.594 37.500 21.36 0.00 0.00 2.83
476 477 3.962063 TGGGCATGCATCAAATATCTGTT 59.038 39.130 21.36 0.00 0.00 3.16
477 478 3.568443 TGGGCATGCATCAAATATCTGT 58.432 40.909 21.36 0.00 0.00 3.41
478 479 4.021456 ACATGGGCATGCATCAAATATCTG 60.021 41.667 21.36 12.60 42.39 2.90
479 480 4.157246 ACATGGGCATGCATCAAATATCT 58.843 39.130 21.36 0.00 42.39 1.98
480 481 4.530710 ACATGGGCATGCATCAAATATC 57.469 40.909 21.36 0.00 42.39 1.63
481 482 4.345547 TCAACATGGGCATGCATCAAATAT 59.654 37.500 21.36 0.00 42.39 1.28
482 483 3.705072 TCAACATGGGCATGCATCAAATA 59.295 39.130 21.36 0.00 42.39 1.40
483 484 2.502130 TCAACATGGGCATGCATCAAAT 59.498 40.909 21.36 6.89 42.39 2.32
484 485 1.900486 TCAACATGGGCATGCATCAAA 59.100 42.857 21.36 0.00 42.39 2.69
485 486 1.558233 TCAACATGGGCATGCATCAA 58.442 45.000 21.36 1.31 42.39 2.57
486 487 1.558233 TTCAACATGGGCATGCATCA 58.442 45.000 21.36 17.16 42.39 3.07
487 488 2.902705 ATTCAACATGGGCATGCATC 57.097 45.000 21.36 11.63 42.39 3.91
488 489 3.637911 AAATTCAACATGGGCATGCAT 57.362 38.095 21.36 1.70 42.39 3.96
489 490 3.679361 GCTAAATTCAACATGGGCATGCA 60.679 43.478 21.36 0.00 42.39 3.96
490 491 2.867975 GCTAAATTCAACATGGGCATGC 59.132 45.455 9.90 9.90 42.39 4.06
491 492 3.460103 GGCTAAATTCAACATGGGCATG 58.540 45.455 0.00 0.00 44.15 4.06
492 493 2.435437 GGGCTAAATTCAACATGGGCAT 59.565 45.455 0.00 0.00 0.00 4.40
493 494 1.830477 GGGCTAAATTCAACATGGGCA 59.170 47.619 0.00 0.00 0.00 5.36
494 495 1.202405 CGGGCTAAATTCAACATGGGC 60.202 52.381 0.00 0.00 0.00 5.36
495 496 1.202405 GCGGGCTAAATTCAACATGGG 60.202 52.381 0.00 0.00 0.00 4.00
496 497 1.750778 AGCGGGCTAAATTCAACATGG 59.249 47.619 0.00 0.00 0.00 3.66
497 498 3.876914 TCTAGCGGGCTAAATTCAACATG 59.123 43.478 1.61 0.00 0.00 3.21
498 499 4.150897 TCTAGCGGGCTAAATTCAACAT 57.849 40.909 1.61 0.00 0.00 2.71
499 500 3.620427 TCTAGCGGGCTAAATTCAACA 57.380 42.857 1.61 0.00 0.00 3.33
500 501 3.184581 CGATCTAGCGGGCTAAATTCAAC 59.815 47.826 1.61 0.00 0.00 3.18
501 502 3.069016 TCGATCTAGCGGGCTAAATTCAA 59.931 43.478 1.61 0.00 0.00 2.69
502 503 2.626266 TCGATCTAGCGGGCTAAATTCA 59.374 45.455 1.61 0.00 0.00 2.57
503 504 3.299340 TCGATCTAGCGGGCTAAATTC 57.701 47.619 1.61 0.00 0.00 2.17
504 505 3.963428 ATCGATCTAGCGGGCTAAATT 57.037 42.857 1.61 0.00 0.00 1.82
505 506 3.258372 TGAATCGATCTAGCGGGCTAAAT 59.742 43.478 0.00 0.00 0.00 1.40
506 507 2.626266 TGAATCGATCTAGCGGGCTAAA 59.374 45.455 0.00 0.00 0.00 1.85
507 508 2.030185 GTGAATCGATCTAGCGGGCTAA 60.030 50.000 0.00 0.00 0.00 3.09
508 509 1.540267 GTGAATCGATCTAGCGGGCTA 59.460 52.381 0.00 0.00 0.00 3.93
509 510 0.315568 GTGAATCGATCTAGCGGGCT 59.684 55.000 0.00 0.00 0.00 5.19
510 511 0.667792 GGTGAATCGATCTAGCGGGC 60.668 60.000 0.00 0.00 0.00 6.13
511 512 0.038159 GGGTGAATCGATCTAGCGGG 60.038 60.000 0.00 0.00 0.00 6.13
512 513 0.038159 GGGGTGAATCGATCTAGCGG 60.038 60.000 0.00 0.00 0.00 5.52
513 514 0.673985 TGGGGTGAATCGATCTAGCG 59.326 55.000 0.00 0.00 0.00 4.26
514 515 1.964223 TCTGGGGTGAATCGATCTAGC 59.036 52.381 0.00 0.12 0.00 3.42
515 516 2.029470 GCTCTGGGGTGAATCGATCTAG 60.029 54.545 0.00 0.00 0.00 2.43
516 517 1.964223 GCTCTGGGGTGAATCGATCTA 59.036 52.381 0.00 0.00 0.00 1.98
517 518 0.755686 GCTCTGGGGTGAATCGATCT 59.244 55.000 0.00 0.00 0.00 2.75
518 519 0.755686 AGCTCTGGGGTGAATCGATC 59.244 55.000 0.00 0.00 0.00 3.69
519 520 2.088104 TAGCTCTGGGGTGAATCGAT 57.912 50.000 0.00 0.00 0.00 3.59
520 521 2.088104 ATAGCTCTGGGGTGAATCGA 57.912 50.000 0.00 0.00 0.00 3.59
521 522 2.628178 TGTATAGCTCTGGGGTGAATCG 59.372 50.000 0.00 0.00 0.00 3.34
522 523 4.040952 ACATGTATAGCTCTGGGGTGAATC 59.959 45.833 0.00 0.00 0.00 2.52
523 524 3.976654 ACATGTATAGCTCTGGGGTGAAT 59.023 43.478 0.00 0.00 0.00 2.57
524 525 3.384168 ACATGTATAGCTCTGGGGTGAA 58.616 45.455 0.00 0.00 0.00 3.18
525 526 3.046283 ACATGTATAGCTCTGGGGTGA 57.954 47.619 0.00 0.00 0.00 4.02
526 527 6.211584 ACTTATACATGTATAGCTCTGGGGTG 59.788 42.308 21.65 8.71 30.53 4.61
527 528 6.211584 CACTTATACATGTATAGCTCTGGGGT 59.788 42.308 21.65 11.03 30.53 4.95
528 529 6.634805 CACTTATACATGTATAGCTCTGGGG 58.365 44.000 21.65 9.51 30.53 4.96
529 530 6.102663 GCACTTATACATGTATAGCTCTGGG 58.897 44.000 21.65 14.10 30.53 4.45
530 531 6.691508 TGCACTTATACATGTATAGCTCTGG 58.308 40.000 24.59 15.16 30.53 3.86
531 532 6.810676 CCTGCACTTATACATGTATAGCTCTG 59.189 42.308 24.59 18.43 30.53 3.35
532 533 6.721668 TCCTGCACTTATACATGTATAGCTCT 59.278 38.462 24.59 7.96 30.53 4.09
533 534 6.925211 TCCTGCACTTATACATGTATAGCTC 58.075 40.000 24.59 16.59 30.53 4.09
534 535 6.918067 TCCTGCACTTATACATGTATAGCT 57.082 37.500 24.59 14.02 30.53 3.32
535 536 7.436673 GCTATCCTGCACTTATACATGTATAGC 59.563 40.741 21.65 21.09 32.76 2.97
536 537 7.923344 GGCTATCCTGCACTTATACATGTATAG 59.077 40.741 21.65 18.01 34.04 1.31
537 538 7.619698 AGGCTATCCTGCACTTATACATGTATA 59.380 37.037 19.51 19.51 42.34 1.47
538 539 6.441924 AGGCTATCCTGCACTTATACATGTAT 59.558 38.462 21.57 21.57 42.34 2.29
539 540 5.780282 AGGCTATCCTGCACTTATACATGTA 59.220 40.000 8.27 8.27 42.34 2.29
540 541 4.594920 AGGCTATCCTGCACTTATACATGT 59.405 41.667 2.69 2.69 42.34 3.21
541 542 5.157940 AGGCTATCCTGCACTTATACATG 57.842 43.478 0.00 0.00 42.34 3.21
542 543 6.726299 TCTTAGGCTATCCTGCACTTATACAT 59.274 38.462 0.00 0.00 44.08 2.29
543 544 6.075315 TCTTAGGCTATCCTGCACTTATACA 58.925 40.000 0.00 0.00 44.08 2.29
544 545 6.591750 TCTTAGGCTATCCTGCACTTATAC 57.408 41.667 0.00 0.00 44.08 1.47
545 546 7.612065 TTTCTTAGGCTATCCTGCACTTATA 57.388 36.000 0.00 0.00 44.08 0.98
546 547 6.500589 TTTCTTAGGCTATCCTGCACTTAT 57.499 37.500 0.00 0.00 44.08 1.73
547 548 5.685075 GCTTTCTTAGGCTATCCTGCACTTA 60.685 44.000 0.00 0.00 44.08 2.24
548 549 4.775236 CTTTCTTAGGCTATCCTGCACTT 58.225 43.478 0.00 0.00 44.08 3.16
549 550 3.432890 GCTTTCTTAGGCTATCCTGCACT 60.433 47.826 0.00 0.00 44.08 4.40
550 551 2.875317 GCTTTCTTAGGCTATCCTGCAC 59.125 50.000 0.00 0.00 44.08 4.57
551 552 2.774234 AGCTTTCTTAGGCTATCCTGCA 59.226 45.455 0.00 0.00 44.08 4.41
552 553 3.483808 AGCTTTCTTAGGCTATCCTGC 57.516 47.619 0.00 0.00 44.08 4.85
553 554 4.039730 TGCTAGCTTTCTTAGGCTATCCTG 59.960 45.833 17.23 0.00 44.08 3.86
554 555 4.039852 GTGCTAGCTTTCTTAGGCTATCCT 59.960 45.833 17.23 0.00 46.57 3.24
555 556 4.202264 TGTGCTAGCTTTCTTAGGCTATCC 60.202 45.833 17.23 0.00 39.79 2.59
556 557 4.747605 GTGTGCTAGCTTTCTTAGGCTATC 59.252 45.833 17.23 0.00 39.79 2.08
557 558 4.162320 TGTGTGCTAGCTTTCTTAGGCTAT 59.838 41.667 17.23 0.00 39.79 2.97
558 559 3.513912 TGTGTGCTAGCTTTCTTAGGCTA 59.486 43.478 17.23 0.00 39.65 3.93
559 560 2.303022 TGTGTGCTAGCTTTCTTAGGCT 59.697 45.455 17.23 0.00 41.92 4.58
560 561 2.675348 CTGTGTGCTAGCTTTCTTAGGC 59.325 50.000 17.23 0.00 0.00 3.93
561 562 3.055819 TCCTGTGTGCTAGCTTTCTTAGG 60.056 47.826 17.23 14.91 0.00 2.69
562 563 3.929610 GTCCTGTGTGCTAGCTTTCTTAG 59.070 47.826 17.23 6.77 0.00 2.18
563 564 3.323691 TGTCCTGTGTGCTAGCTTTCTTA 59.676 43.478 17.23 0.00 0.00 2.10
564 565 2.104792 TGTCCTGTGTGCTAGCTTTCTT 59.895 45.455 17.23 0.00 0.00 2.52
565 566 1.694150 TGTCCTGTGTGCTAGCTTTCT 59.306 47.619 17.23 0.00 0.00 2.52
566 567 2.169832 TGTCCTGTGTGCTAGCTTTC 57.830 50.000 17.23 7.19 0.00 2.62
567 568 2.616510 GGATGTCCTGTGTGCTAGCTTT 60.617 50.000 17.23 0.00 0.00 3.51
568 569 1.065854 GGATGTCCTGTGTGCTAGCTT 60.066 52.381 17.23 0.00 0.00 3.74
569 570 0.539051 GGATGTCCTGTGTGCTAGCT 59.461 55.000 17.23 0.00 0.00 3.32
570 571 0.250234 TGGATGTCCTGTGTGCTAGC 59.750 55.000 8.10 8.10 36.82 3.42
571 572 2.800985 CGATGGATGTCCTGTGTGCTAG 60.801 54.545 0.09 0.00 36.82 3.42
572 573 1.136891 CGATGGATGTCCTGTGTGCTA 59.863 52.381 0.09 0.00 36.82 3.49
573 574 0.107993 CGATGGATGTCCTGTGTGCT 60.108 55.000 0.09 0.00 36.82 4.40
574 575 0.108186 TCGATGGATGTCCTGTGTGC 60.108 55.000 0.09 0.00 36.82 4.57
575 576 2.207590 CATCGATGGATGTCCTGTGTG 58.792 52.381 17.96 0.00 44.12 3.82
576 577 2.609427 CATCGATGGATGTCCTGTGT 57.391 50.000 17.96 0.00 44.12 3.72
585 586 3.026630 ACGCGAAATACATCGATGGAT 57.973 42.857 28.09 23.29 45.48 3.41
586 587 2.502213 ACGCGAAATACATCGATGGA 57.498 45.000 28.09 21.96 45.48 3.41
587 588 3.531982 GAAACGCGAAATACATCGATGG 58.468 45.455 28.09 11.11 45.48 3.51
588 589 3.199682 CGAAACGCGAAATACATCGATG 58.800 45.455 23.68 23.68 45.48 3.84
589 590 2.347292 GCGAAACGCGAAATACATCGAT 60.347 45.455 15.93 0.00 44.55 3.59
590 591 1.006805 GCGAAACGCGAAATACATCGA 60.007 47.619 15.93 0.00 44.55 3.59
591 592 1.363264 GCGAAACGCGAAATACATCG 58.637 50.000 15.93 12.25 44.55 3.84
603 604 1.203313 GGAACGTCTTGGCGAAACG 59.797 57.895 0.00 0.00 41.93 3.60
616 617 5.939353 ATCGGATTGATCTCAGCGGAACG 62.939 52.174 0.00 0.00 46.08 3.95
617 618 1.202417 TCGGATTGATCTCAGCGGAAC 60.202 52.381 0.00 0.00 0.00 3.62
618 619 1.111277 TCGGATTGATCTCAGCGGAA 58.889 50.000 0.00 0.00 0.00 4.30
619 620 1.332195 ATCGGATTGATCTCAGCGGA 58.668 50.000 0.00 0.00 28.49 5.54
620 621 3.902515 ATCGGATTGATCTCAGCGG 57.097 52.632 0.00 0.00 28.49 5.52
628 629 1.337260 GCCTGCTACGATCGGATTGAT 60.337 52.381 20.98 0.00 41.06 2.57
629 630 0.032130 GCCTGCTACGATCGGATTGA 59.968 55.000 20.98 0.00 0.00 2.57
630 631 0.946221 GGCCTGCTACGATCGGATTG 60.946 60.000 20.98 0.36 0.00 2.67
631 632 1.367840 GGCCTGCTACGATCGGATT 59.632 57.895 20.98 0.30 0.00 3.01
632 633 2.920645 CGGCCTGCTACGATCGGAT 61.921 63.158 20.98 1.14 0.00 4.18
633 634 3.592814 CGGCCTGCTACGATCGGA 61.593 66.667 20.98 10.66 0.00 4.55
634 635 3.133767 TTCGGCCTGCTACGATCGG 62.134 63.158 20.98 3.26 39.06 4.18
635 636 1.658717 CTTCGGCCTGCTACGATCG 60.659 63.158 14.88 14.88 39.06 3.69
636 637 1.951631 GCTTCGGCCTGCTACGATC 60.952 63.158 0.00 0.00 39.06 3.69
637 638 2.107141 GCTTCGGCCTGCTACGAT 59.893 61.111 0.00 0.00 39.06 3.73
638 639 4.492160 CGCTTCGGCCTGCTACGA 62.492 66.667 0.00 0.00 37.76 3.43
639 640 4.492160 TCGCTTCGGCCTGCTACG 62.492 66.667 0.00 0.00 37.76 3.51
640 641 2.356818 ATCTCGCTTCGGCCTGCTAC 62.357 60.000 0.00 0.00 37.76 3.58
641 642 2.076622 GATCTCGCTTCGGCCTGCTA 62.077 60.000 0.00 0.00 37.76 3.49
642 643 3.438017 GATCTCGCTTCGGCCTGCT 62.438 63.158 0.00 0.00 37.76 4.24
643 644 2.964389 GATCTCGCTTCGGCCTGC 60.964 66.667 0.00 1.16 37.76 4.85
644 645 1.068753 ATGATCTCGCTTCGGCCTG 59.931 57.895 0.00 0.00 37.76 4.85
645 646 1.068753 CATGATCTCGCTTCGGCCT 59.931 57.895 0.00 0.00 37.76 5.19
646 647 0.032130 TACATGATCTCGCTTCGGCC 59.968 55.000 0.00 0.00 37.76 6.13
647 648 1.132588 GTACATGATCTCGCTTCGGC 58.867 55.000 0.00 0.00 37.65 5.54
648 649 1.268589 ACGTACATGATCTCGCTTCGG 60.269 52.381 0.00 0.00 0.00 4.30
649 650 2.106750 ACGTACATGATCTCGCTTCG 57.893 50.000 0.00 0.00 0.00 3.79
650 651 2.965414 CGTACGTACATGATCTCGCTTC 59.035 50.000 24.50 0.00 0.00 3.86
651 652 2.853662 GCGTACGTACATGATCTCGCTT 60.854 50.000 24.50 0.00 39.43 4.68
652 653 1.333881 GCGTACGTACATGATCTCGCT 60.334 52.381 24.50 0.00 39.43 4.93
653 654 1.043224 GCGTACGTACATGATCTCGC 58.957 55.000 24.50 15.55 36.06 5.03
654 655 2.665056 AGCGTACGTACATGATCTCG 57.335 50.000 24.50 9.75 0.00 4.04
655 656 4.669728 GTGTAAGCGTACGTACATGATCTC 59.330 45.833 24.50 9.28 41.71 2.75
656 657 4.095334 TGTGTAAGCGTACGTACATGATCT 59.905 41.667 24.50 10.27 41.71 2.75
657 658 4.345288 TGTGTAAGCGTACGTACATGATC 58.655 43.478 24.50 12.10 41.71 2.92
658 659 4.348656 CTGTGTAAGCGTACGTACATGAT 58.651 43.478 24.50 6.05 41.71 2.45
659 660 3.750512 CTGTGTAAGCGTACGTACATGA 58.249 45.455 24.50 3.80 41.71 3.07
660 661 2.278094 GCTGTGTAAGCGTACGTACATG 59.722 50.000 24.50 14.64 43.45 3.21
661 662 2.523015 GCTGTGTAAGCGTACGTACAT 58.477 47.619 24.50 12.70 43.45 2.29
662 663 1.967762 GCTGTGTAAGCGTACGTACA 58.032 50.000 24.50 15.11 43.45 2.90
672 673 2.932614 GGTATGTCTGCAGCTGTGTAAG 59.067 50.000 16.64 8.40 0.00 2.34
673 674 2.567169 AGGTATGTCTGCAGCTGTGTAA 59.433 45.455 16.64 0.00 0.00 2.41
674 675 2.179427 AGGTATGTCTGCAGCTGTGTA 58.821 47.619 16.64 1.32 0.00 2.90
675 676 0.979665 AGGTATGTCTGCAGCTGTGT 59.020 50.000 16.64 0.00 0.00 3.72
676 677 2.094026 TGTAGGTATGTCTGCAGCTGTG 60.094 50.000 16.64 9.01 0.00 3.66
677 678 2.179427 TGTAGGTATGTCTGCAGCTGT 58.821 47.619 16.64 0.00 0.00 4.40
678 679 2.967599 TGTAGGTATGTCTGCAGCTG 57.032 50.000 10.11 10.11 0.00 4.24
679 680 4.590647 ACATATGTAGGTATGTCTGCAGCT 59.409 41.667 9.47 1.25 40.35 4.24
680 681 4.887748 ACATATGTAGGTATGTCTGCAGC 58.112 43.478 9.47 4.92 40.35 5.25
681 682 7.087007 CAGTACATATGTAGGTATGTCTGCAG 58.913 42.308 15.93 7.63 42.63 4.41
682 683 6.015434 CCAGTACATATGTAGGTATGTCTGCA 60.015 42.308 15.93 0.00 42.63 4.41
683 684 6.208797 TCCAGTACATATGTAGGTATGTCTGC 59.791 42.308 15.93 0.74 42.63 4.26
684 685 7.448777 AGTCCAGTACATATGTAGGTATGTCTG 59.551 40.741 15.93 15.63 42.63 3.51
685 686 7.527796 AGTCCAGTACATATGTAGGTATGTCT 58.472 38.462 15.93 5.10 42.63 3.41
686 687 7.762588 AGTCCAGTACATATGTAGGTATGTC 57.237 40.000 15.93 2.83 42.63 3.06
687 688 9.298250 CTAAGTCCAGTACATATGTAGGTATGT 57.702 37.037 15.93 5.09 44.92 2.29
688 689 9.516546 TCTAAGTCCAGTACATATGTAGGTATG 57.483 37.037 15.93 11.73 37.92 2.39
703 704 8.897752 GCTTGATTGATTTTATCTAAGTCCAGT 58.102 33.333 0.00 0.00 0.00 4.00
704 705 8.896744 TGCTTGATTGATTTTATCTAAGTCCAG 58.103 33.333 0.00 0.00 0.00 3.86
705 706 8.806429 TGCTTGATTGATTTTATCTAAGTCCA 57.194 30.769 0.00 0.00 0.00 4.02
706 707 7.859875 GCTGCTTGATTGATTTTATCTAAGTCC 59.140 37.037 0.00 0.00 0.00 3.85
707 708 7.859875 GGCTGCTTGATTGATTTTATCTAAGTC 59.140 37.037 0.00 0.00 0.00 3.01
708 709 7.559170 AGGCTGCTTGATTGATTTTATCTAAGT 59.441 33.333 0.00 0.00 0.00 2.24
709 710 7.938715 AGGCTGCTTGATTGATTTTATCTAAG 58.061 34.615 0.00 0.00 0.00 2.18
710 711 7.886629 AGGCTGCTTGATTGATTTTATCTAA 57.113 32.000 0.00 0.00 0.00 2.10
711 712 7.013655 GGAAGGCTGCTTGATTGATTTTATCTA 59.986 37.037 0.00 0.00 0.00 1.98
712 713 6.183360 GGAAGGCTGCTTGATTGATTTTATCT 60.183 38.462 0.00 0.00 0.00 1.98
713 714 5.981915 GGAAGGCTGCTTGATTGATTTTATC 59.018 40.000 0.00 0.00 0.00 1.75
714 715 5.659971 AGGAAGGCTGCTTGATTGATTTTAT 59.340 36.000 0.00 0.00 0.00 1.40
715 716 5.018809 AGGAAGGCTGCTTGATTGATTTTA 58.981 37.500 0.00 0.00 0.00 1.52
716 717 3.836562 AGGAAGGCTGCTTGATTGATTTT 59.163 39.130 0.00 0.00 0.00 1.82
717 718 3.438183 AGGAAGGCTGCTTGATTGATTT 58.562 40.909 0.00 0.00 0.00 2.17
718 719 3.097342 AGGAAGGCTGCTTGATTGATT 57.903 42.857 0.00 0.00 0.00 2.57
719 720 2.822707 AGGAAGGCTGCTTGATTGAT 57.177 45.000 0.00 0.00 0.00 2.57
720 721 2.356125 GGTAGGAAGGCTGCTTGATTGA 60.356 50.000 0.00 0.00 0.00 2.57
721 722 2.019984 GGTAGGAAGGCTGCTTGATTG 58.980 52.381 0.00 0.00 0.00 2.67
722 723 1.064389 GGGTAGGAAGGCTGCTTGATT 60.064 52.381 0.00 0.00 0.00 2.57
723 724 0.548510 GGGTAGGAAGGCTGCTTGAT 59.451 55.000 0.00 0.00 0.00 2.57
724 725 1.899437 CGGGTAGGAAGGCTGCTTGA 61.899 60.000 0.00 0.00 0.00 3.02
725 726 1.450312 CGGGTAGGAAGGCTGCTTG 60.450 63.158 0.00 0.00 0.00 4.01
726 727 2.990479 CGGGTAGGAAGGCTGCTT 59.010 61.111 0.00 0.00 0.00 3.91
727 728 3.787001 GCGGGTAGGAAGGCTGCT 61.787 66.667 0.00 0.00 0.00 4.24
728 729 3.330992 AAGCGGGTAGGAAGGCTGC 62.331 63.158 0.00 0.00 35.59 5.25
729 730 1.450312 CAAGCGGGTAGGAAGGCTG 60.450 63.158 0.00 0.00 35.59 4.85
730 731 2.990479 CAAGCGGGTAGGAAGGCT 59.010 61.111 0.00 0.00 37.33 4.58
731 732 1.968050 TAGCAAGCGGGTAGGAAGGC 61.968 60.000 0.00 0.00 0.00 4.35
732 733 0.759346 ATAGCAAGCGGGTAGGAAGG 59.241 55.000 0.00 0.00 32.04 3.46
733 734 2.628657 AGTATAGCAAGCGGGTAGGAAG 59.371 50.000 0.00 0.00 32.04 3.46
734 735 2.674420 AGTATAGCAAGCGGGTAGGAA 58.326 47.619 0.00 0.00 32.04 3.36
735 736 2.376695 AGTATAGCAAGCGGGTAGGA 57.623 50.000 0.00 0.00 32.04 2.94
736 737 3.470645 AAAGTATAGCAAGCGGGTAGG 57.529 47.619 0.00 0.00 32.04 3.18
737 738 5.449107 TCTAAAGTATAGCAAGCGGGTAG 57.551 43.478 0.00 0.00 32.04 3.18
738 739 5.857471 TTCTAAAGTATAGCAAGCGGGTA 57.143 39.130 0.00 0.00 0.00 3.69
739 740 4.748277 TTCTAAAGTATAGCAAGCGGGT 57.252 40.909 0.00 0.00 0.00 5.28
740 741 5.057149 ACATTCTAAAGTATAGCAAGCGGG 58.943 41.667 0.00 0.00 0.00 6.13
741 742 6.604735 AACATTCTAAAGTATAGCAAGCGG 57.395 37.500 0.00 0.00 0.00 5.52
742 743 8.354011 ACTAACATTCTAAAGTATAGCAAGCG 57.646 34.615 0.00 0.00 0.00 4.68
775 776 2.223994 GGACTGCGGGTAGGAAGTATTC 60.224 54.545 0.00 0.00 46.67 1.75
776 777 1.761198 GGACTGCGGGTAGGAAGTATT 59.239 52.381 0.00 0.00 0.00 1.89
777 778 1.063114 AGGACTGCGGGTAGGAAGTAT 60.063 52.381 0.00 0.00 0.00 2.12
778 779 0.333993 AGGACTGCGGGTAGGAAGTA 59.666 55.000 0.00 0.00 0.00 2.24
779 780 0.544595 AAGGACTGCGGGTAGGAAGT 60.545 55.000 0.00 0.00 0.00 3.01
780 781 0.613777 AAAGGACTGCGGGTAGGAAG 59.386 55.000 0.00 0.00 0.00 3.46
781 782 1.061546 AAAAGGACTGCGGGTAGGAA 58.938 50.000 0.00 0.00 0.00 3.36
782 783 1.061546 AAAAAGGACTGCGGGTAGGA 58.938 50.000 0.00 0.00 0.00 2.94
783 784 3.644861 AAAAAGGACTGCGGGTAGG 57.355 52.632 0.00 0.00 0.00 3.18
2816 3964 4.322953 GGAATGGTCATTGTGAATTGGCTT 60.323 41.667 0.43 0.00 0.00 4.35
2866 4014 6.016024 CCATATAACCTGGAATGGTCATTGTG 60.016 42.308 0.00 0.00 39.83 3.33
2867 4015 6.070656 CCATATAACCTGGAATGGTCATTGT 58.929 40.000 0.00 0.00 39.83 2.71
2868 4016 6.579666 CCATATAACCTGGAATGGTCATTG 57.420 41.667 0.00 0.00 39.83 2.82
2874 4022 8.533569 AAAGTTAACCATATAACCTGGAATGG 57.466 34.615 0.00 10.22 43.73 3.16
2878 4026 9.895138 GAGTAAAAGTTAACCATATAACCTGGA 57.105 33.333 0.00 0.00 36.62 3.86
2879 4027 9.901172 AGAGTAAAAGTTAACCATATAACCTGG 57.099 33.333 0.88 0.00 36.62 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.