Multiple sequence alignment - TraesCS2A01G054300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G054300 chr2A 100.000 4865 0 0 1 4865 22579103 22583967 0.000000e+00 8985.0
1 TraesCS2A01G054300 chr2A 84.810 316 45 3 4449 4764 279486168 279485856 1.020000e-81 315.0
2 TraesCS2A01G054300 chr2A 89.167 240 12 2 4637 4865 353481840 353481604 2.220000e-73 287.0
3 TraesCS2A01G054300 chr2A 84.444 225 34 1 906 1129 348214220 348214444 2.280000e-53 220.0
4 TraesCS2A01G054300 chr1A 98.811 2523 29 1 1432 3953 332044845 332047367 0.000000e+00 4492.0
5 TraesCS2A01G054300 chr1A 90.262 2023 140 29 1 2000 229419095 229421083 0.000000e+00 2591.0
6 TraesCS2A01G054300 chr1A 98.231 1187 20 1 209 1394 332043664 332044850 0.000000e+00 2074.0
7 TraesCS2A01G054300 chr1A 97.515 684 14 3 3953 4635 332051613 332052294 0.000000e+00 1166.0
8 TraesCS2A01G054300 chr1A 86.560 811 54 25 3479 4269 229421174 229421949 0.000000e+00 843.0
9 TraesCS2A01G054300 chr1A 76.068 351 54 21 4264 4609 516718730 516718405 6.520000e-34 156.0
10 TraesCS2A01G054300 chr6D 89.543 2649 182 40 64 2672 38543045 38540452 0.000000e+00 3269.0
11 TraesCS2A01G054300 chr6D 90.591 2030 137 27 64 2069 38474736 38476735 0.000000e+00 2641.0
12 TraesCS2A01G054300 chr6D 91.441 1110 79 10 2105 3205 38477179 38478281 0.000000e+00 1509.0
13 TraesCS2A01G054300 chr6D 88.900 973 72 22 162 1119 291605475 291606426 0.000000e+00 1166.0
14 TraesCS2A01G054300 chr6D 90.401 823 51 14 2661 3458 38538985 38538166 0.000000e+00 1057.0
15 TraesCS2A01G054300 chr6D 88.058 829 52 17 3455 4269 38478632 38479427 0.000000e+00 939.0
16 TraesCS2A01G054300 chr6D 86.610 829 53 20 3455 4269 38538109 38537325 0.000000e+00 863.0
17 TraesCS2A01G054300 chr6D 83.871 496 37 18 3790 4269 291606425 291606893 2.690000e-117 433.0
18 TraesCS2A01G054300 chr6D 90.726 248 22 1 3212 3458 38478331 38478578 3.630000e-86 329.0
19 TraesCS2A01G054300 chr6D 91.441 222 17 2 3238 3458 62242336 62242116 2.200000e-78 303.0
20 TraesCS2A01G054300 chr6D 80.387 413 53 15 3695 4098 429335555 429335162 6.160000e-74 289.0
21 TraesCS2A01G054300 chr6D 92.614 176 11 2 4592 4767 291638087 291638260 8.080000e-63 252.0
22 TraesCS2A01G054300 chr1D 87.749 2212 164 46 1322 3456 415651220 415649039 0.000000e+00 2484.0
23 TraesCS2A01G054300 chr1D 81.068 412 49 13 3696 4098 7096564 7096173 7.910000e-78 302.0
24 TraesCS2A01G054300 chr1D 91.503 153 13 0 1704 1856 44268722 44268570 1.370000e-50 211.0
25 TraesCS2A01G054300 chr1D 91.216 148 13 0 1705 1852 44149298 44149151 8.260000e-48 202.0
26 TraesCS2A01G054300 chr1D 90.789 152 13 1 1705 1856 44167438 44167288 8.260000e-48 202.0
27 TraesCS2A01G054300 chr1D 90.196 153 14 1 1705 1856 43830422 43830270 1.070000e-46 198.0
28 TraesCS2A01G054300 chr1D 88.816 152 17 0 1705 1856 44540855 44540704 2.310000e-43 187.0
29 TraesCS2A01G054300 chr2B 88.801 1134 86 22 1 1119 798275266 798274159 0.000000e+00 1352.0
30 TraesCS2A01G054300 chr2B 84.889 225 33 1 906 1129 40910486 40910710 4.900000e-55 226.0
31 TraesCS2A01G054300 chr2B 87.075 147 8 10 4263 4404 58920835 58920975 6.520000e-34 156.0
32 TraesCS2A01G054300 chr3B 87.810 1050 90 10 2435 3448 810247273 810248320 0.000000e+00 1195.0
33 TraesCS2A01G054300 chr3B 88.386 508 49 8 1381 1880 754784620 754785125 1.940000e-168 603.0
34 TraesCS2A01G054300 chr3B 90.094 424 35 5 974 1394 754784159 754784578 1.190000e-150 544.0
35 TraesCS2A01G054300 chr3B 83.596 445 37 13 2701 3136 457020638 457021055 7.640000e-103 385.0
36 TraesCS2A01G054300 chr3B 89.764 254 25 1 3455 3707 430930205 430929952 1.690000e-84 324.0
37 TraesCS2A01G054300 chr3B 89.723 253 25 1 3455 3707 773148622 773148873 6.070000e-84 322.0
38 TraesCS2A01G054300 chr3B 82.222 180 30 2 370 548 161692329 161692151 2.340000e-33 154.0
39 TraesCS2A01G054300 chr3B 85.616 146 13 8 4263 4404 810249175 810249316 3.920000e-31 147.0
40 TraesCS2A01G054300 chr3D 88.592 973 75 22 162 1119 485146366 485147317 0.000000e+00 1149.0
41 TraesCS2A01G054300 chr3D 89.189 518 32 9 1254 1759 6153030 6153535 4.130000e-175 625.0
42 TraesCS2A01G054300 chr3D 90.323 434 36 3 2706 3136 355886910 355887340 9.140000e-157 564.0
43 TraesCS2A01G054300 chr3D 84.168 499 35 15 3790 4269 485147316 485147789 1.240000e-120 444.0
44 TraesCS2A01G054300 chr3D 92.027 301 22 1 2593 2893 6154942 6155240 5.820000e-114 422.0
45 TraesCS2A01G054300 chr3D 87.768 327 36 2 906 1231 6151756 6152079 3.550000e-101 379.0
46 TraesCS2A01G054300 chr3D 92.373 236 14 3 2071 2302 6153572 6153807 2.810000e-87 333.0
47 TraesCS2A01G054300 chr3D 88.593 263 28 2 3445 3707 66249447 66249707 7.860000e-83 318.0
48 TraesCS2A01G054300 chr3D 88.559 236 19 8 1637 1869 53777611 53777381 3.710000e-71 279.0
49 TraesCS2A01G054300 chr3D 87.137 241 15 3 4637 4865 120281293 120281057 4.830000e-65 259.0
50 TraesCS2A01G054300 chr3D 85.778 225 31 1 906 1129 165468372 165468596 2.260000e-58 237.0
51 TraesCS2A01G054300 chr3D 85.034 147 11 10 4263 4404 569244824 569244684 6.570000e-29 139.0
52 TraesCS2A01G054300 chr3D 95.000 60 3 0 1125 1184 6153469 6153528 1.440000e-15 95.3
53 TraesCS2A01G054300 chr3D 85.882 85 11 1 3353 3436 351934988 351934904 6.710000e-14 89.8
54 TraesCS2A01G054300 chr3D 85.882 85 11 1 3353 3436 578056924 578056840 6.710000e-14 89.8
55 TraesCS2A01G054300 chr3D 100.000 40 0 0 3306 3345 165469261 165469300 1.880000e-09 75.0
56 TraesCS2A01G054300 chr3D 96.970 33 1 0 2308 2340 644864 644896 6.800000e-04 56.5
57 TraesCS2A01G054300 chr5A 87.775 908 75 10 2071 2945 572508857 572507953 0.000000e+00 1029.0
58 TraesCS2A01G054300 chr5A 87.041 872 79 14 906 1759 572509749 572508894 0.000000e+00 953.0
59 TraesCS2A01G054300 chr5A 81.890 508 63 22 4270 4766 219226384 219226873 7.580000e-108 401.0
60 TraesCS2A01G054300 chr5A 85.676 377 39 10 4351 4719 648949446 648949815 2.750000e-102 383.0
61 TraesCS2A01G054300 chr5A 90.991 222 19 1 3238 3458 648947557 648947778 1.020000e-76 298.0
62 TraesCS2A01G054300 chr7A 92.399 671 44 4 2538 3205 239111719 239111053 0.000000e+00 950.0
63 TraesCS2A01G054300 chr7A 86.578 827 63 15 3458 4272 239110695 239109905 0.000000e+00 869.0
64 TraesCS2A01G054300 chr7A 91.093 247 22 0 3212 3458 239111004 239110758 7.800000e-88 335.0
65 TraesCS2A01G054300 chr7A 89.723 253 26 0 3455 3707 13395658 13395910 1.690000e-84 324.0
66 TraesCS2A01G054300 chr7A 84.889 225 33 1 906 1129 49363668 49363444 4.900000e-55 226.0
67 TraesCS2A01G054300 chr7A 86.935 199 22 2 4603 4801 518147809 518148003 2.280000e-53 220.0
68 TraesCS2A01G054300 chr7A 94.737 38 1 1 4829 4865 92746094 92746057 1.890000e-04 58.4
69 TraesCS2A01G054300 chr7B 84.801 829 58 21 3455 4269 394336550 394337324 0.000000e+00 771.0
70 TraesCS2A01G054300 chr7B 83.239 352 34 14 4263 4603 394337396 394337733 2.850000e-77 300.0
71 TraesCS2A01G054300 chr7B 89.474 190 17 3 1639 1825 232754300 232754489 2.260000e-58 237.0
72 TraesCS2A01G054300 chr7B 84.000 225 35 1 906 1129 256487141 256486917 1.060000e-51 215.0
73 TraesCS2A01G054300 chr7B 77.429 319 42 21 4263 4576 489411601 489411894 3.900000e-36 163.0
74 TraesCS2A01G054300 chr7B 100.000 36 0 0 1160 1195 232754237 232754272 3.140000e-07 67.6
75 TraesCS2A01G054300 chr5B 89.307 505 44 8 1384 1880 613172065 613171563 4.130000e-175 625.0
76 TraesCS2A01G054300 chr5B 89.461 427 41 3 974 1397 613172532 613172107 1.990000e-148 536.0
77 TraesCS2A01G054300 chr5B 89.640 222 19 3 3238 3458 384318671 384318453 3.710000e-71 279.0
78 TraesCS2A01G054300 chr5B 87.838 222 20 4 3238 3458 384002429 384002644 2.250000e-63 254.0
79 TraesCS2A01G054300 chr5B 90.000 190 16 3 1639 1825 710171347 710171158 4.860000e-60 243.0
80 TraesCS2A01G054300 chr5B 84.000 225 34 2 906 1129 470246198 470245975 1.060000e-51 215.0
81 TraesCS2A01G054300 chr6B 84.292 643 73 18 2059 2682 511294306 511293673 1.940000e-168 603.0
82 TraesCS2A01G054300 chr6B 83.636 660 80 18 2040 2682 266859982 266860630 3.240000e-166 595.0
83 TraesCS2A01G054300 chr6B 84.375 512 47 18 2040 2534 247028141 247028636 5.700000e-129 472.0
84 TraesCS2A01G054300 chr3A 89.318 440 41 3 2701 3136 474964062 474964499 9.210000e-152 547.0
85 TraesCS2A01G054300 chr3A 89.370 254 26 1 3455 3707 116656909 116656656 7.860000e-83 318.0
86 TraesCS2A01G054300 chr3A 90.991 222 19 1 3238 3458 184643872 184643651 1.020000e-76 298.0
87 TraesCS2A01G054300 chr4A 82.989 435 46 17 4263 4686 374564546 374564963 7.690000e-98 368.0
88 TraesCS2A01G054300 chr4A 89.328 253 27 0 3455 3707 13437715 13437967 7.860000e-83 318.0
89 TraesCS2A01G054300 chr4A 89.954 219 18 4 1637 1853 16828224 16828008 3.710000e-71 279.0
90 TraesCS2A01G054300 chr4A 83.630 281 23 11 4607 4865 226021554 226021833 4.860000e-60 243.0
91 TraesCS2A01G054300 chr4A 85.714 147 9 11 4263 4404 650159086 650158947 1.410000e-30 145.0
92 TraesCS2A01G054300 chr4A 90.541 74 7 0 4141 4214 725948987 725949060 1.110000e-16 99.0
93 TraesCS2A01G054300 chr6A 83.871 372 49 10 4270 4635 111847957 111848323 1.300000e-90 344.0
94 TraesCS2A01G054300 chr5D 85.813 289 31 6 4353 4635 139305448 139305732 1.020000e-76 298.0
95 TraesCS2A01G054300 chr5D 90.991 222 19 1 3238 3458 170395306 170395085 1.020000e-76 298.0
96 TraesCS2A01G054300 chr5D 84.775 289 33 6 4353 4635 139300082 139300365 3.710000e-71 279.0
97 TraesCS2A01G054300 chr5D 84.247 292 37 5 4351 4637 170384304 170384017 4.800000e-70 276.0
98 TraesCS2A01G054300 chr5D 89.623 212 21 1 3238 3448 139287402 139287613 8.030000e-68 268.0
99 TraesCS2A01G054300 chr5D 88.398 181 21 0 2274 2454 22571128 22571308 8.200000e-53 219.0
100 TraesCS2A01G054300 chr5D 86.614 127 17 0 1006 1132 170397461 170397335 1.830000e-29 141.0
101 TraesCS2A01G054300 chr5D 89.423 104 10 1 906 1009 170399066 170398964 3.950000e-26 130.0
102 TraesCS2A01G054300 chr4D 80.630 413 51 16 3695 4098 215199594 215199202 4.760000e-75 292.0
103 TraesCS2A01G054300 chr4D 80.387 413 53 15 3695 4098 228112208 228111815 6.160000e-74 289.0
104 TraesCS2A01G054300 chr4D 80.340 412 52 13 3696 4098 386173032 386173423 7.970000e-73 285.0
105 TraesCS2A01G054300 chr4D 80.303 396 49 13 3696 4082 215164677 215165052 6.200000e-69 272.0
106 TraesCS2A01G054300 chr4D 83.810 105 9 4 24 127 113171291 113171388 5.180000e-15 93.5
107 TraesCS2A01G054300 chr4D 85.882 85 11 1 3353 3436 15086694 15086610 6.710000e-14 89.8
108 TraesCS2A01G054300 chr4D 89.552 67 4 3 1144 1210 207696386 207696449 1.120000e-11 82.4
109 TraesCS2A01G054300 chr7D 80.535 411 52 16 3696 4098 116803843 116803453 1.710000e-74 291.0
110 TraesCS2A01G054300 chr1B 100.000 40 0 0 3306 3345 540131957 540131918 1.880000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G054300 chr2A 22579103 22583967 4864 False 8985.000000 8985 100.000000 1 4865 1 chr2A.!!$F1 4864
1 TraesCS2A01G054300 chr1A 332043664 332047367 3703 False 3283.000000 4492 98.521000 209 3953 2 chr1A.!!$F3 3744
2 TraesCS2A01G054300 chr1A 229419095 229421949 2854 False 1717.000000 2591 88.411000 1 4269 2 chr1A.!!$F2 4268
3 TraesCS2A01G054300 chr1A 332051613 332052294 681 False 1166.000000 1166 97.515000 3953 4635 1 chr1A.!!$F1 682
4 TraesCS2A01G054300 chr6D 38537325 38543045 5720 True 1729.666667 3269 88.851333 64 4269 3 chr6D.!!$R3 4205
5 TraesCS2A01G054300 chr6D 38474736 38479427 4691 False 1354.500000 2641 90.204000 64 4269 4 chr6D.!!$F2 4205
6 TraesCS2A01G054300 chr6D 291605475 291606893 1418 False 799.500000 1166 86.385500 162 4269 2 chr6D.!!$F3 4107
7 TraesCS2A01G054300 chr1D 415649039 415651220 2181 True 2484.000000 2484 87.749000 1322 3456 1 chr1D.!!$R7 2134
8 TraesCS2A01G054300 chr2B 798274159 798275266 1107 True 1352.000000 1352 88.801000 1 1119 1 chr2B.!!$R1 1118
9 TraesCS2A01G054300 chr3B 810247273 810249316 2043 False 671.000000 1195 86.713000 2435 4404 2 chr3B.!!$F4 1969
10 TraesCS2A01G054300 chr3B 754784159 754785125 966 False 573.500000 603 89.240000 974 1880 2 chr3B.!!$F3 906
11 TraesCS2A01G054300 chr3D 485146366 485147789 1423 False 796.500000 1149 86.380000 162 4269 2 chr3D.!!$F6 4107
12 TraesCS2A01G054300 chr3D 6151756 6155240 3484 False 370.860000 625 91.271400 906 2893 5 chr3D.!!$F4 1987
13 TraesCS2A01G054300 chr5A 572507953 572509749 1796 True 991.000000 1029 87.408000 906 2945 2 chr5A.!!$R1 2039
14 TraesCS2A01G054300 chr5A 648947557 648949815 2258 False 340.500000 383 88.333500 3238 4719 2 chr5A.!!$F2 1481
15 TraesCS2A01G054300 chr7A 239109905 239111719 1814 True 718.000000 950 90.023333 2538 4272 3 chr7A.!!$R3 1734
16 TraesCS2A01G054300 chr7B 394336550 394337733 1183 False 535.500000 771 84.020000 3455 4603 2 chr7B.!!$F3 1148
17 TraesCS2A01G054300 chr5B 613171563 613172532 969 True 580.500000 625 89.384000 974 1880 2 chr5B.!!$R4 906
18 TraesCS2A01G054300 chr6B 511293673 511294306 633 True 603.000000 603 84.292000 2059 2682 1 chr6B.!!$R1 623
19 TraesCS2A01G054300 chr6B 266859982 266860630 648 False 595.000000 595 83.636000 2040 2682 1 chr6B.!!$F2 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 0.594602 TGCATGACAAGTTCTGCTGC 59.405 50.000 0.00 0.0 35.66 5.25 F
988 1016 0.725784 CGTCGCATTGCAACTTCCAC 60.726 55.000 0.00 0.0 0.00 4.02 F
1408 2435 2.563179 ACTCATCGGTTCACTTAGCACT 59.437 45.455 0.00 0.0 0.00 4.40 F
2498 4023 1.420138 GTGGAGTCCAAGGAGGTTCAA 59.580 52.381 15.09 0.0 39.02 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1807 2846 3.832527 ACTGTAACCAAGTTCAAGCCAT 58.167 40.909 0.00 0.0 0.0 4.40 R
2498 4023 0.689055 TTGCTGGCATGTCTGAGAGT 59.311 50.000 8.55 0.0 0.0 3.24 R
3015 6845 4.382147 GGTTTCCAAGTAACAAAGCACCAA 60.382 41.667 0.00 0.0 0.0 3.67 R
4103 9335 0.756294 ATCACGTCAGAACCCACACA 59.244 50.000 0.00 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 0.594602 TGCATGACAAGTTCTGCTGC 59.405 50.000 0.00 0.00 35.66 5.25
83 84 0.879765 GCATGACAAGTTCTGCTGCT 59.120 50.000 0.00 0.00 0.00 4.24
84 85 1.401148 GCATGACAAGTTCTGCTGCTG 60.401 52.381 0.00 0.00 0.00 4.41
85 86 2.148768 CATGACAAGTTCTGCTGCTGA 58.851 47.619 5.03 5.03 0.00 4.26
86 87 2.556144 TGACAAGTTCTGCTGCTGAT 57.444 45.000 10.09 0.00 0.00 2.90
87 88 2.148768 TGACAAGTTCTGCTGCTGATG 58.851 47.619 10.09 8.31 0.00 3.07
140 141 6.312141 TGGATGTTCATGTCAGGATTTCTA 57.688 37.500 0.00 0.00 0.00 2.10
160 161 8.712228 TTTCTATAGGAGCATCTACATTCAGA 57.288 34.615 0.00 0.00 33.73 3.27
168 169 8.216423 AGGAGCATCTACATTCAGAACAATATT 58.784 33.333 0.00 0.00 33.73 1.28
178 179 9.524106 ACATTCAGAACAATATTTATGCATGTG 57.476 29.630 10.16 0.43 34.61 3.21
179 180 9.738832 CATTCAGAACAATATTTATGCATGTGA 57.261 29.630 10.16 0.00 0.00 3.58
286 288 7.255139 GCAAGGTTTTACTCACACTACATTTCT 60.255 37.037 0.00 0.00 0.00 2.52
356 359 7.596248 CACTTTTGTTCTGGTTCAATTCTATGG 59.404 37.037 0.00 0.00 0.00 2.74
460 465 3.530260 CATTGCCCCATGACCCGC 61.530 66.667 0.00 0.00 0.00 6.13
521 526 5.674318 GCATGCATGGCAAAATTTAGTTTCC 60.674 40.000 27.34 1.22 43.62 3.13
625 630 7.374272 TCGATTGTTGATTAAATTTCCAAGCA 58.626 30.769 0.00 0.00 0.00 3.91
788 805 3.157087 AGTGCCCCATAGAAAACAACTG 58.843 45.455 0.00 0.00 0.00 3.16
953 981 2.711922 GCCGTGTCCCTCGATCAGT 61.712 63.158 0.00 0.00 0.00 3.41
988 1016 0.725784 CGTCGCATTGCAACTTCCAC 60.726 55.000 0.00 0.00 0.00 4.02
994 1022 3.366273 CGCATTGCAACTTCCACAGTAAT 60.366 43.478 0.00 0.00 32.94 1.89
1205 1242 4.801330 TCCGATTGCTCTTCAGTTTCTA 57.199 40.909 0.00 0.00 0.00 2.10
1408 2435 2.563179 ACTCATCGGTTCACTTAGCACT 59.437 45.455 0.00 0.00 0.00 4.40
1807 2846 6.323739 TGCTGACTACATATACCTGAACATGA 59.676 38.462 0.00 0.00 0.00 3.07
2402 3894 3.769300 AGAAAAAGGTTGGTGTGAGCTTT 59.231 39.130 0.00 0.00 44.16 3.51
2498 4023 1.420138 GTGGAGTCCAAGGAGGTTCAA 59.580 52.381 15.09 0.00 39.02 2.69
3859 8112 2.421424 GCTTGTGTAGGGAGCTCAATTG 59.579 50.000 17.19 0.00 33.72 2.32
3864 8117 1.559682 GTAGGGAGCTCAATTGGGTGA 59.440 52.381 17.19 0.00 0.00 4.02
3898 8152 7.114754 TGTCAAAGAGAATTCTATCAGCCAAT 58.885 34.615 8.25 0.00 31.96 3.16
4037 9174 5.869579 TGGAGCTTCCAAGGATATACATTC 58.130 41.667 2.78 0.00 45.00 2.67
4041 9178 7.503902 GGAGCTTCCAAGGATATACATTCTTTT 59.496 37.037 0.00 0.00 36.28 2.27
4228 9507 7.769272 TTATGTGTTTCCTCTTTTGCTTTTG 57.231 32.000 0.00 0.00 0.00 2.44
4248 9599 3.678289 TGCTATGACAAGTGCAGATTGT 58.322 40.909 15.26 15.26 43.38 2.71
4324 9935 7.257003 TGTTCATCACCATAAAAATGATTCCG 58.743 34.615 0.00 0.00 30.58 4.30
4550 10169 9.868389 CCTTATTTCTGAAGTTTGCAAAAATTC 57.132 29.630 22.51 22.51 0.00 2.17
4639 10260 3.737355 GCACGGGGATTTGTACTAGTCTC 60.737 52.174 0.00 0.00 0.00 3.36
4668 10289 8.621286 CCTAATAATAAAGCACGGATTGACTTT 58.379 33.333 0.00 0.00 36.31 2.66
4671 10292 3.626028 AAAGCACGGATTGACTTTGTC 57.374 42.857 0.00 0.00 33.18 3.18
4673 10294 2.146342 AGCACGGATTGACTTTGTCAG 58.854 47.619 0.66 0.00 43.69 3.51
4679 10300 3.753272 CGGATTGACTTTGTCAGGTTCAT 59.247 43.478 0.66 0.00 43.69 2.57
4705 10326 5.120830 GTCACAATACGCTTTCTTCTCATGT 59.879 40.000 0.00 0.00 0.00 3.21
4706 10327 5.348724 TCACAATACGCTTTCTTCTCATGTC 59.651 40.000 0.00 0.00 0.00 3.06
4707 10328 5.120674 CACAATACGCTTTCTTCTCATGTCA 59.879 40.000 0.00 0.00 0.00 3.58
4709 10330 7.010460 CACAATACGCTTTCTTCTCATGTCATA 59.990 37.037 0.00 0.00 0.00 2.15
4711 10332 8.554528 CAATACGCTTTCTTCTCATGTCATAAT 58.445 33.333 0.00 0.00 0.00 1.28
4712 10333 9.764363 AATACGCTTTCTTCTCATGTCATAATA 57.236 29.630 0.00 0.00 0.00 0.98
4714 10335 6.199154 ACGCTTTCTTCTCATGTCATAATACG 59.801 38.462 0.00 0.00 0.00 3.06
4715 10336 6.358762 GCTTTCTTCTCATGTCATAATACGC 58.641 40.000 0.00 0.00 0.00 4.42
4717 10338 7.254590 GCTTTCTTCTCATGTCATAATACGCTT 60.255 37.037 0.00 0.00 0.00 4.68
4718 10339 8.492673 TTTCTTCTCATGTCATAATACGCTTT 57.507 30.769 0.00 0.00 0.00 3.51
4719 10340 8.492673 TTCTTCTCATGTCATAATACGCTTTT 57.507 30.769 0.00 0.00 0.00 2.27
4720 10341 9.594478 TTCTTCTCATGTCATAATACGCTTTTA 57.406 29.630 0.00 0.00 0.00 1.52
4721 10342 9.031360 TCTTCTCATGTCATAATACGCTTTTAC 57.969 33.333 0.00 0.00 0.00 2.01
4722 10343 8.710835 TTCTCATGTCATAATACGCTTTTACA 57.289 30.769 0.00 0.00 0.00 2.41
4723 10344 8.710835 TCTCATGTCATAATACGCTTTTACAA 57.289 30.769 0.00 0.00 0.00 2.41
4724 10345 9.325198 TCTCATGTCATAATACGCTTTTACAAT 57.675 29.630 0.00 0.00 0.00 2.71
4725 10346 9.935682 CTCATGTCATAATACGCTTTTACAATT 57.064 29.630 0.00 0.00 0.00 2.32
4735 10356 9.900710 AATACGCTTTTACAATTTGTATGAACA 57.099 25.926 9.95 0.00 32.20 3.18
4736 10357 9.900710 ATACGCTTTTACAATTTGTATGAACAA 57.099 25.926 9.95 0.00 43.85 2.83
4762 10383 6.942532 TCGTAATATAAACGAGGTGGTACT 57.057 37.500 8.67 0.00 43.90 2.73
4764 10385 8.445275 TCGTAATATAAACGAGGTGGTACTAA 57.555 34.615 8.67 0.00 43.90 2.24
4765 10386 9.066892 TCGTAATATAAACGAGGTGGTACTAAT 57.933 33.333 8.67 0.00 43.90 1.73
4772 10393 7.619964 AAACGAGGTGGTACTAATAATTTGG 57.380 36.000 0.00 0.00 0.00 3.28
4773 10394 5.677567 ACGAGGTGGTACTAATAATTTGGG 58.322 41.667 0.00 0.00 0.00 4.12
4774 10395 5.061179 CGAGGTGGTACTAATAATTTGGGG 58.939 45.833 0.00 0.00 0.00 4.96
4775 10396 5.397109 CGAGGTGGTACTAATAATTTGGGGT 60.397 44.000 0.00 0.00 0.00 4.95
4776 10397 6.009908 AGGTGGTACTAATAATTTGGGGTC 57.990 41.667 0.00 0.00 0.00 4.46
4777 10398 5.103813 AGGTGGTACTAATAATTTGGGGTCC 60.104 44.000 0.00 0.00 0.00 4.46
4778 10399 4.818005 GTGGTACTAATAATTTGGGGTCCG 59.182 45.833 0.00 0.00 0.00 4.79
4779 10400 3.817084 GGTACTAATAATTTGGGGTCCGC 59.183 47.826 0.00 0.00 0.00 5.54
4780 10401 3.655615 ACTAATAATTTGGGGTCCGCA 57.344 42.857 4.12 4.12 0.00 5.69
4781 10402 3.284617 ACTAATAATTTGGGGTCCGCAC 58.715 45.455 8.40 0.00 0.00 5.34
4782 10403 1.099689 AATAATTTGGGGTCCGCACG 58.900 50.000 8.40 0.00 0.00 5.34
4783 10404 0.034863 ATAATTTGGGGTCCGCACGT 60.035 50.000 8.40 0.00 0.00 4.49
4784 10405 0.674269 TAATTTGGGGTCCGCACGTC 60.674 55.000 8.40 0.00 0.00 4.34
4785 10406 3.912745 ATTTGGGGTCCGCACGTCC 62.913 63.158 8.40 0.00 0.00 4.79
4789 10410 4.309950 GGGTCCGCACGTCCTTGT 62.310 66.667 0.00 0.00 0.00 3.16
4790 10411 3.041940 GGTCCGCACGTCCTTGTG 61.042 66.667 0.00 0.00 42.81 3.33
4791 10412 3.041940 GTCCGCACGTCCTTGTGG 61.042 66.667 0.00 0.00 46.91 4.17
4794 10415 3.244105 CGCACGTCCTTGTGGAAG 58.756 61.111 0.00 0.00 45.18 3.46
4800 10421 2.663279 CGTCCTTGTGGAAGTTTTCG 57.337 50.000 0.00 0.00 45.18 3.46
4801 10422 1.937899 CGTCCTTGTGGAAGTTTTCGT 59.062 47.619 0.00 0.00 45.18 3.85
4802 10423 3.125316 CGTCCTTGTGGAAGTTTTCGTA 58.875 45.455 0.00 0.00 45.18 3.43
4803 10424 3.060070 CGTCCTTGTGGAAGTTTTCGTAC 60.060 47.826 0.00 0.00 45.18 3.67
4804 10425 3.060070 GTCCTTGTGGAAGTTTTCGTACG 60.060 47.826 9.53 9.53 45.18 3.67
4805 10426 2.867975 CCTTGTGGAAGTTTTCGTACGT 59.132 45.455 16.05 0.00 34.57 3.57
4806 10427 3.060070 CCTTGTGGAAGTTTTCGTACGTC 60.060 47.826 16.05 3.87 34.57 4.34
4807 10428 2.118683 TGTGGAAGTTTTCGTACGTCG 58.881 47.619 16.05 0.00 41.41 5.12
4808 10429 2.119457 GTGGAAGTTTTCGTACGTCGT 58.881 47.619 16.05 2.21 40.80 4.34
4809 10430 2.535574 GTGGAAGTTTTCGTACGTCGTT 59.464 45.455 16.05 3.17 40.80 3.85
4810 10431 2.788786 TGGAAGTTTTCGTACGTCGTTC 59.211 45.455 16.05 11.53 40.80 3.95
4811 10432 2.788786 GGAAGTTTTCGTACGTCGTTCA 59.211 45.455 16.05 0.00 40.80 3.18
4812 10433 3.426525 GGAAGTTTTCGTACGTCGTTCAT 59.573 43.478 16.05 0.00 40.80 2.57
4813 10434 4.432115 GGAAGTTTTCGTACGTCGTTCATC 60.432 45.833 16.05 7.05 40.80 2.92
4814 10435 2.982470 AGTTTTCGTACGTCGTTCATCC 59.018 45.455 16.05 0.00 40.80 3.51
4815 10436 1.981254 TTTCGTACGTCGTTCATCCC 58.019 50.000 16.05 0.00 40.80 3.85
4816 10437 1.167851 TTCGTACGTCGTTCATCCCT 58.832 50.000 16.05 0.00 40.80 4.20
4817 10438 0.448990 TCGTACGTCGTTCATCCCTG 59.551 55.000 16.05 0.00 40.80 4.45
4818 10439 0.524816 CGTACGTCGTTCATCCCTGG 60.525 60.000 7.22 0.00 34.52 4.45
4819 10440 0.804933 GTACGTCGTTCATCCCTGGC 60.805 60.000 1.78 0.00 0.00 4.85
4820 10441 0.968901 TACGTCGTTCATCCCTGGCT 60.969 55.000 1.78 0.00 0.00 4.75
4821 10442 1.811266 CGTCGTTCATCCCTGGCTG 60.811 63.158 0.00 0.00 0.00 4.85
4822 10443 1.296715 GTCGTTCATCCCTGGCTGT 59.703 57.895 0.00 0.00 0.00 4.40
4823 10444 0.741221 GTCGTTCATCCCTGGCTGTC 60.741 60.000 0.00 0.00 0.00 3.51
4824 10445 1.450312 CGTTCATCCCTGGCTGTCC 60.450 63.158 0.00 0.00 0.00 4.02
4825 10446 1.077429 GTTCATCCCTGGCTGTCCC 60.077 63.158 0.00 0.00 0.00 4.46
4826 10447 1.541118 TTCATCCCTGGCTGTCCCA 60.541 57.895 0.00 0.00 42.79 4.37
4827 10448 1.139498 TTCATCCCTGGCTGTCCCAA 61.139 55.000 0.00 0.00 44.81 4.12
4828 10449 1.379044 CATCCCTGGCTGTCCCAAC 60.379 63.158 0.00 0.00 44.81 3.77
4829 10450 2.971598 ATCCCTGGCTGTCCCAACG 61.972 63.158 0.00 0.00 44.81 4.10
4830 10451 3.636231 CCCTGGCTGTCCCAACGA 61.636 66.667 0.00 0.00 44.81 3.85
4831 10452 2.429930 CCTGGCTGTCCCAACGAA 59.570 61.111 0.00 0.00 44.81 3.85
4832 10453 1.672356 CCTGGCTGTCCCAACGAAG 60.672 63.158 0.00 0.00 44.81 3.79
4833 10454 2.281484 TGGCTGTCCCAACGAAGC 60.281 61.111 0.00 0.00 41.82 3.86
4834 10455 3.056328 GGCTGTCCCAACGAAGCC 61.056 66.667 0.00 0.00 35.20 4.35
4835 10456 3.056328 GCTGTCCCAACGAAGCCC 61.056 66.667 0.00 0.00 0.00 5.19
4836 10457 2.429930 CTGTCCCAACGAAGCCCA 59.570 61.111 0.00 0.00 0.00 5.36
4837 10458 1.966451 CTGTCCCAACGAAGCCCAC 60.966 63.158 0.00 0.00 0.00 4.61
4838 10459 2.397413 CTGTCCCAACGAAGCCCACT 62.397 60.000 0.00 0.00 0.00 4.00
4839 10460 1.122632 TGTCCCAACGAAGCCCACTA 61.123 55.000 0.00 0.00 0.00 2.74
4840 10461 0.252197 GTCCCAACGAAGCCCACTAT 59.748 55.000 0.00 0.00 0.00 2.12
4841 10462 0.251916 TCCCAACGAAGCCCACTATG 59.748 55.000 0.00 0.00 0.00 2.23
4842 10463 1.376609 CCCAACGAAGCCCACTATGC 61.377 60.000 0.00 0.00 0.00 3.14
4843 10464 1.376609 CCAACGAAGCCCACTATGCC 61.377 60.000 0.00 0.00 0.00 4.40
4844 10465 0.392998 CAACGAAGCCCACTATGCCT 60.393 55.000 0.00 0.00 0.00 4.75
4845 10466 0.107654 AACGAAGCCCACTATGCCTC 60.108 55.000 0.00 0.00 0.00 4.70
4846 10467 1.264749 ACGAAGCCCACTATGCCTCA 61.265 55.000 0.00 0.00 0.00 3.86
4847 10468 0.107703 CGAAGCCCACTATGCCTCAA 60.108 55.000 0.00 0.00 0.00 3.02
4848 10469 1.383523 GAAGCCCACTATGCCTCAAC 58.616 55.000 0.00 0.00 0.00 3.18
4849 10470 0.034089 AAGCCCACTATGCCTCAACC 60.034 55.000 0.00 0.00 0.00 3.77
4850 10471 1.819632 GCCCACTATGCCTCAACCG 60.820 63.158 0.00 0.00 0.00 4.44
4851 10472 1.153168 CCCACTATGCCTCAACCGG 60.153 63.158 0.00 0.00 0.00 5.28
4858 10479 2.190578 GCCTCAACCGGCTAGCAT 59.809 61.111 18.24 0.00 46.63 3.79
4859 10480 2.182842 GCCTCAACCGGCTAGCATG 61.183 63.158 18.24 9.17 46.63 4.06
4860 10481 1.524621 CCTCAACCGGCTAGCATGG 60.525 63.158 18.24 19.46 0.00 3.66
4861 10482 1.524621 CTCAACCGGCTAGCATGGG 60.525 63.158 24.22 19.70 0.00 4.00
4862 10483 3.211963 CAACCGGCTAGCATGGGC 61.212 66.667 24.22 4.26 39.32 5.36
4863 10484 4.506255 AACCGGCTAGCATGGGCC 62.506 66.667 24.22 0.00 39.64 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.154556 CACACATGCACATTGTCTGTATGA 59.845 41.667 10.79 0.00 35.91 2.15
11 12 3.250521 CACACACATGCACATTGTCTGTA 59.749 43.478 0.37 0.00 35.91 2.74
82 83 3.655276 AAGAAACCTTTGCAGCATCAG 57.345 42.857 0.00 0.00 0.00 2.90
83 84 4.022068 CCTAAAGAAACCTTTGCAGCATCA 60.022 41.667 0.00 0.00 35.63 3.07
84 85 4.218417 TCCTAAAGAAACCTTTGCAGCATC 59.782 41.667 0.00 0.00 35.63 3.91
85 86 4.021981 GTCCTAAAGAAACCTTTGCAGCAT 60.022 41.667 0.00 0.00 35.63 3.79
86 87 3.317993 GTCCTAAAGAAACCTTTGCAGCA 59.682 43.478 0.00 0.00 35.63 4.41
87 88 3.305403 GGTCCTAAAGAAACCTTTGCAGC 60.305 47.826 0.00 0.00 35.63 5.25
96 97 4.332819 CCATGTCGATGGTCCTAAAGAAAC 59.667 45.833 0.00 0.00 43.98 2.78
140 141 6.737720 TGTTCTGAATGTAGATGCTCCTAT 57.262 37.500 0.00 0.00 0.00 2.57
460 465 1.070445 TGTGCATTTGGGAAAGCAAGG 59.930 47.619 0.00 0.00 38.91 3.61
521 526 3.005472 GGGATCATGTGATGGCATTGAAG 59.995 47.826 0.00 0.00 34.37 3.02
788 805 6.405278 TTTCAAGGAAAATTCAGAGGGTTC 57.595 37.500 0.00 0.00 0.00 3.62
813 830 7.454380 ACCTTTGGGTCTCATTGATTCAAAATA 59.546 33.333 2.68 0.00 43.38 1.40
953 981 2.288825 GCGACGGGATTTGATGGAGATA 60.289 50.000 0.00 0.00 0.00 1.98
988 1016 4.155099 TGCCGGTAACATTGAACATTACTG 59.845 41.667 1.90 3.43 35.72 2.74
994 1022 2.422597 CTCTGCCGGTAACATTGAACA 58.577 47.619 1.90 0.00 0.00 3.18
1205 1242 7.699878 ACATACAGAGAACTAAGGGGAAAAAT 58.300 34.615 0.00 0.00 0.00 1.82
1807 2846 3.832527 ACTGTAACCAAGTTCAAGCCAT 58.167 40.909 0.00 0.00 0.00 4.40
2402 3894 5.359194 TGAAAACCAGGCCAAATTAAACA 57.641 34.783 5.01 0.00 0.00 2.83
2498 4023 0.689055 TTGCTGGCATGTCTGAGAGT 59.311 50.000 8.55 0.00 0.00 3.24
3015 6845 4.382147 GGTTTCCAAGTAACAAAGCACCAA 60.382 41.667 0.00 0.00 0.00 3.67
3227 7107 6.015519 CACCTCTAGTCTAGCAGCATTTCTAT 60.016 42.308 1.60 0.00 0.00 1.98
3859 8112 3.888930 TCTTTGACAAATCACCTTCACCC 59.111 43.478 0.05 0.00 33.38 4.61
3864 8117 7.830099 AGAATTCTCTTTGACAAATCACCTT 57.170 32.000 0.88 0.00 33.38 3.50
3898 8152 3.388024 CCCTGCTCACTGCCTATTAACTA 59.612 47.826 0.00 0.00 42.00 2.24
4041 9178 4.601406 ACCTCTTATAATTGGCAACCCA 57.399 40.909 0.00 0.00 40.06 4.51
4103 9335 0.756294 ATCACGTCAGAACCCACACA 59.244 50.000 0.00 0.00 0.00 3.72
4228 9507 3.438087 ACACAATCTGCACTTGTCATAGC 59.562 43.478 6.88 0.00 34.69 2.97
4404 10023 9.513906 TGTGTATGGAATAGTCTTTTGATCAAA 57.486 29.630 16.91 16.91 0.00 2.69
4444 10063 1.361204 TGACCCATTTCAGCTCTCCA 58.639 50.000 0.00 0.00 0.00 3.86
4639 10260 6.934645 TCAATCCGTGCTTTATTATTAGGGAG 59.065 38.462 0.00 0.00 0.00 4.30
4668 10289 2.900716 TTGTGACGATGAACCTGACA 57.099 45.000 0.00 0.00 0.00 3.58
4671 10292 2.029244 GCGTATTGTGACGATGAACCTG 59.971 50.000 0.00 0.00 45.82 4.00
4673 10294 2.268298 AGCGTATTGTGACGATGAACC 58.732 47.619 0.00 0.00 45.82 3.62
4679 10300 3.909430 AGAAGAAAGCGTATTGTGACGA 58.091 40.909 0.00 0.00 45.82 4.20
4709 10330 9.900710 TGTTCATACAAATTGTAAAAGCGTATT 57.099 25.926 10.09 0.00 36.31 1.89
4711 10332 9.731819 TTTGTTCATACAAATTGTAAAAGCGTA 57.268 25.926 10.09 0.00 46.46 4.42
4712 10333 8.635877 TTTGTTCATACAAATTGTAAAAGCGT 57.364 26.923 10.09 0.00 46.46 5.07
4730 10351 9.153721 ACCTCGTTTATATTACGATTTTGTTCA 57.846 29.630 11.61 0.00 45.76 3.18
4731 10352 9.417284 CACCTCGTTTATATTACGATTTTGTTC 57.583 33.333 11.61 0.00 45.76 3.18
4732 10353 8.392612 CCACCTCGTTTATATTACGATTTTGTT 58.607 33.333 11.61 0.00 45.76 2.83
4733 10354 7.550196 ACCACCTCGTTTATATTACGATTTTGT 59.450 33.333 11.61 6.48 45.76 2.83
4734 10355 7.912383 ACCACCTCGTTTATATTACGATTTTG 58.088 34.615 11.61 9.38 45.76 2.44
4735 10356 9.034544 GTACCACCTCGTTTATATTACGATTTT 57.965 33.333 11.61 0.27 45.76 1.82
4736 10357 8.416329 AGTACCACCTCGTTTATATTACGATTT 58.584 33.333 11.61 2.17 45.76 2.17
4737 10358 7.945134 AGTACCACCTCGTTTATATTACGATT 58.055 34.615 11.61 2.44 45.76 3.34
4738 10359 7.516198 AGTACCACCTCGTTTATATTACGAT 57.484 36.000 11.61 2.35 45.76 3.73
4739 10360 6.942532 AGTACCACCTCGTTTATATTACGA 57.057 37.500 10.95 10.95 44.88 3.43
4746 10367 9.333724 CCAAATTATTAGTACCACCTCGTTTAT 57.666 33.333 0.00 0.00 0.00 1.40
4747 10368 7.769970 CCCAAATTATTAGTACCACCTCGTTTA 59.230 37.037 0.00 0.00 0.00 2.01
4748 10369 6.600427 CCCAAATTATTAGTACCACCTCGTTT 59.400 38.462 0.00 0.00 0.00 3.60
4749 10370 6.117488 CCCAAATTATTAGTACCACCTCGTT 58.883 40.000 0.00 0.00 0.00 3.85
4750 10371 5.397109 CCCCAAATTATTAGTACCACCTCGT 60.397 44.000 0.00 0.00 0.00 4.18
4751 10372 5.061179 CCCCAAATTATTAGTACCACCTCG 58.939 45.833 0.00 0.00 0.00 4.63
4752 10373 6.009908 ACCCCAAATTATTAGTACCACCTC 57.990 41.667 0.00 0.00 0.00 3.85
4753 10374 5.103813 GGACCCCAAATTATTAGTACCACCT 60.104 44.000 0.00 0.00 0.00 4.00
4754 10375 5.135383 GGACCCCAAATTATTAGTACCACC 58.865 45.833 0.00 0.00 0.00 4.61
4755 10376 4.818005 CGGACCCCAAATTATTAGTACCAC 59.182 45.833 0.00 0.00 0.00 4.16
4756 10377 4.686670 GCGGACCCCAAATTATTAGTACCA 60.687 45.833 0.00 0.00 0.00 3.25
4757 10378 3.817084 GCGGACCCCAAATTATTAGTACC 59.183 47.826 0.00 0.00 0.00 3.34
4758 10379 4.274214 GTGCGGACCCCAAATTATTAGTAC 59.726 45.833 0.00 0.00 0.00 2.73
4759 10380 4.453751 GTGCGGACCCCAAATTATTAGTA 58.546 43.478 0.00 0.00 0.00 1.82
4760 10381 3.284617 GTGCGGACCCCAAATTATTAGT 58.715 45.455 0.00 0.00 0.00 2.24
4761 10382 2.289547 CGTGCGGACCCCAAATTATTAG 59.710 50.000 0.00 0.00 0.00 1.73
4762 10383 2.290464 CGTGCGGACCCCAAATTATTA 58.710 47.619 0.00 0.00 0.00 0.98
4763 10384 1.099689 CGTGCGGACCCCAAATTATT 58.900 50.000 0.00 0.00 0.00 1.40
4764 10385 0.034863 ACGTGCGGACCCCAAATTAT 60.035 50.000 0.00 0.00 0.00 1.28
4765 10386 0.674269 GACGTGCGGACCCCAAATTA 60.674 55.000 0.00 0.00 0.00 1.40
4766 10387 1.969589 GACGTGCGGACCCCAAATT 60.970 57.895 0.00 0.00 0.00 1.82
4767 10388 2.359478 GACGTGCGGACCCCAAAT 60.359 61.111 0.00 0.00 0.00 2.32
4768 10389 4.629523 GGACGTGCGGACCCCAAA 62.630 66.667 0.00 0.00 0.00 3.28
4772 10393 4.309950 ACAAGGACGTGCGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
4773 10394 3.041940 CACAAGGACGTGCGGACC 61.042 66.667 0.00 0.00 0.00 4.46
4774 10395 2.981977 TTCCACAAGGACGTGCGGAC 62.982 60.000 0.00 0.00 45.73 4.79
4775 10396 2.709125 CTTCCACAAGGACGTGCGGA 62.709 60.000 0.00 0.00 45.73 5.54
4776 10397 2.280524 TTCCACAAGGACGTGCGG 60.281 61.111 0.00 0.29 45.73 5.69
4777 10398 1.157870 AACTTCCACAAGGACGTGCG 61.158 55.000 0.00 0.00 44.87 5.34
4778 10399 1.021968 AAACTTCCACAAGGACGTGC 58.978 50.000 0.00 0.00 44.87 5.34
4779 10400 2.286184 CGAAAACTTCCACAAGGACGTG 60.286 50.000 0.00 0.00 44.87 4.49
4781 10402 1.937899 ACGAAAACTTCCACAAGGACG 59.062 47.619 0.00 0.00 45.73 4.79
4782 10403 3.060070 CGTACGAAAACTTCCACAAGGAC 60.060 47.826 10.44 0.00 45.73 3.85
4783 10404 3.125316 CGTACGAAAACTTCCACAAGGA 58.875 45.455 10.44 0.00 43.93 3.36
4784 10405 2.867975 ACGTACGAAAACTTCCACAAGG 59.132 45.455 24.41 0.00 33.37 3.61
4785 10406 3.361339 CGACGTACGAAAACTTCCACAAG 60.361 47.826 24.41 0.00 45.77 3.16
4786 10407 2.535166 CGACGTACGAAAACTTCCACAA 59.465 45.455 24.41 0.00 45.77 3.33
4787 10408 2.118683 CGACGTACGAAAACTTCCACA 58.881 47.619 24.41 0.00 45.77 4.17
4788 10409 2.119457 ACGACGTACGAAAACTTCCAC 58.881 47.619 24.41 0.00 45.77 4.02
4789 10410 2.490328 ACGACGTACGAAAACTTCCA 57.510 45.000 24.41 0.00 45.77 3.53
4790 10411 2.788786 TGAACGACGTACGAAAACTTCC 59.211 45.455 24.41 3.73 45.77 3.46
4791 10412 4.432115 GGATGAACGACGTACGAAAACTTC 60.432 45.833 24.41 14.01 45.77 3.01
4792 10413 3.426525 GGATGAACGACGTACGAAAACTT 59.573 43.478 24.41 5.25 45.77 2.66
4793 10414 2.982470 GGATGAACGACGTACGAAAACT 59.018 45.455 24.41 0.00 45.77 2.66
4794 10415 2.091122 GGGATGAACGACGTACGAAAAC 59.909 50.000 24.41 9.45 45.77 2.43
4795 10416 2.030007 AGGGATGAACGACGTACGAAAA 60.030 45.455 24.41 1.26 45.77 2.29
4796 10417 1.541147 AGGGATGAACGACGTACGAAA 59.459 47.619 24.41 0.51 45.77 3.46
4797 10418 1.135603 CAGGGATGAACGACGTACGAA 60.136 52.381 24.41 0.13 45.77 3.85
4798 10419 0.448990 CAGGGATGAACGACGTACGA 59.551 55.000 24.41 0.00 45.77 3.43
4800 10421 0.804933 GCCAGGGATGAACGACGTAC 60.805 60.000 0.00 0.00 0.00 3.67
4801 10422 0.968901 AGCCAGGGATGAACGACGTA 60.969 55.000 0.00 0.00 0.00 3.57
4802 10423 2.264794 GCCAGGGATGAACGACGT 59.735 61.111 0.00 0.00 0.00 4.34
4803 10424 1.811266 CAGCCAGGGATGAACGACG 60.811 63.158 0.00 0.00 32.62 5.12
4804 10425 0.741221 GACAGCCAGGGATGAACGAC 60.741 60.000 11.05 0.00 35.26 4.34
4805 10426 1.596934 GACAGCCAGGGATGAACGA 59.403 57.895 11.05 0.00 35.26 3.85
4806 10427 1.450312 GGACAGCCAGGGATGAACG 60.450 63.158 11.05 0.00 35.26 3.95
4807 10428 1.077429 GGGACAGCCAGGGATGAAC 60.077 63.158 11.05 4.02 35.26 3.18
4808 10429 1.139498 TTGGGACAGCCAGGGATGAA 61.139 55.000 11.05 0.00 42.39 2.57
4809 10430 1.541118 TTGGGACAGCCAGGGATGA 60.541 57.895 11.05 0.00 42.39 2.92
4810 10431 1.379044 GTTGGGACAGCCAGGGATG 60.379 63.158 1.29 1.29 42.39 3.51
4811 10432 2.971598 CGTTGGGACAGCCAGGGAT 61.972 63.158 0.00 0.00 42.39 3.85
4812 10433 3.636231 CGTTGGGACAGCCAGGGA 61.636 66.667 0.00 0.00 42.39 4.20
4813 10434 3.190738 TTCGTTGGGACAGCCAGGG 62.191 63.158 0.00 0.00 42.39 4.45
4814 10435 1.672356 CTTCGTTGGGACAGCCAGG 60.672 63.158 0.00 0.00 42.39 4.45
4815 10436 2.328099 GCTTCGTTGGGACAGCCAG 61.328 63.158 0.00 0.00 42.39 4.85
4816 10437 2.281484 GCTTCGTTGGGACAGCCA 60.281 61.111 0.00 0.00 42.39 4.75
4817 10438 3.056328 GGCTTCGTTGGGACAGCC 61.056 66.667 0.00 0.00 42.39 4.85
4818 10439 3.056328 GGGCTTCGTTGGGACAGC 61.056 66.667 0.00 0.00 42.39 4.40
4819 10440 1.966451 GTGGGCTTCGTTGGGACAG 60.966 63.158 0.00 0.00 42.39 3.51
4820 10441 1.122632 TAGTGGGCTTCGTTGGGACA 61.123 55.000 0.00 0.00 0.00 4.02
4821 10442 0.252197 ATAGTGGGCTTCGTTGGGAC 59.748 55.000 0.00 0.00 0.00 4.46
4822 10443 0.251916 CATAGTGGGCTTCGTTGGGA 59.748 55.000 0.00 0.00 0.00 4.37
4823 10444 1.376609 GCATAGTGGGCTTCGTTGGG 61.377 60.000 0.00 0.00 0.00 4.12
4824 10445 1.376609 GGCATAGTGGGCTTCGTTGG 61.377 60.000 0.00 0.00 0.00 3.77
4825 10446 0.392998 AGGCATAGTGGGCTTCGTTG 60.393 55.000 0.00 0.00 41.46 4.10
4826 10447 0.107654 GAGGCATAGTGGGCTTCGTT 60.108 55.000 0.00 0.00 44.62 3.85
4827 10448 1.264749 TGAGGCATAGTGGGCTTCGT 61.265 55.000 0.00 0.00 44.62 3.85
4828 10449 0.107703 TTGAGGCATAGTGGGCTTCG 60.108 55.000 0.00 0.00 44.62 3.79
4829 10450 1.383523 GTTGAGGCATAGTGGGCTTC 58.616 55.000 0.00 0.00 44.62 3.86
4830 10451 0.034089 GGTTGAGGCATAGTGGGCTT 60.034 55.000 0.00 0.00 44.62 4.35
4832 10453 1.819632 CGGTTGAGGCATAGTGGGC 60.820 63.158 0.00 0.00 0.00 5.36
4833 10454 1.153168 CCGGTTGAGGCATAGTGGG 60.153 63.158 0.00 0.00 0.00 4.61
4834 10455 4.540153 CCGGTTGAGGCATAGTGG 57.460 61.111 0.00 0.00 0.00 4.00
4842 10463 1.524621 CCATGCTAGCCGGTTGAGG 60.525 63.158 13.29 0.00 0.00 3.86
4843 10464 1.524621 CCCATGCTAGCCGGTTGAG 60.525 63.158 13.29 0.00 0.00 3.02
4844 10465 2.589540 CCCATGCTAGCCGGTTGA 59.410 61.111 13.29 0.00 0.00 3.18
4845 10466 3.211963 GCCCATGCTAGCCGGTTG 61.212 66.667 13.29 4.75 33.53 3.77
4846 10467 4.506255 GGCCCATGCTAGCCGGTT 62.506 66.667 13.29 0.00 39.87 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.