Multiple sequence alignment - TraesCS2A01G053300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G053300 chr2A 100.000 4121 0 0 1 4121 21276658 21272538 0.000000e+00 7611.0
1 TraesCS2A01G053300 chr2A 93.667 979 50 4 1921 2892 9388538 9389511 0.000000e+00 1454.0
2 TraesCS2A01G053300 chr2A 93.361 964 50 6 1940 2892 9841327 9842287 0.000000e+00 1413.0
3 TraesCS2A01G053300 chr2A 97.055 747 22 0 1185 1931 9838779 9839525 0.000000e+00 1258.0
4 TraesCS2A01G053300 chr2A 90.951 652 47 9 2894 3537 9389544 9390191 0.000000e+00 867.0
5 TraesCS2A01G053300 chr2A 90.798 652 48 9 2894 3537 9842320 9842967 0.000000e+00 861.0
6 TraesCS2A01G053300 chr2A 83.632 837 119 14 1040 1867 682635637 682634810 0.000000e+00 771.0
7 TraesCS2A01G053300 chr2A 83.564 651 84 10 2207 2847 682634554 682633917 4.590000e-164 588.0
8 TraesCS2A01G053300 chr2A 77.185 881 143 33 1141 2013 5927740 5928570 1.040000e-125 460.0
9 TraesCS2A01G053300 chr2A 83.514 370 44 10 451 818 9138844 9138490 3.070000e-86 329.0
10 TraesCS2A01G053300 chr2A 92.029 138 11 0 1008 1145 9138194 9138057 1.170000e-45 195.0
11 TraesCS2A01G053300 chr2A 77.313 335 56 15 451 779 9838127 9838447 3.270000e-41 180.0
12 TraesCS2A01G053300 chr2A 83.598 189 12 10 24 205 9837944 9838120 4.260000e-35 159.0
13 TraesCS2A01G053300 chr2A 92.381 105 8 0 1141 1245 9137633 9137529 2.570000e-32 150.0
14 TraesCS2A01G053300 chr2A 90.909 88 8 0 829 916 9138338 9138251 7.240000e-23 119.0
15 TraesCS2A01G053300 chr2D 91.550 1858 132 11 1008 2864 9884661 9882828 0.000000e+00 2538.0
16 TraesCS2A01G053300 chr2D 92.507 694 37 10 2863 3550 9882669 9881985 0.000000e+00 979.0
17 TraesCS2A01G053300 chr2D 86.992 492 41 13 3554 4030 20673767 20673284 2.180000e-147 532.0
18 TraesCS2A01G053300 chr2D 84.502 271 42 0 1094 1364 19636773 19637043 6.790000e-68 268.0
19 TraesCS2A01G053300 chr2D 82.278 316 45 10 451 765 9885315 9885010 3.160000e-66 263.0
20 TraesCS2A01G053300 chr2D 90.654 107 10 0 4010 4116 20671636 20671530 4.290000e-30 143.0
21 TraesCS2A01G053300 chr2D 88.000 50 5 1 708 756 26917499 26917450 1.600000e-04 58.4
22 TraesCS2A01G053300 chr7D 80.761 946 158 12 1080 2019 177876599 177877526 0.000000e+00 717.0
23 TraesCS2A01G053300 chr7D 83.728 633 101 2 2207 2838 177877596 177878227 7.620000e-167 597.0
24 TraesCS2A01G053300 chr7D 88.194 144 15 2 3408 3550 511228007 511228149 1.970000e-38 171.0
25 TraesCS2A01G053300 chr7D 88.489 139 15 1 3413 3550 199607137 199606999 2.550000e-37 167.0
26 TraesCS2A01G053300 chr7D 88.489 139 15 1 3413 3550 485106459 485106597 2.550000e-37 167.0
27 TraesCS2A01G053300 chr7D 97.059 34 1 0 721 754 562202352 562202319 1.600000e-04 58.4
28 TraesCS2A01G053300 chr7B 84.676 633 95 2 2207 2838 143811062 143811693 7.520000e-177 630.0
29 TraesCS2A01G053300 chr7B 88.194 144 15 2 3408 3550 540063194 540063336 1.970000e-38 171.0
30 TraesCS2A01G053300 chr7B 92.857 56 3 1 313 368 735927355 735927301 3.410000e-11 80.5
31 TraesCS2A01G053300 chr7B 96.875 32 0 1 723 754 692828819 692828849 7.000000e-03 52.8
32 TraesCS2A01G053300 chr3A 80.387 826 133 19 1041 1850 46584135 46583323 5.890000e-168 601.0
33 TraesCS2A01G053300 chr3A 87.413 143 16 2 3409 3550 17857201 17857342 3.300000e-36 163.0
34 TraesCS2A01G053300 chr3A 90.909 55 5 0 708 762 519762867 519762921 1.590000e-09 75.0
35 TraesCS2A01G053300 chr2B 86.400 250 21 6 3779 4026 33916810 33916572 1.140000e-65 261.0
36 TraesCS2A01G053300 chr2B 88.406 138 15 1 3414 3550 680078426 680078289 9.160000e-37 165.0
37 TraesCS2A01G053300 chr3D 92.857 56 3 1 313 368 500858476 500858422 3.410000e-11 80.5
38 TraesCS2A01G053300 chr6A 90.385 52 5 0 708 759 102563168 102563117 7.390000e-08 69.4
39 TraesCS2A01G053300 chr1A 90.385 52 5 0 708 759 444678302 444678251 7.390000e-08 69.4
40 TraesCS2A01G053300 chr3B 93.182 44 3 0 708 751 386524301 386524344 9.560000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G053300 chr2A 21272538 21276658 4120 True 7611.0 7611 100.000000 1 4121 1 chr2A.!!$R1 4120
1 TraesCS2A01G053300 chr2A 9388538 9390191 1653 False 1160.5 1454 92.309000 1921 3537 2 chr2A.!!$F2 1616
2 TraesCS2A01G053300 chr2A 9837944 9842967 5023 False 774.2 1413 88.425000 24 3537 5 chr2A.!!$F3 3513
3 TraesCS2A01G053300 chr2A 682633917 682635637 1720 True 679.5 771 83.598000 1040 2847 2 chr2A.!!$R3 1807
4 TraesCS2A01G053300 chr2A 5927740 5928570 830 False 460.0 460 77.185000 1141 2013 1 chr2A.!!$F1 872
5 TraesCS2A01G053300 chr2D 9881985 9885315 3330 True 1260.0 2538 88.778333 451 3550 3 chr2D.!!$R2 3099
6 TraesCS2A01G053300 chr2D 20671530 20673767 2237 True 337.5 532 88.823000 3554 4116 2 chr2D.!!$R3 562
7 TraesCS2A01G053300 chr7D 177876599 177878227 1628 False 657.0 717 82.244500 1080 2838 2 chr7D.!!$F3 1758
8 TraesCS2A01G053300 chr7B 143811062 143811693 631 False 630.0 630 84.676000 2207 2838 1 chr7B.!!$F1 631
9 TraesCS2A01G053300 chr3A 46583323 46584135 812 True 601.0 601 80.387000 1041 1850 1 chr3A.!!$R1 809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.179059 TCAAAGGTCAAGAGCGTGCA 60.179 50.0 0.00 0.00 0.00 4.57 F
265 269 0.255890 AAGCCGCACCCAGTCAATAT 59.744 50.0 0.00 0.00 0.00 1.28 F
1055 1251 0.034059 CCTCCAGTCGCCATGGATAC 59.966 60.0 18.40 12.48 45.64 2.24 F
1875 2116 0.757188 ATGCCTCGGCTACTGCTACT 60.757 55.0 9.65 0.00 42.51 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1004 1200 0.599558 CGGTTGAACTCGGTACTGGA 59.400 55.0 0.85 0.0 0.00 3.86 R
2238 4294 0.107703 CCCATTCTAGCGTGGAAGCA 60.108 55.0 13.09 0.0 37.72 3.91 R
2483 4542 0.250338 GATCATTACGGAGGTGCCCC 60.250 60.0 0.00 0.0 0.00 5.80 R
3782 6058 0.391228 TCCTACACACACGCACACAT 59.609 50.0 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.904136 AAATCAAAGGTCAAGAGCGTG 57.096 42.857 0.00 0.00 0.00 5.34
21 22 1.160137 ATCAAAGGTCAAGAGCGTGC 58.840 50.000 0.00 0.00 0.00 5.34
22 23 0.179059 TCAAAGGTCAAGAGCGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
23 24 0.877071 CAAAGGTCAAGAGCGTGCAT 59.123 50.000 0.00 0.00 0.00 3.96
24 25 0.877071 AAAGGTCAAGAGCGTGCATG 59.123 50.000 0.09 0.09 0.00 4.06
25 26 0.957395 AAGGTCAAGAGCGTGCATGG 60.957 55.000 8.27 0.00 0.00 3.66
26 27 1.375908 GGTCAAGAGCGTGCATGGA 60.376 57.895 8.27 0.00 0.00 3.41
27 28 0.955428 GGTCAAGAGCGTGCATGGAA 60.955 55.000 8.27 0.00 0.00 3.53
28 29 1.089920 GTCAAGAGCGTGCATGGAAT 58.910 50.000 8.27 0.00 0.00 3.01
29 30 2.279741 GTCAAGAGCGTGCATGGAATA 58.720 47.619 8.27 0.00 0.00 1.75
30 31 2.677836 GTCAAGAGCGTGCATGGAATAA 59.322 45.455 8.27 0.00 0.00 1.40
31 32 2.938451 TCAAGAGCGTGCATGGAATAAG 59.062 45.455 8.27 0.00 0.00 1.73
32 33 2.938451 CAAGAGCGTGCATGGAATAAGA 59.062 45.455 8.27 0.00 0.00 2.10
33 34 3.482156 AGAGCGTGCATGGAATAAGAT 57.518 42.857 8.27 0.00 0.00 2.40
34 35 3.813443 AGAGCGTGCATGGAATAAGATT 58.187 40.909 8.27 0.00 0.00 2.40
35 36 3.562973 AGAGCGTGCATGGAATAAGATTG 59.437 43.478 8.27 0.00 0.00 2.67
36 37 2.620115 AGCGTGCATGGAATAAGATTGG 59.380 45.455 8.27 0.00 0.00 3.16
37 38 2.618241 GCGTGCATGGAATAAGATTGGA 59.382 45.455 8.27 0.00 0.00 3.53
38 39 3.066621 GCGTGCATGGAATAAGATTGGAA 59.933 43.478 8.27 0.00 0.00 3.53
39 40 4.439974 GCGTGCATGGAATAAGATTGGAAA 60.440 41.667 8.27 0.00 0.00 3.13
71 72 2.810274 GCGTGCAATAGATGTGATGGAT 59.190 45.455 0.00 0.00 0.00 3.41
116 120 4.841443 TGCTTGAAGAAGACGTGTACTA 57.159 40.909 0.00 0.00 0.00 1.82
117 121 5.386958 TGCTTGAAGAAGACGTGTACTAT 57.613 39.130 0.00 0.00 0.00 2.12
132 136 0.639392 ACTATCCCTCCAGTCCAGCT 59.361 55.000 0.00 0.00 0.00 4.24
133 137 1.008938 ACTATCCCTCCAGTCCAGCTT 59.991 52.381 0.00 0.00 0.00 3.74
136 140 1.920325 CCCTCCAGTCCAGCTTGGA 60.920 63.158 4.80 4.80 45.98 3.53
143 147 3.905454 TCCAGCTTGGAGCCTGAA 58.095 55.556 1.25 0.00 42.67 3.02
144 148 2.154139 TCCAGCTTGGAGCCTGAAA 58.846 52.632 1.25 0.00 42.67 2.69
146 150 1.133513 TCCAGCTTGGAGCCTGAAAAA 60.134 47.619 1.25 0.00 42.67 1.94
205 209 6.229733 ACATAAAGGATCTTGATGCTCTAGC 58.770 40.000 5.16 0.00 42.50 3.42
206 210 6.043012 ACATAAAGGATCTTGATGCTCTAGCT 59.957 38.462 5.16 0.00 42.66 3.32
207 211 7.234371 ACATAAAGGATCTTGATGCTCTAGCTA 59.766 37.037 5.16 0.00 42.66 3.32
208 212 5.726980 AAGGATCTTGATGCTCTAGCTAG 57.273 43.478 15.01 15.01 42.66 3.42
210 214 3.195396 GGATCTTGATGCTCTAGCTAGGG 59.805 52.174 20.58 18.80 42.66 3.53
211 215 3.320610 TCTTGATGCTCTAGCTAGGGT 57.679 47.619 21.71 2.69 42.66 4.34
212 216 3.647636 TCTTGATGCTCTAGCTAGGGTT 58.352 45.455 21.71 10.00 42.66 4.11
213 217 3.386078 TCTTGATGCTCTAGCTAGGGTTG 59.614 47.826 21.71 10.27 42.66 3.77
214 218 2.752030 TGATGCTCTAGCTAGGGTTGT 58.248 47.619 21.71 8.24 42.66 3.32
215 219 3.107601 TGATGCTCTAGCTAGGGTTGTT 58.892 45.455 21.71 4.64 42.66 2.83
216 220 3.118629 TGATGCTCTAGCTAGGGTTGTTG 60.119 47.826 21.71 4.95 42.66 3.33
217 221 2.257207 TGCTCTAGCTAGGGTTGTTGT 58.743 47.619 21.71 0.00 42.66 3.32
218 222 3.437213 TGCTCTAGCTAGGGTTGTTGTA 58.563 45.455 21.71 0.00 42.66 2.41
219 223 3.194968 TGCTCTAGCTAGGGTTGTTGTAC 59.805 47.826 21.71 3.25 42.66 2.90
220 224 3.194968 GCTCTAGCTAGGGTTGTTGTACA 59.805 47.826 21.71 0.00 38.21 2.90
221 225 4.322499 GCTCTAGCTAGGGTTGTTGTACAA 60.322 45.833 21.71 3.59 35.29 2.41
222 226 5.627040 GCTCTAGCTAGGGTTGTTGTACAAT 60.627 44.000 21.71 0.00 38.03 2.71
223 227 6.406624 GCTCTAGCTAGGGTTGTTGTACAATA 60.407 42.308 21.71 6.22 38.03 1.90
224 228 6.870769 TCTAGCTAGGGTTGTTGTACAATAC 58.129 40.000 20.58 12.59 40.59 1.89
225 229 5.757099 AGCTAGGGTTGTTGTACAATACT 57.243 39.130 12.26 5.47 40.59 2.12
226 230 6.862469 AGCTAGGGTTGTTGTACAATACTA 57.138 37.500 12.26 6.33 40.59 1.82
227 231 6.875076 AGCTAGGGTTGTTGTACAATACTAG 58.125 40.000 12.26 15.49 42.97 2.57
229 233 5.757099 AGGGTTGTTGTACAATACTAGCT 57.243 39.130 12.26 0.00 40.59 3.32
230 234 6.123045 AGGGTTGTTGTACAATACTAGCTT 57.877 37.500 12.26 1.09 40.59 3.74
231 235 7.248743 AGGGTTGTTGTACAATACTAGCTTA 57.751 36.000 12.26 0.00 40.59 3.09
232 236 7.328737 AGGGTTGTTGTACAATACTAGCTTAG 58.671 38.462 12.26 0.00 40.59 2.18
233 237 6.036844 GGGTTGTTGTACAATACTAGCTTAGC 59.963 42.308 12.26 0.00 40.59 3.09
234 238 6.036844 GGTTGTTGTACAATACTAGCTTAGCC 59.963 42.308 12.26 0.00 40.59 3.93
235 239 6.540438 TGTTGTACAATACTAGCTTAGCCT 57.460 37.500 12.26 0.00 0.00 4.58
236 240 6.338146 TGTTGTACAATACTAGCTTAGCCTG 58.662 40.000 12.26 0.00 0.00 4.85
237 241 6.070995 TGTTGTACAATACTAGCTTAGCCTGT 60.071 38.462 12.26 2.63 0.00 4.00
238 242 5.902681 TGTACAATACTAGCTTAGCCTGTG 58.097 41.667 0.00 0.00 0.00 3.66
239 243 3.798202 ACAATACTAGCTTAGCCTGTGC 58.202 45.455 0.00 0.00 37.95 4.57
240 244 3.134458 CAATACTAGCTTAGCCTGTGCC 58.866 50.000 0.00 0.00 38.69 5.01
241 245 0.744874 TACTAGCTTAGCCTGTGCCG 59.255 55.000 0.00 0.00 38.69 5.69
242 246 1.884926 CTAGCTTAGCCTGTGCCGC 60.885 63.158 0.00 0.00 38.69 6.53
243 247 3.716539 TAGCTTAGCCTGTGCCGCG 62.717 63.158 0.00 0.00 38.69 6.46
262 266 2.594303 CAAGCCGCACCCAGTCAA 60.594 61.111 0.00 0.00 0.00 3.18
263 267 1.973281 CAAGCCGCACCCAGTCAAT 60.973 57.895 0.00 0.00 0.00 2.57
264 268 0.676466 CAAGCCGCACCCAGTCAATA 60.676 55.000 0.00 0.00 0.00 1.90
265 269 0.255890 AAGCCGCACCCAGTCAATAT 59.744 50.000 0.00 0.00 0.00 1.28
266 270 0.464373 AGCCGCACCCAGTCAATATG 60.464 55.000 0.00 0.00 0.00 1.78
267 271 0.748005 GCCGCACCCAGTCAATATGT 60.748 55.000 0.00 0.00 0.00 2.29
268 272 1.750193 CCGCACCCAGTCAATATGTT 58.250 50.000 0.00 0.00 0.00 2.71
269 273 2.912771 CCGCACCCAGTCAATATGTTA 58.087 47.619 0.00 0.00 0.00 2.41
270 274 3.476552 CCGCACCCAGTCAATATGTTAT 58.523 45.455 0.00 0.00 0.00 1.89
271 275 3.250762 CCGCACCCAGTCAATATGTTATG 59.749 47.826 0.00 0.00 0.00 1.90
272 276 3.876914 CGCACCCAGTCAATATGTTATGT 59.123 43.478 0.00 0.00 0.00 2.29
273 277 5.053811 CGCACCCAGTCAATATGTTATGTA 58.946 41.667 0.00 0.00 0.00 2.29
274 278 5.700832 CGCACCCAGTCAATATGTTATGTAT 59.299 40.000 0.00 0.00 0.00 2.29
275 279 6.871492 CGCACCCAGTCAATATGTTATGTATA 59.129 38.462 0.00 0.00 0.00 1.47
276 280 7.549134 CGCACCCAGTCAATATGTTATGTATAT 59.451 37.037 0.00 0.00 0.00 0.86
277 281 9.884636 GCACCCAGTCAATATGTTATGTATATA 57.115 33.333 0.00 0.00 0.00 0.86
315 319 9.906660 TTTATTGTGTGTGATGGAAAATAAGTC 57.093 29.630 0.00 0.00 0.00 3.01
316 320 7.765695 ATTGTGTGTGATGGAAAATAAGTCT 57.234 32.000 0.00 0.00 0.00 3.24
317 321 7.581213 TTGTGTGTGATGGAAAATAAGTCTT 57.419 32.000 0.00 0.00 0.00 3.01
318 322 8.684386 TTGTGTGTGATGGAAAATAAGTCTTA 57.316 30.769 0.00 0.00 0.00 2.10
319 323 8.862325 TGTGTGTGATGGAAAATAAGTCTTAT 57.138 30.769 0.00 0.00 0.00 1.73
320 324 8.729756 TGTGTGTGATGGAAAATAAGTCTTATG 58.270 33.333 5.86 0.00 0.00 1.90
321 325 8.946085 GTGTGTGATGGAAAATAAGTCTTATGA 58.054 33.333 5.86 0.00 0.00 2.15
322 326 9.166173 TGTGTGATGGAAAATAAGTCTTATGAG 57.834 33.333 5.86 0.00 0.00 2.90
323 327 8.125448 GTGTGATGGAAAATAAGTCTTATGAGC 58.875 37.037 5.86 0.00 0.00 4.26
324 328 7.828717 TGTGATGGAAAATAAGTCTTATGAGCA 59.171 33.333 5.86 0.00 0.00 4.26
325 329 8.844244 GTGATGGAAAATAAGTCTTATGAGCAT 58.156 33.333 5.86 0.00 0.00 3.79
337 341 8.143673 AGTCTTATGAGCATATGATATGTGGT 57.856 34.615 13.48 0.00 34.75 4.16
338 342 8.256605 AGTCTTATGAGCATATGATATGTGGTC 58.743 37.037 13.48 6.35 45.39 4.02
345 349 8.783833 GAGCATATGATATGTGGTCATTACTT 57.216 34.615 13.48 0.00 44.80 2.24
346 350 9.224267 GAGCATATGATATGTGGTCATTACTTT 57.776 33.333 13.48 0.00 44.80 2.66
347 351 9.006839 AGCATATGATATGTGGTCATTACTTTG 57.993 33.333 13.48 0.00 37.48 2.77
348 352 8.786898 GCATATGATATGTGGTCATTACTTTGT 58.213 33.333 13.48 0.00 37.48 2.83
352 356 8.942338 TGATATGTGGTCATTACTTTGTAGTC 57.058 34.615 0.00 0.00 34.52 2.59
353 357 8.536175 TGATATGTGGTCATTACTTTGTAGTCA 58.464 33.333 0.00 0.00 34.52 3.41
354 358 8.718102 ATATGTGGTCATTACTTTGTAGTCAC 57.282 34.615 0.00 0.00 34.52 3.67
355 359 5.919755 TGTGGTCATTACTTTGTAGTCACA 58.080 37.500 0.00 0.00 35.78 3.58
356 360 6.350103 TGTGGTCATTACTTTGTAGTCACAA 58.650 36.000 0.00 0.00 42.93 3.33
368 372 5.699097 TGTAGTCACAAAAACATAAGGCC 57.301 39.130 0.00 0.00 0.00 5.19
369 373 5.381757 TGTAGTCACAAAAACATAAGGCCT 58.618 37.500 0.00 0.00 0.00 5.19
370 374 6.535540 TGTAGTCACAAAAACATAAGGCCTA 58.464 36.000 5.16 0.00 0.00 3.93
371 375 6.653320 TGTAGTCACAAAAACATAAGGCCTAG 59.347 38.462 5.16 1.10 0.00 3.02
372 376 5.631119 AGTCACAAAAACATAAGGCCTAGT 58.369 37.500 5.16 1.89 0.00 2.57
373 377 5.473504 AGTCACAAAAACATAAGGCCTAGTG 59.526 40.000 5.16 11.04 0.00 2.74
374 378 5.240844 GTCACAAAAACATAAGGCCTAGTGT 59.759 40.000 5.16 11.80 0.00 3.55
375 379 6.428771 GTCACAAAAACATAAGGCCTAGTGTA 59.571 38.462 19.84 3.96 0.00 2.90
376 380 7.120726 GTCACAAAAACATAAGGCCTAGTGTAT 59.879 37.037 19.84 11.42 0.00 2.29
377 381 8.322828 TCACAAAAACATAAGGCCTAGTGTATA 58.677 33.333 19.84 2.87 0.00 1.47
378 382 9.120538 CACAAAAACATAAGGCCTAGTGTATAT 57.879 33.333 19.84 5.12 0.00 0.86
379 383 9.695155 ACAAAAACATAAGGCCTAGTGTATATT 57.305 29.630 19.84 13.60 0.00 1.28
384 388 9.603189 AACATAAGGCCTAGTGTATATTCTAGT 57.397 33.333 19.84 2.50 33.81 2.57
385 389 9.245481 ACATAAGGCCTAGTGTATATTCTAGTC 57.755 37.037 18.53 2.07 33.81 2.59
386 390 9.244292 CATAAGGCCTAGTGTATATTCTAGTCA 57.756 37.037 5.16 0.00 33.81 3.41
387 391 9.998752 ATAAGGCCTAGTGTATATTCTAGTCAT 57.001 33.333 5.16 0.00 33.81 3.06
388 392 8.728596 AAGGCCTAGTGTATATTCTAGTCATT 57.271 34.615 5.16 3.08 33.81 2.57
389 393 8.728596 AGGCCTAGTGTATATTCTAGTCATTT 57.271 34.615 1.29 0.00 33.81 2.32
390 394 9.160412 AGGCCTAGTGTATATTCTAGTCATTTT 57.840 33.333 1.29 0.00 33.81 1.82
404 408 9.802039 TTCTAGTCATTTTAATAAAGTGGGTGT 57.198 29.630 8.12 0.00 0.00 4.16
405 409 9.226606 TCTAGTCATTTTAATAAAGTGGGTGTG 57.773 33.333 8.12 0.00 0.00 3.82
406 410 6.687604 AGTCATTTTAATAAAGTGGGTGTGC 58.312 36.000 8.12 0.00 0.00 4.57
407 411 6.266558 AGTCATTTTAATAAAGTGGGTGTGCA 59.733 34.615 8.12 0.00 0.00 4.57
408 412 7.039082 AGTCATTTTAATAAAGTGGGTGTGCAT 60.039 33.333 8.12 0.00 0.00 3.96
409 413 8.247562 GTCATTTTAATAAAGTGGGTGTGCATA 58.752 33.333 8.12 0.00 0.00 3.14
410 414 8.807118 TCATTTTAATAAAGTGGGTGTGCATAA 58.193 29.630 8.12 0.00 0.00 1.90
411 415 9.598517 CATTTTAATAAAGTGGGTGTGCATAAT 57.401 29.630 0.00 0.00 0.00 1.28
415 419 9.634021 TTAATAAAGTGGGTGTGCATAATATCA 57.366 29.630 0.00 0.00 0.00 2.15
416 420 8.710749 AATAAAGTGGGTGTGCATAATATCAT 57.289 30.769 0.00 0.00 0.00 2.45
417 421 9.806448 AATAAAGTGGGTGTGCATAATATCATA 57.194 29.630 0.00 0.00 0.00 2.15
418 422 9.806448 ATAAAGTGGGTGTGCATAATATCATAA 57.194 29.630 0.00 0.00 0.00 1.90
419 423 7.510549 AAGTGGGTGTGCATAATATCATAAC 57.489 36.000 0.00 0.00 0.00 1.89
420 424 6.841601 AGTGGGTGTGCATAATATCATAACT 58.158 36.000 0.00 0.00 0.00 2.24
421 425 7.290061 AGTGGGTGTGCATAATATCATAACTT 58.710 34.615 0.00 0.00 0.00 2.66
422 426 7.779798 AGTGGGTGTGCATAATATCATAACTTT 59.220 33.333 0.00 0.00 0.00 2.66
423 427 7.862372 GTGGGTGTGCATAATATCATAACTTTG 59.138 37.037 0.00 0.00 0.00 2.77
424 428 7.014134 TGGGTGTGCATAATATCATAACTTTGG 59.986 37.037 0.00 0.00 0.00 3.28
425 429 7.014230 GGGTGTGCATAATATCATAACTTTGGT 59.986 37.037 0.00 0.00 0.00 3.67
426 430 9.062524 GGTGTGCATAATATCATAACTTTGGTA 57.937 33.333 0.00 0.00 0.00 3.25
429 433 9.612620 GTGCATAATATCATAACTTTGGTAAGC 57.387 33.333 0.00 0.00 34.60 3.09
430 434 9.348476 TGCATAATATCATAACTTTGGTAAGCA 57.652 29.630 0.00 0.00 34.60 3.91
431 435 9.612620 GCATAATATCATAACTTTGGTAAGCAC 57.387 33.333 0.00 0.00 34.60 4.40
434 438 8.451908 AATATCATAACTTTGGTAAGCACCTC 57.548 34.615 0.00 0.00 45.98 3.85
435 439 4.250464 TCATAACTTTGGTAAGCACCTCG 58.750 43.478 0.00 0.00 45.98 4.63
436 440 2.632987 AACTTTGGTAAGCACCTCGT 57.367 45.000 0.00 0.00 45.98 4.18
437 441 3.756933 AACTTTGGTAAGCACCTCGTA 57.243 42.857 0.00 0.00 45.98 3.43
438 442 3.756933 ACTTTGGTAAGCACCTCGTAA 57.243 42.857 0.00 0.00 45.98 3.18
439 443 4.075963 ACTTTGGTAAGCACCTCGTAAA 57.924 40.909 0.00 0.00 45.98 2.01
440 444 4.648651 ACTTTGGTAAGCACCTCGTAAAT 58.351 39.130 0.00 0.00 45.98 1.40
441 445 5.067954 ACTTTGGTAAGCACCTCGTAAATT 58.932 37.500 0.00 0.00 45.98 1.82
442 446 5.533528 ACTTTGGTAAGCACCTCGTAAATTT 59.466 36.000 0.00 0.00 45.98 1.82
443 447 6.040054 ACTTTGGTAAGCACCTCGTAAATTTT 59.960 34.615 0.00 0.00 45.98 1.82
444 448 6.394025 TTGGTAAGCACCTCGTAAATTTTT 57.606 33.333 0.00 0.00 45.98 1.94
445 449 7.507733 TTGGTAAGCACCTCGTAAATTTTTA 57.492 32.000 0.00 0.00 45.98 1.52
446 450 7.507733 TGGTAAGCACCTCGTAAATTTTTAA 57.492 32.000 0.00 0.00 45.98 1.52
447 451 8.113173 TGGTAAGCACCTCGTAAATTTTTAAT 57.887 30.769 0.00 0.00 45.98 1.40
448 452 9.228949 TGGTAAGCACCTCGTAAATTTTTAATA 57.771 29.630 0.00 0.00 45.98 0.98
449 453 9.494479 GGTAAGCACCTCGTAAATTTTTAATAC 57.506 33.333 0.00 0.00 42.11 1.89
474 478 5.869888 AGTATTGCTAAGTGCTGTGTTAGTC 59.130 40.000 0.00 0.00 43.37 2.59
516 520 1.153086 CAGGCCTGCAGGGTGTATC 60.153 63.158 33.46 15.68 37.43 2.24
544 548 6.683715 TCCCTCCGTTTCAAAATATTTGAAC 58.316 36.000 15.64 6.83 38.05 3.18
546 550 6.806739 CCCTCCGTTTCAAAATATTTGAACTC 59.193 38.462 15.64 11.56 38.05 3.01
622 626 9.953697 AAATGTAACAAAATCTACAACGCTAAA 57.046 25.926 0.00 0.00 32.05 1.85
628 632 5.607119 AAATCTACAACGCTAAACCAGTG 57.393 39.130 0.00 0.00 40.83 3.66
635 639 2.999331 ACGCTAAACCAGTGCCATTAT 58.001 42.857 0.00 0.00 38.41 1.28
638 642 4.515191 ACGCTAAACCAGTGCCATTATATG 59.485 41.667 0.00 0.00 38.41 1.78
639 643 4.515191 CGCTAAACCAGTGCCATTATATGT 59.485 41.667 0.00 0.00 0.00 2.29
642 646 7.530010 GCTAAACCAGTGCCATTATATGTATG 58.470 38.462 0.00 0.00 0.00 2.39
643 647 7.174946 GCTAAACCAGTGCCATTATATGTATGT 59.825 37.037 0.00 0.00 0.00 2.29
644 648 9.719355 CTAAACCAGTGCCATTATATGTATGTA 57.281 33.333 0.00 0.00 0.00 2.29
646 650 8.565896 AACCAGTGCCATTATATGTATGTATG 57.434 34.615 0.00 0.00 0.00 2.39
647 651 7.689299 ACCAGTGCCATTATATGTATGTATGT 58.311 34.615 0.00 0.00 0.00 2.29
648 652 8.821817 ACCAGTGCCATTATATGTATGTATGTA 58.178 33.333 0.00 0.00 0.00 2.29
730 758 6.746745 TTTTCTACGAACTTGGTCAAACTT 57.253 33.333 0.00 0.00 0.00 2.66
731 759 7.846644 TTTTCTACGAACTTGGTCAAACTTA 57.153 32.000 0.00 0.00 0.00 2.24
751 779 7.376335 ACTTAAGGAAGTTTGACTTAGGACT 57.624 36.000 7.53 0.00 43.70 3.85
770 798 4.506095 GGACTAACCTAAAACCTGGAAGCA 60.506 45.833 0.00 0.00 35.41 3.91
779 818 1.140312 ACCTGGAAGCAAGAACCTCA 58.860 50.000 0.00 0.00 0.00 3.86
780 819 1.494721 ACCTGGAAGCAAGAACCTCAA 59.505 47.619 0.00 0.00 0.00 3.02
781 820 2.108952 ACCTGGAAGCAAGAACCTCAAT 59.891 45.455 0.00 0.00 0.00 2.57
782 821 3.160269 CCTGGAAGCAAGAACCTCAATT 58.840 45.455 0.00 0.00 0.00 2.32
783 822 3.575687 CCTGGAAGCAAGAACCTCAATTT 59.424 43.478 0.00 0.00 0.00 1.82
784 823 4.553323 CTGGAAGCAAGAACCTCAATTTG 58.447 43.478 0.00 0.00 0.00 2.32
785 824 4.214310 TGGAAGCAAGAACCTCAATTTGA 58.786 39.130 0.00 0.00 0.00 2.69
786 825 4.648762 TGGAAGCAAGAACCTCAATTTGAA 59.351 37.500 0.01 0.00 0.00 2.69
787 826 5.128499 TGGAAGCAAGAACCTCAATTTGAAA 59.872 36.000 0.01 0.00 0.00 2.69
788 827 5.463392 GGAAGCAAGAACCTCAATTTGAAAC 59.537 40.000 0.01 0.00 0.00 2.78
789 828 4.948847 AGCAAGAACCTCAATTTGAAACC 58.051 39.130 0.01 0.00 0.00 3.27
790 829 4.405358 AGCAAGAACCTCAATTTGAAACCA 59.595 37.500 0.01 0.00 0.00 3.67
791 830 5.104982 AGCAAGAACCTCAATTTGAAACCAA 60.105 36.000 0.01 0.00 0.00 3.67
792 831 5.234972 GCAAGAACCTCAATTTGAAACCAAG 59.765 40.000 0.01 0.00 0.00 3.61
793 832 6.572519 CAAGAACCTCAATTTGAAACCAAGA 58.427 36.000 0.01 0.00 0.00 3.02
794 833 6.790232 AGAACCTCAATTTGAAACCAAGAA 57.210 33.333 0.01 0.00 0.00 2.52
795 834 7.181569 AGAACCTCAATTTGAAACCAAGAAA 57.818 32.000 0.01 0.00 0.00 2.52
796 835 7.267857 AGAACCTCAATTTGAAACCAAGAAAG 58.732 34.615 0.01 0.00 0.00 2.62
797 836 6.544928 ACCTCAATTTGAAACCAAGAAAGT 57.455 33.333 0.01 0.00 0.00 2.66
798 837 6.946340 ACCTCAATTTGAAACCAAGAAAGTT 58.054 32.000 0.01 0.00 0.00 2.66
799 838 7.394016 ACCTCAATTTGAAACCAAGAAAGTTT 58.606 30.769 0.01 0.00 40.07 2.66
800 839 8.536175 ACCTCAATTTGAAACCAAGAAAGTTTA 58.464 29.630 0.01 0.00 37.55 2.01
801 840 8.817100 CCTCAATTTGAAACCAAGAAAGTTTAC 58.183 33.333 0.01 0.00 37.55 2.01
802 841 9.364989 CTCAATTTGAAACCAAGAAAGTTTACA 57.635 29.630 0.01 0.00 37.55 2.41
803 842 9.712305 TCAATTTGAAACCAAGAAAGTTTACAA 57.288 25.926 0.00 0.00 37.55 2.41
804 843 9.753669 CAATTTGAAACCAAGAAAGTTTACAAC 57.246 29.630 0.00 0.00 37.55 3.32
822 861 9.698617 GTTTACAACTTACAACTAAGTCTGTTG 57.301 33.333 5.24 5.24 41.58 3.33
823 862 6.920569 ACAACTTACAACTAAGTCTGTTGG 57.079 37.500 10.65 0.00 46.28 3.77
825 864 7.558604 ACAACTTACAACTAAGTCTGTTGGTA 58.441 34.615 10.65 0.23 46.28 3.25
826 865 8.208903 ACAACTTACAACTAAGTCTGTTGGTAT 58.791 33.333 10.65 0.00 46.28 2.73
827 866 8.495949 CAACTTACAACTAAGTCTGTTGGTATG 58.504 37.037 10.65 6.25 46.28 2.39
839 1007 6.600822 AGTCTGTTGGTATGATGAGGAAAATG 59.399 38.462 0.00 0.00 0.00 2.32
844 1012 7.833682 TGTTGGTATGATGAGGAAAATGTACAT 59.166 33.333 1.41 1.41 0.00 2.29
880 1049 3.577667 CTCCCATACGTTGTTGTCGTTA 58.422 45.455 0.00 0.00 41.72 3.18
881 1050 3.316283 TCCCATACGTTGTTGTCGTTAC 58.684 45.455 0.00 0.00 41.72 2.50
932 1121 5.279384 GCAGATATTTTCTTGCATGACCTG 58.721 41.667 1.02 4.86 32.24 4.00
937 1126 4.572985 TTTTCTTGCATGACCTGTCTTG 57.427 40.909 1.02 8.39 37.68 3.02
948 1137 1.521450 CCTGTCTTGGGTGCAGCAAG 61.521 60.000 19.06 17.71 0.00 4.01
955 1144 2.048603 GGGTGCAGCAAGTCCATCC 61.049 63.158 19.06 0.00 0.00 3.51
973 1169 8.639761 AGTCCATCCACACTACACTATAAATAC 58.360 37.037 0.00 0.00 0.00 1.89
975 1171 8.638873 TCCATCCACACTACACTATAAATACAG 58.361 37.037 0.00 0.00 0.00 2.74
976 1172 8.421784 CCATCCACACTACACTATAAATACAGT 58.578 37.037 0.00 0.00 0.00 3.55
998 1194 7.807907 ACAGTACATAACAGTTAAATTGCTTGC 59.192 33.333 0.00 0.00 0.00 4.01
1001 1197 6.520272 ACATAACAGTTAAATTGCTTGCCAA 58.480 32.000 0.00 0.00 37.94 4.52
1002 1198 6.423604 ACATAACAGTTAAATTGCTTGCCAAC 59.576 34.615 0.00 0.00 35.99 3.77
1003 1199 4.399004 ACAGTTAAATTGCTTGCCAACA 57.601 36.364 0.00 0.00 35.99 3.33
1004 1200 4.959723 ACAGTTAAATTGCTTGCCAACAT 58.040 34.783 0.00 0.00 35.99 2.71
1006 1202 4.389687 CAGTTAAATTGCTTGCCAACATCC 59.610 41.667 0.00 0.00 35.99 3.51
1018 1214 2.618053 CCAACATCCAGTACCGAGTTC 58.382 52.381 0.00 0.00 0.00 3.01
1019 1215 2.028476 CCAACATCCAGTACCGAGTTCA 60.028 50.000 0.00 0.00 0.00 3.18
1022 1218 2.028385 ACATCCAGTACCGAGTTCAACC 60.028 50.000 0.00 0.00 0.00 3.77
1034 1230 0.250338 GTTCAACCGGAGACCAAGCT 60.250 55.000 9.46 0.00 0.00 3.74
1053 1249 0.982852 TTCCTCCAGTCGCCATGGAT 60.983 55.000 18.40 0.00 45.64 3.41
1055 1251 0.034059 CCTCCAGTCGCCATGGATAC 59.966 60.000 18.40 12.48 45.64 2.24
1218 1453 4.293648 CACCACCTCGTCGGCACA 62.294 66.667 0.00 0.00 35.61 4.57
1575 1810 2.258591 GCGTCTTCTGCCTCGTCA 59.741 61.111 0.00 0.00 0.00 4.35
1589 1830 2.661566 CGTCATCCGCCATCATCGC 61.662 63.158 0.00 0.00 0.00 4.58
1630 1871 3.504906 CAGGCTGACAAACAACATCATCT 59.495 43.478 9.42 0.00 0.00 2.90
1875 2116 0.757188 ATGCCTCGGCTACTGCTACT 60.757 55.000 9.65 0.00 42.51 2.57
2120 4159 1.739067 GACTTTCCCCATCAGTTCGG 58.261 55.000 0.00 0.00 0.00 4.30
2156 4196 6.149474 CCCGACTTTTAGATGAACTGTTTGAT 59.851 38.462 0.00 0.00 0.00 2.57
2157 4197 7.333423 CCCGACTTTTAGATGAACTGTTTGATA 59.667 37.037 0.00 0.00 0.00 2.15
2158 4198 8.169268 CCGACTTTTAGATGAACTGTTTGATAC 58.831 37.037 0.00 0.00 0.00 2.24
2238 4294 1.096416 GAGCTGCTACGGACACTACT 58.904 55.000 0.15 0.00 0.00 2.57
2476 4535 0.806102 CCAAGTGATGGGCTACGACG 60.806 60.000 0.00 0.00 46.27 5.12
2483 4542 2.803479 GGGCTACGACGTACCCAG 59.197 66.667 27.03 13.68 42.33 4.45
2505 4564 2.851195 GGCACCTCCGTAATGATCAAT 58.149 47.619 0.00 0.00 0.00 2.57
2514 4573 2.545526 CGTAATGATCAATGCCTTCGCT 59.454 45.455 0.00 0.00 35.36 4.93
2550 4609 0.323633 CACATTGGGGTGAGGATGCA 60.324 55.000 0.00 0.00 41.32 3.96
2553 4612 1.866483 ATTGGGGTGAGGATGCAGCA 61.866 55.000 3.51 0.00 37.99 4.41
2608 4670 2.302157 GTGGAGTACTACAAGCAAGGGT 59.698 50.000 10.06 0.00 0.00 4.34
2611 4673 3.007614 GGAGTACTACAAGCAAGGGTCAA 59.992 47.826 0.00 0.00 0.00 3.18
2644 4706 3.508840 CATTTGGAGCGGGCCGTC 61.509 66.667 28.82 21.83 0.00 4.79
2881 5110 3.278574 ACTAGTTGTGCAAGCAAGTTGA 58.721 40.909 7.16 0.00 38.60 3.18
2904 5164 8.556213 TGAAGTAACAAACTACATAATGTCCC 57.444 34.615 0.00 0.00 37.50 4.46
2907 5167 8.561738 AGTAACAAACTACATAATGTCCCTTG 57.438 34.615 0.00 0.00 36.36 3.61
2933 5193 0.524414 GGCCATCACCAAACCGTTAC 59.476 55.000 0.00 0.00 0.00 2.50
3134 5400 9.350951 ACTGCTTAATAAAGTTCTGTTTACCTT 57.649 29.630 0.00 0.00 34.99 3.50
3222 5489 1.698116 TCCACCCACACCCCTGAAA 60.698 57.895 0.00 0.00 0.00 2.69
3227 5494 0.889186 CCCACACCCCTGAAAACGAG 60.889 60.000 0.00 0.00 0.00 4.18
3231 5498 1.301479 ACCCCTGAAAACGAGTCGC 60.301 57.895 13.59 0.00 0.00 5.19
3362 5629 6.584471 TTACAGGGAGCAAATATTAAGGGA 57.416 37.500 0.00 0.00 0.00 4.20
3363 5630 5.669798 ACAGGGAGCAAATATTAAGGGAT 57.330 39.130 0.00 0.00 0.00 3.85
3395 5662 7.122799 TGGAGCAACTTATCTATATCGCATAGT 59.877 37.037 0.00 0.00 0.00 2.12
3405 5672 2.454832 ATCGCATAGTCCATGGGGCG 62.455 60.000 21.22 21.22 45.34 6.13
3458 5725 8.220755 ACTCCGCATATTAGCTTTGAAATAAA 57.779 30.769 0.00 0.00 0.00 1.40
3498 5765 9.067986 AGTTTGACCAAATTTACCAAAAACAAA 57.932 25.926 11.10 0.00 32.36 2.83
3573 5841 6.127647 TGCCTCATTCCACAGCTTTAAATAAG 60.128 38.462 0.00 0.00 0.00 1.73
3574 5842 6.095440 GCCTCATTCCACAGCTTTAAATAAGA 59.905 38.462 0.00 0.00 0.00 2.10
3575 5843 7.362920 GCCTCATTCCACAGCTTTAAATAAGAA 60.363 37.037 0.00 0.00 0.00 2.52
3576 5844 8.186821 CCTCATTCCACAGCTTTAAATAAGAAG 58.813 37.037 0.00 0.00 0.00 2.85
3596 5864 3.657634 AGAGTAATATGCGTGCTCATGG 58.342 45.455 0.00 0.00 0.00 3.66
3598 5866 1.197721 GTAATATGCGTGCTCATGGGC 59.802 52.381 11.75 11.75 0.00 5.36
3616 5884 1.283793 CTGCGACAAACTTGCCAGG 59.716 57.895 0.00 0.00 0.00 4.45
3618 5886 2.844451 GCGACAAACTTGCCAGGCA 61.844 57.895 11.22 11.22 36.47 4.75
3630 5898 2.625823 CCAGGCAAATGCGGTCGTT 61.626 57.895 0.00 0.00 43.26 3.85
3631 5899 1.442520 CAGGCAAATGCGGTCGTTG 60.443 57.895 0.00 0.00 43.26 4.10
3665 5933 4.442706 GTCAATATGGTACTGGTGGAGTG 58.557 47.826 0.00 0.00 35.96 3.51
3666 5934 3.118408 TCAATATGGTACTGGTGGAGTGC 60.118 47.826 0.00 0.00 35.96 4.40
3693 5969 1.312815 GTGCTCATTGGCATAGGTCC 58.687 55.000 0.00 0.00 44.34 4.46
3713 5989 7.234355 AGGTCCTAGAAGAAATTTGACACAAT 58.766 34.615 0.00 0.00 0.00 2.71
3714 5990 7.175641 AGGTCCTAGAAGAAATTTGACACAATG 59.824 37.037 0.00 0.00 0.00 2.82
3716 5992 5.796935 CCTAGAAGAAATTTGACACAATGCG 59.203 40.000 0.00 0.00 0.00 4.73
3718 5994 5.215160 AGAAGAAATTTGACACAATGCGTC 58.785 37.500 0.00 0.00 0.00 5.19
3719 5995 4.836125 AGAAATTTGACACAATGCGTCT 57.164 36.364 0.00 0.00 34.37 4.18
3753 6029 8.913656 GCTATTTTCTATAGATCCACGTGTAAC 58.086 37.037 15.65 4.95 0.00 2.50
3774 6050 6.824305 AACCACATCTACTGAAATTCAAGG 57.176 37.500 0.00 0.00 0.00 3.61
3782 6058 4.734398 ACTGAAATTCAAGGTTTGTGCA 57.266 36.364 0.00 0.00 0.00 4.57
3798 6080 1.938125 GCATGTGTGCGTGTGTGTA 59.062 52.632 0.00 0.00 42.28 2.90
3808 6090 0.243907 CGTGTGTGTAGGAGACCCAG 59.756 60.000 0.00 0.00 33.88 4.45
3821 6103 2.429610 GAGACCCAGGCGTGAACTAATA 59.570 50.000 8.24 0.00 0.00 0.98
3855 6137 6.762661 AGCACAAAAGATAACAAGCAACAATT 59.237 30.769 0.00 0.00 0.00 2.32
3870 6152 4.318974 GCAACAATTTCAACATTCAGGCAC 60.319 41.667 0.00 0.00 0.00 5.01
3888 6170 1.987770 CACATTGGCGCAAAGATGAAC 59.012 47.619 10.83 0.00 0.00 3.18
3900 6182 6.183360 GCGCAAAGATGAACTACTCATAAGTT 60.183 38.462 0.30 0.00 45.23 2.66
3905 6187 4.901197 TGAACTACTCATAAGTTGGGCA 57.099 40.909 0.00 0.00 37.31 5.36
3908 6190 6.245408 TGAACTACTCATAAGTTGGGCAATT 58.755 36.000 0.00 0.00 37.31 2.32
3914 6196 4.352009 TCATAAGTTGGGCAATTCACCAT 58.648 39.130 0.00 0.00 36.48 3.55
3934 6216 5.296531 ACCATGTCAAAAGGTTGCAAATTTC 59.703 36.000 0.00 0.00 34.50 2.17
3935 6217 5.528320 CCATGTCAAAAGGTTGCAAATTTCT 59.472 36.000 0.00 0.00 34.50 2.52
3936 6218 6.038492 CCATGTCAAAAGGTTGCAAATTTCTT 59.962 34.615 0.00 0.11 34.50 2.52
3937 6219 7.415429 CCATGTCAAAAGGTTGCAAATTTCTTT 60.415 33.333 0.00 6.61 34.50 2.52
3938 6220 7.071014 TGTCAAAAGGTTGCAAATTTCTTTC 57.929 32.000 0.00 0.00 34.50 2.62
3939 6221 6.878389 TGTCAAAAGGTTGCAAATTTCTTTCT 59.122 30.769 0.00 0.00 34.50 2.52
3964 6246 6.557291 TTTTTGCATTTTAGAAAGCATGGG 57.443 33.333 0.00 0.00 39.01 4.00
3978 6260 8.607441 AGAAAGCATGGGTTCTTTTATTTTTC 57.393 30.769 0.00 0.00 33.14 2.29
3979 6261 8.432013 AGAAAGCATGGGTTCTTTTATTTTTCT 58.568 29.630 0.00 0.00 33.14 2.52
4099 8050 4.250464 ACCACACAAATATACAGGTCACG 58.750 43.478 0.00 0.00 0.00 4.35
4116 8067 3.865745 GTCACGCAACTATACTTGCTCAT 59.134 43.478 13.15 0.00 43.79 2.90
4117 8068 4.330074 GTCACGCAACTATACTTGCTCATT 59.670 41.667 13.15 0.00 43.79 2.57
4118 8069 5.518847 GTCACGCAACTATACTTGCTCATTA 59.481 40.000 13.15 0.00 43.79 1.90
4119 8070 6.035650 GTCACGCAACTATACTTGCTCATTAA 59.964 38.462 13.15 0.00 43.79 1.40
4120 8071 6.592220 TCACGCAACTATACTTGCTCATTAAA 59.408 34.615 13.15 0.00 43.79 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.030805 GCACGCTCTTGACCTTTGATTT 60.031 45.455 0.00 0.00 0.00 2.17
1 2 1.537202 GCACGCTCTTGACCTTTGATT 59.463 47.619 0.00 0.00 0.00 2.57
2 3 1.160137 GCACGCTCTTGACCTTTGAT 58.840 50.000 0.00 0.00 0.00 2.57
3 4 0.179059 TGCACGCTCTTGACCTTTGA 60.179 50.000 0.00 0.00 0.00 2.69
4 5 0.877071 ATGCACGCTCTTGACCTTTG 59.123 50.000 0.00 0.00 0.00 2.77
10 11 2.689553 TATTCCATGCACGCTCTTGA 57.310 45.000 0.00 0.00 0.00 3.02
11 12 2.938451 TCTTATTCCATGCACGCTCTTG 59.062 45.455 0.00 0.00 0.00 3.02
12 13 3.266510 TCTTATTCCATGCACGCTCTT 57.733 42.857 0.00 0.00 0.00 2.85
14 15 3.304257 CCAATCTTATTCCATGCACGCTC 60.304 47.826 0.00 0.00 0.00 5.03
16 17 2.618241 TCCAATCTTATTCCATGCACGC 59.382 45.455 0.00 0.00 0.00 5.34
17 18 4.898829 TTCCAATCTTATTCCATGCACG 57.101 40.909 0.00 0.00 0.00 5.34
18 19 7.267128 TGAATTTCCAATCTTATTCCATGCAC 58.733 34.615 0.00 0.00 0.00 4.57
19 20 7.421087 TGAATTTCCAATCTTATTCCATGCA 57.579 32.000 0.00 0.00 0.00 3.96
20 21 7.386848 CCATGAATTTCCAATCTTATTCCATGC 59.613 37.037 0.00 0.00 0.00 4.06
21 22 8.426489 ACCATGAATTTCCAATCTTATTCCATG 58.574 33.333 0.00 0.00 0.00 3.66
22 23 8.557304 ACCATGAATTTCCAATCTTATTCCAT 57.443 30.769 0.00 0.00 0.00 3.41
23 24 7.976414 ACCATGAATTTCCAATCTTATTCCA 57.024 32.000 0.00 0.00 0.00 3.53
24 25 7.712205 CCAACCATGAATTTCCAATCTTATTCC 59.288 37.037 0.00 0.00 0.00 3.01
25 26 7.225341 GCCAACCATGAATTTCCAATCTTATTC 59.775 37.037 0.00 0.00 0.00 1.75
26 27 7.049754 GCCAACCATGAATTTCCAATCTTATT 58.950 34.615 0.00 0.00 0.00 1.40
27 28 6.585416 GCCAACCATGAATTTCCAATCTTAT 58.415 36.000 0.00 0.00 0.00 1.73
28 29 5.394005 CGCCAACCATGAATTTCCAATCTTA 60.394 40.000 0.00 0.00 0.00 2.10
29 30 4.621274 CGCCAACCATGAATTTCCAATCTT 60.621 41.667 0.00 0.00 0.00 2.40
30 31 3.119029 CGCCAACCATGAATTTCCAATCT 60.119 43.478 0.00 0.00 0.00 2.40
31 32 3.189285 CGCCAACCATGAATTTCCAATC 58.811 45.455 0.00 0.00 0.00 2.67
32 33 2.566724 ACGCCAACCATGAATTTCCAAT 59.433 40.909 0.00 0.00 0.00 3.16
33 34 1.967066 ACGCCAACCATGAATTTCCAA 59.033 42.857 0.00 0.00 0.00 3.53
34 35 1.271934 CACGCCAACCATGAATTTCCA 59.728 47.619 0.00 0.00 0.00 3.53
35 36 1.994916 CACGCCAACCATGAATTTCC 58.005 50.000 0.00 0.00 0.00 3.13
36 37 1.336702 TGCACGCCAACCATGAATTTC 60.337 47.619 0.00 0.00 0.00 2.17
37 38 0.678395 TGCACGCCAACCATGAATTT 59.322 45.000 0.00 0.00 0.00 1.82
38 39 0.678395 TTGCACGCCAACCATGAATT 59.322 45.000 0.00 0.00 0.00 2.17
39 40 0.896923 ATTGCACGCCAACCATGAAT 59.103 45.000 0.00 0.00 35.99 2.57
99 103 4.597004 AGGGATAGTACACGTCTTCTTCA 58.403 43.478 0.00 0.00 0.00 3.02
100 104 4.036616 GGAGGGATAGTACACGTCTTCTTC 59.963 50.000 0.00 0.00 0.00 2.87
116 120 1.277580 CCAAGCTGGACTGGAGGGAT 61.278 60.000 0.00 0.00 40.96 3.85
117 121 1.920325 CCAAGCTGGACTGGAGGGA 60.920 63.158 0.00 0.00 40.96 4.20
143 147 7.451501 TTTTTCCCTCGATACCGTTATTTTT 57.548 32.000 0.00 0.00 37.05 1.94
168 172 6.617371 AGATCCTTTATGTATCCACCTCAAGT 59.383 38.462 0.00 0.00 0.00 3.16
174 178 6.150140 GCATCAAGATCCTTTATGTATCCACC 59.850 42.308 0.00 0.00 0.00 4.61
197 201 2.257207 ACAACAACCCTAGCTAGAGCA 58.743 47.619 22.70 0.00 45.16 4.26
205 209 6.875076 AGCTAGTATTGTACAACAACCCTAG 58.125 40.000 11.22 14.91 41.40 3.02
206 210 6.862469 AGCTAGTATTGTACAACAACCCTA 57.138 37.500 11.22 6.01 41.40 3.53
207 211 5.757099 AGCTAGTATTGTACAACAACCCT 57.243 39.130 11.22 5.17 41.40 4.34
208 212 6.036844 GCTAAGCTAGTATTGTACAACAACCC 59.963 42.308 11.22 4.52 41.40 4.11
210 214 6.817140 AGGCTAAGCTAGTATTGTACAACAAC 59.183 38.462 11.22 12.19 41.40 3.32
211 215 6.816640 CAGGCTAAGCTAGTATTGTACAACAA 59.183 38.462 11.22 0.00 42.95 2.83
212 216 6.070995 ACAGGCTAAGCTAGTATTGTACAACA 60.071 38.462 11.22 0.00 0.00 3.33
213 217 6.255887 CACAGGCTAAGCTAGTATTGTACAAC 59.744 42.308 11.22 0.00 0.00 3.32
214 218 6.338146 CACAGGCTAAGCTAGTATTGTACAA 58.662 40.000 11.41 11.41 0.00 2.41
215 219 5.681437 GCACAGGCTAAGCTAGTATTGTACA 60.681 44.000 0.00 0.00 36.96 2.90
216 220 4.745620 GCACAGGCTAAGCTAGTATTGTAC 59.254 45.833 3.36 0.00 36.96 2.90
217 221 4.202223 GGCACAGGCTAAGCTAGTATTGTA 60.202 45.833 9.76 0.00 40.87 2.41
218 222 3.432326 GGCACAGGCTAAGCTAGTATTGT 60.432 47.826 9.76 0.00 40.87 2.71
219 223 3.134458 GGCACAGGCTAAGCTAGTATTG 58.866 50.000 9.76 0.00 40.87 1.90
220 224 2.224066 CGGCACAGGCTAAGCTAGTATT 60.224 50.000 9.76 0.00 40.87 1.89
221 225 1.341531 CGGCACAGGCTAAGCTAGTAT 59.658 52.381 9.76 0.00 40.87 2.12
222 226 0.744874 CGGCACAGGCTAAGCTAGTA 59.255 55.000 9.76 0.00 40.87 1.82
223 227 1.517832 CGGCACAGGCTAAGCTAGT 59.482 57.895 9.76 0.00 40.87 2.57
224 228 1.884926 GCGGCACAGGCTAAGCTAG 60.885 63.158 9.76 6.27 40.87 3.42
225 229 2.186903 GCGGCACAGGCTAAGCTA 59.813 61.111 9.76 0.00 40.87 3.32
245 249 0.676466 TATTGACTGGGTGCGGCTTG 60.676 55.000 0.00 0.00 0.00 4.01
246 250 0.255890 ATATTGACTGGGTGCGGCTT 59.744 50.000 0.00 0.00 0.00 4.35
247 251 0.464373 CATATTGACTGGGTGCGGCT 60.464 55.000 0.00 0.00 0.00 5.52
248 252 0.748005 ACATATTGACTGGGTGCGGC 60.748 55.000 0.00 0.00 0.00 6.53
249 253 1.750193 AACATATTGACTGGGTGCGG 58.250 50.000 0.00 0.00 0.00 5.69
250 254 3.876914 ACATAACATATTGACTGGGTGCG 59.123 43.478 0.00 0.00 0.00 5.34
251 255 8.792830 ATATACATAACATATTGACTGGGTGC 57.207 34.615 0.00 0.00 0.00 5.01
289 293 9.906660 GACTTATTTTCCATCACACACAATAAA 57.093 29.630 0.00 0.00 0.00 1.40
290 294 9.295825 AGACTTATTTTCCATCACACACAATAA 57.704 29.630 0.00 0.00 0.00 1.40
291 295 8.862325 AGACTTATTTTCCATCACACACAATA 57.138 30.769 0.00 0.00 0.00 1.90
292 296 7.765695 AGACTTATTTTCCATCACACACAAT 57.234 32.000 0.00 0.00 0.00 2.71
293 297 7.581213 AAGACTTATTTTCCATCACACACAA 57.419 32.000 0.00 0.00 0.00 3.33
294 298 8.729756 CATAAGACTTATTTTCCATCACACACA 58.270 33.333 4.91 0.00 0.00 3.72
295 299 8.946085 TCATAAGACTTATTTTCCATCACACAC 58.054 33.333 4.91 0.00 0.00 3.82
296 300 9.166173 CTCATAAGACTTATTTTCCATCACACA 57.834 33.333 4.91 0.00 0.00 3.72
297 301 8.125448 GCTCATAAGACTTATTTTCCATCACAC 58.875 37.037 4.91 0.00 0.00 3.82
298 302 7.828717 TGCTCATAAGACTTATTTTCCATCACA 59.171 33.333 4.91 0.00 0.00 3.58
299 303 8.213518 TGCTCATAAGACTTATTTTCCATCAC 57.786 34.615 4.91 0.00 0.00 3.06
300 304 8.985315 ATGCTCATAAGACTTATTTTCCATCA 57.015 30.769 4.91 0.00 0.00 3.07
311 315 8.600668 ACCACATATCATATGCTCATAAGACTT 58.399 33.333 4.41 0.00 0.00 3.01
312 316 8.143673 ACCACATATCATATGCTCATAAGACT 57.856 34.615 4.41 0.00 0.00 3.24
313 317 8.037166 TGACCACATATCATATGCTCATAAGAC 58.963 37.037 4.41 0.00 0.00 3.01
314 318 8.137745 TGACCACATATCATATGCTCATAAGA 57.862 34.615 4.41 0.00 0.00 2.10
315 319 8.959705 ATGACCACATATCATATGCTCATAAG 57.040 34.615 4.41 0.00 34.99 1.73
317 321 9.822185 GTAATGACCACATATCATATGCTCATA 57.178 33.333 4.41 0.00 35.72 2.15
318 322 8.546322 AGTAATGACCACATATCATATGCTCAT 58.454 33.333 4.41 6.03 35.72 2.90
319 323 7.910584 AGTAATGACCACATATCATATGCTCA 58.089 34.615 4.41 4.03 35.72 4.26
320 324 8.783833 AAGTAATGACCACATATCATATGCTC 57.216 34.615 4.41 0.00 35.72 4.26
321 325 9.006839 CAAAGTAATGACCACATATCATATGCT 57.993 33.333 4.41 0.00 35.72 3.79
322 326 8.786898 ACAAAGTAATGACCACATATCATATGC 58.213 33.333 4.41 0.00 35.72 3.14
326 330 9.547753 GACTACAAAGTAATGACCACATATCAT 57.452 33.333 0.00 0.00 35.65 2.45
327 331 8.536175 TGACTACAAAGTAATGACCACATATCA 58.464 33.333 0.00 0.00 35.56 2.15
328 332 8.818057 GTGACTACAAAGTAATGACCACATATC 58.182 37.037 0.00 0.00 35.56 1.63
329 333 8.318412 TGTGACTACAAAGTAATGACCACATAT 58.682 33.333 0.00 0.00 35.56 1.78
330 334 7.672240 TGTGACTACAAAGTAATGACCACATA 58.328 34.615 0.00 0.00 35.56 2.29
331 335 6.530120 TGTGACTACAAAGTAATGACCACAT 58.470 36.000 0.00 0.00 35.56 3.21
332 336 5.919755 TGTGACTACAAAGTAATGACCACA 58.080 37.500 0.00 0.00 35.56 4.17
333 337 6.854496 TTGTGACTACAAAGTAATGACCAC 57.146 37.500 0.00 0.00 43.47 4.16
345 349 5.830991 AGGCCTTATGTTTTTGTGACTACAA 59.169 36.000 0.00 0.00 44.66 2.41
346 350 5.381757 AGGCCTTATGTTTTTGTGACTACA 58.618 37.500 0.00 0.00 34.31 2.74
347 351 5.959618 AGGCCTTATGTTTTTGTGACTAC 57.040 39.130 0.00 0.00 0.00 2.73
348 352 6.653320 CACTAGGCCTTATGTTTTTGTGACTA 59.347 38.462 12.58 0.00 0.00 2.59
349 353 5.473504 CACTAGGCCTTATGTTTTTGTGACT 59.526 40.000 12.58 0.00 0.00 3.41
350 354 5.240844 ACACTAGGCCTTATGTTTTTGTGAC 59.759 40.000 12.58 0.00 0.00 3.67
351 355 5.381757 ACACTAGGCCTTATGTTTTTGTGA 58.618 37.500 12.58 0.00 0.00 3.58
352 356 5.705609 ACACTAGGCCTTATGTTTTTGTG 57.294 39.130 12.58 3.80 0.00 3.33
353 357 9.695155 AATATACACTAGGCCTTATGTTTTTGT 57.305 29.630 22.59 11.86 0.00 2.83
358 362 9.603189 ACTAGAATATACACTAGGCCTTATGTT 57.397 33.333 22.59 13.66 39.97 2.71
359 363 9.245481 GACTAGAATATACACTAGGCCTTATGT 57.755 37.037 21.50 21.50 38.41 2.29
360 364 9.244292 TGACTAGAATATACACTAGGCCTTATG 57.756 37.037 12.58 12.93 42.23 1.90
361 365 9.998752 ATGACTAGAATATACACTAGGCCTTAT 57.001 33.333 12.58 5.06 42.23 1.73
362 366 9.824216 AATGACTAGAATATACACTAGGCCTTA 57.176 33.333 12.58 0.00 42.23 2.69
363 367 8.728596 AATGACTAGAATATACACTAGGCCTT 57.271 34.615 12.58 0.00 42.23 4.35
364 368 8.728596 AAATGACTAGAATATACACTAGGCCT 57.271 34.615 11.78 11.78 42.23 5.19
378 382 9.802039 ACACCCACTTTATTAAAATGACTAGAA 57.198 29.630 0.00 0.00 0.00 2.10
379 383 9.226606 CACACCCACTTTATTAAAATGACTAGA 57.773 33.333 0.00 0.00 0.00 2.43
380 384 7.968405 GCACACCCACTTTATTAAAATGACTAG 59.032 37.037 0.00 0.00 0.00 2.57
381 385 7.448777 TGCACACCCACTTTATTAAAATGACTA 59.551 33.333 0.00 0.00 0.00 2.59
382 386 6.266558 TGCACACCCACTTTATTAAAATGACT 59.733 34.615 0.00 0.00 0.00 3.41
383 387 6.451393 TGCACACCCACTTTATTAAAATGAC 58.549 36.000 0.00 0.00 0.00 3.06
384 388 6.656632 TGCACACCCACTTTATTAAAATGA 57.343 33.333 0.00 0.00 0.00 2.57
385 389 8.994429 TTATGCACACCCACTTTATTAAAATG 57.006 30.769 0.00 0.00 0.00 2.32
389 393 9.634021 TGATATTATGCACACCCACTTTATTAA 57.366 29.630 0.00 0.00 0.00 1.40
390 394 9.806448 ATGATATTATGCACACCCACTTTATTA 57.194 29.630 0.00 0.00 0.00 0.98
391 395 8.710749 ATGATATTATGCACACCCACTTTATT 57.289 30.769 0.00 0.00 0.00 1.40
392 396 9.806448 TTATGATATTATGCACACCCACTTTAT 57.194 29.630 0.00 0.00 0.00 1.40
393 397 9.062524 GTTATGATATTATGCACACCCACTTTA 57.937 33.333 0.00 0.00 0.00 1.85
394 398 7.779798 AGTTATGATATTATGCACACCCACTTT 59.220 33.333 0.00 0.00 0.00 2.66
395 399 7.290061 AGTTATGATATTATGCACACCCACTT 58.710 34.615 0.00 0.00 0.00 3.16
396 400 6.841601 AGTTATGATATTATGCACACCCACT 58.158 36.000 0.00 0.00 0.00 4.00
397 401 7.510549 AAGTTATGATATTATGCACACCCAC 57.489 36.000 0.00 0.00 0.00 4.61
398 402 7.014134 CCAAAGTTATGATATTATGCACACCCA 59.986 37.037 0.00 0.00 0.00 4.51
399 403 7.014230 ACCAAAGTTATGATATTATGCACACCC 59.986 37.037 0.00 0.00 0.00 4.61
400 404 7.940850 ACCAAAGTTATGATATTATGCACACC 58.059 34.615 0.00 0.00 0.00 4.16
403 407 9.612620 GCTTACCAAAGTTATGATATTATGCAC 57.387 33.333 0.00 0.00 34.99 4.57
404 408 9.348476 TGCTTACCAAAGTTATGATATTATGCA 57.652 29.630 0.00 0.00 34.99 3.96
405 409 9.612620 GTGCTTACCAAAGTTATGATATTATGC 57.387 33.333 0.00 0.00 34.99 3.14
408 412 9.555727 GAGGTGCTTACCAAAGTTATGATATTA 57.444 33.333 0.00 0.00 34.99 0.98
409 413 7.226720 CGAGGTGCTTACCAAAGTTATGATATT 59.773 37.037 0.00 0.00 34.99 1.28
410 414 6.706270 CGAGGTGCTTACCAAAGTTATGATAT 59.294 38.462 0.00 0.00 34.99 1.63
411 415 6.046593 CGAGGTGCTTACCAAAGTTATGATA 58.953 40.000 0.00 0.00 34.99 2.15
412 416 4.876107 CGAGGTGCTTACCAAAGTTATGAT 59.124 41.667 0.00 0.00 34.99 2.45
413 417 4.250464 CGAGGTGCTTACCAAAGTTATGA 58.750 43.478 0.00 0.00 34.99 2.15
414 418 4.000988 ACGAGGTGCTTACCAAAGTTATG 58.999 43.478 0.00 0.00 34.99 1.90
415 419 4.281898 ACGAGGTGCTTACCAAAGTTAT 57.718 40.909 0.00 0.00 34.99 1.89
416 420 3.756933 ACGAGGTGCTTACCAAAGTTA 57.243 42.857 0.00 0.00 34.99 2.24
417 421 2.632987 ACGAGGTGCTTACCAAAGTT 57.367 45.000 0.00 0.00 34.99 2.66
418 422 3.756933 TTACGAGGTGCTTACCAAAGT 57.243 42.857 0.00 0.00 34.99 2.66
419 423 5.622770 AATTTACGAGGTGCTTACCAAAG 57.377 39.130 0.00 0.00 35.68 2.77
420 424 6.394025 AAAATTTACGAGGTGCTTACCAAA 57.606 33.333 0.00 0.00 0.00 3.28
421 425 6.394025 AAAAATTTACGAGGTGCTTACCAA 57.606 33.333 0.00 0.00 0.00 3.67
422 426 7.507733 TTAAAAATTTACGAGGTGCTTACCA 57.492 32.000 0.00 0.00 0.00 3.25
423 427 9.494479 GTATTAAAAATTTACGAGGTGCTTACC 57.506 33.333 0.00 0.00 0.00 2.85
426 430 8.789762 ACTGTATTAAAAATTTACGAGGTGCTT 58.210 29.630 0.00 0.00 0.00 3.91
427 431 8.331730 ACTGTATTAAAAATTTACGAGGTGCT 57.668 30.769 0.00 0.00 0.00 4.40
464 468 4.621991 ACTACAAGCACAGACTAACACAG 58.378 43.478 0.00 0.00 0.00 3.66
474 478 2.600420 CACATCGCTACTACAAGCACAG 59.400 50.000 0.00 0.00 42.91 3.66
516 520 8.682710 TCAAATATTTTGAAACGGAGGGAATAG 58.317 33.333 0.00 0.00 0.00 1.73
544 548 8.273780 AGCTTGATTTAGGACAAACATAAGAG 57.726 34.615 0.00 0.00 0.00 2.85
546 550 9.696917 AAAAGCTTGATTTAGGACAAACATAAG 57.303 29.630 0.00 0.00 0.00 1.73
594 598 8.865590 AGCGTTGTAGATTTTGTTACATTTTT 57.134 26.923 0.00 0.00 30.53 1.94
600 604 7.354257 TGGTTTAGCGTTGTAGATTTTGTTAC 58.646 34.615 0.00 0.00 0.00 2.50
611 615 1.202663 TGGCACTGGTTTAGCGTTGTA 60.203 47.619 0.00 0.00 0.00 2.41
617 621 7.174946 ACATACATATAATGGCACTGGTTTAGC 59.825 37.037 0.00 0.00 33.60 3.09
622 626 7.689299 ACATACATACATATAATGGCACTGGT 58.311 34.615 0.00 0.00 33.60 4.00
701 729 9.724839 TTTGACCAAGTTCGTAGAAAATTTTAG 57.275 29.630 2.75 0.00 45.90 1.85
702 730 9.505995 GTTTGACCAAGTTCGTAGAAAATTTTA 57.494 29.630 2.75 0.00 45.90 1.52
703 731 8.248253 AGTTTGACCAAGTTCGTAGAAAATTTT 58.752 29.630 2.28 2.28 45.90 1.82
704 732 7.768240 AGTTTGACCAAGTTCGTAGAAAATTT 58.232 30.769 0.00 0.00 45.90 1.82
705 733 7.329588 AGTTTGACCAAGTTCGTAGAAAATT 57.670 32.000 0.00 0.00 45.90 1.82
706 734 6.937436 AGTTTGACCAAGTTCGTAGAAAAT 57.063 33.333 0.00 0.00 45.90 1.82
711 739 5.987347 TCCTTAAGTTTGACCAAGTTCGTAG 59.013 40.000 0.97 0.00 30.16 3.51
715 743 6.694877 ACTTCCTTAAGTTTGACCAAGTTC 57.305 37.500 0.97 0.00 43.60 3.01
730 758 7.511714 AGGTTAGTCCTAAGTCAAACTTCCTTA 59.488 37.037 0.00 0.00 46.10 2.69
731 759 6.329460 AGGTTAGTCCTAAGTCAAACTTCCTT 59.671 38.462 0.00 0.00 46.10 3.36
751 779 5.313280 TCTTGCTTCCAGGTTTTAGGTTA 57.687 39.130 0.00 0.00 0.00 2.85
770 798 6.790232 TCTTGGTTTCAAATTGAGGTTCTT 57.210 33.333 0.00 0.00 31.77 2.52
804 843 8.873830 CATCATACCAACAGACTTAGTTGTAAG 58.126 37.037 0.00 0.00 43.61 2.34
810 849 5.958380 TCCTCATCATACCAACAGACTTAGT 59.042 40.000 0.00 0.00 0.00 2.24
818 857 7.171653 TGTACATTTTCCTCATCATACCAACA 58.828 34.615 0.00 0.00 0.00 3.33
819 858 7.624360 TGTACATTTTCCTCATCATACCAAC 57.376 36.000 0.00 0.00 0.00 3.77
820 859 8.821686 AATGTACATTTTCCTCATCATACCAA 57.178 30.769 15.47 0.00 0.00 3.67
822 861 9.520204 CAAAATGTACATTTTCCTCATCATACC 57.480 33.333 33.49 0.00 46.01 2.73
839 1007 7.771183 TGGGAGCTGAATAATTCAAAATGTAC 58.229 34.615 0.00 0.00 39.58 2.90
844 1012 6.601613 ACGTATGGGAGCTGAATAATTCAAAA 59.398 34.615 0.00 0.00 39.58 2.44
858 1027 0.719465 CGACAACAACGTATGGGAGC 59.281 55.000 0.00 0.00 0.00 4.70
880 1049 1.336887 CGAAAGTCCAGACCATGTCGT 60.337 52.381 0.00 0.00 37.67 4.34
881 1050 1.350193 CGAAAGTCCAGACCATGTCG 58.650 55.000 0.00 0.00 37.67 4.35
888 1057 0.106149 ACACCACCGAAAGTCCAGAC 59.894 55.000 0.00 0.00 0.00 3.51
932 1121 1.518903 GGACTTGCTGCACCCAAGAC 61.519 60.000 22.52 17.61 41.64 3.01
937 1126 2.048603 GGATGGACTTGCTGCACCC 61.049 63.158 0.00 4.85 0.00 4.61
948 1137 8.418662 TGTATTTATAGTGTAGTGTGGATGGAC 58.581 37.037 0.00 0.00 0.00 4.02
973 1169 7.273381 GGCAAGCAATTTAACTGTTATGTACTG 59.727 37.037 0.37 0.00 0.00 2.74
975 1171 7.087639 TGGCAAGCAATTTAACTGTTATGTAC 58.912 34.615 0.37 0.00 0.00 2.90
976 1172 7.220741 TGGCAAGCAATTTAACTGTTATGTA 57.779 32.000 0.37 0.00 0.00 2.29
978 1174 6.423302 TGTTGGCAAGCAATTTAACTGTTATG 59.577 34.615 0.00 0.00 0.00 1.90
980 1176 5.907207 TGTTGGCAAGCAATTTAACTGTTA 58.093 33.333 0.00 0.00 0.00 2.41
981 1177 4.764172 TGTTGGCAAGCAATTTAACTGTT 58.236 34.783 0.00 0.00 0.00 3.16
982 1178 4.399004 TGTTGGCAAGCAATTTAACTGT 57.601 36.364 0.00 0.00 0.00 3.55
984 1180 4.040217 TGGATGTTGGCAAGCAATTTAACT 59.960 37.500 0.00 0.00 0.00 2.24
985 1181 4.314121 TGGATGTTGGCAAGCAATTTAAC 58.686 39.130 0.00 0.00 0.00 2.01
986 1182 4.040217 ACTGGATGTTGGCAAGCAATTTAA 59.960 37.500 0.00 0.00 0.00 1.52
987 1183 3.577848 ACTGGATGTTGGCAAGCAATTTA 59.422 39.130 0.00 0.00 0.00 1.40
988 1184 2.369532 ACTGGATGTTGGCAAGCAATTT 59.630 40.909 0.00 0.00 0.00 1.82
989 1185 1.972795 ACTGGATGTTGGCAAGCAATT 59.027 42.857 0.00 0.00 0.00 2.32
990 1186 1.636148 ACTGGATGTTGGCAAGCAAT 58.364 45.000 0.00 0.00 0.00 3.56
991 1187 1.885887 GTACTGGATGTTGGCAAGCAA 59.114 47.619 0.00 0.00 0.00 3.91
992 1188 1.533625 GTACTGGATGTTGGCAAGCA 58.466 50.000 0.00 2.31 0.00 3.91
993 1189 0.811281 GGTACTGGATGTTGGCAAGC 59.189 55.000 0.00 0.00 0.00 4.01
994 1190 1.086696 CGGTACTGGATGTTGGCAAG 58.913 55.000 0.00 0.00 0.00 4.01
995 1191 0.687920 TCGGTACTGGATGTTGGCAA 59.312 50.000 0.85 0.00 0.00 4.52
996 1192 0.249120 CTCGGTACTGGATGTTGGCA 59.751 55.000 0.85 0.00 0.00 4.92
997 1193 0.249398 ACTCGGTACTGGATGTTGGC 59.751 55.000 0.85 0.00 0.00 4.52
998 1194 2.028476 TGAACTCGGTACTGGATGTTGG 60.028 50.000 0.85 0.00 0.00 3.77
1001 1197 2.028385 GGTTGAACTCGGTACTGGATGT 60.028 50.000 0.85 0.00 0.00 3.06
1002 1198 2.618053 GGTTGAACTCGGTACTGGATG 58.382 52.381 0.85 0.00 0.00 3.51
1003 1199 1.203994 CGGTTGAACTCGGTACTGGAT 59.796 52.381 0.85 0.00 0.00 3.41
1004 1200 0.599558 CGGTTGAACTCGGTACTGGA 59.400 55.000 0.85 0.00 0.00 3.86
1006 1202 0.599558 TCCGGTTGAACTCGGTACTG 59.400 55.000 19.51 0.00 45.79 2.74
1018 1214 0.955919 GGAAGCTTGGTCTCCGGTTG 60.956 60.000 2.10 0.00 0.00 3.77
1019 1215 1.128188 AGGAAGCTTGGTCTCCGGTT 61.128 55.000 2.10 0.00 0.00 4.44
1022 1218 1.219393 GGAGGAAGCTTGGTCTCCG 59.781 63.158 18.51 0.00 36.78 4.63
1034 1230 0.982852 ATCCATGGCGACTGGAGGAA 60.983 55.000 6.96 0.00 45.64 3.36
1575 1810 1.073722 AATGGCGATGATGGCGGAT 59.926 52.632 0.00 0.00 37.19 4.18
1589 1830 2.718073 GCCAGCTCCTTGCCAATGG 61.718 63.158 0.00 0.00 44.23 3.16
1875 2116 2.851194 AGGAGTAGGAGTACCAGTAGCA 59.149 50.000 0.00 0.00 38.94 3.49
2088 4122 7.661437 TGATGGGGAAAGTCGAAGAATATATTG 59.339 37.037 1.78 0.00 39.69 1.90
2097 4136 2.770164 ACTGATGGGGAAAGTCGAAG 57.230 50.000 0.00 0.00 0.00 3.79
2133 4173 8.926710 AGTATCAAACAGTTCATCTAAAAGTCG 58.073 33.333 0.00 0.00 0.00 4.18
2238 4294 0.107703 CCCATTCTAGCGTGGAAGCA 60.108 55.000 13.09 0.00 37.72 3.91
2483 4542 0.250338 GATCATTACGGAGGTGCCCC 60.250 60.000 0.00 0.00 0.00 5.80
2496 4555 2.372264 ACAGCGAAGGCATTGATCATT 58.628 42.857 0.00 0.00 43.41 2.57
2502 4561 4.874534 CCAACAGCGAAGGCATTG 57.125 55.556 0.00 0.00 43.41 2.82
2535 4594 2.356278 GCTGCATCCTCACCCCAA 59.644 61.111 0.00 0.00 0.00 4.12
2550 4609 2.604686 TCCGGCCTGAACTCTGCT 60.605 61.111 0.00 0.00 0.00 4.24
2553 4612 1.684049 CCTCTCCGGCCTGAACTCT 60.684 63.158 0.00 0.00 0.00 3.24
2881 5110 9.010029 CAAGGGACATTATGTAGTTTGTTACTT 57.990 33.333 0.00 0.00 38.33 2.24
2904 5164 1.338674 TGGTGATGGCCGTCTTACAAG 60.339 52.381 25.20 0.00 0.00 3.16
2907 5167 1.467342 GTTTGGTGATGGCCGTCTTAC 59.533 52.381 25.20 15.74 0.00 2.34
2933 5193 5.880054 ATCCGGACATTTTGTTGACTTAG 57.120 39.130 6.12 0.00 0.00 2.18
3165 5432 1.439353 CGATGACTTTCATGCCCGGG 61.439 60.000 19.09 19.09 37.20 5.73
3222 5489 2.050351 CAGGTGTCGCGACTCGTT 60.050 61.111 36.27 22.29 39.67 3.85
3227 5494 2.430921 CTGGTCAGGTGTCGCGAC 60.431 66.667 31.66 31.66 0.00 5.19
3231 5498 2.740055 GCTGCTGGTCAGGTGTCG 60.740 66.667 0.00 0.00 43.06 4.35
3363 5630 9.639601 CGATATAGATAAGTTGCTCCATAACAA 57.360 33.333 0.00 0.00 0.00 2.83
3395 5662 4.275810 GAGTACTATATACGCCCCATGGA 58.724 47.826 15.22 0.00 0.00 3.41
3476 5743 9.720769 TTACTTTGTTTTTGGTAAATTTGGTCA 57.279 25.926 0.00 0.00 0.00 4.02
3542 5810 2.429610 GCTGTGGAATGAGGCATGATTT 59.570 45.455 0.00 0.00 0.00 2.17
3546 5814 1.471119 AAGCTGTGGAATGAGGCATG 58.529 50.000 0.00 0.00 0.00 4.06
3550 5818 7.630242 TCTTATTTAAAGCTGTGGAATGAGG 57.370 36.000 0.00 0.00 0.00 3.86
3551 5819 8.950210 TCTTCTTATTTAAAGCTGTGGAATGAG 58.050 33.333 0.00 0.00 0.00 2.90
3552 5820 8.862325 TCTTCTTATTTAAAGCTGTGGAATGA 57.138 30.769 0.00 0.00 0.00 2.57
3556 5824 9.959721 ATTACTCTTCTTATTTAAAGCTGTGGA 57.040 29.630 0.00 0.00 0.00 4.02
3573 5841 4.151335 CCATGAGCACGCATATTACTCTTC 59.849 45.833 0.00 0.00 0.00 2.87
3574 5842 4.060900 CCATGAGCACGCATATTACTCTT 58.939 43.478 0.00 0.00 0.00 2.85
3575 5843 3.555795 CCCATGAGCACGCATATTACTCT 60.556 47.826 0.00 0.00 0.00 3.24
3576 5844 2.738846 CCCATGAGCACGCATATTACTC 59.261 50.000 0.00 0.00 0.00 2.59
3596 5864 2.050077 GGCAAGTTTGTCGCAGCC 60.050 61.111 0.00 0.00 34.71 4.85
3598 5866 1.283793 CCTGGCAAGTTTGTCGCAG 59.716 57.895 0.00 0.00 35.00 5.18
3616 5884 0.793861 TACTCAACGACCGCATTTGC 59.206 50.000 0.00 0.00 37.78 3.68
3618 5886 1.076332 GCTACTCAACGACCGCATTT 58.924 50.000 0.00 0.00 0.00 2.32
3623 5891 0.992072 CATGTGCTACTCAACGACCG 59.008 55.000 0.00 0.00 0.00 4.79
3624 5892 1.337823 ACCATGTGCTACTCAACGACC 60.338 52.381 0.00 0.00 0.00 4.79
3630 5898 4.164030 ACCATATTGACCATGTGCTACTCA 59.836 41.667 0.00 0.00 0.00 3.41
3631 5899 4.708177 ACCATATTGACCATGTGCTACTC 58.292 43.478 0.00 0.00 0.00 2.59
3665 5933 0.457853 CCAATGAGCACATGCACTGC 60.458 55.000 9.73 9.73 45.16 4.40
3666 5934 0.457853 GCCAATGAGCACATGCACTG 60.458 55.000 6.64 0.00 45.16 3.66
3693 5969 6.373779 ACGCATTGTGTCAAATTTCTTCTAG 58.626 36.000 0.00 0.00 0.00 2.43
3713 5989 5.779806 GAAAATAGCTTTCTACAGACGCA 57.220 39.130 0.00 0.00 40.38 5.24
3753 6029 6.824305 AACCTTGAATTTCAGTAGATGTGG 57.176 37.500 0.00 0.00 0.00 4.17
3782 6058 0.391228 TCCTACACACACGCACACAT 59.609 50.000 0.00 0.00 0.00 3.21
3792 6074 1.597461 GCCTGGGTCTCCTACACAC 59.403 63.158 0.00 0.00 36.25 3.82
3798 6080 2.203788 TTCACGCCTGGGTCTCCT 60.204 61.111 0.00 0.00 0.00 3.69
3808 6090 3.493129 TCATTCGCATATTAGTTCACGCC 59.507 43.478 0.00 0.00 0.00 5.68
3821 6103 5.106197 TGTTATCTTTTGTGCTCATTCGCAT 60.106 36.000 0.00 0.00 42.62 4.73
3834 6116 9.424659 GTTGAAATTGTTGCTTGTTATCTTTTG 57.575 29.630 0.00 0.00 0.00 2.44
3841 6123 7.224362 CCTGAATGTTGAAATTGTTGCTTGTTA 59.776 33.333 0.00 0.00 0.00 2.41
3855 6137 2.288948 GCCAATGTGCCTGAATGTTGAA 60.289 45.455 0.00 0.00 0.00 2.69
3870 6152 2.642139 AGTTCATCTTTGCGCCAATG 57.358 45.000 4.18 3.40 0.00 2.82
3888 6170 5.066505 GGTGAATTGCCCAACTTATGAGTAG 59.933 44.000 0.00 0.00 34.21 2.57
3900 6182 2.006805 TTGACATGGTGAATTGCCCA 57.993 45.000 0.00 0.00 34.66 5.36
3905 6187 4.141756 TGCAACCTTTTGACATGGTGAATT 60.142 37.500 0.00 0.00 34.24 2.17
3908 6190 2.382882 TGCAACCTTTTGACATGGTGA 58.617 42.857 0.00 0.00 34.24 4.02
3914 6196 6.878389 AGAAAGAAATTTGCAACCTTTTGACA 59.122 30.769 0.00 0.00 34.24 3.58
3946 6228 5.077134 AGAACCCATGCTTTCTAAAATGC 57.923 39.130 5.47 0.00 36.39 3.56
3984 6266 7.727186 CCCACTACTTTACCACTGATATACCTA 59.273 40.741 0.00 0.00 0.00 3.08
3986 6268 6.325804 ACCCACTACTTTACCACTGATATACC 59.674 42.308 0.00 0.00 0.00 2.73
4026 6309 8.038944 TCTCTACGTCTTTTATGGCAAGTTATT 58.961 33.333 0.00 0.00 0.00 1.40
4030 6313 5.169295 GTCTCTACGTCTTTTATGGCAAGT 58.831 41.667 0.00 0.00 0.00 3.16
4031 6314 5.168569 TGTCTCTACGTCTTTTATGGCAAG 58.831 41.667 0.00 0.00 0.00 4.01
4032 6315 5.142061 TGTCTCTACGTCTTTTATGGCAA 57.858 39.130 0.00 0.00 0.00 4.52
4033 6316 4.794278 TGTCTCTACGTCTTTTATGGCA 57.206 40.909 0.00 0.00 0.00 4.92
4034 6317 6.663944 AATTGTCTCTACGTCTTTTATGGC 57.336 37.500 0.00 0.00 0.00 4.40
4035 6318 7.828604 CGTAATTGTCTCTACGTCTTTTATGG 58.171 38.462 0.00 0.00 36.89 2.74
4045 7996 8.076714 TGGTATACTACGTAATTGTCTCTACG 57.923 38.462 2.25 0.41 44.97 3.51
4077 8028 4.250464 CGTGACCTGTATATTTGTGTGGT 58.750 43.478 0.00 0.00 0.00 4.16
4078 8029 3.063452 GCGTGACCTGTATATTTGTGTGG 59.937 47.826 0.00 0.00 0.00 4.17
4079 8030 3.682377 TGCGTGACCTGTATATTTGTGTG 59.318 43.478 0.00 0.00 0.00 3.82
4090 8041 3.585862 CAAGTATAGTTGCGTGACCTGT 58.414 45.455 7.36 0.00 0.00 4.00
4091 8042 2.348666 GCAAGTATAGTTGCGTGACCTG 59.651 50.000 25.34 0.00 43.24 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.