Multiple sequence alignment - TraesCS2A01G053200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G053200 chr2A 100.000 5464 0 0 1 5464 21260141 21265604 0.000000e+00 10091.0
1 TraesCS2A01G053200 chr2B 92.581 2669 143 17 2834 5462 33906925 33909578 0.000000e+00 3781.0
2 TraesCS2A01G053200 chr2B 86.999 1323 122 32 3196 4485 33850165 33851470 0.000000e+00 1445.0
3 TraesCS2A01G053200 chr2B 88.612 1124 104 12 3588 4691 33876759 33877878 0.000000e+00 1345.0
4 TraesCS2A01G053200 chr2B 88.612 1124 104 12 3588 4691 33892485 33893604 0.000000e+00 1345.0
5 TraesCS2A01G053200 chr2B 84.259 972 111 29 3546 4488 33860101 33861059 0.000000e+00 909.0
6 TraesCS2A01G053200 chr2B 84.281 967 113 24 3546 4485 33855297 33856251 0.000000e+00 907.0
7 TraesCS2A01G053200 chr2B 92.203 590 20 5 2249 2838 33849257 33849820 0.000000e+00 811.0
8 TraesCS2A01G053200 chr2B 85.465 688 68 13 4778 5463 33877874 33878531 0.000000e+00 688.0
9 TraesCS2A01G053200 chr2B 85.029 688 69 14 4778 5463 33893600 33894255 0.000000e+00 669.0
10 TraesCS2A01G053200 chr2B 89.239 381 36 5 2877 3256 33876390 33876766 6.410000e-129 472.0
11 TraesCS2A01G053200 chr2B 89.239 381 36 5 2877 3256 33892116 33892492 6.410000e-129 472.0
12 TraesCS2A01G053200 chr2B 88.976 381 37 5 2877 3256 33873275 33873651 2.980000e-127 466.0
13 TraesCS2A01G053200 chr2B 88.976 381 37 5 2877 3256 33885776 33886152 2.980000e-127 466.0
14 TraesCS2A01G053200 chr2B 95.423 284 11 1 2836 3119 33849852 33850133 8.350000e-123 451.0
15 TraesCS2A01G053200 chr2B 83.523 528 36 18 1292 1785 33848747 33849257 3.880000e-121 446.0
16 TraesCS2A01G053200 chr2B 85.812 437 36 13 804 1225 33848297 33848722 1.810000e-119 440.0
17 TraesCS2A01G053200 chr2B 75.346 795 133 37 1792 2563 33875308 33876062 1.900000e-84 324.0
18 TraesCS2A01G053200 chr2B 75.220 795 134 37 1792 2563 33887808 33888562 8.830000e-83 318.0
19 TraesCS2A01G053200 chr2B 94.527 201 11 0 4236 4436 33903151 33903351 1.480000e-80 311.0
20 TraesCS2A01G053200 chr2B 89.950 199 19 1 1366 1564 33905501 33905698 7.020000e-64 255.0
21 TraesCS2A01G053200 chr2B 85.271 258 24 10 2335 2579 33906424 33906680 2.530000e-63 254.0
22 TraesCS2A01G053200 chr2B 90.116 172 17 0 3588 3759 33886145 33886316 1.980000e-54 224.0
23 TraesCS2A01G053200 chr2B 78.528 326 55 12 5126 5450 33852130 33852441 3.340000e-47 200.0
24 TraesCS2A01G053200 chr2B 77.850 307 54 11 5144 5450 33856929 33857221 1.560000e-40 178.0
25 TraesCS2A01G053200 chr2B 89.381 113 8 1 1364 1472 33871854 33871966 7.380000e-29 139.0
26 TraesCS2A01G053200 chr2B 88.889 108 8 1 1364 1467 33887470 33887577 4.440000e-26 130.0
27 TraesCS2A01G053200 chr2B 88.889 108 8 1 1364 1467 33890695 33890802 4.440000e-26 130.0
28 TraesCS2A01G053200 chr2B 87.963 108 9 1 1364 1467 33874969 33875076 2.070000e-24 124.0
29 TraesCS2A01G053200 chr2D 91.125 1938 103 28 2836 4730 20779395 20781306 0.000000e+00 2562.0
30 TraesCS2A01G053200 chr2D 91.825 1786 99 15 3703 5464 20662342 20664104 0.000000e+00 2446.0
31 TraesCS2A01G053200 chr2D 94.909 766 34 3 2075 2838 20778602 20779364 0.000000e+00 1194.0
32 TraesCS2A01G053200 chr2D 94.915 590 19 3 2249 2838 20661248 20661826 0.000000e+00 913.0
33 TraesCS2A01G053200 chr2D 97.541 488 10 1 2836 3323 20661857 20662342 0.000000e+00 833.0
34 TraesCS2A01G053200 chr2D 88.133 691 54 9 1125 1792 20660558 20661243 0.000000e+00 797.0
35 TraesCS2A01G053200 chr2D 87.031 586 46 10 913 1485 20778025 20778593 7.720000e-178 634.0
36 TraesCS2A01G053200 chrUn 90.255 431 37 4 3758 4188 476104106 476103681 4.780000e-155 558.0
37 TraesCS2A01G053200 chrUn 85.088 114 11 6 4449 4558 357347001 357347112 1.610000e-20 111.0
38 TraesCS2A01G053200 chrUn 84.956 113 13 4 4449 4558 429844900 429845011 1.610000e-20 111.0
39 TraesCS2A01G053200 chr6B 93.103 87 5 1 4726 4812 278674613 278674698 5.750000e-25 126.0
40 TraesCS2A01G053200 chr6B 86.842 114 9 6 4449 4558 450091540 450091651 7.430000e-24 122.0
41 TraesCS2A01G053200 chr6B 97.368 38 1 0 1424 1461 157016796 157016759 1.270000e-06 65.8
42 TraesCS2A01G053200 chr6B 97.368 38 1 0 1424 1461 380978662 380978625 1.270000e-06 65.8
43 TraesCS2A01G053200 chr6B 97.368 38 1 0 1424 1461 399170078 399170041 1.270000e-06 65.8
44 TraesCS2A01G053200 chr6A 93.103 87 5 1 4726 4812 209391341 209391426 5.750000e-25 126.0
45 TraesCS2A01G053200 chr1B 93.023 86 4 2 4726 4811 401618954 401619037 2.070000e-24 124.0
46 TraesCS2A01G053200 chr4D 92.045 88 6 1 4726 4813 502014059 502014145 7.430000e-24 122.0
47 TraesCS2A01G053200 chr4D 85.965 114 10 6 4449 4558 206907804 206907915 3.460000e-22 117.0
48 TraesCS2A01G053200 chr6D 91.954 87 6 1 4726 4812 155601961 155602046 2.670000e-23 121.0
49 TraesCS2A01G053200 chr7B 89.474 95 8 2 4726 4819 13801939 13801846 9.610000e-23 119.0
50 TraesCS2A01G053200 chr5A 85.965 114 10 6 4449 4558 559031346 559031457 3.460000e-22 117.0
51 TraesCS2A01G053200 chr7D 90.000 90 8 1 4723 4812 401536774 401536686 1.240000e-21 115.0
52 TraesCS2A01G053200 chr7D 100.000 28 0 0 299 326 148118347 148118374 1.000000e-02 52.8
53 TraesCS2A01G053200 chr5B 97.368 38 1 0 1424 1461 613264485 613264448 1.270000e-06 65.8
54 TraesCS2A01G053200 chr5D 97.297 37 0 1 411 446 385448236 385448200 1.640000e-05 62.1
55 TraesCS2A01G053200 chr7A 100.000 28 0 0 412 439 443173595 443173568 1.000000e-02 52.8
56 TraesCS2A01G053200 chr1A 74.648 142 25 9 306 439 462772269 462772131 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G053200 chr2A 21260141 21265604 5463 False 10091.000000 10091 100.000000 1 5464 1 chr2A.!!$F1 5463
1 TraesCS2A01G053200 chr2B 33903151 33909578 6427 False 1150.250000 3781 90.582250 1366 5462 4 chr2B.!!$F4 4096
2 TraesCS2A01G053200 chr2B 33848297 33861059 12762 False 643.000000 1445 85.430889 804 5450 9 chr2B.!!$F1 4646
3 TraesCS2A01G053200 chr2B 33871854 33878531 6677 False 508.285714 1345 86.426000 1364 5463 7 chr2B.!!$F2 4099
4 TraesCS2A01G053200 chr2B 33885776 33894255 8479 False 469.250000 1345 86.871250 1364 5463 8 chr2B.!!$F3 4099
5 TraesCS2A01G053200 chr2D 20778025 20781306 3281 False 1463.333333 2562 91.021667 913 4730 3 chr2D.!!$F2 3817
6 TraesCS2A01G053200 chr2D 20660558 20664104 3546 False 1247.250000 2446 93.103500 1125 5464 4 chr2D.!!$F1 4339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 917 0.389948 GACTAAGGTCCACGGCACAG 60.390 60.0 0.00 0.00 36.53 3.66 F
1730 2833 0.235926 GAGCAGACACGCCTTTTGAC 59.764 55.0 0.00 0.00 0.00 3.18 F
1993 3105 0.322322 CATGCCCCACAAACAGCATT 59.678 50.0 0.00 0.00 43.17 3.56 F
2072 3194 0.605589 GTGGGGTGCTAGGACAACAC 60.606 60.0 16.81 18.34 0.00 3.32 F
3567 11305 1.176527 CATTTTGGAGGTCGGCATGT 58.823 50.0 0.00 0.00 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 3088 0.106335 CAAATGCTGTTTGTGGGGCA 59.894 50.000 6.90 0.0 39.06 5.36 R
3554 11291 1.153349 GGAGAACATGCCGACCTCC 60.153 63.158 0.00 0.0 36.94 4.30 R
3557 11294 1.243902 TTTTGGAGAACATGCCGACC 58.756 50.000 0.00 0.0 0.00 4.79 R
3742 11482 4.481368 AATGTAAGCGAACTATCACCCA 57.519 40.909 0.00 0.0 0.00 4.51 R
5385 13456 1.897560 AAGGTTCCGAAGCTCCAAAG 58.102 50.000 13.09 0.0 38.49 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.936759 TGAAAAGTTCACAGGATTTTAAAAAGT 57.063 25.926 4.44 0.00 34.08 2.66
182 183 7.813087 AGATATTTGGGGGATTTGAAAAAGT 57.187 32.000 0.00 0.00 0.00 2.66
185 186 6.957920 ATTTGGGGGATTTGAAAAAGTTTG 57.042 33.333 0.00 0.00 0.00 2.93
186 187 3.814625 TGGGGGATTTGAAAAAGTTTGC 58.185 40.909 0.00 0.00 0.00 3.68
187 188 2.805671 GGGGGATTTGAAAAAGTTTGCG 59.194 45.455 0.00 0.00 0.00 4.85
194 195 7.042389 GGGATTTGAAAAAGTTTGCGTATTTGA 60.042 33.333 0.00 0.00 0.00 2.69
198 199 9.878599 TTTGAAAAAGTTTGCGTATTTGAAAAA 57.121 22.222 0.00 0.00 0.00 1.94
201 202 9.536558 GAAAAAGTTTGCGTATTTGAAAAAGTT 57.463 25.926 0.00 0.00 0.00 2.66
203 204 7.820044 AAGTTTGCGTATTTGAAAAAGTTCA 57.180 28.000 0.00 0.00 42.12 3.18
204 205 8.419076 AAGTTTGCGTATTTGAAAAAGTTCAT 57.581 26.923 0.00 0.00 43.29 2.57
206 207 8.327429 AGTTTGCGTATTTGAAAAAGTTCATTG 58.673 29.630 0.00 0.00 43.29 2.82
209 210 6.478344 TGCGTATTTGAAAAAGTTCATTGCTT 59.522 30.769 0.00 0.00 43.29 3.91
228 229 9.910511 CATTGCTTTAAAAACTATCATGCATTC 57.089 29.630 0.00 0.00 0.00 2.67
230 231 8.692110 TGCTTTAAAAACTATCATGCATTCAG 57.308 30.769 0.00 0.00 0.00 3.02
231 232 8.522003 TGCTTTAAAAACTATCATGCATTCAGA 58.478 29.630 0.00 0.00 0.00 3.27
244 245 7.838884 TCATGCATTCAGAAAATATTTGTGGA 58.161 30.769 0.39 0.00 0.00 4.02
247 248 7.669427 TGCATTCAGAAAATATTTGTGGAACT 58.331 30.769 0.39 0.00 38.04 3.01
248 249 7.599621 TGCATTCAGAAAATATTTGTGGAACTG 59.400 33.333 0.39 5.69 38.04 3.16
249 250 7.814107 GCATTCAGAAAATATTTGTGGAACTGA 59.186 33.333 0.39 7.61 38.04 3.41
291 292 8.897872 AGAAAAGTTCATGCATTTGAAAATCT 57.102 26.923 4.34 4.09 37.36 2.40
292 293 9.333724 AGAAAAGTTCATGCATTTGAAAATCTT 57.666 25.926 4.34 2.30 37.36 2.40
294 295 8.665643 AAAGTTCATGCATTTGAAAATCTTCA 57.334 26.923 4.34 0.00 39.87 3.02
296 297 8.251750 AGTTCATGCATTTGAAAATCTTCATG 57.748 30.769 4.34 11.86 41.22 3.07
297 298 7.333423 AGTTCATGCATTTGAAAATCTTCATGG 59.667 33.333 4.34 0.00 41.22 3.66
298 299 6.937392 TCATGCATTTGAAAATCTTCATGGA 58.063 32.000 0.00 0.00 41.22 3.41
301 302 8.673711 CATGCATTTGAAAATCTTCATGGATTT 58.326 29.630 0.00 4.61 44.66 2.17
315 316 9.999660 TCTTCATGGATTTTGAAATTTTCATGA 57.000 25.926 12.39 17.18 39.84 3.07
334 335 8.768957 TTCATGAATTTGAAAAAGTTCACACA 57.231 26.923 3.38 0.00 43.52 3.72
371 372 6.810182 AGTGTAAATTTGAGAATGCTTCATGC 59.190 34.615 0.00 0.00 43.25 4.06
417 418 5.644977 AAAAGATAGGGCCTTCGAAAAAG 57.355 39.130 13.45 0.00 0.00 2.27
420 421 4.262617 AGATAGGGCCTTCGAAAAAGTTC 58.737 43.478 13.45 0.00 0.00 3.01
421 422 2.358322 AGGGCCTTCGAAAAAGTTCA 57.642 45.000 0.00 0.00 32.89 3.18
422 423 2.876581 AGGGCCTTCGAAAAAGTTCAT 58.123 42.857 0.00 0.00 32.89 2.57
423 424 2.558359 AGGGCCTTCGAAAAAGTTCATG 59.442 45.455 0.00 0.00 32.89 3.07
424 425 2.352715 GGGCCTTCGAAAAAGTTCATGG 60.353 50.000 0.84 0.00 32.89 3.66
426 427 3.193479 GGCCTTCGAAAAAGTTCATGGAT 59.807 43.478 0.00 0.00 32.89 3.41
429 430 5.119125 GCCTTCGAAAAAGTTCATGGATTTG 59.881 40.000 0.00 0.00 32.89 2.32
430 431 6.446318 CCTTCGAAAAAGTTCATGGATTTGA 58.554 36.000 0.00 0.00 32.89 2.69
431 432 6.922957 CCTTCGAAAAAGTTCATGGATTTGAA 59.077 34.615 0.00 0.00 32.89 2.69
432 433 7.437862 CCTTCGAAAAAGTTCATGGATTTGAAA 59.562 33.333 0.00 0.00 37.36 2.69
433 434 8.709386 TTCGAAAAAGTTCATGGATTTGAAAA 57.291 26.923 0.00 0.00 37.36 2.29
434 435 8.351495 TCGAAAAAGTTCATGGATTTGAAAAG 57.649 30.769 0.00 0.00 37.36 2.27
436 437 8.603181 CGAAAAAGTTCATGGATTTGAAAAGTT 58.397 29.630 0.00 0.00 37.36 2.66
437 438 9.920826 GAAAAAGTTCATGGATTTGAAAAGTTC 57.079 29.630 0.00 0.00 37.36 3.01
438 439 9.447157 AAAAAGTTCATGGATTTGAAAAGTTCA 57.553 25.926 0.00 0.00 37.36 3.18
439 440 9.617523 AAAAGTTCATGGATTTGAAAAGTTCAT 57.382 25.926 0.00 0.00 39.84 2.57
440 441 8.597662 AAGTTCATGGATTTGAAAAGTTCATG 57.402 30.769 0.00 0.00 39.84 3.07
442 443 8.423349 AGTTCATGGATTTGAAAAGTTCATGAA 58.577 29.630 12.60 12.60 39.84 2.57
443 444 9.044150 GTTCATGGATTTGAAAAGTTCATGAAA 57.956 29.630 16.34 0.00 39.84 2.69
444 445 9.781633 TTCATGGATTTGAAAAGTTCATGAAAT 57.218 25.926 10.35 6.06 39.84 2.17
445 446 9.781633 TCATGGATTTGAAAAGTTCATGAAATT 57.218 25.926 15.05 15.05 39.84 1.82
446 447 9.820229 CATGGATTTGAAAAGTTCATGAAATTG 57.180 29.630 20.76 2.08 39.84 2.32
447 448 8.961294 TGGATTTGAAAAGTTCATGAAATTGT 57.039 26.923 20.76 16.04 39.84 2.71
454 455 9.743057 TGAAAAGTTCATGAAATTGTAATTCGT 57.257 25.926 20.76 0.94 34.08 3.85
455 456 9.993881 GAAAAGTTCATGAAATTGTAATTCGTG 57.006 29.630 20.76 2.80 42.50 4.35
456 457 7.566858 AAGTTCATGAAATTGTAATTCGTGC 57.433 32.000 19.53 0.00 41.45 5.34
458 459 6.582295 AGTTCATGAAATTGTAATTCGTGCAC 59.418 34.615 10.35 6.82 41.45 4.57
459 460 6.252967 TCATGAAATTGTAATTCGTGCACT 57.747 33.333 16.19 0.00 41.45 4.40
460 461 7.371126 TCATGAAATTGTAATTCGTGCACTA 57.629 32.000 16.19 0.00 41.45 2.74
462 463 8.293157 TCATGAAATTGTAATTCGTGCACTAAA 58.707 29.630 16.19 9.59 41.45 1.85
463 464 8.910666 CATGAAATTGTAATTCGTGCACTAAAA 58.089 29.630 16.19 6.95 37.09 1.52
464 465 8.858003 TGAAATTGTAATTCGTGCACTAAAAA 57.142 26.923 16.19 4.36 0.00 1.94
489 490 9.634163 AAATAATTAATTCGAACAACCAGGAAC 57.366 29.630 3.39 0.00 0.00 3.62
491 492 6.894339 ATTAATTCGAACAACCAGGAACTT 57.106 33.333 0.00 0.00 34.60 2.66
493 494 5.592104 AATTCGAACAACCAGGAACTTTT 57.408 34.783 0.00 0.00 34.60 2.27
494 495 4.364415 TTCGAACAACCAGGAACTTTTG 57.636 40.909 0.00 0.00 34.60 2.44
496 497 3.625764 TCGAACAACCAGGAACTTTTGAG 59.374 43.478 0.00 0.00 34.60 3.02
497 498 3.625764 CGAACAACCAGGAACTTTTGAGA 59.374 43.478 0.00 0.00 34.60 3.27
499 500 5.392595 CGAACAACCAGGAACTTTTGAGAAA 60.393 40.000 0.00 0.00 34.60 2.52
500 501 5.993748 ACAACCAGGAACTTTTGAGAAAA 57.006 34.783 0.00 0.00 34.60 2.29
527 528 3.575965 AAAATCCGTTGACCATTCAGC 57.424 42.857 0.00 0.00 31.71 4.26
528 529 2.198827 AATCCGTTGACCATTCAGCA 57.801 45.000 0.00 0.00 32.64 4.41
530 531 2.198827 TCCGTTGACCATTCAGCATT 57.801 45.000 0.00 0.00 32.64 3.56
531 532 3.342377 TCCGTTGACCATTCAGCATTA 57.658 42.857 0.00 0.00 32.64 1.90
533 534 4.075682 TCCGTTGACCATTCAGCATTAAA 58.924 39.130 0.00 0.00 32.64 1.52
534 535 4.520874 TCCGTTGACCATTCAGCATTAAAA 59.479 37.500 0.00 0.00 32.64 1.52
535 536 5.010112 TCCGTTGACCATTCAGCATTAAAAA 59.990 36.000 0.00 0.00 32.64 1.94
586 587 7.940178 AAAACGTTCAGTTATTGGAAAATCC 57.060 32.000 0.00 0.00 43.37 3.01
587 588 5.638596 ACGTTCAGTTATTGGAAAATCCC 57.361 39.130 0.00 0.00 35.03 3.85
588 589 4.461431 ACGTTCAGTTATTGGAAAATCCCC 59.539 41.667 0.00 0.00 35.03 4.81
589 590 4.461081 CGTTCAGTTATTGGAAAATCCCCA 59.539 41.667 0.00 0.00 35.03 4.96
590 591 5.047660 CGTTCAGTTATTGGAAAATCCCCAA 60.048 40.000 0.00 0.00 46.48 4.12
591 592 6.517529 CGTTCAGTTATTGGAAAATCCCCAAA 60.518 38.462 0.00 0.00 45.67 3.28
593 594 7.566658 TCAGTTATTGGAAAATCCCCAAATT 57.433 32.000 0.00 0.00 45.67 1.82
594 595 7.983363 TCAGTTATTGGAAAATCCCCAAATTT 58.017 30.769 0.00 0.00 45.67 1.82
595 596 9.105844 TCAGTTATTGGAAAATCCCCAAATTTA 57.894 29.630 0.00 0.00 45.67 1.40
641 642 9.634163 AAAAATAGTCCATAATTTGAAACGTCC 57.366 29.630 0.00 0.00 0.00 4.79
642 643 7.931578 AATAGTCCATAATTTGAAACGTCCA 57.068 32.000 0.00 0.00 0.00 4.02
643 644 7.931578 ATAGTCCATAATTTGAAACGTCCAA 57.068 32.000 0.00 0.00 0.00 3.53
644 645 6.009115 AGTCCATAATTTGAAACGTCCAAC 57.991 37.500 3.23 0.00 0.00 3.77
645 646 5.533154 AGTCCATAATTTGAAACGTCCAACA 59.467 36.000 3.23 0.00 0.00 3.33
649 650 7.928706 TCCATAATTTGAAACGTCCAACAAATT 59.071 29.630 23.80 23.80 46.89 1.82
701 702 9.684448 TTCATAAACTTTGAAAATATTGCGTGA 57.316 25.926 0.00 0.00 30.44 4.35
708 709 6.624710 TTGAAAATATTGCGTGAAAATCGG 57.375 33.333 0.00 0.00 0.00 4.18
709 710 5.098893 TGAAAATATTGCGTGAAAATCGGG 58.901 37.500 0.00 0.00 0.00 5.14
710 711 4.974368 AAATATTGCGTGAAAATCGGGA 57.026 36.364 0.00 0.00 0.00 5.14
711 712 4.974368 AATATTGCGTGAAAATCGGGAA 57.026 36.364 0.00 0.00 0.00 3.97
712 713 4.974368 ATATTGCGTGAAAATCGGGAAA 57.026 36.364 0.00 0.00 0.00 3.13
713 714 3.651803 ATTGCGTGAAAATCGGGAAAA 57.348 38.095 0.00 0.00 0.00 2.29
714 715 3.438297 TTGCGTGAAAATCGGGAAAAA 57.562 38.095 0.00 0.00 0.00 1.94
718 719 4.036498 TGCGTGAAAATCGGGAAAAAGTTA 59.964 37.500 0.00 0.00 0.00 2.24
720 721 5.108141 GCGTGAAAATCGGGAAAAAGTTAAC 60.108 40.000 0.00 0.00 0.00 2.01
721 722 5.972382 CGTGAAAATCGGGAAAAAGTTAACA 59.028 36.000 8.61 0.00 0.00 2.41
722 723 6.472808 CGTGAAAATCGGGAAAAAGTTAACAA 59.527 34.615 8.61 0.00 0.00 2.83
724 725 8.657729 GTGAAAATCGGGAAAAAGTTAACAAAA 58.342 29.630 8.61 0.00 0.00 2.44
725 726 9.384764 TGAAAATCGGGAAAAAGTTAACAAAAT 57.615 25.926 8.61 0.00 0.00 1.82
729 730 6.793349 TCGGGAAAAAGTTAACAAAATTCGA 58.207 32.000 8.61 6.14 0.00 3.71
730 731 7.256286 TCGGGAAAAAGTTAACAAAATTCGAA 58.744 30.769 8.61 0.00 0.00 3.71
731 732 7.220491 TCGGGAAAAAGTTAACAAAATTCGAAC 59.780 33.333 8.61 0.00 0.00 3.95
732 733 7.515528 CGGGAAAAAGTTAACAAAATTCGAACC 60.516 37.037 8.61 3.64 0.00 3.62
734 735 8.325282 GGAAAAAGTTAACAAAATTCGAACCAG 58.675 33.333 8.61 0.00 0.00 4.00
736 737 8.989653 AAAAGTTAACAAAATTCGAACCAGAA 57.010 26.923 8.61 0.00 34.31 3.02
737 738 8.989653 AAAGTTAACAAAATTCGAACCAGAAA 57.010 26.923 8.61 0.00 33.43 2.52
739 740 8.989653 AGTTAACAAAATTCGAACCAGAAAAA 57.010 26.923 8.61 0.00 33.43 1.94
775 776 4.884744 TCACTGATTTTGAAAAGTTCGGGA 59.115 37.500 0.00 0.00 0.00 5.14
779 780 7.224557 CACTGATTTTGAAAAGTTCGGGAATTT 59.775 33.333 0.00 0.00 0.00 1.82
783 784 4.577834 TGAAAAGTTCGGGAATTTGGAC 57.422 40.909 0.00 0.00 0.00 4.02
785 786 4.037446 TGAAAAGTTCGGGAATTTGGACAG 59.963 41.667 0.00 0.00 0.00 3.51
787 788 3.223674 AGTTCGGGAATTTGGACAGTT 57.776 42.857 0.00 0.00 0.00 3.16
788 789 3.562182 AGTTCGGGAATTTGGACAGTTT 58.438 40.909 0.00 0.00 0.00 2.66
789 790 3.568430 AGTTCGGGAATTTGGACAGTTTC 59.432 43.478 0.00 0.00 0.00 2.78
790 791 3.216187 TCGGGAATTTGGACAGTTTCA 57.784 42.857 0.00 0.00 0.00 2.69
791 792 3.556999 TCGGGAATTTGGACAGTTTCAA 58.443 40.909 0.00 0.00 0.00 2.69
796 797 6.259829 CGGGAATTTGGACAGTTTCAAATTTT 59.740 34.615 20.27 8.41 46.88 1.82
916 917 0.389948 GACTAAGGTCCACGGCACAG 60.390 60.000 0.00 0.00 36.53 3.66
969 976 3.601443 TTCTTCTAGCTGCAACCTCTC 57.399 47.619 1.02 0.00 0.00 3.20
1203 1216 0.669318 TCTTCTTGCCACGGTAAGCG 60.669 55.000 8.88 3.52 37.66 4.68
1268 1281 4.692155 GGAAAATTGCAGATTGTTTGAGGG 59.308 41.667 0.00 0.00 0.00 4.30
1277 1290 2.969821 TTGTTTGAGGGGTGCATAGT 57.030 45.000 0.00 0.00 0.00 2.12
1279 1292 3.237268 TGTTTGAGGGGTGCATAGTTT 57.763 42.857 0.00 0.00 0.00 2.66
1282 1295 2.787473 TGAGGGGTGCATAGTTTCAG 57.213 50.000 0.00 0.00 0.00 3.02
1283 1296 2.265367 TGAGGGGTGCATAGTTTCAGA 58.735 47.619 0.00 0.00 0.00 3.27
1299 1312 5.934043 AGTTTCAGATTGTTCATGTCGATCA 59.066 36.000 16.81 0.00 0.00 2.92
1405 2391 5.106908 GGACTGTGAAGTTTCTGTAAGATGC 60.107 44.000 0.00 0.00 46.36 3.91
1413 2399 6.560253 AGTTTCTGTAAGATGCGATTGTTT 57.440 33.333 0.00 0.00 46.36 2.83
1456 2446 5.931146 AGAAGCTGAATGTAGTTTGTCTGAG 59.069 40.000 0.00 0.00 0.00 3.35
1467 2458 7.471721 TGTAGTTTGTCTGAGTGTTGAAAATG 58.528 34.615 0.00 0.00 0.00 2.32
1640 2742 6.374053 TCATCTGAAACTCGAAATTGCCATTA 59.626 34.615 0.00 0.00 0.00 1.90
1641 2743 6.757897 TCTGAAACTCGAAATTGCCATTAT 57.242 33.333 0.00 0.00 0.00 1.28
1642 2744 7.857734 TCTGAAACTCGAAATTGCCATTATA 57.142 32.000 0.00 0.00 0.00 0.98
1730 2833 0.235926 GAGCAGACACGCCTTTTGAC 59.764 55.000 0.00 0.00 0.00 3.18
1764 2868 1.666872 GTCTTCAACGACCGTGGGG 60.667 63.158 0.00 0.00 40.11 4.96
1818 2925 3.177643 GCATCATAAAATGCGCGTGTTAC 59.822 43.478 14.40 0.00 42.33 2.50
1840 2947 0.909133 ATCCCCAAATGGCCCAACAC 60.909 55.000 0.00 0.00 0.00 3.32
1843 2950 1.672898 CCAAATGGCCCAACACTGG 59.327 57.895 0.00 0.00 43.10 4.00
1844 2951 1.120795 CCAAATGGCCCAACACTGGT 61.121 55.000 0.00 0.00 41.72 4.00
1845 2952 1.626686 CAAATGGCCCAACACTGGTA 58.373 50.000 0.00 0.00 41.72 3.25
1846 2953 1.967066 CAAATGGCCCAACACTGGTAA 59.033 47.619 0.00 0.00 41.72 2.85
1847 2954 2.566724 CAAATGGCCCAACACTGGTAAT 59.433 45.455 0.00 0.00 41.72 1.89
1859 2966 3.096852 TGGTAATCCAGCCCAGTCA 57.903 52.632 0.00 0.00 39.03 3.41
1860 2967 1.367346 TGGTAATCCAGCCCAGTCAA 58.633 50.000 0.00 0.00 39.03 3.18
1864 2971 2.683211 AATCCAGCCCAGTCAAAAGT 57.317 45.000 0.00 0.00 0.00 2.66
1869 2976 3.826157 TCCAGCCCAGTCAAAAGTAATTG 59.174 43.478 0.00 0.00 0.00 2.32
1873 2980 3.578688 CCCAGTCAAAAGTAATTGCTGC 58.421 45.455 0.00 0.00 35.25 5.25
1879 2986 5.300286 AGTCAAAAGTAATTGCTGCAAGTCT 59.700 36.000 19.27 13.57 35.30 3.24
1882 2989 1.815003 AGTAATTGCTGCAAGTCTGGC 59.185 47.619 19.27 8.28 35.30 4.85
1901 3008 2.354805 GGCTAGACACTGTTACCCCAAG 60.355 54.545 0.00 0.00 0.00 3.61
1902 3009 2.565834 GCTAGACACTGTTACCCCAAGA 59.434 50.000 0.00 0.00 0.00 3.02
1904 3011 3.487120 AGACACTGTTACCCCAAGAAC 57.513 47.619 0.00 0.00 0.00 3.01
1905 3012 3.046374 AGACACTGTTACCCCAAGAACT 58.954 45.455 0.00 0.00 0.00 3.01
1907 3014 4.657039 AGACACTGTTACCCCAAGAACTTA 59.343 41.667 0.00 0.00 0.00 2.24
1908 3015 5.309806 AGACACTGTTACCCCAAGAACTTAT 59.690 40.000 0.00 0.00 0.00 1.73
1910 3017 5.768164 ACACTGTTACCCCAAGAACTTATTG 59.232 40.000 0.00 0.00 0.00 1.90
1911 3018 6.001460 CACTGTTACCCCAAGAACTTATTGA 58.999 40.000 0.00 0.00 0.00 2.57
1912 3019 6.659242 CACTGTTACCCCAAGAACTTATTGAT 59.341 38.462 0.00 0.00 0.00 2.57
1913 3020 7.827236 CACTGTTACCCCAAGAACTTATTGATA 59.173 37.037 0.00 0.00 0.00 2.15
1914 3021 7.827729 ACTGTTACCCCAAGAACTTATTGATAC 59.172 37.037 0.00 0.00 0.00 2.24
1915 3022 7.114095 TGTTACCCCAAGAACTTATTGATACC 58.886 38.462 0.00 0.00 0.00 2.73
1934 3041 7.851228 TGATACCATACCAGTATCATGATTCC 58.149 38.462 14.65 5.25 46.93 3.01
1936 3043 6.770286 ACCATACCAGTATCATGATTCCTT 57.230 37.500 14.65 0.00 0.00 3.36
1943 3050 8.859236 ACCAGTATCATGATTCCTTGAATATG 57.141 34.615 14.65 0.67 31.89 1.78
1947 3054 9.857656 AGTATCATGATTCCTTGAATATGTTGT 57.142 29.630 14.65 0.00 31.89 3.32
1952 3064 5.353956 TGATTCCTTGAATATGTTGTGACCG 59.646 40.000 0.00 0.00 31.89 4.79
1966 3078 5.221682 TGTTGTGACCGAGGGAAATAACTAA 60.222 40.000 0.00 0.00 0.00 2.24
1973 3085 4.275936 CCGAGGGAAATAACTAAATGGCTG 59.724 45.833 0.00 0.00 0.00 4.85
1976 3088 5.211201 AGGGAAATAACTAAATGGCTGCAT 58.789 37.500 0.50 0.00 0.00 3.96
1978 3090 4.746611 GGAAATAACTAAATGGCTGCATGC 59.253 41.667 11.82 11.82 41.94 4.06
1993 3105 0.322322 CATGCCCCACAAACAGCATT 59.678 50.000 0.00 0.00 43.17 3.56
2002 3117 5.279206 CCCCACAAACAGCATTTGTATTACA 60.279 40.000 16.12 0.00 40.30 2.41
2004 3119 6.446318 CCACAAACAGCATTTGTATTACAGT 58.554 36.000 16.12 0.00 40.30 3.55
2021 3136 6.592798 TTACAGTAGTGAAACGAAAAGTGG 57.407 37.500 4.09 0.00 45.86 4.00
2022 3137 3.311596 ACAGTAGTGAAACGAAAAGTGGC 59.688 43.478 4.09 0.00 45.86 5.01
2023 3138 2.876550 AGTAGTGAAACGAAAAGTGGCC 59.123 45.455 0.00 0.00 45.86 5.36
2036 3151 3.454371 AAGTGGCCGAGATATGTGTAC 57.546 47.619 0.00 0.00 0.00 2.90
2037 3152 2.667470 AGTGGCCGAGATATGTGTACT 58.333 47.619 0.00 0.00 0.00 2.73
2038 3153 2.362397 AGTGGCCGAGATATGTGTACTG 59.638 50.000 0.00 0.00 0.00 2.74
2040 3162 2.361119 TGGCCGAGATATGTGTACTGAC 59.639 50.000 0.00 0.00 0.00 3.51
2042 3164 3.181479 GGCCGAGATATGTGTACTGACAA 60.181 47.826 0.00 0.00 37.31 3.18
2072 3194 0.605589 GTGGGGTGCTAGGACAACAC 60.606 60.000 16.81 18.34 0.00 3.32
2101 3223 9.971922 AAGATGTTTGCTTGGCTTATTATATTC 57.028 29.630 0.00 0.00 0.00 1.75
2148 3298 4.470334 TGGCTGCAATTATTTTCTTCCC 57.530 40.909 0.50 0.00 0.00 3.97
2172 3324 6.708054 CCAGGACTATACATTCATTTCCAGAC 59.292 42.308 0.00 0.00 0.00 3.51
2238 3396 5.071788 TCCATTGGGTATCACTTCATACCTC 59.928 44.000 2.09 1.85 45.54 3.85
2241 3399 5.412617 TGGGTATCACTTCATACCTCCTA 57.587 43.478 9.07 0.00 45.54 2.94
2376 3663 7.178097 GGTTTGGTAGAAAGAAGGAGACTACTA 59.822 40.741 0.00 0.00 42.68 1.82
2496 3785 7.693132 TCAATATCCTCCCATCTGAAAATAGG 58.307 38.462 0.00 0.00 0.00 2.57
2589 3941 9.262358 CATAGATATCAGGTATCATCAATGCTG 57.738 37.037 5.32 0.00 41.43 4.41
2649 4001 7.952671 TGACATTGTAGAAGAGACACTAGTTT 58.047 34.615 0.00 0.00 0.00 2.66
2922 4309 3.263425 GTGGGAAGGACTATGGAAAGACA 59.737 47.826 0.00 0.00 0.00 3.41
2986 7599 4.041075 TCCAATACAAGGTGCTTACACTGA 59.959 41.667 0.00 0.00 46.57 3.41
2999 7612 4.154195 GCTTACACTGACATTCGATGGTTT 59.846 41.667 0.00 0.00 33.60 3.27
3004 7617 2.743664 CTGACATTCGATGGTTTCTGCA 59.256 45.455 0.00 0.00 33.60 4.41
3005 7618 3.346315 TGACATTCGATGGTTTCTGCAT 58.654 40.909 0.00 0.00 33.60 3.96
3133 7746 3.064545 GGTGAGTAGCAAGCATCACATTC 59.935 47.826 19.50 6.04 43.03 2.67
3167 10895 7.395190 TCTAGCTCATTTTGCATGTATGTTT 57.605 32.000 0.00 0.00 0.00 2.83
3296 11024 2.872245 TGAAGCTCGAAACAAGACCAAG 59.128 45.455 0.00 0.00 0.00 3.61
3429 11158 5.414454 CAGTTCGATCAATTCCCCTGTTTTA 59.586 40.000 0.00 0.00 0.00 1.52
3430 11159 6.095440 CAGTTCGATCAATTCCCCTGTTTTAT 59.905 38.462 0.00 0.00 0.00 1.40
3509 11238 9.865321 GACAGGTGATTTACTAATTACACACTA 57.135 33.333 0.00 0.00 33.24 2.74
3537 11274 6.838382 ACTACTCAAATACACCTCTGGTTTT 58.162 36.000 0.00 0.00 31.02 2.43
3541 11278 7.690256 ACTCAAATACACCTCTGGTTTTCTAT 58.310 34.615 0.00 0.00 31.02 1.98
3557 11294 9.238368 TGGTTTTCTATTAGTACCATTTTGGAG 57.762 33.333 0.00 0.00 40.96 3.86
3567 11305 1.176527 CATTTTGGAGGTCGGCATGT 58.823 50.000 0.00 0.00 0.00 3.21
3742 11482 6.823689 TCAAAACAACAGCTTCTCTAGAACTT 59.176 34.615 0.00 0.00 0.00 2.66
3762 11511 4.081087 ACTTGGGTGATAGTTCGCTTACAT 60.081 41.667 0.00 0.00 32.76 2.29
3766 11515 6.046593 TGGGTGATAGTTCGCTTACATTTAG 58.953 40.000 0.00 0.00 32.76 1.85
3767 11516 6.127281 TGGGTGATAGTTCGCTTACATTTAGA 60.127 38.462 0.00 0.00 32.76 2.10
3781 11539 8.283291 GCTTACATTTAGATAGGTTTCATTCCG 58.717 37.037 0.00 0.00 0.00 4.30
3791 11549 7.610305 AGATAGGTTTCATTCCGTTGTGTATTT 59.390 33.333 0.00 0.00 0.00 1.40
3924 11683 3.404899 GTCAGTCCCACATTTCCGTAAA 58.595 45.455 0.00 0.00 0.00 2.01
4161 11923 5.013599 ACAGGGACAAAGAGCTCTAGATTTT 59.986 40.000 18.59 3.96 0.00 1.82
4218 11980 6.240894 TCTCCTGTTTGACATTGAGCTTATT 58.759 36.000 0.00 0.00 31.10 1.40
4291 12057 8.230472 AGTGAATCTTGTCATTTTCTCTTGTT 57.770 30.769 0.00 0.00 0.00 2.83
4292 12058 8.348507 AGTGAATCTTGTCATTTTCTCTTGTTC 58.651 33.333 0.00 0.00 0.00 3.18
4293 12059 8.131100 GTGAATCTTGTCATTTTCTCTTGTTCA 58.869 33.333 0.00 0.00 0.00 3.18
4294 12060 8.853126 TGAATCTTGTCATTTTCTCTTGTTCAT 58.147 29.630 0.00 0.00 0.00 2.57
4295 12061 9.339492 GAATCTTGTCATTTTCTCTTGTTCATC 57.661 33.333 0.00 0.00 0.00 2.92
4296 12062 7.206981 TCTTGTCATTTTCTCTTGTTCATCC 57.793 36.000 0.00 0.00 0.00 3.51
4297 12063 7.000472 TCTTGTCATTTTCTCTTGTTCATCCT 59.000 34.615 0.00 0.00 0.00 3.24
4298 12064 6.564709 TGTCATTTTCTCTTGTTCATCCTG 57.435 37.500 0.00 0.00 0.00 3.86
4299 12065 6.064060 TGTCATTTTCTCTTGTTCATCCTGT 58.936 36.000 0.00 0.00 0.00 4.00
4308 12083 5.059161 TCTTGTTCATCCTGTTCAACTGAG 58.941 41.667 0.00 0.00 0.00 3.35
4325 12108 6.874134 TCAACTGAGTAAAATGTTAGGAGCTC 59.126 38.462 4.71 4.71 0.00 4.09
4375 12178 4.470462 CAAGAAGCATACAGTTTGAGCAC 58.530 43.478 0.00 0.00 0.00 4.40
4463 12274 1.693627 AGCTTCGATATCGTCCACCT 58.306 50.000 23.61 11.59 40.80 4.00
4469 12280 5.465724 GCTTCGATATCGTCCACCTATTTTT 59.534 40.000 23.61 0.00 40.80 1.94
4601 12489 3.904136 ATACTTGCAGCACACAACTTC 57.096 42.857 0.00 0.00 0.00 3.01
4638 12535 9.793252 AAAATTATGTACTCTTCATGCACATTC 57.207 29.630 0.00 0.00 32.39 2.67
4711 12613 8.325046 CCTAAATATTAGGGATTGAGAGGGAAG 58.675 40.741 8.07 0.00 0.00 3.46
4732 12636 6.998673 GGAAGCATATATCCATAATACACCCC 59.001 42.308 0.00 0.00 35.71 4.95
4752 12656 7.147532 ACACCCCCTGTTCTCTAAATATAAGAC 60.148 40.741 0.00 0.00 0.00 3.01
4753 12657 6.906901 ACCCCCTGTTCTCTAAATATAAGACA 59.093 38.462 0.00 0.00 0.00 3.41
4789 12784 7.237173 TCAATTTAAACTGCCAAAACGTTTTG 58.763 30.769 35.79 35.79 45.34 2.44
4942 12952 3.620488 TGTTTCAGTCTCCTGCAAAAGT 58.380 40.909 0.00 0.00 38.66 2.66
4976 12986 7.648142 TGTAATCAAAATTTGACTGGACACTC 58.352 34.615 10.91 0.00 43.48 3.51
5000 13012 5.178067 CGCAATCTGCCTTTCTTTTGAATTT 59.822 36.000 0.00 0.00 41.12 1.82
5074 13086 8.859090 CCCAATATGTATTTCTTTTATCTGCCA 58.141 33.333 0.00 0.00 0.00 4.92
5166 13237 9.195411 GTTCAAATATTGTGTGTGAAATCATGT 57.805 29.630 1.95 0.00 30.49 3.21
5168 13239 9.761504 TCAAATATTGTGTGTGAAATCATGTTT 57.238 25.926 0.00 0.00 0.00 2.83
5203 13274 7.920738 ACATTCTTGTAGAACTTCTGTGTTTC 58.079 34.615 1.17 0.00 37.00 2.78
5215 13286 5.359576 ACTTCTGTGTTTCAACCAAAGCATA 59.640 36.000 0.00 0.00 0.00 3.14
5252 13323 6.717997 ACGGGAAAAGTGAATTAGTTGGTATT 59.282 34.615 0.00 0.00 0.00 1.89
5280 13351 1.271102 GCCCCGCAACTAACATTTGAA 59.729 47.619 0.00 0.00 0.00 2.69
5293 13364 1.205417 CATTTGAAGCTTTGGGCCGAT 59.795 47.619 0.00 0.00 43.05 4.18
5342 13413 2.961741 TGCTCTAGACAGATGGATGGTC 59.038 50.000 0.00 0.00 0.00 4.02
5349 13420 1.753649 ACAGATGGATGGTCGACTGAG 59.246 52.381 16.46 0.00 0.00 3.35
5385 13456 5.278022 CCTTCCCTAGCTTTAATGATTTCGC 60.278 44.000 0.00 0.00 0.00 4.70
5405 13476 2.230660 CTTTGGAGCTTCGGAACCTTT 58.769 47.619 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.936759 ACTTTTTAAAATCCTGTGAACTTTTCA 57.063 25.926 0.55 0.00 37.33 2.69
135 136 8.839310 TCTTTGGAAAACATGAACTTTTTCAA 57.161 26.923 16.55 12.86 45.01 2.69
155 156 8.860780 TTTTTCAAATCCCCCAAATATCTTTG 57.139 30.769 0.00 0.00 41.22 2.77
156 157 8.668653 ACTTTTTCAAATCCCCCAAATATCTTT 58.331 29.630 0.00 0.00 0.00 2.52
162 163 5.301551 GCAAACTTTTTCAAATCCCCCAAAT 59.698 36.000 0.00 0.00 0.00 2.32
168 169 6.779115 AATACGCAAACTTTTTCAAATCCC 57.221 33.333 0.00 0.00 0.00 3.85
170 171 9.695884 TTTCAAATACGCAAACTTTTTCAAATC 57.304 25.926 0.00 0.00 0.00 2.17
172 173 9.878599 TTTTTCAAATACGCAAACTTTTTCAAA 57.121 22.222 0.00 0.00 0.00 2.69
174 175 8.713271 ACTTTTTCAAATACGCAAACTTTTTCA 58.287 25.926 0.00 0.00 0.00 2.69
175 176 9.536558 AACTTTTTCAAATACGCAAACTTTTTC 57.463 25.926 0.00 0.00 0.00 2.29
182 183 7.010923 AGCAATGAACTTTTTCAAATACGCAAA 59.989 29.630 0.00 0.00 45.01 3.68
185 186 6.452244 AGCAATGAACTTTTTCAAATACGC 57.548 33.333 0.00 0.00 45.01 4.42
198 199 9.143631 GCATGATAGTTTTTAAAGCAATGAACT 57.856 29.630 0.00 6.10 31.56 3.01
201 202 9.656040 AATGCATGATAGTTTTTAAAGCAATGA 57.344 25.926 0.00 0.00 32.83 2.57
203 204 9.656040 TGAATGCATGATAGTTTTTAAAGCAAT 57.344 25.926 0.00 0.00 32.83 3.56
204 205 9.142515 CTGAATGCATGATAGTTTTTAAAGCAA 57.857 29.630 0.00 0.00 32.83 3.91
206 207 8.915871 TCTGAATGCATGATAGTTTTTAAAGC 57.084 30.769 0.00 0.00 0.00 3.51
220 221 8.385111 GTTCCACAAATATTTTCTGAATGCATG 58.615 33.333 0.00 0.00 0.00 4.06
223 224 7.814107 TCAGTTCCACAAATATTTTCTGAATGC 59.186 33.333 0.00 0.00 0.00 3.56
265 266 9.333724 AGATTTTCAAATGCATGAACTTTTCTT 57.666 25.926 0.00 0.00 38.95 2.52
268 269 9.111613 TGAAGATTTTCAAATGCATGAACTTTT 57.888 25.926 0.00 0.00 40.26 2.27
269 270 8.665643 TGAAGATTTTCAAATGCATGAACTTT 57.334 26.923 0.00 0.00 40.26 2.66
270 271 8.717821 CATGAAGATTTTCAAATGCATGAACTT 58.282 29.630 0.00 2.14 45.82 2.66
272 273 7.332430 TCCATGAAGATTTTCAAATGCATGAAC 59.668 33.333 0.00 0.00 45.82 3.18
275 276 7.786178 ATCCATGAAGATTTTCAAATGCATG 57.214 32.000 0.00 0.00 45.82 4.06
276 277 8.801882 AAATCCATGAAGATTTTCAAATGCAT 57.198 26.923 2.39 0.00 45.82 3.96
309 310 8.768957 TGTGTGAACTTTTTCAAATTCATGAA 57.231 26.923 11.26 11.26 43.52 2.57
394 395 5.538813 ACTTTTTCGAAGGCCCTATCTTTTT 59.461 36.000 0.00 0.00 0.00 1.94
395 396 5.077564 ACTTTTTCGAAGGCCCTATCTTTT 58.922 37.500 0.00 0.00 0.00 2.27
396 397 4.663334 ACTTTTTCGAAGGCCCTATCTTT 58.337 39.130 0.00 0.00 0.00 2.52
397 398 4.302559 ACTTTTTCGAAGGCCCTATCTT 57.697 40.909 0.00 0.00 0.00 2.40
399 400 4.007659 TGAACTTTTTCGAAGGCCCTATC 58.992 43.478 0.00 0.00 34.04 2.08
403 404 2.352715 CCATGAACTTTTTCGAAGGCCC 60.353 50.000 0.00 0.00 34.04 5.80
404 405 2.556622 TCCATGAACTTTTTCGAAGGCC 59.443 45.455 0.00 0.00 34.04 5.19
407 408 7.928908 TTCAAATCCATGAACTTTTTCGAAG 57.071 32.000 0.00 0.00 34.50 3.79
408 409 8.709386 TTTTCAAATCCATGAACTTTTTCGAA 57.291 26.923 0.00 0.00 38.95 3.71
409 410 7.978975 ACTTTTCAAATCCATGAACTTTTTCGA 59.021 29.630 0.00 0.00 38.95 3.71
410 411 8.130307 ACTTTTCAAATCCATGAACTTTTTCG 57.870 30.769 0.00 0.00 38.95 3.46
411 412 9.920826 GAACTTTTCAAATCCATGAACTTTTTC 57.079 29.630 0.00 0.00 38.95 2.29
412 413 9.447157 TGAACTTTTCAAATCCATGAACTTTTT 57.553 25.926 0.00 0.00 38.95 1.94
414 415 9.048446 CATGAACTTTTCAAATCCATGAACTTT 57.952 29.630 0.00 0.00 43.95 2.66
416 417 7.954835 TCATGAACTTTTCAAATCCATGAACT 58.045 30.769 0.00 0.00 43.95 3.01
417 418 8.592105 TTCATGAACTTTTCAAATCCATGAAC 57.408 30.769 3.38 0.00 43.95 3.18
420 421 9.820229 CAATTTCATGAACTTTTCAAATCCATG 57.180 29.630 7.89 0.00 43.95 3.66
421 422 9.563748 ACAATTTCATGAACTTTTCAAATCCAT 57.436 25.926 7.89 0.00 43.95 3.41
422 423 8.961294 ACAATTTCATGAACTTTTCAAATCCA 57.039 26.923 7.89 0.00 43.95 3.41
429 430 9.993881 CACGAATTACAATTTCATGAACTTTTC 57.006 29.630 7.89 8.73 0.00 2.29
430 431 8.487176 GCACGAATTACAATTTCATGAACTTTT 58.513 29.630 7.89 5.05 0.00 2.27
431 432 7.651304 TGCACGAATTACAATTTCATGAACTTT 59.349 29.630 7.89 2.25 0.00 2.66
432 433 7.114811 GTGCACGAATTACAATTTCATGAACTT 59.885 33.333 7.89 6.42 0.00 2.66
433 434 6.582295 GTGCACGAATTACAATTTCATGAACT 59.418 34.615 7.89 0.00 0.00 3.01
434 435 6.582295 AGTGCACGAATTACAATTTCATGAAC 59.418 34.615 12.01 0.00 0.00 3.18
436 437 6.252967 AGTGCACGAATTACAATTTCATGA 57.747 33.333 12.01 0.00 0.00 3.07
437 438 8.446489 TTTAGTGCACGAATTACAATTTCATG 57.554 30.769 13.36 0.00 0.00 3.07
438 439 9.469807 TTTTTAGTGCACGAATTACAATTTCAT 57.530 25.926 13.36 0.00 0.00 2.57
439 440 8.858003 TTTTTAGTGCACGAATTACAATTTCA 57.142 26.923 13.36 0.00 0.00 2.69
463 464 9.634163 GTTCCTGGTTGTTCGAATTAATTATTT 57.366 29.630 0.00 0.00 0.00 1.40
464 465 9.020731 AGTTCCTGGTTGTTCGAATTAATTATT 57.979 29.630 0.00 0.00 0.00 1.40
465 466 8.575649 AGTTCCTGGTTGTTCGAATTAATTAT 57.424 30.769 0.00 0.00 0.00 1.28
466 467 7.989416 AGTTCCTGGTTGTTCGAATTAATTA 57.011 32.000 0.00 0.00 0.00 1.40
468 469 6.894339 AAGTTCCTGGTTGTTCGAATTAAT 57.106 33.333 0.00 0.00 0.00 1.40
472 473 4.642885 TCAAAAGTTCCTGGTTGTTCGAAT 59.357 37.500 0.00 0.00 0.00 3.34
474 475 3.611970 TCAAAAGTTCCTGGTTGTTCGA 58.388 40.909 0.00 0.00 0.00 3.71
475 476 3.625764 TCTCAAAAGTTCCTGGTTGTTCG 59.374 43.478 0.00 0.00 0.00 3.95
476 477 5.576447 TTCTCAAAAGTTCCTGGTTGTTC 57.424 39.130 0.00 0.00 0.00 3.18
477 478 5.993748 TTTCTCAAAAGTTCCTGGTTGTT 57.006 34.783 0.00 0.00 0.00 2.83
478 479 5.965922 CTTTTCTCAAAAGTTCCTGGTTGT 58.034 37.500 0.00 0.00 42.23 3.32
508 509 2.513753 TGCTGAATGGTCAACGGATTT 58.486 42.857 0.00 0.00 31.88 2.17
511 512 2.198827 AATGCTGAATGGTCAACGGA 57.801 45.000 0.00 0.00 31.88 4.69
512 513 4.433186 TTTAATGCTGAATGGTCAACGG 57.567 40.909 0.00 0.00 31.88 4.44
560 561 9.634163 GGATTTTCCAATAACTGAACGTTTTAT 57.366 29.630 0.46 0.00 36.28 1.40
561 562 8.083462 GGGATTTTCCAATAACTGAACGTTTTA 58.917 33.333 0.46 0.00 38.64 1.52
562 563 6.926826 GGGATTTTCCAATAACTGAACGTTTT 59.073 34.615 0.46 0.00 38.64 2.43
563 564 6.452242 GGGATTTTCCAATAACTGAACGTTT 58.548 36.000 0.46 0.00 38.64 3.60
564 565 5.047590 GGGGATTTTCCAATAACTGAACGTT 60.048 40.000 0.00 0.00 38.64 3.99
565 566 4.461431 GGGGATTTTCCAATAACTGAACGT 59.539 41.667 0.00 0.00 38.64 3.99
566 567 4.461081 TGGGGATTTTCCAATAACTGAACG 59.539 41.667 0.00 0.00 38.64 3.95
567 568 5.993748 TGGGGATTTTCCAATAACTGAAC 57.006 39.130 0.00 0.00 38.64 3.18
569 570 7.566658 AATTTGGGGATTTTCCAATAACTGA 57.433 32.000 0.00 0.00 43.01 3.41
618 619 7.931578 TGGACGTTTCAAATTATGGACTATT 57.068 32.000 0.00 0.00 0.00 1.73
619 620 7.392113 TGTTGGACGTTTCAAATTATGGACTAT 59.608 33.333 6.81 0.00 0.00 2.12
621 622 5.533154 TGTTGGACGTTTCAAATTATGGACT 59.467 36.000 6.81 0.00 0.00 3.85
622 623 5.764131 TGTTGGACGTTTCAAATTATGGAC 58.236 37.500 6.81 0.00 0.00 4.02
623 624 6.392625 TTGTTGGACGTTTCAAATTATGGA 57.607 33.333 6.81 0.00 0.00 3.41
624 625 7.650834 ATTTGTTGGACGTTTCAAATTATGG 57.349 32.000 6.81 0.00 37.25 2.74
675 676 9.684448 TCACGCAATATTTTCAAAGTTTATGAA 57.316 25.926 0.00 0.00 35.11 2.57
676 677 9.684448 TTCACGCAATATTTTCAAAGTTTATGA 57.316 25.926 0.00 0.00 0.00 2.15
680 681 9.862585 GATTTTCACGCAATATTTTCAAAGTTT 57.137 25.926 0.00 0.00 0.00 2.66
681 682 8.213812 CGATTTTCACGCAATATTTTCAAAGTT 58.786 29.630 0.00 0.00 0.00 2.66
682 683 7.148820 CCGATTTTCACGCAATATTTTCAAAGT 60.149 33.333 0.00 0.00 0.00 2.66
683 684 7.166168 CCGATTTTCACGCAATATTTTCAAAG 58.834 34.615 0.00 0.00 0.00 2.77
684 685 6.090088 CCCGATTTTCACGCAATATTTTCAAA 59.910 34.615 0.00 0.00 0.00 2.69
686 687 5.098893 CCCGATTTTCACGCAATATTTTCA 58.901 37.500 0.00 0.00 0.00 2.69
693 694 3.651803 TTTTCCCGATTTTCACGCAAT 57.348 38.095 0.00 0.00 0.00 3.56
694 695 3.181485 ACTTTTTCCCGATTTTCACGCAA 60.181 39.130 0.00 0.00 0.00 4.85
695 696 2.359531 ACTTTTTCCCGATTTTCACGCA 59.640 40.909 0.00 0.00 0.00 5.24
697 698 5.972382 TGTTAACTTTTTCCCGATTTTCACG 59.028 36.000 7.22 0.00 0.00 4.35
699 700 8.773404 TTTTGTTAACTTTTTCCCGATTTTCA 57.227 26.923 7.22 0.00 0.00 2.69
703 704 7.921745 TCGAATTTTGTTAACTTTTTCCCGATT 59.078 29.630 7.22 0.00 0.00 3.34
704 705 7.427214 TCGAATTTTGTTAACTTTTTCCCGAT 58.573 30.769 7.22 0.00 0.00 4.18
705 706 6.793349 TCGAATTTTGTTAACTTTTTCCCGA 58.207 32.000 7.22 5.46 0.00 5.14
708 709 8.187354 TGGTTCGAATTTTGTTAACTTTTTCC 57.813 30.769 0.00 0.00 0.00 3.13
709 710 9.078753 TCTGGTTCGAATTTTGTTAACTTTTTC 57.921 29.630 0.00 4.52 0.00 2.29
710 711 8.989653 TCTGGTTCGAATTTTGTTAACTTTTT 57.010 26.923 0.00 0.00 0.00 1.94
711 712 8.989653 TTCTGGTTCGAATTTTGTTAACTTTT 57.010 26.923 0.00 0.00 0.00 2.27
712 713 8.989653 TTTCTGGTTCGAATTTTGTTAACTTT 57.010 26.923 0.00 0.00 0.00 2.66
713 714 8.989653 TTTTCTGGTTCGAATTTTGTTAACTT 57.010 26.923 0.00 0.00 0.00 2.66
714 715 8.989653 TTTTTCTGGTTCGAATTTTGTTAACT 57.010 26.923 0.00 0.00 0.00 2.24
751 752 5.358442 TCCCGAACTTTTCAAAATCAGTGAA 59.642 36.000 0.00 0.00 33.21 3.18
752 753 4.884744 TCCCGAACTTTTCAAAATCAGTGA 59.115 37.500 0.00 0.00 0.00 3.41
753 754 5.181690 TCCCGAACTTTTCAAAATCAGTG 57.818 39.130 0.00 0.00 0.00 3.66
755 756 7.307337 CCAAATTCCCGAACTTTTCAAAATCAG 60.307 37.037 0.00 0.00 0.00 2.90
757 758 6.704050 TCCAAATTCCCGAACTTTTCAAAATC 59.296 34.615 0.00 0.00 0.00 2.17
758 759 6.481976 GTCCAAATTCCCGAACTTTTCAAAAT 59.518 34.615 0.00 0.00 0.00 1.82
759 760 5.813157 GTCCAAATTCCCGAACTTTTCAAAA 59.187 36.000 0.00 0.00 0.00 2.44
760 761 5.105310 TGTCCAAATTCCCGAACTTTTCAAA 60.105 36.000 0.00 0.00 0.00 2.69
761 762 4.402793 TGTCCAAATTCCCGAACTTTTCAA 59.597 37.500 0.00 0.00 0.00 2.69
762 763 3.954904 TGTCCAAATTCCCGAACTTTTCA 59.045 39.130 0.00 0.00 0.00 2.69
763 764 4.037565 ACTGTCCAAATTCCCGAACTTTTC 59.962 41.667 0.00 0.00 0.00 2.29
765 766 3.562182 ACTGTCCAAATTCCCGAACTTT 58.438 40.909 0.00 0.00 0.00 2.66
766 767 3.223674 ACTGTCCAAATTCCCGAACTT 57.776 42.857 0.00 0.00 0.00 2.66
771 772 4.314740 TTTGAAACTGTCCAAATTCCCG 57.685 40.909 4.79 0.00 0.00 5.14
772 773 7.566760 AAAATTTGAAACTGTCCAAATTCCC 57.433 32.000 22.48 0.00 46.27 3.97
779 780 9.474920 GTGATTCATAAAATTTGAAACTGTCCA 57.525 29.630 0.00 0.00 36.72 4.02
842 843 9.902196 TTCGTTGGTTATCTTATTTTTCCTTTC 57.098 29.630 0.00 0.00 0.00 2.62
878 879 7.711339 CCTTAGTCATGGTGATACCTCTAAAAC 59.289 40.741 0.00 0.00 39.58 2.43
882 883 6.027025 ACCTTAGTCATGGTGATACCTCTA 57.973 41.667 0.00 0.00 39.58 2.43
884 885 4.039366 GGACCTTAGTCATGGTGATACCTC 59.961 50.000 0.00 0.00 45.48 3.85
888 889 3.383505 CGTGGACCTTAGTCATGGTGATA 59.616 47.826 0.00 0.00 45.48 2.15
891 892 1.405526 CCGTGGACCTTAGTCATGGTG 60.406 57.143 0.00 0.00 45.48 4.17
969 976 0.180406 CAGGTTCGGGGTGGGATAAG 59.820 60.000 0.00 0.00 0.00 1.73
1095 1105 3.491652 GAACAGCCCGCTTCGAGC 61.492 66.667 0.00 0.00 38.02 5.03
1172 1185 1.205893 GCAAGAAGAGATGACCCGAGT 59.794 52.381 0.00 0.00 0.00 4.18
1203 1216 1.216122 CATCGAAGCAAGCTAGAGCC 58.784 55.000 0.00 0.00 43.38 4.70
1268 1281 5.627499 TGAACAATCTGAAACTATGCACC 57.373 39.130 0.00 0.00 0.00 5.01
1277 1290 6.990341 ATGATCGACATGAACAATCTGAAA 57.010 33.333 0.00 0.00 37.87 2.69
1279 1292 6.809869 AGTATGATCGACATGAACAATCTGA 58.190 36.000 0.00 0.00 39.77 3.27
1282 1295 7.436376 TCTCAAGTATGATCGACATGAACAATC 59.564 37.037 0.00 0.00 39.77 2.67
1283 1296 7.267857 TCTCAAGTATGATCGACATGAACAAT 58.732 34.615 0.00 0.00 39.77 2.71
1405 2391 9.477484 AAATCCTACTAGCTGTATAAACAATCG 57.523 33.333 0.00 0.00 34.49 3.34
1413 2399 9.015367 CAGCTTCTAAATCCTACTAGCTGTATA 57.985 37.037 11.82 0.00 45.44 1.47
1456 2446 6.197096 CAGTTACAGTTCTGCATTTTCAACAC 59.803 38.462 0.00 0.00 0.00 3.32
1467 2458 6.210287 ACTATCTACCAGTTACAGTTCTGC 57.790 41.667 0.00 0.00 0.00 4.26
1704 2807 2.049156 CGTGTCTGCTCTTCGGCA 60.049 61.111 0.00 0.00 40.15 5.69
1730 2833 4.058124 TGAAGACCACGAGAATTGTCTTG 58.942 43.478 10.37 6.70 45.39 3.02
1759 2862 4.015872 TCTGTGTCTGAAATTACCCCAC 57.984 45.455 0.00 0.00 0.00 4.61
1764 2868 7.331934 TGCTACAGAATCTGTGTCTGAAATTAC 59.668 37.037 24.74 2.49 45.01 1.89
1812 2919 1.134175 CCATTTGGGGATGCGTAACAC 59.866 52.381 0.00 0.00 0.00 3.32
1818 2925 3.539791 GGGCCATTTGGGGATGCG 61.540 66.667 4.39 0.00 37.04 4.73
1825 2932 1.672898 CCAGTGTTGGGCCATTTGG 59.327 57.895 7.26 9.37 41.05 3.28
1843 2950 3.421844 ACTTTTGACTGGGCTGGATTAC 58.578 45.455 0.00 0.00 0.00 1.89
1844 2951 3.806949 ACTTTTGACTGGGCTGGATTA 57.193 42.857 0.00 0.00 0.00 1.75
1845 2952 2.683211 ACTTTTGACTGGGCTGGATT 57.317 45.000 0.00 0.00 0.00 3.01
1846 2953 3.806949 TTACTTTTGACTGGGCTGGAT 57.193 42.857 0.00 0.00 0.00 3.41
1847 2954 3.806949 ATTACTTTTGACTGGGCTGGA 57.193 42.857 0.00 0.00 0.00 3.86
1851 2958 3.578688 CAGCAATTACTTTTGACTGGGC 58.421 45.455 0.00 0.00 32.22 5.36
1853 2960 4.241590 TGCAGCAATTACTTTTGACTGG 57.758 40.909 0.00 0.00 34.34 4.00
1854 2961 5.284079 ACTTGCAGCAATTACTTTTGACTG 58.716 37.500 8.67 0.00 35.60 3.51
1855 2962 5.300286 AGACTTGCAGCAATTACTTTTGACT 59.700 36.000 8.67 0.00 0.00 3.41
1856 2963 5.400485 CAGACTTGCAGCAATTACTTTTGAC 59.600 40.000 8.67 0.00 0.00 3.18
1857 2964 5.507817 CCAGACTTGCAGCAATTACTTTTGA 60.508 40.000 8.67 0.00 0.00 2.69
1858 2965 4.682860 CCAGACTTGCAGCAATTACTTTTG 59.317 41.667 8.67 0.00 0.00 2.44
1859 2966 4.797275 GCCAGACTTGCAGCAATTACTTTT 60.797 41.667 8.67 0.00 0.00 2.27
1860 2967 3.305608 GCCAGACTTGCAGCAATTACTTT 60.306 43.478 8.67 0.00 0.00 2.66
1864 2971 2.205022 AGCCAGACTTGCAGCAATTA 57.795 45.000 8.67 0.00 0.00 1.40
1869 2976 2.761071 GTCTAGCCAGACTTGCAGC 58.239 57.895 4.92 0.00 46.56 5.25
1873 2980 7.802631 GGGTAACAGTGTCTAGCCAGACTTG 62.803 52.000 13.55 13.18 45.52 3.16
1879 2986 1.272807 GGGGTAACAGTGTCTAGCCA 58.727 55.000 23.24 0.00 37.41 4.75
1882 2989 4.283722 AGTTCTTGGGGTAACAGTGTCTAG 59.716 45.833 0.00 0.00 39.74 2.43
1889 2996 7.282450 GGTATCAATAAGTTCTTGGGGTAACAG 59.718 40.741 1.58 0.00 39.74 3.16
1892 2999 7.273457 TGGTATCAATAAGTTCTTGGGGTAA 57.727 36.000 1.58 0.00 0.00 2.85
1910 3017 8.083828 AGGAATCATGATACTGGTATGGTATC 57.916 38.462 9.04 0.00 43.22 2.24
1911 3018 8.324306 CAAGGAATCATGATACTGGTATGGTAT 58.676 37.037 9.04 0.00 33.22 2.73
1912 3019 7.512402 TCAAGGAATCATGATACTGGTATGGTA 59.488 37.037 9.04 0.00 0.00 3.25
1913 3020 6.329986 TCAAGGAATCATGATACTGGTATGGT 59.670 38.462 9.04 0.00 0.00 3.55
1914 3021 6.772605 TCAAGGAATCATGATACTGGTATGG 58.227 40.000 9.04 0.00 0.00 2.74
1915 3022 8.859236 ATTCAAGGAATCATGATACTGGTATG 57.141 34.615 9.04 6.11 0.00 2.39
1934 3041 3.623060 CCCTCGGTCACAACATATTCAAG 59.377 47.826 0.00 0.00 0.00 3.02
1936 3043 2.835156 TCCCTCGGTCACAACATATTCA 59.165 45.455 0.00 0.00 0.00 2.57
1943 3050 3.671716 AGTTATTTCCCTCGGTCACAAC 58.328 45.455 0.00 0.00 0.00 3.32
1947 3054 5.433526 CCATTTAGTTATTTCCCTCGGTCA 58.566 41.667 0.00 0.00 0.00 4.02
1952 3064 4.644685 TGCAGCCATTTAGTTATTTCCCTC 59.355 41.667 0.00 0.00 0.00 4.30
1973 3085 2.047939 GCTGTTTGTGGGGCATGC 60.048 61.111 9.90 9.90 0.00 4.06
1976 3088 0.106335 CAAATGCTGTTTGTGGGGCA 59.894 50.000 6.90 0.00 39.06 5.36
1978 3090 3.959535 ATACAAATGCTGTTTGTGGGG 57.040 42.857 22.58 1.33 42.05 4.96
1979 3091 5.777802 TGTAATACAAATGCTGTTTGTGGG 58.222 37.500 22.58 1.61 42.05 4.61
1982 3094 8.289618 CACTACTGTAATACAAATGCTGTTTGT 58.710 33.333 19.56 19.56 44.03 2.83
1993 3105 9.316730 ACTTTTCGTTTCACTACTGTAATACAA 57.683 29.630 0.00 0.00 0.00 2.41
2002 3117 2.876550 GGCCACTTTTCGTTTCACTACT 59.123 45.455 0.00 0.00 0.00 2.57
2004 3119 1.868498 CGGCCACTTTTCGTTTCACTA 59.132 47.619 2.24 0.00 0.00 2.74
2018 3133 2.361119 TCAGTACACATATCTCGGCCAC 59.639 50.000 2.24 0.00 0.00 5.01
2021 3136 3.710326 TGTCAGTACACATATCTCGGC 57.290 47.619 0.00 0.00 0.00 5.54
2022 3137 4.993905 TGTTGTCAGTACACATATCTCGG 58.006 43.478 0.00 0.00 34.61 4.63
2023 3138 5.037385 CCTGTTGTCAGTACACATATCTCG 58.963 45.833 0.00 0.00 39.82 4.04
2036 3151 1.404717 CCACTCCGATCCTGTTGTCAG 60.405 57.143 0.00 0.00 41.01 3.51
2037 3152 0.608130 CCACTCCGATCCTGTTGTCA 59.392 55.000 0.00 0.00 0.00 3.58
2038 3153 0.108138 CCCACTCCGATCCTGTTGTC 60.108 60.000 0.00 0.00 0.00 3.18
2040 3162 1.221840 CCCCACTCCGATCCTGTTG 59.778 63.158 0.00 0.00 0.00 3.33
2042 3164 1.990060 CACCCCACTCCGATCCTGT 60.990 63.158 0.00 0.00 0.00 4.00
2045 3167 1.749334 CTAGCACCCCACTCCGATCC 61.749 65.000 0.00 0.00 0.00 3.36
2046 3168 1.742768 CTAGCACCCCACTCCGATC 59.257 63.158 0.00 0.00 0.00 3.69
2050 3172 1.198759 TTGTCCTAGCACCCCACTCC 61.199 60.000 0.00 0.00 0.00 3.85
2072 3194 2.825861 AGCCAAGCAAACATCTTTGG 57.174 45.000 0.00 0.00 37.78 3.28
2101 3223 9.981114 AAAACTAACATCTTTCCATGGTAAAAG 57.019 29.630 16.38 16.38 34.49 2.27
2148 3298 6.422100 CGTCTGGAAATGAATGTATAGTCCTG 59.578 42.308 0.00 0.00 0.00 3.86
2172 3324 2.884012 TCCACTAAAATATGCATGGCCG 59.116 45.455 10.16 0.00 0.00 6.13
2353 3640 8.750298 CAATAGTAGTCTCCTTCTTTCTACCAA 58.250 37.037 0.00 0.00 33.66 3.67
2376 3663 5.591877 GGTGAGACTAATTGCAGGAATCAAT 59.408 40.000 0.00 0.00 35.83 2.57
2496 3785 7.900782 TGTGTTATAGTAGAGAAAAACCTGC 57.099 36.000 0.00 0.00 0.00 4.85
2568 3870 6.070136 AGCTCAGCATTGATGATACCTGATAT 60.070 38.462 4.87 0.00 31.68 1.63
2618 3970 8.367911 AGTGTCTCTTCTACAATGTCAATGTAA 58.632 33.333 2.48 0.00 33.17 2.41
2713 4065 9.612620 GAGACAAACCAACAAAATAATGTCTAG 57.387 33.333 5.20 0.00 44.40 2.43
2922 4309 9.739276 TCAGTGTAATCTGGATAACTCATTTTT 57.261 29.630 0.00 0.00 36.25 1.94
2986 7599 7.750229 ATTATATGCAGAAACCATCGAATGT 57.250 32.000 0.00 0.00 0.00 2.71
3133 7746 4.825546 AAATGAGCTAGAATCCAATGCG 57.174 40.909 0.00 0.00 0.00 4.73
3167 10895 6.272318 CACACCTCAACAAATAAAGCTGAAA 58.728 36.000 0.00 0.00 0.00 2.69
3296 11024 1.345415 TGTACCTCGAAAGAACCACCC 59.655 52.381 0.00 0.00 41.32 4.61
3429 11158 5.930209 ATCACCACCCTACATGGAAATAT 57.070 39.130 0.00 0.00 39.87 1.28
3430 11159 6.833346 TTATCACCACCCTACATGGAAATA 57.167 37.500 0.00 0.00 39.87 1.40
3509 11238 6.724905 ACCAGAGGTGTATTTGAGTAGTACTT 59.275 38.462 0.00 0.00 32.98 2.24
3526 11255 7.750947 ATGGTACTAATAGAAAACCAGAGGT 57.249 36.000 15.10 0.00 43.11 3.85
3537 11274 6.183360 CCGACCTCCAAAATGGTACTAATAGA 60.183 42.308 0.00 0.00 39.03 1.98
3541 11278 3.620472 GCCGACCTCCAAAATGGTACTAA 60.620 47.826 0.00 0.00 39.03 2.24
3554 11291 1.153349 GGAGAACATGCCGACCTCC 60.153 63.158 0.00 0.00 36.94 4.30
3557 11294 1.243902 TTTTGGAGAACATGCCGACC 58.756 50.000 0.00 0.00 0.00 4.79
3742 11482 4.481368 AATGTAAGCGAACTATCACCCA 57.519 40.909 0.00 0.00 0.00 4.51
3762 11511 6.938030 ACACAACGGAATGAAACCTATCTAAA 59.062 34.615 0.00 0.00 0.00 1.85
3766 11515 6.920569 ATACACAACGGAATGAAACCTATC 57.079 37.500 0.00 0.00 0.00 2.08
3767 11516 7.696992 AAATACACAACGGAATGAAACCTAT 57.303 32.000 0.00 0.00 0.00 2.57
3781 11539 9.893305 ACAAATAGTAGCTTCAAAATACACAAC 57.107 29.630 0.00 0.00 0.00 3.32
3791 11549 7.659799 TCAGCAAGTAACAAATAGTAGCTTCAA 59.340 33.333 0.00 0.00 0.00 2.69
4125 11887 8.523658 GCTCTTTGTCCCTGTAAGAAAAATATT 58.476 33.333 0.00 0.00 34.07 1.28
4218 11980 6.911250 TGCTATTGACTCGGAATTATCCTA 57.089 37.500 0.00 0.00 44.17 2.94
4291 12057 6.998074 ACATTTTACTCAGTTGAACAGGATGA 59.002 34.615 0.00 0.00 39.69 2.92
4292 12058 7.206981 ACATTTTACTCAGTTGAACAGGATG 57.793 36.000 0.00 0.00 46.00 3.51
4293 12059 7.823745 AACATTTTACTCAGTTGAACAGGAT 57.176 32.000 0.00 0.00 0.00 3.24
4294 12060 7.444183 CCTAACATTTTACTCAGTTGAACAGGA 59.556 37.037 0.00 0.00 0.00 3.86
4295 12061 7.444183 TCCTAACATTTTACTCAGTTGAACAGG 59.556 37.037 0.00 0.00 0.00 4.00
4296 12062 8.378172 TCCTAACATTTTACTCAGTTGAACAG 57.622 34.615 0.00 0.00 0.00 3.16
4297 12063 7.041372 GCTCCTAACATTTTACTCAGTTGAACA 60.041 37.037 0.00 0.00 0.00 3.18
4298 12064 7.173390 AGCTCCTAACATTTTACTCAGTTGAAC 59.827 37.037 0.00 0.00 0.00 3.18
4299 12065 7.224297 AGCTCCTAACATTTTACTCAGTTGAA 58.776 34.615 0.00 0.00 0.00 2.69
4308 12083 2.612672 GCCCGAGCTCCTAACATTTTAC 59.387 50.000 8.47 0.00 35.50 2.01
4325 12108 1.402787 AATTTCCCTGCAATAGCCCG 58.597 50.000 0.00 0.00 41.13 6.13
4375 12178 4.823442 TGATCATCCAAGGATTTGATTCCG 59.177 41.667 0.00 0.00 40.94 4.30
4601 12489 7.581476 AGAGTACATAATTTTTCGTGTTGTGG 58.419 34.615 0.00 0.00 0.00 4.17
4638 12535 6.429385 TGCACAAAATAAAATAAAAGGCAGGG 59.571 34.615 0.00 0.00 0.00 4.45
4711 12613 6.126478 ACAGGGGGTGTATTATGGATATATGC 60.126 42.308 0.00 0.00 37.75 3.14
4976 12986 3.287312 TCAAAAGAAAGGCAGATTGCG 57.713 42.857 0.00 0.00 46.21 4.85
5046 13058 8.306761 GCAGATAAAAGAAATACATATTGGGGG 58.693 37.037 0.00 0.00 0.00 5.40
5074 13086 9.618890 TTGATCTATACTTGCTGCTCTAATTTT 57.381 29.630 0.00 0.00 0.00 1.82
5168 13239 8.463930 AGTTCTACAAGAATGTTCCATGAAAA 57.536 30.769 0.00 0.00 41.05 2.29
5215 13286 5.591067 TCACTTTTCCCGTTGACAAAGTTAT 59.409 36.000 0.43 0.00 34.74 1.89
5342 13413 3.219052 GGTCAAACCTACTCTCAGTCG 57.781 52.381 0.00 0.00 34.73 4.18
5385 13456 1.897560 AAGGTTCCGAAGCTCCAAAG 58.102 50.000 13.09 0.00 38.49 2.77
5405 13476 5.762179 AGGACCTTAGATCAAATGACACA 57.238 39.130 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.