Multiple sequence alignment - TraesCS2A01G053000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G053000 chr2A 100.000 4454 0 0 1 4454 21232157 21227704 0.000000e+00 8226.0
1 TraesCS2A01G053000 chr2A 86.979 3072 341 25 800 3849 21255111 21252077 0.000000e+00 3402.0
2 TraesCS2A01G053000 chr2A 88.728 346 24 8 801 1144 21236532 21236200 4.150000e-110 409.0
3 TraesCS2A01G053000 chr2A 82.353 153 14 4 317 461 21237510 21237363 2.180000e-23 121.0
4 TraesCS2A01G053000 chr2A 80.952 84 11 2 471 549 21256414 21256331 1.340000e-05 62.1
5 TraesCS2A01G053000 chr2D 87.818 3497 350 38 1 3473 20608856 20605412 0.000000e+00 4028.0
6 TraesCS2A01G053000 chr2D 90.584 2655 221 13 801 3455 20427410 20424785 0.000000e+00 3491.0
7 TraesCS2A01G053000 chr2D 87.045 2941 328 28 800 3725 20771058 20768156 0.000000e+00 3271.0
8 TraesCS2A01G053000 chr2D 87.107 2575 302 19 800 3361 20634371 20631814 0.000000e+00 2889.0
9 TraesCS2A01G053000 chr2D 74.037 2180 496 58 1307 3453 19909884 19907742 0.000000e+00 826.0
10 TraesCS2A01G053000 chr2D 79.905 423 63 17 3216 3625 20615959 20615546 1.570000e-74 291.0
11 TraesCS2A01G053000 chr2D 89.677 155 10 5 317 468 20635354 20635203 4.550000e-45 193.0
12 TraesCS2A01G053000 chr2D 84.444 90 8 4 376 459 20771762 20771673 2.850000e-12 84.2
13 TraesCS2A01G053000 chr2D 80.374 107 13 4 364 468 20772762 20772662 1.720000e-09 75.0
14 TraesCS2A01G053000 chr2D 97.222 36 1 0 563 598 20427694 20427659 1.340000e-05 62.1
15 TraesCS2A01G053000 chr2D 94.872 39 2 0 430 468 20431819 20431781 1.340000e-05 62.1
16 TraesCS2A01G053000 chr2D 100.000 30 0 0 3920 3949 20767616 20767587 6.220000e-04 56.5
17 TraesCS2A01G053000 chr2B 86.110 3067 373 26 800 3848 33842179 33839148 0.000000e+00 3254.0
18 TraesCS2A01G053000 chr2B 83.607 305 34 5 3144 3446 33734594 33734304 5.680000e-69 272.0
19 TraesCS2A01G053000 chr2B 88.261 230 12 5 4236 4453 33838396 33838170 1.230000e-65 261.0
20 TraesCS2A01G053000 chr2B 88.506 87 7 2 376 459 33842853 33842767 7.880000e-18 102.0
21 TraesCS2A01G053000 chr2B 94.444 54 3 0 4149 4202 33838518 33838465 2.850000e-12 84.2
22 TraesCS2A01G053000 chrUn 78.683 1154 223 19 2310 3453 16541043 16539903 0.000000e+00 747.0
23 TraesCS2A01G053000 chrUn 80.286 908 173 6 2549 3453 451986173 451985269 0.000000e+00 680.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G053000 chr2A 21227704 21232157 4453 True 8226.000 8226 100.00000 1 4454 1 chr2A.!!$R1 4453
1 TraesCS2A01G053000 chr2A 21252077 21256414 4337 True 1732.050 3402 83.96550 471 3849 2 chr2A.!!$R3 3378
2 TraesCS2A01G053000 chr2A 21236200 21237510 1310 True 265.000 409 85.54050 317 1144 2 chr2A.!!$R2 827
3 TraesCS2A01G053000 chr2D 20605412 20608856 3444 True 4028.000 4028 87.81800 1 3473 1 chr2D.!!$R3 3472
4 TraesCS2A01G053000 chr2D 20424785 20427694 2909 True 1776.550 3491 93.90300 563 3455 2 chr2D.!!$R5 2892
5 TraesCS2A01G053000 chr2D 20631814 20635354 3540 True 1541.000 2889 88.39200 317 3361 2 chr2D.!!$R6 3044
6 TraesCS2A01G053000 chr2D 20767587 20772762 5175 True 871.675 3271 87.96575 364 3949 4 chr2D.!!$R7 3585
7 TraesCS2A01G053000 chr2D 19907742 19909884 2142 True 826.000 826 74.03700 1307 3453 1 chr2D.!!$R1 2146
8 TraesCS2A01G053000 chr2B 33838170 33842853 4683 True 925.300 3254 89.33025 376 4453 4 chr2B.!!$R2 4077
9 TraesCS2A01G053000 chrUn 16539903 16541043 1140 True 747.000 747 78.68300 2310 3453 1 chrUn.!!$R1 1143
10 TraesCS2A01G053000 chrUn 451985269 451986173 904 True 680.000 680 80.28600 2549 3453 1 chrUn.!!$R2 904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
798 2733 0.169672 CAGCAGCAACCTCAATTCGG 59.830 55.0 0.0 0.0 0.0 4.30 F
1755 3737 0.034089 ATGTTACTTCAGCAGGGGGC 60.034 55.0 0.0 0.0 45.3 5.80 F
1815 3797 0.518636 CAGATGGTGTGTTTCGGCAG 59.481 55.0 0.0 0.0 0.0 4.85 F
2835 4829 0.465097 CCAAGGGCTCGCTCAATGAT 60.465 55.0 0.0 0.0 0.0 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 3866 0.250234 TTTCGCAGATGTCCTCAGGG 59.750 55.0 0.0 0.0 35.04 4.45 R
2770 4764 0.396435 TGAGTTCCCTCGTTGCACAT 59.604 50.0 0.0 0.0 40.85 3.21 R
3256 5251 0.550914 TCACCCTCCACAAGCAAGTT 59.449 50.0 0.0 0.0 0.00 2.66 R
3862 5908 0.105709 GAAGGAGGAGGAGGAGGAGG 60.106 65.0 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.705110 TTCCTTGAGACAAATCCACAGA 57.295 40.909 0.00 0.00 0.00 3.41
38 39 4.705110 TCCTTGAGACAAATCCACAGAA 57.295 40.909 0.00 0.00 0.00 3.02
266 267 3.247006 TCTCTTTCCGTAGCCATGTTC 57.753 47.619 0.00 0.00 0.00 3.18
276 277 5.123186 TCCGTAGCCATGTTCAAAAATACTG 59.877 40.000 0.00 0.00 0.00 2.74
312 313 8.076178 GCGCATATAATTTCTAAATTGAGTGGT 58.924 33.333 0.30 0.00 38.90 4.16
313 314 9.599322 CGCATATAATTTCTAAATTGAGTGGTC 57.401 33.333 10.26 0.00 38.90 4.02
314 315 9.599322 GCATATAATTTCTAAATTGAGTGGTCG 57.401 33.333 10.26 0.00 38.90 4.79
345 346 2.285977 CCCTTACCGTAGCCATGTTTC 58.714 52.381 0.00 0.00 0.00 2.78
346 347 2.093128 CCCTTACCGTAGCCATGTTTCT 60.093 50.000 0.00 0.00 0.00 2.52
347 348 3.195661 CCTTACCGTAGCCATGTTTCTC 58.804 50.000 0.00 0.00 0.00 2.87
419 428 5.825532 TCCAATATTCCAGTCAACCAATGA 58.174 37.500 0.00 0.00 35.05 2.57
465 475 0.240945 CGGAAACACCAATGGAGTGC 59.759 55.000 6.16 0.06 38.87 4.40
468 478 2.288395 GGAAACACCAATGGAGTGCAAG 60.288 50.000 6.16 0.00 38.87 4.01
470 480 0.467844 ACACCAATGGAGTGCAAGCA 60.468 50.000 6.16 0.00 38.87 3.91
630 2351 9.319143 CAGACTTCTGTATTAAGGGACAAATAG 57.681 37.037 0.00 0.00 39.09 1.73
748 2492 6.597832 AGAAAGTCAGAACACTAGCAGTAT 57.402 37.500 0.00 0.00 0.00 2.12
750 2494 8.299990 AGAAAGTCAGAACACTAGCAGTATAT 57.700 34.615 0.00 0.00 0.00 0.86
751 2495 8.754080 AGAAAGTCAGAACACTAGCAGTATATT 58.246 33.333 0.00 0.00 0.00 1.28
752 2496 8.934507 AAAGTCAGAACACTAGCAGTATATTC 57.065 34.615 0.00 0.00 0.00 1.75
753 2497 7.045126 AGTCAGAACACTAGCAGTATATTCC 57.955 40.000 0.00 0.00 0.00 3.01
762 2687 7.769044 ACACTAGCAGTATATTCCGAAAAACAT 59.231 33.333 0.00 0.00 0.00 2.71
779 2704 3.460857 ACATAACACTAGCCTAGCAGC 57.539 47.619 0.00 0.00 0.00 5.25
783 2708 1.260538 ACACTAGCCTAGCAGCAGCA 61.261 55.000 3.17 0.00 45.49 4.41
791 2716 1.367599 CTAGCAGCAGCAGCAACCTC 61.368 60.000 12.92 0.00 45.49 3.85
792 2717 2.115734 TAGCAGCAGCAGCAACCTCA 62.116 55.000 12.92 0.00 45.49 3.86
793 2718 2.558286 GCAGCAGCAGCAACCTCAA 61.558 57.895 4.63 0.00 45.49 3.02
794 2719 1.874345 GCAGCAGCAGCAACCTCAAT 61.874 55.000 4.63 0.00 45.49 2.57
798 2733 0.169672 CAGCAGCAACCTCAATTCGG 59.830 55.000 0.00 0.00 0.00 4.30
903 2877 3.202906 CCAACTGTTCCACGAAGAAGAA 58.797 45.455 0.00 0.00 0.00 2.52
906 2880 1.801178 CTGTTCCACGAAGAAGAAGCC 59.199 52.381 0.00 0.00 0.00 4.35
907 2881 0.790814 GTTCCACGAAGAAGAAGCCG 59.209 55.000 0.00 0.00 0.00 5.52
908 2882 0.949105 TTCCACGAAGAAGAAGCCGC 60.949 55.000 0.00 0.00 0.00 6.53
909 2883 1.667830 CCACGAAGAAGAAGCCGCA 60.668 57.895 0.00 0.00 0.00 5.69
914 2888 3.802139 CACGAAGAAGAAGCCGCATAATA 59.198 43.478 0.00 0.00 0.00 0.98
1047 3026 3.578716 TGCTCCAGTTCTTGCTACTACTT 59.421 43.478 0.00 0.00 0.00 2.24
1407 3386 1.509787 CGCCAAAATGCTCGACACG 60.510 57.895 0.00 0.00 0.00 4.49
1428 3407 0.166814 GTGACTTCATGCTTGTCGGC 59.833 55.000 0.00 0.00 33.81 5.54
1487 3466 0.403271 GCTGATACCATCCTGCCCAT 59.597 55.000 0.00 0.00 0.00 4.00
1509 3488 3.936203 GTGCTCCGTGTGGGTCCA 61.936 66.667 0.00 0.00 37.00 4.02
1545 3527 1.344438 AGAAGCCGTCTCATCAACACA 59.656 47.619 0.00 0.00 0.00 3.72
1557 3539 4.883083 TCATCAACACAGACTACTCCAAC 58.117 43.478 0.00 0.00 0.00 3.77
1600 3582 4.168760 GCAAACTGATGGTAATCTTGTGC 58.831 43.478 0.00 0.00 33.61 4.57
1632 3614 1.198637 GCTGAGCATTCCACACTTGAC 59.801 52.381 0.00 0.00 0.00 3.18
1655 3637 1.416401 CGGTCCATACTGGGCAACTAT 59.584 52.381 0.00 0.00 45.98 2.12
1663 3645 5.396324 CCATACTGGGCAACTATGACAGTTA 60.396 44.000 10.40 1.55 40.90 2.24
1724 3706 8.960591 CAGGATATACTTCACCTTGAAAAATGT 58.039 33.333 0.00 0.00 35.73 2.71
1738 3720 7.115805 CCTTGAAAAATGTGACACAGATCAATG 59.884 37.037 14.66 12.95 0.00 2.82
1740 3722 7.490840 TGAAAAATGTGACACAGATCAATGTT 58.509 30.769 14.66 0.00 0.00 2.71
1755 3737 0.034089 ATGTTACTTCAGCAGGGGGC 60.034 55.000 0.00 0.00 45.30 5.80
1806 3788 1.012086 CGCTTGATCCAGATGGTGTG 58.988 55.000 0.00 0.00 36.34 3.82
1815 3797 0.518636 CAGATGGTGTGTTTCGGCAG 59.481 55.000 0.00 0.00 0.00 4.85
1849 3831 1.003003 AGAGCAGAAAGGCCAGAAGTC 59.997 52.381 5.01 0.00 0.00 3.01
1887 3869 2.586792 GCGGTGAGCTCAATCCCT 59.413 61.111 20.19 0.00 44.04 4.20
1900 3882 3.621225 TCCCTGAGGACATCTGCG 58.379 61.111 0.00 0.00 37.19 5.18
1902 3884 0.614697 TCCCTGAGGACATCTGCGAA 60.615 55.000 0.00 0.00 37.19 4.70
1988 3976 2.434428 CAAGAATCAGACAAGCTGCCT 58.566 47.619 0.00 0.00 44.52 4.75
1995 3983 1.225704 GACAAGCTGCCTATGCCCT 59.774 57.895 0.00 0.00 36.33 5.19
2026 4014 2.383855 AGTTCTTCGATGAGGAGAGGG 58.616 52.381 0.94 0.00 0.00 4.30
2080 4068 4.780815 ACAAAGTTGTGACCTTGATGAGA 58.219 39.130 0.00 0.00 40.49 3.27
2081 4069 5.380043 ACAAAGTTGTGACCTTGATGAGAT 58.620 37.500 0.00 0.00 40.49 2.75
2134 4122 1.478916 TCGATCGTGTTGATTGGCCTA 59.521 47.619 15.94 0.00 38.78 3.93
2136 4124 2.030457 CGATCGTGTTGATTGGCCTAAC 59.970 50.000 7.03 5.08 37.47 2.34
2138 4126 2.422597 TCGTGTTGATTGGCCTAACTG 58.577 47.619 3.32 2.46 0.00 3.16
2172 4163 2.125326 CCGCCCCATAGACGAGACA 61.125 63.158 0.00 0.00 0.00 3.41
2212 4203 1.469703 TGATTGATTGCTTCTGTGCCG 59.530 47.619 0.00 0.00 0.00 5.69
2227 4218 3.093278 CCGCAGCGGTCTTTGATC 58.907 61.111 26.69 0.00 42.73 2.92
2231 4222 0.881118 GCAGCGGTCTTTGATCCAAA 59.119 50.000 0.00 0.00 0.00 3.28
2238 4229 4.677584 CGGTCTTTGATCCAAACACAAAA 58.322 39.130 0.00 0.00 34.03 2.44
2274 4265 6.725834 AGAAAAAGCTCCCTTTATCAAATGGA 59.274 34.615 0.00 0.00 40.30 3.41
2283 4274 6.843333 TCCCTTTATCAAATGGAAATATGGCA 59.157 34.615 0.00 0.00 33.09 4.92
2284 4275 6.930722 CCCTTTATCAAATGGAAATATGGCAC 59.069 38.462 0.00 0.00 32.78 5.01
2478 4472 3.332485 TCTTTGGCACTTACTGGGGTATT 59.668 43.478 0.00 0.00 0.00 1.89
2490 4484 2.509548 CTGGGGTATTTCCATCACCTCA 59.490 50.000 0.00 0.00 40.56 3.86
2544 4538 5.194942 AGGTAGTTCTATATTGCCCCCAAAA 59.805 40.000 0.00 0.00 34.05 2.44
2545 4539 5.301045 GGTAGTTCTATATTGCCCCCAAAAC 59.699 44.000 0.00 0.00 34.05 2.43
2558 4552 4.739436 GCCCCCAAAACTTTTCACTTACAG 60.739 45.833 0.00 0.00 0.00 2.74
2632 4626 4.039973 CCTCTGGTACTGTGTACAAAGGAA 59.960 45.833 17.46 2.25 0.00 3.36
2769 4763 2.598394 TTGGTCAGGCTGCTTGGC 60.598 61.111 10.34 10.07 42.15 4.52
2770 4764 3.433984 TTGGTCAGGCTGCTTGGCA 62.434 57.895 18.18 1.80 44.55 4.92
2778 4772 2.025418 GCTGCTTGGCATGTGCAAC 61.025 57.895 7.36 4.19 44.36 4.17
2788 4782 3.126729 GCATGTGCAACGAGGGAACTC 62.127 57.143 0.00 0.00 47.00 3.01
2835 4829 0.465097 CCAAGGGCTCGCTCAATGAT 60.465 55.000 0.00 0.00 0.00 2.45
2907 4901 4.021925 GGAGTGGCACGAGGGCTT 62.022 66.667 12.71 0.00 43.83 4.35
2934 4929 1.134075 GCATGAAGAGTGCAGCACG 59.866 57.895 19.96 4.97 42.08 5.34
3018 5013 1.778017 TAGCAGACTTTGGCCTGGCA 61.778 55.000 22.05 1.21 0.00 4.92
3256 5251 1.906574 GTTACAGGTGTGGGAGGATCA 59.093 52.381 0.00 0.00 36.25 2.92
3455 5450 4.436242 TCATCAGTTCACTTCCGTAGTC 57.564 45.455 0.00 0.00 33.85 2.59
3457 5453 1.538512 TCAGTTCACTTCCGTAGTCCG 59.461 52.381 0.00 0.00 33.85 4.79
3473 5473 4.223320 AGTCCGTGCTTGTTAACAAATG 57.777 40.909 20.89 12.63 35.15 2.32
3528 5528 7.830739 ACATGGATAATCTGAAACTGTTTTCC 58.169 34.615 7.28 8.78 40.55 3.13
3541 5541 4.936891 ACTGTTTTCCATTGAAGCTTCAC 58.063 39.130 28.46 14.64 36.83 3.18
3543 5543 4.935702 TGTTTTCCATTGAAGCTTCACAG 58.064 39.130 28.46 21.66 36.83 3.66
3619 5626 7.704271 CATCACTGATGCATCTGTATCTTTTT 58.296 34.615 31.19 10.27 37.90 1.94
3681 5689 7.155328 AGCAGCCGTATATCTATTTATATGCC 58.845 38.462 0.00 0.00 0.00 4.40
3702 5710 7.921786 TGCCTATTTATATCTTTGAATCCGG 57.078 36.000 0.00 0.00 0.00 5.14
3703 5711 6.884295 TGCCTATTTATATCTTTGAATCCGGG 59.116 38.462 0.00 0.00 0.00 5.73
3729 5737 7.945033 TTTTTCAAACATTCTCTACAATGCC 57.055 32.000 0.00 0.00 37.28 4.40
3730 5738 6.899393 TTTCAAACATTCTCTACAATGCCT 57.101 33.333 0.00 0.00 37.28 4.75
3731 5739 6.500684 TTCAAACATTCTCTACAATGCCTC 57.499 37.500 0.00 0.00 37.28 4.70
3732 5740 4.631377 TCAAACATTCTCTACAATGCCTCG 59.369 41.667 0.00 0.00 37.28 4.63
3733 5741 3.895232 ACATTCTCTACAATGCCTCGT 57.105 42.857 0.00 0.00 37.28 4.18
3734 5742 5.339008 AACATTCTCTACAATGCCTCGTA 57.661 39.130 0.00 0.00 37.28 3.43
3735 5743 5.339008 ACATTCTCTACAATGCCTCGTAA 57.661 39.130 0.00 0.00 37.28 3.18
3736 5744 5.730550 ACATTCTCTACAATGCCTCGTAAA 58.269 37.500 0.00 0.00 37.28 2.01
3737 5745 5.581085 ACATTCTCTACAATGCCTCGTAAAC 59.419 40.000 0.00 0.00 37.28 2.01
3738 5746 4.794278 TCTCTACAATGCCTCGTAAACA 57.206 40.909 0.00 0.00 0.00 2.83
3739 5747 5.142061 TCTCTACAATGCCTCGTAAACAA 57.858 39.130 0.00 0.00 0.00 2.83
3740 5748 5.543714 TCTCTACAATGCCTCGTAAACAAA 58.456 37.500 0.00 0.00 0.00 2.83
3741 5749 5.992829 TCTCTACAATGCCTCGTAAACAAAA 59.007 36.000 0.00 0.00 0.00 2.44
3742 5750 6.483974 TCTCTACAATGCCTCGTAAACAAAAA 59.516 34.615 0.00 0.00 0.00 1.94
3743 5751 6.664515 TCTACAATGCCTCGTAAACAAAAAG 58.335 36.000 0.00 0.00 0.00 2.27
3744 5752 5.508200 ACAATGCCTCGTAAACAAAAAGA 57.492 34.783 0.00 0.00 0.00 2.52
3745 5753 5.897050 ACAATGCCTCGTAAACAAAAAGAA 58.103 33.333 0.00 0.00 0.00 2.52
3746 5754 6.334202 ACAATGCCTCGTAAACAAAAAGAAA 58.666 32.000 0.00 0.00 0.00 2.52
3780 5826 5.481122 AGACTAGAAAAAGGGTAGAGGTGAC 59.519 44.000 0.00 0.00 0.00 3.67
3783 5829 7.190501 ACTAGAAAAAGGGTAGAGGTGACTAT 58.809 38.462 0.00 0.00 44.43 2.12
3834 5880 3.197983 AGTTTCCTACAGCTACATGGTCC 59.802 47.826 0.00 0.00 0.00 4.46
3859 5905 0.398381 ACTGGCATCTCCTCCTCCTC 60.398 60.000 0.00 0.00 35.26 3.71
3861 5907 1.235696 GGCATCTCCTCCTCCTCCT 59.764 63.158 0.00 0.00 0.00 3.69
3862 5908 0.831711 GGCATCTCCTCCTCCTCCTC 60.832 65.000 0.00 0.00 0.00 3.71
3863 5909 0.831711 GCATCTCCTCCTCCTCCTCC 60.832 65.000 0.00 0.00 0.00 4.30
3864 5910 0.859760 CATCTCCTCCTCCTCCTCCT 59.140 60.000 0.00 0.00 0.00 3.69
3865 5911 1.158007 ATCTCCTCCTCCTCCTCCTC 58.842 60.000 0.00 0.00 0.00 3.71
3868 5914 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
3870 5916 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
3871 5917 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
3872 5918 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
3873 5919 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
3874 5920 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
3875 5921 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
3876 5922 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
3878 5924 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
3880 5926 0.556380 TCCTCCTCCTCCTCCTCCTT 60.556 60.000 0.00 0.00 0.00 3.36
3881 5927 0.105709 CCTCCTCCTCCTCCTCCTTC 60.106 65.000 0.00 0.00 0.00 3.46
3882 5928 0.933700 CTCCTCCTCCTCCTCCTTCT 59.066 60.000 0.00 0.00 0.00 2.85
3883 5929 1.290732 CTCCTCCTCCTCCTCCTTCTT 59.709 57.143 0.00 0.00 0.00 2.52
3884 5930 1.289530 TCCTCCTCCTCCTCCTTCTTC 59.710 57.143 0.00 0.00 0.00 2.87
3885 5931 1.290732 CCTCCTCCTCCTCCTTCTTCT 59.709 57.143 0.00 0.00 0.00 2.85
3887 5933 3.031013 CTCCTCCTCCTCCTTCTTCTTC 58.969 54.545 0.00 0.00 0.00 2.87
3893 6304 6.493458 CCTCCTCCTCCTTCTTCTTCTATTAG 59.507 46.154 0.00 0.00 0.00 1.73
3904 6315 7.939784 TCTTCTTCTATTAGTCTGCACTGTA 57.060 36.000 0.00 0.00 33.62 2.74
3905 6316 8.526667 TCTTCTTCTATTAGTCTGCACTGTAT 57.473 34.615 0.00 0.00 33.62 2.29
3906 6317 8.972127 TCTTCTTCTATTAGTCTGCACTGTATT 58.028 33.333 0.00 0.00 33.62 1.89
3910 6321 9.457110 CTTCTATTAGTCTGCACTGTATTACTG 57.543 37.037 0.00 0.00 33.62 2.74
3911 6322 7.941919 TCTATTAGTCTGCACTGTATTACTGG 58.058 38.462 5.80 0.00 33.62 4.00
3949 6389 7.582667 TGCAGACAGTAATTAGCTACAGATA 57.417 36.000 0.00 0.00 0.00 1.98
3950 6390 8.007405 TGCAGACAGTAATTAGCTACAGATAA 57.993 34.615 0.00 0.00 0.00 1.75
3951 6391 8.642432 TGCAGACAGTAATTAGCTACAGATAAT 58.358 33.333 0.00 0.00 38.14 1.28
3952 6392 9.482627 GCAGACAGTAATTAGCTACAGATAATT 57.517 33.333 14.78 14.78 45.24 1.40
3966 6406 9.640963 GCTACAGATAATTACTGGTATTACTGG 57.359 37.037 15.13 0.00 39.38 4.00
3969 6409 9.209048 ACAGATAATTACTGGTATTACTGGACA 57.791 33.333 15.13 0.00 39.38 4.02
3970 6410 9.698309 CAGATAATTACTGGTATTACTGGACAG 57.302 37.037 0.00 0.00 35.40 3.51
3971 6411 9.435570 AGATAATTACTGGTATTACTGGACAGT 57.564 33.333 10.15 10.15 43.95 3.55
3972 6412 9.477484 GATAATTACTGGTATTACTGGACAGTG 57.523 37.037 14.86 0.00 41.93 3.66
3973 6413 6.869206 ATTACTGGTATTACTGGACAGTGT 57.131 37.500 14.86 0.00 41.93 3.55
3974 6414 6.675413 TTACTGGTATTACTGGACAGTGTT 57.325 37.500 14.86 4.97 41.93 3.32
3976 6416 6.282199 ACTGGTATTACTGGACAGTGTTAG 57.718 41.667 14.86 1.93 42.52 2.34
3977 6417 5.778750 ACTGGTATTACTGGACAGTGTTAGT 59.221 40.000 14.86 15.61 42.52 2.24
3978 6418 6.032956 TGGTATTACTGGACAGTGTTAGTG 57.967 41.667 18.89 5.13 42.52 2.74
3979 6419 5.046878 TGGTATTACTGGACAGTGTTAGTGG 60.047 44.000 18.89 3.69 42.52 4.00
3980 6420 4.553330 ATTACTGGACAGTGTTAGTGGG 57.447 45.455 18.89 2.55 42.52 4.61
3981 6421 1.056660 ACTGGACAGTGTTAGTGGGG 58.943 55.000 11.86 0.00 40.75 4.96
3984 6424 2.305927 CTGGACAGTGTTAGTGGGGAAT 59.694 50.000 0.00 0.00 0.00 3.01
3985 6425 2.714250 TGGACAGTGTTAGTGGGGAATT 59.286 45.455 0.00 0.00 0.00 2.17
3986 6426 3.911260 TGGACAGTGTTAGTGGGGAATTA 59.089 43.478 0.00 0.00 0.00 1.40
3987 6427 4.019681 TGGACAGTGTTAGTGGGGAATTAG 60.020 45.833 0.00 0.00 0.00 1.73
3988 6428 4.019591 GGACAGTGTTAGTGGGGAATTAGT 60.020 45.833 0.00 0.00 0.00 2.24
3989 6429 4.906618 ACAGTGTTAGTGGGGAATTAGTG 58.093 43.478 0.00 0.00 0.00 2.74
3990 6430 4.595781 ACAGTGTTAGTGGGGAATTAGTGA 59.404 41.667 0.00 0.00 0.00 3.41
3991 6431 5.178797 CAGTGTTAGTGGGGAATTAGTGAG 58.821 45.833 0.00 0.00 0.00 3.51
3992 6432 5.046591 CAGTGTTAGTGGGGAATTAGTGAGA 60.047 44.000 0.00 0.00 0.00 3.27
3993 6433 5.546499 AGTGTTAGTGGGGAATTAGTGAGAA 59.454 40.000 0.00 0.00 0.00 2.87
3995 6435 7.402071 AGTGTTAGTGGGGAATTAGTGAGAATA 59.598 37.037 0.00 0.00 0.00 1.75
3997 6437 7.402071 TGTTAGTGGGGAATTAGTGAGAATACT 59.598 37.037 0.00 0.00 34.71 2.12
3998 6438 6.487299 AGTGGGGAATTAGTGAGAATACTC 57.513 41.667 0.00 0.00 42.88 2.59
3999 6439 6.206042 AGTGGGGAATTAGTGAGAATACTCT 58.794 40.000 0.00 0.00 42.99 3.24
4001 6441 6.987404 GTGGGGAATTAGTGAGAATACTCTTC 59.013 42.308 0.00 0.00 42.99 2.87
4003 6443 6.987404 GGGGAATTAGTGAGAATACTCTTCAC 59.013 42.308 0.00 0.00 42.99 3.18
4006 6446 8.254508 GGAATTAGTGAGAATACTCTTCACTGT 58.745 37.037 14.65 3.16 42.99 3.55
4009 6449 6.656632 AGTGAGAATACTCTTCACTGTCAA 57.343 37.500 5.64 0.00 42.99 3.18
4010 6450 6.686630 AGTGAGAATACTCTTCACTGTCAAG 58.313 40.000 5.64 0.00 42.99 3.02
4011 6451 5.347364 GTGAGAATACTCTTCACTGTCAAGC 59.653 44.000 0.00 0.00 42.99 4.01
4013 6453 5.576384 GAGAATACTCTTCACTGTCAAGCAG 59.424 44.000 0.00 0.00 43.57 4.24
4023 6463 3.340814 CTGTCAAGCAGTGGGAGTATT 57.659 47.619 0.00 0.00 40.27 1.89
4026 6466 4.469657 TGTCAAGCAGTGGGAGTATTTTT 58.530 39.130 0.00 0.00 0.00 1.94
4051 6491 6.894339 AAGGGTAATTGAAACAGTACTTGG 57.106 37.500 0.00 0.00 0.00 3.61
4052 6492 4.765339 AGGGTAATTGAAACAGTACTTGGC 59.235 41.667 0.00 0.00 0.00 4.52
4053 6493 4.765339 GGGTAATTGAAACAGTACTTGGCT 59.235 41.667 0.00 0.00 0.00 4.75
4054 6494 5.941647 GGGTAATTGAAACAGTACTTGGCTA 59.058 40.000 0.00 0.00 0.00 3.93
4055 6495 6.128090 GGGTAATTGAAACAGTACTTGGCTAC 60.128 42.308 0.00 0.00 0.00 3.58
4056 6496 6.428771 GGTAATTGAAACAGTACTTGGCTACA 59.571 38.462 0.00 0.00 0.00 2.74
4057 6497 6.952773 AATTGAAACAGTACTTGGCTACAA 57.047 33.333 0.00 0.00 34.87 2.41
4058 6498 5.744666 TTGAAACAGTACTTGGCTACAAC 57.255 39.130 0.00 0.00 32.14 3.32
4059 6499 3.805422 TGAAACAGTACTTGGCTACAACG 59.195 43.478 0.00 0.00 32.14 4.10
4060 6500 2.450609 ACAGTACTTGGCTACAACGG 57.549 50.000 0.00 0.00 32.14 4.44
4061 6501 1.076332 CAGTACTTGGCTACAACGGC 58.924 55.000 0.00 0.00 32.14 5.68
4062 6502 0.682852 AGTACTTGGCTACAACGGCA 59.317 50.000 0.00 0.00 37.72 5.69
4063 6503 1.278127 AGTACTTGGCTACAACGGCAT 59.722 47.619 0.00 0.00 39.34 4.40
4064 6504 2.498481 AGTACTTGGCTACAACGGCATA 59.502 45.455 0.00 0.00 39.34 3.14
4065 6505 2.024176 ACTTGGCTACAACGGCATAG 57.976 50.000 0.00 0.00 39.34 2.23
4066 6506 1.278127 ACTTGGCTACAACGGCATAGT 59.722 47.619 0.00 0.00 39.34 2.12
4067 6507 2.498481 ACTTGGCTACAACGGCATAGTA 59.502 45.455 0.00 0.00 39.34 1.82
4068 6508 2.589798 TGGCTACAACGGCATAGTAC 57.410 50.000 0.00 0.00 34.24 2.73
4069 6509 2.104967 TGGCTACAACGGCATAGTACT 58.895 47.619 0.00 0.00 34.24 2.73
4070 6510 2.498481 TGGCTACAACGGCATAGTACTT 59.502 45.455 0.00 0.00 34.24 2.24
4071 6511 3.121544 GGCTACAACGGCATAGTACTTC 58.878 50.000 0.00 0.00 0.00 3.01
4072 6512 3.121544 GCTACAACGGCATAGTACTTCC 58.878 50.000 0.00 0.00 0.00 3.46
4073 6513 3.429822 GCTACAACGGCATAGTACTTCCA 60.430 47.826 0.00 0.00 0.00 3.53
4074 6514 2.968675 ACAACGGCATAGTACTTCCAC 58.031 47.619 0.00 0.00 0.00 4.02
4075 6515 2.277084 CAACGGCATAGTACTTCCACC 58.723 52.381 0.00 0.00 0.00 4.61
4076 6516 0.828677 ACGGCATAGTACTTCCACCC 59.171 55.000 0.00 0.00 0.00 4.61
4093 6533 2.554032 CACCCACTCACTGAATTTCACC 59.446 50.000 0.00 0.00 0.00 4.02
4100 6540 7.432869 CCACTCACTGAATTTCACCAAAATTA 58.567 34.615 0.00 0.00 45.47 1.40
4101 6541 7.382218 CCACTCACTGAATTTCACCAAAATTAC 59.618 37.037 0.00 0.00 45.47 1.89
4106 6547 4.589374 TGAATTTCACCAAAATTACGGGGT 59.411 37.500 0.00 0.00 45.47 4.95
4107 6548 5.773680 TGAATTTCACCAAAATTACGGGGTA 59.226 36.000 0.00 0.00 45.47 3.69
4112 6553 6.667558 TCACCAAAATTACGGGGTAAAAAT 57.332 33.333 0.00 0.00 31.56 1.82
4113 6554 6.689554 TCACCAAAATTACGGGGTAAAAATC 58.310 36.000 0.00 0.00 31.56 2.17
4114 6555 5.870433 CACCAAAATTACGGGGTAAAAATCC 59.130 40.000 0.00 0.00 31.56 3.01
4133 6574 2.696759 CCCCAACGCCCAAATCGAC 61.697 63.158 0.00 0.00 0.00 4.20
4134 6575 2.478746 CCAACGCCCAAATCGACG 59.521 61.111 0.00 0.00 0.00 5.12
4135 6576 2.478746 CAACGCCCAAATCGACGG 59.521 61.111 0.00 0.00 0.00 4.79
4136 6577 2.744709 AACGCCCAAATCGACGGG 60.745 61.111 11.29 11.29 46.15 5.28
4137 6578 3.540367 AACGCCCAAATCGACGGGT 62.540 57.895 15.78 1.28 45.07 5.28
4138 6579 2.744709 CGCCCAAATCGACGGGTT 60.745 61.111 15.78 0.00 45.07 4.11
4139 6580 2.746803 CGCCCAAATCGACGGGTTC 61.747 63.158 15.78 2.20 45.07 3.62
4140 6581 2.404186 GCCCAAATCGACGGGTTCC 61.404 63.158 15.78 0.00 45.07 3.62
4141 6582 1.747745 CCCAAATCGACGGGTTCCC 60.748 63.158 8.02 0.00 37.70 3.97
4142 6583 1.747745 CCAAATCGACGGGTTCCCC 60.748 63.158 1.93 0.00 41.09 4.81
4143 6584 1.003112 CAAATCGACGGGTTCCCCA 60.003 57.895 1.93 0.00 45.83 4.96
4144 6585 0.393808 CAAATCGACGGGTTCCCCAT 60.394 55.000 1.93 0.00 45.83 4.00
4145 6586 0.393808 AAATCGACGGGTTCCCCATG 60.394 55.000 1.93 0.00 45.83 3.66
4146 6587 1.268992 AATCGACGGGTTCCCCATGA 61.269 55.000 1.93 0.00 45.83 3.07
4147 6588 1.268992 ATCGACGGGTTCCCCATGAA 61.269 55.000 1.93 0.00 45.83 2.57
4148 6589 1.003112 CGACGGGTTCCCCATGAAA 60.003 57.895 1.93 0.00 45.83 2.69
4191 6632 0.035630 AGCTGCTTCGCCTCTGATTT 60.036 50.000 0.00 0.00 0.00 2.17
4195 6636 0.735471 GCTTCGCCTCTGATTTTCCC 59.265 55.000 0.00 0.00 0.00 3.97
4198 6639 1.745115 CGCCTCTGATTTTCCCGCA 60.745 57.895 0.00 0.00 0.00 5.69
4199 6640 1.803289 GCCTCTGATTTTCCCGCAC 59.197 57.895 0.00 0.00 0.00 5.34
4200 6641 1.982073 GCCTCTGATTTTCCCGCACG 61.982 60.000 0.00 0.00 0.00 5.34
4201 6642 1.425428 CTCTGATTTTCCCGCACGC 59.575 57.895 0.00 0.00 0.00 5.34
4202 6643 2.098298 CTGATTTTCCCGCACGCG 59.902 61.111 3.53 3.53 39.44 6.01
4203 6644 2.666862 TGATTTTCCCGCACGCGT 60.667 55.556 5.58 5.58 37.81 6.01
4204 6645 2.202298 GATTTTCCCGCACGCGTG 60.202 61.111 34.01 34.01 37.81 5.34
4205 6646 3.661025 GATTTTCCCGCACGCGTGG 62.661 63.158 37.47 26.73 42.94 4.94
4228 6669 1.872952 CATCCACAAAGCACTCGACAA 59.127 47.619 0.00 0.00 0.00 3.18
4234 6675 1.092921 AAAGCACTCGACAAACGGCA 61.093 50.000 0.00 0.00 42.82 5.69
4249 6743 4.362476 GCAAAGCGGCAGGGTTGG 62.362 66.667 1.45 0.00 36.26 3.77
4251 6745 3.897122 AAAGCGGCAGGGTTGGGA 61.897 61.111 1.45 0.00 36.26 4.37
4258 6752 1.146263 GCAGGGTTGGGATCCTACG 59.854 63.158 12.58 0.00 30.33 3.51
4372 6874 0.106167 GGGGGTGGGATTTCTAAGCC 60.106 60.000 0.00 0.00 35.82 4.35
4373 6875 0.465642 GGGGTGGGATTTCTAAGCCG 60.466 60.000 0.00 0.00 38.00 5.52
4374 6876 0.544697 GGGTGGGATTTCTAAGCCGA 59.455 55.000 0.00 0.00 38.00 5.54
4377 6879 2.093128 GGTGGGATTTCTAAGCCGAGAA 60.093 50.000 0.00 0.00 38.00 2.87
4391 6893 2.494059 CCGAGAAGAGTCCAAAGCAAA 58.506 47.619 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.657504 TGGCTATGAGTGAGAGAATCCATT 59.342 41.667 0.00 0.00 33.66 3.16
38 39 4.229639 TGGCTATGAGTGAGAGAATCCAT 58.770 43.478 0.00 0.00 33.66 3.41
44 45 3.117360 TCTGGATGGCTATGAGTGAGAGA 60.117 47.826 0.00 0.00 0.00 3.10
169 170 8.664211 TTTGGGCAACGATTTAATTTTAAGTT 57.336 26.923 0.00 0.00 37.60 2.66
221 222 0.746923 GGTATCCCAAGGTTCGTGCC 60.747 60.000 0.00 0.00 0.00 5.01
222 223 0.746923 GGGTATCCCAAGGTTCGTGC 60.747 60.000 0.00 0.00 44.65 5.34
266 267 3.557595 CGCCTCTCTAGCCAGTATTTTTG 59.442 47.826 0.00 0.00 0.00 2.44
276 277 3.810310 ATTATATGCGCCTCTCTAGCC 57.190 47.619 4.18 0.00 0.00 3.93
288 289 9.599322 CGACCACTCAATTTAGAAATTATATGC 57.401 33.333 0.05 0.00 36.52 3.14
312 313 1.481871 GTAAGGGGGACACTGATCGA 58.518 55.000 0.00 0.00 0.00 3.59
313 314 0.464452 GGTAAGGGGGACACTGATCG 59.536 60.000 0.00 0.00 0.00 3.69
314 315 0.464452 CGGTAAGGGGGACACTGATC 59.536 60.000 0.00 0.00 0.00 2.92
315 316 0.252558 ACGGTAAGGGGGACACTGAT 60.253 55.000 0.00 0.00 0.00 2.90
356 357 1.746470 AAATGGCTACGGTACTTGCC 58.254 50.000 9.34 9.34 45.10 4.52
358 359 3.749088 TGTCAAAATGGCTACGGTACTTG 59.251 43.478 0.00 0.00 0.00 3.16
419 428 2.584391 GGGGCACAAGGACTCGACT 61.584 63.158 0.00 0.00 0.00 4.18
474 484 1.855213 TTGACTTGGCATGTCGCAGC 61.855 55.000 23.38 5.80 45.17 5.25
475 485 0.167470 CTTGACTTGGCATGTCGCAG 59.833 55.000 23.38 18.56 45.17 5.18
476 486 0.534877 ACTTGACTTGGCATGTCGCA 60.535 50.000 23.38 14.31 45.17 5.10
477 487 0.166814 GACTTGACTTGGCATGTCGC 59.833 55.000 23.38 12.21 37.26 5.19
479 489 2.880890 ACTTGACTTGACTTGGCATGTC 59.119 45.455 22.59 22.59 41.02 3.06
480 490 2.880890 GACTTGACTTGACTTGGCATGT 59.119 45.455 5.63 5.63 0.00 3.21
481 491 2.880268 TGACTTGACTTGACTTGGCATG 59.120 45.455 0.00 0.00 0.00 4.06
485 2024 4.191544 TGACTTGACTTGACTTGACTTGG 58.808 43.478 0.00 0.00 0.00 3.61
488 2027 4.818546 CCATTGACTTGACTTGACTTGACT 59.181 41.667 0.00 0.00 0.00 3.41
490 2029 5.034852 TCCATTGACTTGACTTGACTTGA 57.965 39.130 0.00 0.00 0.00 3.02
552 2224 9.582431 CTATTCGTTTCCTACTTGTGAATTAGA 57.418 33.333 0.00 0.00 0.00 2.10
553 2225 8.328864 GCTATTCGTTTCCTACTTGTGAATTAG 58.671 37.037 0.00 0.00 0.00 1.73
554 2226 7.279313 GGCTATTCGTTTCCTACTTGTGAATTA 59.721 37.037 0.00 0.00 0.00 1.40
555 2227 6.093633 GGCTATTCGTTTCCTACTTGTGAATT 59.906 38.462 0.00 0.00 0.00 2.17
556 2228 5.585047 GGCTATTCGTTTCCTACTTGTGAAT 59.415 40.000 0.00 0.00 0.00 2.57
644 2369 7.392673 AGTGCTAATCTGAATTTGTGAACTGAT 59.607 33.333 0.00 0.00 0.00 2.90
748 2492 7.107542 AGGCTAGTGTTATGTTTTTCGGAATA 58.892 34.615 0.00 0.00 0.00 1.75
750 2494 5.310451 AGGCTAGTGTTATGTTTTTCGGAA 58.690 37.500 0.00 0.00 0.00 4.30
751 2495 4.901868 AGGCTAGTGTTATGTTTTTCGGA 58.098 39.130 0.00 0.00 0.00 4.55
752 2496 5.220605 GCTAGGCTAGTGTTATGTTTTTCGG 60.221 44.000 21.92 0.00 0.00 4.30
753 2497 5.350365 TGCTAGGCTAGTGTTATGTTTTTCG 59.650 40.000 21.92 0.00 0.00 3.46
762 2687 1.137086 GCTGCTGCTAGGCTAGTGTTA 59.863 52.381 21.92 6.91 36.03 2.41
769 2694 3.263859 TTGCTGCTGCTGCTAGGCT 62.264 57.895 27.67 0.00 40.48 4.58
779 2704 0.169672 CCGAATTGAGGTTGCTGCTG 59.830 55.000 0.00 0.00 0.00 4.41
903 2877 2.213499 GTGCTCAGTTATTATGCGGCT 58.787 47.619 0.00 0.00 0.00 5.52
906 2880 2.201732 ACGGTGCTCAGTTATTATGCG 58.798 47.619 0.00 0.00 0.00 4.73
907 2881 5.293569 ACTTAACGGTGCTCAGTTATTATGC 59.706 40.000 11.37 0.00 35.09 3.14
908 2882 6.705782 CACTTAACGGTGCTCAGTTATTATG 58.294 40.000 11.37 7.39 35.09 1.90
909 2883 6.903883 CACTTAACGGTGCTCAGTTATTAT 57.096 37.500 11.37 0.08 35.09 1.28
1047 3026 1.427809 CAGCAGATGATACCCCCAGA 58.572 55.000 0.00 0.00 0.00 3.86
1171 3150 2.266279 TGAGGAGGGGTTAACTTCCAG 58.734 52.381 19.39 0.00 0.00 3.86
1178 3157 2.595380 AGGAGGTATGAGGAGGGGTTAA 59.405 50.000 0.00 0.00 0.00 2.01
1394 3373 0.949105 GTCACCCGTGTCGAGCATTT 60.949 55.000 0.00 0.00 0.00 2.32
1407 3386 0.798776 CGACAAGCATGAAGTCACCC 59.201 55.000 0.00 0.00 32.68 4.61
1428 3407 3.672255 CTTTGCCGTGCCATCTGCG 62.672 63.158 0.00 0.00 45.60 5.18
1439 3418 0.537371 AAAGGTCTCCCACTTTGCCG 60.537 55.000 0.00 0.00 35.72 5.69
1440 3419 0.961753 CAAAGGTCTCCCACTTTGCC 59.038 55.000 4.48 0.00 44.62 4.52
1487 3466 1.369692 CCCACACGGAGCACTTGTA 59.630 57.895 0.00 0.00 0.00 2.41
1509 3488 2.495669 GCTTCTGAGTAGCTTGTCCTCT 59.504 50.000 3.67 0.00 35.74 3.69
1545 3527 2.348888 CCGGCCGTTGGAGTAGTCT 61.349 63.158 26.12 0.00 0.00 3.24
1557 3539 2.202892 GCTAGGAGAAACCGGCCG 60.203 66.667 21.04 21.04 44.74 6.13
1600 3582 4.261489 GGAATGCTCAGCCATTGAATACAG 60.261 45.833 0.00 0.00 35.67 2.74
1655 3637 1.000506 GTGAGCCGTTCCTAACTGTCA 59.999 52.381 0.00 0.00 0.00 3.58
1663 3645 2.030562 CAACCGTGAGCCGTTCCT 59.969 61.111 0.00 0.00 33.66 3.36
1724 3706 5.409520 GCTGAAGTAACATTGATCTGTGTCA 59.590 40.000 4.42 0.00 0.00 3.58
1738 3720 0.251165 TTGCCCCCTGCTGAAGTAAC 60.251 55.000 0.00 0.00 42.00 2.50
1740 3722 1.133809 AGTTGCCCCCTGCTGAAGTA 61.134 55.000 0.00 0.00 42.00 2.24
1755 3737 5.710513 TGAAGAAATCACCCATTGAGTTG 57.289 39.130 0.00 0.00 42.56 3.16
1806 3788 2.004733 GGGTACACATACTGCCGAAAC 58.995 52.381 0.00 0.00 0.00 2.78
1815 3797 4.202245 TCTGCTCTTTGGGTACACATAC 57.798 45.455 0.00 0.00 0.00 2.39
1849 3831 2.621998 CCTTCCATTGCAAGCTCCATAG 59.378 50.000 4.94 0.00 0.00 2.23
1884 3866 0.250234 TTTCGCAGATGTCCTCAGGG 59.750 55.000 0.00 0.00 35.04 4.45
1900 3882 5.102313 GCCTGCATTTACCATTACTGTTTC 58.898 41.667 0.00 0.00 0.00 2.78
1902 3884 4.085733 TGCCTGCATTTACCATTACTGTT 58.914 39.130 0.00 0.00 0.00 3.16
2026 4014 0.960861 GGCCTGCACCCTTTGTACTC 60.961 60.000 0.00 0.00 0.00 2.59
2080 4068 1.033746 AACTGCGCCATTGCTGCTAT 61.034 50.000 4.18 0.00 37.71 2.97
2081 4069 1.243342 AAACTGCGCCATTGCTGCTA 61.243 50.000 4.18 0.00 37.71 3.49
2134 4122 4.433615 CGGTATTGCTCATAGTCACAGTT 58.566 43.478 0.00 0.00 0.00 3.16
2136 4124 2.797156 GCGGTATTGCTCATAGTCACAG 59.203 50.000 0.00 0.00 0.00 3.66
2138 4126 2.135933 GGCGGTATTGCTCATAGTCAC 58.864 52.381 0.00 0.00 34.52 3.67
2212 4203 0.881118 TTTGGATCAAAGACCGCTGC 59.119 50.000 0.00 0.00 0.00 5.25
2217 4208 5.293324 GGTTTTTGTGTTTGGATCAAAGACC 59.707 40.000 14.94 11.62 43.78 3.85
2224 4215 3.803778 CAGCAGGTTTTTGTGTTTGGATC 59.196 43.478 0.00 0.00 0.00 3.36
2227 4218 2.093764 TCCAGCAGGTTTTTGTGTTTGG 60.094 45.455 0.00 0.00 35.89 3.28
2231 4222 2.733956 TCTTCCAGCAGGTTTTTGTGT 58.266 42.857 0.00 0.00 35.89 3.72
2238 4229 2.625314 GAGCTTTTTCTTCCAGCAGGTT 59.375 45.455 0.00 0.00 35.88 3.50
2274 4265 4.406456 TCTGGACAGTTTGTGCCATATTT 58.594 39.130 0.00 0.00 37.97 1.40
2307 4298 0.833287 TGCTCCTAGGCACCTTGATC 59.167 55.000 2.96 0.00 37.29 2.92
2421 4415 7.510407 AGATAAGGAGAAGGTTTAGCAATACC 58.490 38.462 0.00 0.00 34.54 2.73
2504 4498 2.100631 CCTGACGATTGCGGTGACC 61.101 63.158 0.00 0.00 43.17 4.02
2558 4552 1.239347 GGTTGCCTTCTCCAGTTCAC 58.761 55.000 0.00 0.00 0.00 3.18
2632 4626 0.456221 GCATGCTCATCTTGCAGCTT 59.544 50.000 11.37 0.00 44.04 3.74
2769 4763 0.798776 GAGTTCCCTCGTTGCACATG 59.201 55.000 0.00 0.00 0.00 3.21
2770 4764 0.396435 TGAGTTCCCTCGTTGCACAT 59.604 50.000 0.00 0.00 40.85 3.21
2778 4772 1.213013 CAGTCGGTGAGTTCCCTCG 59.787 63.158 0.00 0.00 40.85 4.63
2788 4782 4.111375 ACTCATAAACTAGCAGTCGGTG 57.889 45.455 0.00 0.00 0.00 4.94
2791 4785 6.020281 GTCATGAACTCATAAACTAGCAGTCG 60.020 42.308 0.00 0.00 34.26 4.18
2835 4829 1.404181 CGAGCATCACCGAAGAGGAAA 60.404 52.381 0.00 0.00 45.00 3.13
2907 4901 3.854666 GCACTCTTCATGCAAGTAGAGA 58.145 45.455 26.04 10.98 42.88 3.10
3018 5013 2.746362 CTGATTGGCTCGAAGAAGCTTT 59.254 45.455 0.00 0.00 34.09 3.51
3206 5201 2.101917 GCCCAGTAAGTTAGTATCGCCA 59.898 50.000 0.00 0.00 0.00 5.69
3256 5251 0.550914 TCACCCTCCACAAGCAAGTT 59.449 50.000 0.00 0.00 0.00 2.66
3455 5450 4.223320 ACTCATTTGTTAACAAGCACGG 57.777 40.909 19.72 12.86 37.15 4.94
3473 5473 1.881973 TCTTGCTTCATGCCACAACTC 59.118 47.619 0.00 0.00 42.00 3.01
3480 5480 3.720949 TGCATAATCTTGCTTCATGCC 57.279 42.857 0.00 0.00 43.18 4.40
3506 5506 8.306038 CAATGGAAAACAGTTTCAGATTATCCA 58.694 33.333 13.38 13.38 44.29 3.41
3518 5518 5.105392 TGTGAAGCTTCAATGGAAAACAGTT 60.105 36.000 29.99 0.00 39.21 3.16
3528 5528 6.017400 ACCATTAACTGTGAAGCTTCAATG 57.983 37.500 29.99 25.06 39.21 2.82
3647 5654 5.353938 AGATATACGGCTGCTTACGAAAAA 58.646 37.500 0.00 0.00 0.00 1.94
3707 5715 6.348458 CGAGGCATTGTAGAGAATGTTTGAAA 60.348 38.462 1.85 0.00 35.98 2.69
3709 5717 4.631377 CGAGGCATTGTAGAGAATGTTTGA 59.369 41.667 1.85 0.00 35.98 2.69
3710 5718 4.393062 ACGAGGCATTGTAGAGAATGTTTG 59.607 41.667 0.00 0.00 35.98 2.93
3711 5719 4.579869 ACGAGGCATTGTAGAGAATGTTT 58.420 39.130 0.00 0.00 35.98 2.83
3712 5720 4.207891 ACGAGGCATTGTAGAGAATGTT 57.792 40.909 0.00 0.00 35.98 2.71
3713 5721 3.895232 ACGAGGCATTGTAGAGAATGT 57.105 42.857 0.00 0.00 35.98 2.71
3714 5722 5.580691 TGTTTACGAGGCATTGTAGAGAATG 59.419 40.000 0.00 0.00 36.55 2.67
3715 5723 5.730550 TGTTTACGAGGCATTGTAGAGAAT 58.269 37.500 0.00 0.00 0.00 2.40
3716 5724 5.142061 TGTTTACGAGGCATTGTAGAGAA 57.858 39.130 0.00 0.00 0.00 2.87
3717 5725 4.794278 TGTTTACGAGGCATTGTAGAGA 57.206 40.909 0.00 0.00 0.00 3.10
3718 5726 5.856126 TTTGTTTACGAGGCATTGTAGAG 57.144 39.130 0.00 0.00 0.00 2.43
3719 5727 6.483974 TCTTTTTGTTTACGAGGCATTGTAGA 59.516 34.615 0.00 0.00 0.00 2.59
3720 5728 6.664515 TCTTTTTGTTTACGAGGCATTGTAG 58.335 36.000 0.00 0.00 0.00 2.74
3721 5729 6.621316 TCTTTTTGTTTACGAGGCATTGTA 57.379 33.333 0.00 0.00 0.00 2.41
3722 5730 5.508200 TCTTTTTGTTTACGAGGCATTGT 57.492 34.783 0.00 0.00 0.00 2.71
3723 5731 6.820470 TTTCTTTTTGTTTACGAGGCATTG 57.180 33.333 0.00 0.00 0.00 2.82
3724 5732 6.814146 TGTTTTCTTTTTGTTTACGAGGCATT 59.186 30.769 0.00 0.00 0.00 3.56
3725 5733 6.334202 TGTTTTCTTTTTGTTTACGAGGCAT 58.666 32.000 0.00 0.00 0.00 4.40
3726 5734 5.710984 TGTTTTCTTTTTGTTTACGAGGCA 58.289 33.333 0.00 0.00 0.00 4.75
3727 5735 6.822073 ATGTTTTCTTTTTGTTTACGAGGC 57.178 33.333 0.00 0.00 0.00 4.70
3728 5736 8.628882 AGAATGTTTTCTTTTTGTTTACGAGG 57.371 30.769 0.00 0.00 39.18 4.63
3729 5737 9.503427 AGAGAATGTTTTCTTTTTGTTTACGAG 57.497 29.630 0.00 0.00 42.34 4.18
3744 5752 9.508642 CCCTTTTTCTAGTCTAGAGAATGTTTT 57.491 33.333 12.35 0.00 35.96 2.43
3745 5753 8.661345 ACCCTTTTTCTAGTCTAGAGAATGTTT 58.339 33.333 12.35 3.52 35.96 2.83
3746 5754 8.208575 ACCCTTTTTCTAGTCTAGAGAATGTT 57.791 34.615 12.35 3.79 35.96 2.71
3757 5803 5.481122 AGTCACCTCTACCCTTTTTCTAGTC 59.519 44.000 0.00 0.00 0.00 2.59
3849 5895 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
3850 5896 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
3851 5897 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
3852 5898 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
3853 5899 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
3854 5900 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
3859 5905 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
3861 5907 0.556380 AAGGAGGAGGAGGAGGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
3862 5908 0.105709 GAAGGAGGAGGAGGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
3863 5909 0.933700 AGAAGGAGGAGGAGGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
3864 5910 1.289530 GAAGAAGGAGGAGGAGGAGGA 59.710 57.143 0.00 0.00 0.00 3.71
3865 5911 1.290732 AGAAGAAGGAGGAGGAGGAGG 59.709 57.143 0.00 0.00 0.00 4.30
3868 5914 3.114643 AGAAGAAGAAGGAGGAGGAGG 57.885 52.381 0.00 0.00 0.00 4.30
3870 5916 6.987557 ACTAATAGAAGAAGAAGGAGGAGGA 58.012 40.000 0.00 0.00 0.00 3.71
3871 5917 7.014230 CAGACTAATAGAAGAAGAAGGAGGAGG 59.986 44.444 0.00 0.00 0.00 4.30
3872 5918 7.470009 GCAGACTAATAGAAGAAGAAGGAGGAG 60.470 44.444 0.00 0.00 0.00 3.69
3873 5919 6.322712 GCAGACTAATAGAAGAAGAAGGAGGA 59.677 42.308 0.00 0.00 0.00 3.71
3874 5920 6.097554 TGCAGACTAATAGAAGAAGAAGGAGG 59.902 42.308 0.00 0.00 0.00 4.30
3875 5921 6.978080 GTGCAGACTAATAGAAGAAGAAGGAG 59.022 42.308 0.00 0.00 0.00 3.69
3876 5922 6.665680 AGTGCAGACTAATAGAAGAAGAAGGA 59.334 38.462 0.00 0.00 0.00 3.36
3878 5924 7.319646 ACAGTGCAGACTAATAGAAGAAGAAG 58.680 38.462 0.00 0.00 0.00 2.85
3880 5926 6.842437 ACAGTGCAGACTAATAGAAGAAGA 57.158 37.500 0.00 0.00 0.00 2.87
3883 5929 9.409918 AGTAATACAGTGCAGACTAATAGAAGA 57.590 33.333 0.00 0.00 0.00 2.87
3884 5930 9.457110 CAGTAATACAGTGCAGACTAATAGAAG 57.543 37.037 0.00 0.00 0.00 2.85
3885 5931 8.414003 CCAGTAATACAGTGCAGACTAATAGAA 58.586 37.037 0.00 0.00 0.00 2.10
3887 5933 7.863375 GTCCAGTAATACAGTGCAGACTAATAG 59.137 40.741 0.00 0.00 0.00 1.73
3893 6304 4.177026 CTGTCCAGTAATACAGTGCAGAC 58.823 47.826 0.00 0.00 0.00 3.51
3904 6315 4.396166 GCATTGCTAACACTGTCCAGTAAT 59.604 41.667 0.16 2.89 40.20 1.89
3905 6316 3.751175 GCATTGCTAACACTGTCCAGTAA 59.249 43.478 0.16 0.00 40.20 2.24
3906 6317 3.244387 TGCATTGCTAACACTGTCCAGTA 60.244 43.478 10.49 0.00 40.20 2.74
3908 6319 2.153645 TGCATTGCTAACACTGTCCAG 58.846 47.619 10.49 0.00 0.00 3.86
3910 6321 2.160417 GTCTGCATTGCTAACACTGTCC 59.840 50.000 10.49 0.00 0.00 4.02
3911 6322 2.807967 TGTCTGCATTGCTAACACTGTC 59.192 45.455 10.49 0.00 0.00 3.51
3916 6327 6.183360 GCTAATTACTGTCTGCATTGCTAACA 60.183 38.462 10.49 12.32 0.00 2.41
3949 6389 7.253905 ACACTGTCCAGTAATACCAGTAATT 57.746 36.000 0.00 0.00 40.20 1.40
3950 6390 6.869206 ACACTGTCCAGTAATACCAGTAAT 57.131 37.500 0.00 0.00 40.20 1.89
3951 6391 6.675413 AACACTGTCCAGTAATACCAGTAA 57.325 37.500 0.00 0.00 40.20 2.24
3952 6392 6.950041 ACTAACACTGTCCAGTAATACCAGTA 59.050 38.462 0.00 0.00 40.20 2.74
3954 6394 6.100004 CACTAACACTGTCCAGTAATACCAG 58.900 44.000 0.00 0.00 40.20 4.00
3956 6396 5.416947 CCACTAACACTGTCCAGTAATACC 58.583 45.833 0.00 0.00 40.20 2.73
3957 6397 5.416947 CCCACTAACACTGTCCAGTAATAC 58.583 45.833 0.00 0.00 40.20 1.89
3958 6398 4.468510 CCCCACTAACACTGTCCAGTAATA 59.531 45.833 0.00 0.00 40.20 0.98
3959 6399 3.263425 CCCCACTAACACTGTCCAGTAAT 59.737 47.826 0.00 0.00 40.20 1.89
3960 6400 2.635915 CCCCACTAACACTGTCCAGTAA 59.364 50.000 0.00 0.00 40.20 2.24
3963 6403 1.348064 TCCCCACTAACACTGTCCAG 58.652 55.000 0.00 0.00 0.00 3.86
3965 6405 3.434940 AATTCCCCACTAACACTGTCC 57.565 47.619 0.00 0.00 0.00 4.02
3966 6406 4.935808 CACTAATTCCCCACTAACACTGTC 59.064 45.833 0.00 0.00 0.00 3.51
3968 6408 5.046591 TCTCACTAATTCCCCACTAACACTG 60.047 44.000 0.00 0.00 0.00 3.66
3969 6409 5.091552 TCTCACTAATTCCCCACTAACACT 58.908 41.667 0.00 0.00 0.00 3.55
3970 6410 5.416271 TCTCACTAATTCCCCACTAACAC 57.584 43.478 0.00 0.00 0.00 3.32
3971 6411 6.636454 ATTCTCACTAATTCCCCACTAACA 57.364 37.500 0.00 0.00 0.00 2.41
3972 6412 7.793036 AGTATTCTCACTAATTCCCCACTAAC 58.207 38.462 0.00 0.00 0.00 2.34
3973 6413 7.844779 AGAGTATTCTCACTAATTCCCCACTAA 59.155 37.037 1.92 0.00 42.66 2.24
3974 6414 7.363031 AGAGTATTCTCACTAATTCCCCACTA 58.637 38.462 1.92 0.00 42.66 2.74
3976 6416 6.487299 AGAGTATTCTCACTAATTCCCCAC 57.513 41.667 1.92 0.00 42.66 4.61
3977 6417 6.672218 TGAAGAGTATTCTCACTAATTCCCCA 59.328 38.462 1.92 0.00 42.66 4.96
3978 6418 6.987404 GTGAAGAGTATTCTCACTAATTCCCC 59.013 42.308 1.92 0.00 42.66 4.81
3979 6419 7.708752 CAGTGAAGAGTATTCTCACTAATTCCC 59.291 40.741 15.06 0.00 42.66 3.97
3980 6420 8.254508 ACAGTGAAGAGTATTCTCACTAATTCC 58.745 37.037 15.06 0.00 42.66 3.01
3981 6421 9.296400 GACAGTGAAGAGTATTCTCACTAATTC 57.704 37.037 15.06 10.63 42.66 2.17
3984 6424 7.761038 TGACAGTGAAGAGTATTCTCACTAA 57.239 36.000 15.06 6.54 42.66 2.24
3985 6425 7.575909 GCTTGACAGTGAAGAGTATTCTCACTA 60.576 40.741 3.60 3.87 42.66 2.74
3986 6426 6.656632 TTGACAGTGAAGAGTATTCTCACT 57.343 37.500 11.76 11.76 42.66 3.41
3987 6427 5.347364 GCTTGACAGTGAAGAGTATTCTCAC 59.653 44.000 3.60 8.69 42.66 3.51
3988 6428 5.011023 TGCTTGACAGTGAAGAGTATTCTCA 59.989 40.000 3.60 0.00 42.66 3.27
3989 6429 5.473931 TGCTTGACAGTGAAGAGTATTCTC 58.526 41.667 3.60 0.00 40.70 2.87
3990 6430 5.474578 TGCTTGACAGTGAAGAGTATTCT 57.525 39.130 3.60 0.00 34.29 2.40
3991 6431 5.776519 CTGCTTGACAGTGAAGAGTATTC 57.223 43.478 3.60 0.00 41.86 1.75
4026 6466 7.040271 GCCAAGTACTGTTTCAATTACCCTTAA 60.040 37.037 0.00 0.00 0.00 1.85
4027 6467 6.431852 GCCAAGTACTGTTTCAATTACCCTTA 59.568 38.462 0.00 0.00 0.00 2.69
4028 6468 5.243060 GCCAAGTACTGTTTCAATTACCCTT 59.757 40.000 0.00 0.00 0.00 3.95
4029 6469 4.765339 GCCAAGTACTGTTTCAATTACCCT 59.235 41.667 0.00 0.00 0.00 4.34
4033 6473 7.307514 CGTTGTAGCCAAGTACTGTTTCAATTA 60.308 37.037 0.00 0.00 0.00 1.40
4034 6474 6.512741 CGTTGTAGCCAAGTACTGTTTCAATT 60.513 38.462 0.00 0.00 0.00 2.32
4036 6476 4.271533 CGTTGTAGCCAAGTACTGTTTCAA 59.728 41.667 0.00 0.00 0.00 2.69
4037 6477 3.805422 CGTTGTAGCCAAGTACTGTTTCA 59.195 43.478 0.00 0.00 0.00 2.69
4038 6478 3.185797 CCGTTGTAGCCAAGTACTGTTTC 59.814 47.826 0.00 0.00 0.00 2.78
4040 6480 2.762745 CCGTTGTAGCCAAGTACTGTT 58.237 47.619 0.00 0.00 0.00 3.16
4041 6481 1.607251 GCCGTTGTAGCCAAGTACTGT 60.607 52.381 0.00 0.00 0.00 3.55
4042 6482 1.076332 GCCGTTGTAGCCAAGTACTG 58.924 55.000 0.00 0.00 0.00 2.74
4043 6483 0.682852 TGCCGTTGTAGCCAAGTACT 59.317 50.000 0.00 0.00 0.00 2.73
4044 6484 1.734163 ATGCCGTTGTAGCCAAGTAC 58.266 50.000 0.00 0.00 0.00 2.73
4045 6485 2.498481 ACTATGCCGTTGTAGCCAAGTA 59.502 45.455 0.00 0.00 0.00 2.24
4046 6486 1.278127 ACTATGCCGTTGTAGCCAAGT 59.722 47.619 0.00 0.00 0.00 3.16
4047 6487 2.024176 ACTATGCCGTTGTAGCCAAG 57.976 50.000 0.00 0.00 0.00 3.61
4048 6488 2.498481 AGTACTATGCCGTTGTAGCCAA 59.502 45.455 0.00 0.00 0.00 4.52
4049 6489 2.104967 AGTACTATGCCGTTGTAGCCA 58.895 47.619 0.00 0.00 0.00 4.75
4050 6490 2.884894 AGTACTATGCCGTTGTAGCC 57.115 50.000 0.00 0.00 0.00 3.93
4051 6491 3.121544 GGAAGTACTATGCCGTTGTAGC 58.878 50.000 0.00 0.00 0.00 3.58
4052 6492 4.110482 GTGGAAGTACTATGCCGTTGTAG 58.890 47.826 0.00 0.00 0.00 2.74
4053 6493 3.119029 GGTGGAAGTACTATGCCGTTGTA 60.119 47.826 0.00 0.00 0.00 2.41
4054 6494 2.354403 GGTGGAAGTACTATGCCGTTGT 60.354 50.000 0.00 0.00 0.00 3.32
4055 6495 2.277084 GGTGGAAGTACTATGCCGTTG 58.723 52.381 0.00 0.00 0.00 4.10
4056 6496 1.208776 GGGTGGAAGTACTATGCCGTT 59.791 52.381 0.00 0.00 0.00 4.44
4057 6497 0.828677 GGGTGGAAGTACTATGCCGT 59.171 55.000 0.00 0.00 0.00 5.68
4058 6498 0.828022 TGGGTGGAAGTACTATGCCG 59.172 55.000 0.00 0.00 0.00 5.69
4059 6499 1.838077 AGTGGGTGGAAGTACTATGCC 59.162 52.381 0.00 0.00 0.00 4.40
4060 6500 2.500098 TGAGTGGGTGGAAGTACTATGC 59.500 50.000 0.00 0.00 0.00 3.14
4061 6501 3.769844 AGTGAGTGGGTGGAAGTACTATG 59.230 47.826 0.00 0.00 0.00 2.23
4062 6502 3.769844 CAGTGAGTGGGTGGAAGTACTAT 59.230 47.826 0.00 0.00 0.00 2.12
4063 6503 3.162666 CAGTGAGTGGGTGGAAGTACTA 58.837 50.000 0.00 0.00 0.00 1.82
4064 6504 1.971357 CAGTGAGTGGGTGGAAGTACT 59.029 52.381 0.00 0.00 0.00 2.73
4065 6505 1.968493 TCAGTGAGTGGGTGGAAGTAC 59.032 52.381 0.00 0.00 0.00 2.73
4066 6506 2.391926 TCAGTGAGTGGGTGGAAGTA 57.608 50.000 0.00 0.00 0.00 2.24
4067 6507 1.507140 TTCAGTGAGTGGGTGGAAGT 58.493 50.000 0.00 0.00 0.00 3.01
4068 6508 2.867109 ATTCAGTGAGTGGGTGGAAG 57.133 50.000 0.00 0.00 0.00 3.46
4069 6509 3.117701 TGAAATTCAGTGAGTGGGTGGAA 60.118 43.478 0.00 0.00 0.00 3.53
4070 6510 2.441375 TGAAATTCAGTGAGTGGGTGGA 59.559 45.455 0.00 0.00 0.00 4.02
4071 6511 2.554032 GTGAAATTCAGTGAGTGGGTGG 59.446 50.000 0.00 0.00 0.00 4.61
4072 6512 2.554032 GGTGAAATTCAGTGAGTGGGTG 59.446 50.000 0.00 0.00 0.00 4.61
4073 6513 2.174639 TGGTGAAATTCAGTGAGTGGGT 59.825 45.455 0.00 0.00 0.00 4.51
4074 6514 2.862541 TGGTGAAATTCAGTGAGTGGG 58.137 47.619 0.00 0.00 0.00 4.61
4075 6515 4.916983 TTTGGTGAAATTCAGTGAGTGG 57.083 40.909 0.00 0.00 0.00 4.00
4076 6516 7.113404 CGTAATTTTGGTGAAATTCAGTGAGTG 59.887 37.037 0.00 0.00 42.81 3.51
4114 6555 3.448340 CGATTTGGGCGTTGGGGG 61.448 66.667 0.00 0.00 0.00 5.40
4141 6582 1.407979 GCTGCTGAATCCCTTTCATGG 59.592 52.381 0.00 0.00 43.30 3.66
4142 6583 1.407979 GGCTGCTGAATCCCTTTCATG 59.592 52.381 0.00 0.00 43.30 3.07
4143 6584 1.006281 TGGCTGCTGAATCCCTTTCAT 59.994 47.619 0.00 0.00 43.30 2.57
4144 6585 0.405198 TGGCTGCTGAATCCCTTTCA 59.595 50.000 0.00 0.00 42.09 2.69
4145 6586 1.101331 CTGGCTGCTGAATCCCTTTC 58.899 55.000 0.00 0.00 34.72 2.62
4146 6587 0.700564 TCTGGCTGCTGAATCCCTTT 59.299 50.000 0.00 0.00 0.00 3.11
4147 6588 0.700564 TTCTGGCTGCTGAATCCCTT 59.299 50.000 0.00 0.00 0.00 3.95
4148 6589 0.255318 CTTCTGGCTGCTGAATCCCT 59.745 55.000 0.00 0.00 0.00 4.20
4206 6647 0.250252 TCGAGTGCTTTGTGGATGCA 60.250 50.000 0.00 0.00 36.21 3.96
4207 6648 0.166814 GTCGAGTGCTTTGTGGATGC 59.833 55.000 0.00 0.00 0.00 3.91
4208 6649 1.511850 TGTCGAGTGCTTTGTGGATG 58.488 50.000 0.00 0.00 0.00 3.51
4209 6650 2.254546 TTGTCGAGTGCTTTGTGGAT 57.745 45.000 0.00 0.00 0.00 3.41
4210 6651 1.668751 GTTTGTCGAGTGCTTTGTGGA 59.331 47.619 0.00 0.00 0.00 4.02
4211 6652 1.594518 CGTTTGTCGAGTGCTTTGTGG 60.595 52.381 0.00 0.00 42.86 4.17
4212 6653 1.594518 CCGTTTGTCGAGTGCTTTGTG 60.595 52.381 0.00 0.00 42.86 3.33
4213 6654 0.655733 CCGTTTGTCGAGTGCTTTGT 59.344 50.000 0.00 0.00 42.86 2.83
4214 6655 0.657368 GCCGTTTGTCGAGTGCTTTG 60.657 55.000 0.00 0.00 42.86 2.77
4215 6656 1.092921 TGCCGTTTGTCGAGTGCTTT 61.093 50.000 0.00 0.00 42.86 3.51
4217 6658 1.092921 TTTGCCGTTTGTCGAGTGCT 61.093 50.000 0.00 0.00 42.86 4.40
4234 6675 3.224007 ATCCCAACCCTGCCGCTTT 62.224 57.895 0.00 0.00 0.00 3.51
4258 6752 1.682323 GTACGTCTCTTCTCCCCATCC 59.318 57.143 0.00 0.00 0.00 3.51
4372 6874 3.999663 AGATTTGCTTTGGACTCTTCTCG 59.000 43.478 0.00 0.00 0.00 4.04
4373 6875 4.999950 TCAGATTTGCTTTGGACTCTTCTC 59.000 41.667 0.00 0.00 0.00 2.87
4374 6876 4.978099 TCAGATTTGCTTTGGACTCTTCT 58.022 39.130 0.00 0.00 0.00 2.85
4377 6879 3.080319 GCTCAGATTTGCTTTGGACTCT 58.920 45.455 0.00 0.00 0.00 3.24
4391 6893 2.237143 TCTCCAATCAAACGGCTCAGAT 59.763 45.455 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.