AutoCloner

Multiple sequence alignment - TraesCS2A01G052100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G052100	chr2A	100.000	3748	0	0	1	3748	20591524	20595271	0.000000e+00	6922.0
1	TraesCS2A01G052100	chr2A	94.085	710	37	5	3044	3748	17237937	17237228	0.000000e+00	1074.0
2	TraesCS2A01G052100	chr2A	87.155	724	69	11	1006	1727	20386643	20385942	0.000000e+00	800.0
3	TraesCS2A01G052100	chr2A	85.425	741	85	15	2237	2972	20385255	20384533	0.000000e+00	749.0
4	TraesCS2A01G052100	chr2A	85.270	740	86	15	2237	2972	20604611	20605331	0.000000e+00	741.0
5	TraesCS2A01G052100	chr2A	93.512	447	21	5	3309	3748	16225912	16226357	0.000000e+00	658.0
6	TraesCS2A01G052100	chr2A	90.683	483	42	3	1243	1723	20603318	20603799	1.140000e-179	640.0
7	TraesCS2A01G052100	chr2A	89.484	504	38	10	3257	3748	764525503	764526003	1.140000e-174	623.0
8	TraesCS2A01G052100	chr2A	93.548	248	15	1	3044	3290	15534611	15534858	5.910000e-98	368.0
9	TraesCS2A01G052100	chr2A	92.157	255	18	2	3041	3293	20730249	20730503	3.560000e-95	359.0
10	TraesCS2A01G052100	chr2A	84.940	166	18	6	1085	1249	20602980	20603139	1.080000e-35	161.0
11	TraesCS2A01G052100	chr2D	90.453	2472	117	40	638	3041	19241407	19238987	0.000000e+00	3147.0
12	TraesCS2A01G052100	chr2D	87.349	2561	180	47	571	3041	19534662	19532156	0.000000e+00	2802.0
13	TraesCS2A01G052100	chr2D	92.556	712	39	7	3	704	19242114	19241407	0.000000e+00	1009.0
14	TraesCS2A01G052100	chr2D	83.890	838	101	24	2181	3013	19561541	19560733	0.000000e+00	769.0
15	TraesCS2A01G052100	chr2D	83.516	728	100	13	2247	2973	19529253	19528545	0.000000e+00	662.0
16	TraesCS2A01G052100	chr2D	85.424	542	59	11	3	538	19535464	19534937	2.550000e-151	545.0
17	TraesCS2A01G052100	chr2D	86.946	429	45	4	1043	1468	19563425	19563005	4.380000e-129	472.0
18	TraesCS2A01G052100	chr2D	85.200	250	28	4	1549	1791	19562987	19562740	8.040000e-62	248.0
19	TraesCS2A01G052100	chr2D	85.714	161	21	2	1789	1947	572684769	572684609	6.440000e-38	169.0
20	TraesCS2A01G052100	chrUn	97.324	710	13	3	3043	3748	12508726	12508019	0.000000e+00	1201.0
21	TraesCS2A01G052100	chrUn	94.567	497	21	3	3257	3748	207752953	207752458	0.000000e+00	763.0
22	TraesCS2A01G052100	chrUn	94.567	497	21	3	3257	3748	207774844	207774349	0.000000e+00	763.0
23	TraesCS2A01G052100	chrUn	84.651	215	25	6	1583	1791	371735964	371735752	1.360000e-49	207.0
24	TraesCS2A01G052100	chr2B	86.276	1093	86	22	799	1857	32125683	32124621	0.000000e+00	1129.0
25	TraesCS2A01G052100	chr2B	93.852	732	34	7	1	722	32126401	32125671	0.000000e+00	1092.0
26	TraesCS2A01G052100	chr2B	90.661	514	44	4	2184	2695	32124298	32123787	0.000000e+00	680.0
27	TraesCS2A01G052100	chr2B	88.716	514	42	8	3250	3748	32934223	32934735	6.880000e-172	614.0
28	TraesCS2A01G052100	chr2B	87.395	119	11	2	1894	2008	32124626	32124508	2.350000e-27	134.0
29	TraesCS2A01G052100	chr3D	84.606	838	97	22	2181	3013	589667454	589668264	0.000000e+00	804.0
30	TraesCS2A01G052100	chr3D	85.213	541	61	11	3	538	589705499	589706025	4.260000e-149	538.0
31	TraesCS2A01G052100	chr3D	85.259	502	40	12	571	1047	589706301	589706793	1.560000e-133	486.0
32	TraesCS2A01G052100	chr3D	90.341	176	15	1	1599	1774	589666566	589666739	2.910000e-56	230.0
33	TraesCS2A01G052100	chr3D	90.341	176	15	1	1599	1774	589710243	589710416	2.910000e-56	230.0
34	TraesCS2A01G052100	chr3D	84.472	161	23	1	1789	1947	479626902	479627062	1.390000e-34	158.0
35	TraesCS2A01G052100	chr3D	83.951	162	24	1	1788	1947	149764785	149764624	1.800000e-33	154.0
36	TraesCS2A01G052100	chr3D	87.755	98	12	0	950	1047	589663397	589663494	8.510000e-22	115.0
37	TraesCS2A01G052100	chr6A	93.145	496	30	2	3257	3748	74221292	74221787	0.000000e+00	725.0
38	TraesCS2A01G052100	chr6A	92.430	251	19	0	3042	3292	612616684	612616434	3.560000e-95	359.0
39	TraesCS2A01G052100	chr7A	92.601	446	25	6	3309	3748	15149558	15149115	5.280000e-178	634.0
40	TraesCS2A01G052100	chr7A	92.829	251	17	1	3044	3293	729407689	729407939	2.750000e-96	363.0
41	TraesCS2A01G052100	chr6B	88.224	518	43	12	3245	3748	206407291	206407804	1.490000e-168	603.0
42	TraesCS2A01G052100	chr4A	87.115	520	45	17	3245	3748	705008530	705008017	1.510000e-158	569.0
43	TraesCS2A01G052100	chr7B	92.636	258	17	2	3038	3293	397764891	397765148	1.640000e-98	370.0
44	TraesCS2A01G052100	chr1A	92.885	253	17	1	3042	3293	590812235	590811983	2.130000e-97	366.0
45	TraesCS2A01G052100	chr1B	92.520	254	18	1	3044	3296	21624561	21624308	2.750000e-96	363.0
46	TraesCS2A01G052100	chr1D	88.608	237	23	3	1553	1788	392563558	392563791	6.130000e-73	285.0
47	TraesCS2A01G052100	chr5B	85.714	161	21	1	1789	1947	539314282	539314442	6.440000e-38	169.0
48	TraesCS2A01G052100	chr5B	84.397	141	18	4	1606	1745	272670586	272670723	6.530000e-28	135.0
49	TraesCS2A01G052100	chr5A	84.940	166	23	1	1788	1951	529307306	529307141	2.320000e-37	167.0
50	TraesCS2A01G052100	chr5A	85.000	140	19	2	1606	1745	323352457	323352594	1.400000e-29	141.0
51	TraesCS2A01G052100	chr4B	85.093	161	22	1	1789	1947	28724304	28724144	3.000000e-36	163.0
52	TraesCS2A01G052100	chr4D	84.472	161	23	1	1789	1947	21147732	21147892	1.390000e-34	158.0
53	TraesCS2A01G052100	chr4D	75.904	166	31	8	1789	1947	25379686	25379849	4.010000e-10	76.8
54	TraesCS2A01G052100	chr5D	85.000	140	19	2	1606	1745	232417897	232417760	1.400000e-29	141.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G052100	chr2A	20591524	20595271	3747	False	6922.000000	6922	100.000000	1	3748	1	chr2A.!!$F3	3747
1	TraesCS2A01G052100	chr2A	17237228	17237937	709	True	1074.000000	1074	94.085000	3044	3748	1	chr2A.!!$R1	704
2	TraesCS2A01G052100	chr2A	20384533	20386643	2110	True	774.500000	800	86.290000	1006	2972	2	chr2A.!!$R2	1966
3	TraesCS2A01G052100	chr2A	764525503	764526003	500	False	623.000000	623	89.484000	3257	3748	1	chr2A.!!$F5	491
4	TraesCS2A01G052100	chr2A	20602980	20605331	2351	False	514.000000	741	86.964333	1085	2972	3	chr2A.!!$F6	1887
5	TraesCS2A01G052100	chr2D	19238987	19242114	3127	True	2078.000000	3147	91.504500	3	3041	2	chr2D.!!$R2	3038
6	TraesCS2A01G052100	chr2D	19528545	19535464	6919	True	1336.333333	2802	85.429667	3	3041	3	chr2D.!!$R3	3038
7	TraesCS2A01G052100	chr2D	19560733	19563425	2692	True	496.333333	769	85.345333	1043	3013	3	chr2D.!!$R4	1970
8	TraesCS2A01G052100	chrUn	12508019	12508726	707	True	1201.000000	1201	97.324000	3043	3748	1	chrUn.!!$R1	705
9	TraesCS2A01G052100	chr2B	32123787	32126401	2614	True	758.750000	1129	89.546000	1	2695	4	chr2B.!!$R1	2694
10	TraesCS2A01G052100	chr2B	32934223	32934735	512	False	614.000000	614	88.716000	3250	3748	1	chr2B.!!$F1	498
11	TraesCS2A01G052100	chr3D	589705499	589710416	4917	False	418.000000	538	86.937667	3	1774	3	chr3D.!!$F3	1771
12	TraesCS2A01G052100	chr3D	589663397	589668264	4867	False	383.000000	804	87.567333	950	3013	3	chr3D.!!$F2	2063
13	TraesCS2A01G052100	chr6B	206407291	206407804	513	False	603.000000	603	88.224000	3245	3748	1	chr6B.!!$F1	503
14	TraesCS2A01G052100	chr4A	705008017	705008530	513	True	569.000000	569	87.115000	3245	3748	1	chr4A.!!$R1	503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
781	1129	0.549469	TCCTGATGGATGCATGCACT	59.451	50.0	25.37	12.53	37.46	4.40	F
1275	5268	0.171231	CATCTGCCTCTTCGACGACA	59.829	55.0	0.00	0.00	0.00	4.35	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2430	7767	1.108776	CCATGCCAGGGTCATTCTTG	58.891	55.0	0.0	0.0	0.00	3.02	R
3001	12031	0.104934	AACCACCAGGAGAGGACACT	60.105	55.0	0.0	0.0	38.69	3.55	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
250	263	1.064979	GGGGTATGGAGCCTTTTTCGA	60.065	52.381	0.00	0.00	43.31	3.71
371	385	4.694339	CTCCCTTCGATCCGAAATAAGTT	58.306	43.478	3.38	0.00	45.23	2.66
553	568	5.817816	CCAAACATACAGGAGGTCTGATAAC	59.182	44.000	0.00	0.00	46.18	1.89
781	1129	0.549469	TCCTGATGGATGCATGCACT	59.451	50.000	25.37	12.53	37.46	4.40
889	1245	2.317609	CCGGCCAGTCAAACGTCTG	61.318	63.158	2.24	0.00	0.00	3.51
901	1257	1.546961	AACGTCTGGTACCTCTCCTG	58.453	55.000	14.36	0.80	0.00	3.86
908	1264	0.614979	GGTACCTCTCCTGGTGCTCA	60.615	60.000	4.06	0.00	41.50	4.26
1161	4968	1.493950	CTCCGAGATGGACGCATTGC	61.494	60.000	0.00	0.00	43.74	3.56
1181	4988	1.552337	CTCTTACTCAGGAGGCAGCAA	59.448	52.381	0.83	0.00	0.00	3.91
1221	5029	4.498520	CGCTCATCCTGCCGACGT	62.499	66.667	0.00	0.00	0.00	4.34
1275	5268	0.171231	CATCTGCCTCTTCGACGACA	59.829	55.000	0.00	0.00	0.00	4.35
1277	5270	1.746470	TCTGCCTCTTCGACGACATA	58.254	50.000	0.00	0.00	0.00	2.29
1280	5273	3.130516	TCTGCCTCTTCGACGACATAATT	59.869	43.478	0.00	0.00	0.00	1.40
1291	5284	3.780902	ACGACATAATTGACTGCATCGA	58.219	40.909	6.07	0.00	32.83	3.59
1304	5297	1.816537	CATCGACGGGGTCATGTCT	59.183	57.895	0.00	0.00	32.93	3.41
1316	5309	0.636647	TCATGTCTAGGCTCCAGGGA	59.363	55.000	0.00	0.00	0.00	4.20
1317	5310	0.755686	CATGTCTAGGCTCCAGGGAC	59.244	60.000	0.00	0.00	0.00	4.46
1323	5316	0.324738	TAGGCTCCAGGGACTCAGTG	60.325	60.000	0.00	0.00	34.60	3.66
1342	5338	2.514592	CGCAGGCGGTCATGGATT	60.515	61.111	5.63	0.00	35.56	3.01
1417	5413	1.228894	AGGGACAGGACGAGAAGCA	60.229	57.895	0.00	0.00	0.00	3.91
1457	5453	7.792364	TGGTCAGAAGAGAAGGTTAGAATTA	57.208	36.000	0.00	0.00	0.00	1.40
1512	5555	9.778993	ATTGACTTAGTTCAAATTTGATCATCG	57.221	29.630	24.27	15.93	38.95	3.84
1578	5625	3.435327	TGCATTTCACGTATCTCACCAAC	59.565	43.478	0.00	0.00	0.00	3.77
1591	5638	3.820467	TCTCACCAACTAATTGCCACTTG	59.180	43.478	0.00	0.00	34.17	3.16
1631	5679	2.210116	GCAGGAGAAACAACGACAAGA	58.790	47.619	0.00	0.00	0.00	3.02
1808	6142	6.954352	ACCTACTCCCTCAGTTTCTAAATT	57.046	37.500	0.00	0.00	36.43	1.82
1851	6186	5.453339	CCAATCAGGACTACACACGGATATT	60.453	44.000	0.00	0.00	41.22	1.28
1947	6295	4.957684	ATATTTAGGAACGGAGGGAGTG	57.042	45.455	0.00	0.00	0.00	3.51
1959	6307	2.393646	GAGGGAGTGCATTCTAGTCCT	58.606	52.381	9.27	6.80	37.71	3.85
2058	6406	6.012337	TGAGGCAATCACCAAAAGGATATA	57.988	37.500	0.00	0.00	31.12	0.86
2075	6423	4.935205	GGATATATGTGTGTGTGTGTGTGT	59.065	41.667	0.00	0.00	0.00	3.72
2110	6468	3.181487	GCGCCTATTGATGACCAAACATT	60.181	43.478	0.00	0.00	38.43	2.71
2430	7767	1.026718	ACAGCACTAGAAATGGCGCC	61.027	55.000	22.73	22.73	0.00	6.53
2653	11675	3.189287	ACAAATGTCTCGGAAATGAGCAC	59.811	43.478	0.00	0.00	35.90	4.40
2826	11849	1.815421	ATGTGGATCGTTCAGCCGC	60.815	57.895	0.00	0.00	0.00	6.53
2827	11850	2.125512	GTGGATCGTTCAGCCGCT	60.126	61.111	0.00	0.00	0.00	5.52
2828	11851	1.141019	GTGGATCGTTCAGCCGCTA	59.859	57.895	0.00	0.00	0.00	4.26
2829	11852	0.249489	GTGGATCGTTCAGCCGCTAT	60.249	55.000	0.00	0.00	0.00	2.97
2830	11853	0.464036	TGGATCGTTCAGCCGCTATT	59.536	50.000	0.00	0.00	0.00	1.73
2831	11854	1.134521	TGGATCGTTCAGCCGCTATTT	60.135	47.619	0.00	0.00	0.00	1.40
2832	11855	1.527311	GGATCGTTCAGCCGCTATTTC	59.473	52.381	0.00	0.00	0.00	2.17
2833	11856	1.190323	GATCGTTCAGCCGCTATTTCG	59.810	52.381	0.00	0.00	0.00	3.46
2876	11903	3.464907	CTGGACATGATGTTGCTCTAGG	58.535	50.000	0.00	0.00	0.00	3.02
3025	12055	0.038310	CCTCTCCTGGTGGTTTTCCC	59.962	60.000	0.00	0.00	39.73	3.97
3139	12169	2.348104	GGGCATTTGACCCGGTTCC	61.348	63.158	0.00	0.00	37.19	3.62
3273	12304	1.818959	CGTTAGTCCCGGTTGGTGGA	61.819	60.000	0.00	0.00	34.77	4.02
3360	12391	3.181510	GGCAGTCGCACTGGTTTATAAAG	60.182	47.826	15.16	0.00	46.01	1.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
271	285	8.596781	ACTAGATCATATATAGGCCGAAACTT	57.403	34.615	0.00	0.00	0.00	2.66
553	568	0.887836	TATGAGGACGTCGATCGGGG	60.888	60.000	16.41	9.95	44.69	5.73
624	895	2.031683	GCAGCAAAGATATACGCGGTTT	59.968	45.455	12.47	0.00	0.00	3.27
889	1245	0.614979	TGAGCACCAGGAGAGGTACC	60.615	60.000	2.73	2.73	40.77	3.34
901	1257	0.109504	GAGACGACTGAGTGAGCACC	60.110	60.000	0.00	0.00	0.00	5.01
908	1264	0.312416	GCAGTGTGAGACGACTGAGT	59.688	55.000	0.00	0.00	41.90	3.41
1161	4968	1.189752	TGCTGCCTCCTGAGTAAGAG	58.810	55.000	0.00	0.00	0.00	2.85
1181	4988	0.037790	GGAGTTGCGTCAGAAGCTCT	60.038	55.000	9.88	7.90	35.28	4.09
1275	5268	2.483876	CCCGTCGATGCAGTCAATTAT	58.516	47.619	0.00	0.00	0.00	1.28
1277	5270	0.744414	CCCCGTCGATGCAGTCAATT	60.744	55.000	0.00	0.00	0.00	2.32
1280	5273	2.994995	ACCCCGTCGATGCAGTCA	60.995	61.111	0.00	0.00	0.00	3.41
1291	5284	1.001760	AGCCTAGACATGACCCCGT	59.998	57.895	0.00	0.00	0.00	5.28
1304	5297	0.324738	CACTGAGTCCCTGGAGCCTA	60.325	60.000	0.00	0.00	0.00	3.93
1358	5354	3.289062	TCAACGTCGGCGAGGACA	61.289	61.111	32.97	14.72	42.00	4.02
1360	5356	4.394078	CGTCAACGTCGGCGAGGA	62.394	66.667	32.97	15.38	42.00	3.71
1380	5376	3.666253	CCCGGCGTTGGGTGAAAC	61.666	66.667	6.01	0.00	44.76	2.78
1397	5393	1.950973	GCTTCTCGTCCTGTCCCTCC	61.951	65.000	0.00	0.00	0.00	4.30
1417	5413	1.806542	GACCAACGTTGCTGATCACAT	59.193	47.619	22.93	0.00	0.00	3.21
1490	5533	8.023128	CCAACGATGATCAAATTTGAACTAAGT	58.977	33.333	23.91	17.42	41.13	2.24
1512	5555	6.013842	AGGTAACAACTACGTACTACCAAC	57.986	41.667	12.19	1.08	41.41	3.77
1578	5625	9.882996	CATACATACATAACAAGTGGCAATTAG	57.117	33.333	0.00	0.00	0.00	1.73
1832	6167	7.313646	CCTATAAATATCCGTGTGTAGTCCTG	58.686	42.308	0.00	0.00	0.00	3.86
1833	6168	6.071503	GCCTATAAATATCCGTGTGTAGTCCT	60.072	42.308	0.00	0.00	0.00	3.85
1842	6177	9.146984	TCTAAAATTCGCCTATAAATATCCGTG	57.853	33.333	0.00	0.00	0.00	4.94
1877	6220	5.762218	AGACTATATGGAGCAAAATGAGTGC	59.238	40.000	0.00	0.00	42.55	4.40
1947	6295	7.954788	ATCTCGAATAAAAGGACTAGAATGC	57.045	36.000	0.00	0.00	0.00	3.56
2058	6406	1.468127	CACACACACACACACACACAT	59.532	47.619	0.00	0.00	0.00	3.21
2075	6423	2.579684	TAGGCGCACACACACACACA	62.580	55.000	10.83	0.00	0.00	3.72
2110	6468	2.375174	GGGGGTCATGCCACATAAGATA	59.625	50.000	10.09	0.00	44.47	1.98
2430	7767	1.108776	CCATGCCAGGGTCATTCTTG	58.891	55.000	0.00	0.00	0.00	3.02
2602	7941	9.950496	ACTAGGCATAATTATCAACTTATCCAG	57.050	33.333	0.00	0.00	0.00	3.86
2826	11849	4.037208	AGCATGGAAAATCAGCCGAAATAG	59.963	41.667	0.00	0.00	0.00	1.73
2827	11850	3.953612	AGCATGGAAAATCAGCCGAAATA	59.046	39.130	0.00	0.00	0.00	1.40
2828	11851	2.762327	AGCATGGAAAATCAGCCGAAAT	59.238	40.909	0.00	0.00	0.00	2.17
2829	11852	2.170166	AGCATGGAAAATCAGCCGAAA	58.830	42.857	0.00	0.00	0.00	3.46
2830	11853	1.838112	AGCATGGAAAATCAGCCGAA	58.162	45.000	0.00	0.00	0.00	4.30
2831	11854	1.745087	GAAGCATGGAAAATCAGCCGA	59.255	47.619	0.00	0.00	0.00	5.54
2832	11855	1.747355	AGAAGCATGGAAAATCAGCCG	59.253	47.619	0.00	0.00	0.00	5.52
2833	11856	2.223433	CGAGAAGCATGGAAAATCAGCC	60.223	50.000	0.00	0.00	0.00	4.85
2834	11857	3.062323	CGAGAAGCATGGAAAATCAGC	57.938	47.619	0.00	0.00	0.00	4.26
2876	11903	2.857748	GTGTGGCACTTGTTTGTAAAGC	59.142	45.455	19.83	0.00	0.00	3.51
3001	12031	0.104934	AACCACCAGGAGAGGACACT	60.105	55.000	0.00	0.00	38.69	3.55
3033	12063	8.887717	CCCATTTTCTACTAGTGAAGAAAGATG	58.112	37.037	16.56	18.82	41.40	2.90
3034	12064	8.049721	CCCCATTTTCTACTAGTGAAGAAAGAT	58.950	37.037	16.56	12.07	41.40	2.40
3035	12065	7.394816	CCCCATTTTCTACTAGTGAAGAAAGA	58.605	38.462	16.56	10.82	41.40	2.52
3036	12066	6.094186	GCCCCATTTTCTACTAGTGAAGAAAG	59.906	42.308	16.56	9.36	41.40	2.62
3039	12069	4.534500	TGCCCCATTTTCTACTAGTGAAGA	59.466	41.667	5.39	0.00	0.00	2.87
3040	12070	4.843728	TGCCCCATTTTCTACTAGTGAAG	58.156	43.478	5.39	0.00	0.00	3.02
3041	12071	4.919774	TGCCCCATTTTCTACTAGTGAA	57.080	40.909	5.39	4.72	0.00	3.18
3056	12086	3.671410	CCCTGGACCATTGCCCCA	61.671	66.667	0.00	0.00	0.00	4.96
3170	12201	1.189524	AGACGAACCGGGACCAATGA	61.190	55.000	6.32	0.00	0.00	2.57
3273	12304	0.898326	GCCTTTGGTCCCGGTTCATT	60.898	55.000	0.00	0.00	0.00	2.57
3312	12343	1.520666	CGGCGAGGTGGGACTAAAT	59.479	57.895	0.00	0.00	0.00	1.40
3601	12658	6.222389	TGTTGAATTTTGGCAAACTAGATGG	58.778	36.000	13.10	0.00	0.00	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.