Multiple sequence alignment - TraesCS2A01G051400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G051400 chr2A 100.000 3138 0 0 1 3138 20163799 20166936 0.000000e+00 5795
1 TraesCS2A01G051400 chr2A 79.665 836 142 16 1305 2138 27503027 27502218 7.550000e-161 577
2 TraesCS2A01G051400 chr2D 95.771 2885 83 11 278 3138 18747454 18750323 0.000000e+00 4615
3 TraesCS2A01G051400 chr2D 79.067 836 147 18 1305 2138 25026983 25026174 1.650000e-152 549
4 TraesCS2A01G051400 chr2D 89.437 284 30 0 1 284 489023639 489023356 2.980000e-95 359
5 TraesCS2A01G051400 chr2D 91.304 115 8 2 509 622 18746371 18746484 4.190000e-34 156
6 TraesCS2A01G051400 chr2B 87.083 929 69 19 1490 2407 30562229 30563117 0.000000e+00 1003
7 TraesCS2A01G051400 chr2B 90.050 402 15 13 1067 1467 30561857 30562234 6.040000e-137 497
8 TraesCS2A01G051400 chr2B 89.085 284 31 0 1 284 28557793 28557510 1.380000e-93 353
9 TraesCS2A01G051400 chr2B 88.288 111 12 1 513 622 30561207 30561317 7.060000e-27 132
10 TraesCS2A01G051400 chr1B 76.601 859 172 21 1290 2138 18578907 18579746 2.220000e-121 446
11 TraesCS2A01G051400 chr4A 92.527 281 21 0 1 281 614423981 614423701 1.360000e-108 403
12 TraesCS2A01G051400 chr3A 90.526 285 24 1 1 285 177108929 177108648 1.060000e-99 374
13 TraesCS2A01G051400 chr5D 90.391 281 27 0 1 281 491335922 491336202 1.370000e-98 370
14 TraesCS2A01G051400 chr5B 89.547 287 28 2 1 285 580853417 580853131 2.300000e-96 363
15 TraesCS2A01G051400 chr5B 74.632 272 55 7 1670 1940 470200561 470200303 1.190000e-19 108
16 TraesCS2A01G051400 chr1A 76.037 747 152 17 1401 2138 14549882 14550610 2.300000e-96 363
17 TraesCS2A01G051400 chr4B 89.399 283 30 0 1 283 92021484 92021766 1.070000e-94 357
18 TraesCS2A01G051400 chrUn 89.324 281 30 0 1 281 42685147 42685427 1.380000e-93 353
19 TraesCS2A01G051400 chr6D 88.889 288 28 1 1 284 20476271 20476558 4.980000e-93 351


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G051400 chr2A 20163799 20166936 3137 False 5795.0 5795 100.000000 1 3138 1 chr2A.!!$F1 3137
1 TraesCS2A01G051400 chr2A 27502218 27503027 809 True 577.0 577 79.665000 1305 2138 1 chr2A.!!$R1 833
2 TraesCS2A01G051400 chr2D 18746371 18750323 3952 False 2385.5 4615 93.537500 278 3138 2 chr2D.!!$F1 2860
3 TraesCS2A01G051400 chr2D 25026174 25026983 809 True 549.0 549 79.067000 1305 2138 1 chr2D.!!$R1 833
4 TraesCS2A01G051400 chr2B 30561207 30563117 1910 False 544.0 1003 88.473667 513 2407 3 chr2B.!!$F1 1894
5 TraesCS2A01G051400 chr1B 18578907 18579746 839 False 446.0 446 76.601000 1290 2138 1 chr1B.!!$F1 848
6 TraesCS2A01G051400 chr1A 14549882 14550610 728 False 363.0 363 76.037000 1401 2138 1 chr1A.!!$F1 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 564 0.035439 GATTCCTCTGCCGTCCCAAA 60.035 55.0 0.00 0.0 0.00 3.28 F
652 949 0.535553 AGTCGACGGATCTAGCTCCC 60.536 60.0 10.46 0.0 31.04 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 3298 0.240145 CGCTGAAGTAGACGGTGTCA 59.760 55.0 0.0 0.0 34.60 3.58 R
2310 3670 2.423538 GCATGGTTCACCTTATCACCAC 59.576 50.0 0.0 0.0 42.14 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.009115 CCACAAACTCAAATTACAGGTACC 57.991 41.667 2.73 2.73 0.00 3.34
24 25 5.533154 CCACAAACTCAAATTACAGGTACCA 59.467 40.000 15.94 0.00 0.00 3.25
25 26 6.039941 CCACAAACTCAAATTACAGGTACCAA 59.960 38.462 15.94 0.00 0.00 3.67
26 27 7.138736 CACAAACTCAAATTACAGGTACCAAG 58.861 38.462 15.94 8.83 0.00 3.61
27 28 6.264518 ACAAACTCAAATTACAGGTACCAAGG 59.735 38.462 15.94 5.66 0.00 3.61
28 29 5.578157 ACTCAAATTACAGGTACCAAGGT 57.422 39.130 15.94 11.64 0.00 3.50
29 30 6.691255 ACTCAAATTACAGGTACCAAGGTA 57.309 37.500 15.94 10.60 0.00 3.08
30 31 7.081857 ACTCAAATTACAGGTACCAAGGTAA 57.918 36.000 15.94 18.28 31.86 2.85
31 32 7.519927 ACTCAAATTACAGGTACCAAGGTAAA 58.480 34.615 20.60 9.15 31.86 2.01
32 33 8.000127 ACTCAAATTACAGGTACCAAGGTAAAA 59.000 33.333 20.60 7.94 31.86 1.52
33 34 8.943594 TCAAATTACAGGTACCAAGGTAAAAT 57.056 30.769 20.60 13.37 31.86 1.82
34 35 9.369672 TCAAATTACAGGTACCAAGGTAAAATT 57.630 29.630 20.60 16.74 31.86 1.82
35 36 9.990360 CAAATTACAGGTACCAAGGTAAAATTT 57.010 29.630 20.60 16.77 31.86 1.82
40 41 8.943594 ACAGGTACCAAGGTAAAATTTAATGA 57.056 30.769 15.94 0.00 31.86 2.57
41 42 9.020731 ACAGGTACCAAGGTAAAATTTAATGAG 57.979 33.333 15.94 0.00 31.86 2.90
42 43 9.020731 CAGGTACCAAGGTAAAATTTAATGAGT 57.979 33.333 15.94 0.00 31.86 3.41
43 44 9.020731 AGGTACCAAGGTAAAATTTAATGAGTG 57.979 33.333 15.94 0.00 31.86 3.51
44 45 7.758076 GGTACCAAGGTAAAATTTAATGAGTGC 59.242 37.037 7.15 0.00 31.86 4.40
45 46 7.539034 ACCAAGGTAAAATTTAATGAGTGCT 57.461 32.000 0.00 0.00 0.00 4.40
46 47 7.962441 ACCAAGGTAAAATTTAATGAGTGCTT 58.038 30.769 0.00 0.00 0.00 3.91
47 48 8.428852 ACCAAGGTAAAATTTAATGAGTGCTTT 58.571 29.630 0.00 0.00 0.00 3.51
48 49 8.711457 CCAAGGTAAAATTTAATGAGTGCTTTG 58.289 33.333 0.00 0.00 0.00 2.77
49 50 8.711457 CAAGGTAAAATTTAATGAGTGCTTTGG 58.289 33.333 0.00 0.00 0.00 3.28
50 51 8.189119 AGGTAAAATTTAATGAGTGCTTTGGA 57.811 30.769 0.00 0.00 0.00 3.53
51 52 8.646900 AGGTAAAATTTAATGAGTGCTTTGGAA 58.353 29.630 0.00 0.00 0.00 3.53
52 53 8.925700 GGTAAAATTTAATGAGTGCTTTGGAAG 58.074 33.333 0.00 0.00 0.00 3.46
75 76 6.368213 AGCCGACTTCTATTTTTGTTAAACG 58.632 36.000 0.00 0.00 0.00 3.60
76 77 5.566395 GCCGACTTCTATTTTTGTTAAACGG 59.434 40.000 0.00 0.00 37.65 4.44
77 78 6.081693 CCGACTTCTATTTTTGTTAAACGGG 58.918 40.000 0.00 0.00 0.00 5.28
78 79 6.073112 CCGACTTCTATTTTTGTTAAACGGGA 60.073 38.462 0.00 0.00 0.00 5.14
79 80 7.361457 CCGACTTCTATTTTTGTTAAACGGGAT 60.361 37.037 0.00 0.00 0.00 3.85
80 81 7.691050 CGACTTCTATTTTTGTTAAACGGGATC 59.309 37.037 0.00 0.00 0.00 3.36
81 82 8.398878 ACTTCTATTTTTGTTAAACGGGATCA 57.601 30.769 0.00 0.00 0.00 2.92
82 83 9.020731 ACTTCTATTTTTGTTAAACGGGATCAT 57.979 29.630 0.00 0.00 0.00 2.45
83 84 9.855021 CTTCTATTTTTGTTAAACGGGATCATT 57.145 29.630 0.00 0.00 0.00 2.57
90 91 9.522804 TTTTGTTAAACGGGATCATTAATATGC 57.477 29.630 0.00 0.00 0.00 3.14
91 92 8.458573 TTGTTAAACGGGATCATTAATATGCT 57.541 30.769 0.00 0.00 0.00 3.79
92 93 8.458573 TGTTAAACGGGATCATTAATATGCTT 57.541 30.769 0.00 0.00 0.00 3.91
93 94 8.349245 TGTTAAACGGGATCATTAATATGCTTG 58.651 33.333 0.00 0.00 0.00 4.01
94 95 5.376854 AACGGGATCATTAATATGCTTGC 57.623 39.130 0.00 0.00 0.00 4.01
95 96 4.397420 ACGGGATCATTAATATGCTTGCA 58.603 39.130 0.00 0.00 0.00 4.08
96 97 5.012239 ACGGGATCATTAATATGCTTGCAT 58.988 37.500 12.88 12.88 0.00 3.96
97 98 5.106038 ACGGGATCATTAATATGCTTGCATG 60.106 40.000 17.26 2.18 0.00 4.06
98 99 5.107133 GGGATCATTAATATGCTTGCATGC 58.893 41.667 17.19 17.19 0.00 4.06
117 118 5.838529 CATGCATGCAATAAAGGAATGAGA 58.161 37.500 26.68 0.00 0.00 3.27
118 119 5.918426 TGCATGCAATAAAGGAATGAGAA 57.082 34.783 20.30 0.00 0.00 2.87
119 120 6.474140 TGCATGCAATAAAGGAATGAGAAT 57.526 33.333 20.30 0.00 0.00 2.40
120 121 6.277605 TGCATGCAATAAAGGAATGAGAATG 58.722 36.000 20.30 0.00 0.00 2.67
121 122 6.097129 TGCATGCAATAAAGGAATGAGAATGA 59.903 34.615 20.30 0.00 0.00 2.57
122 123 6.982141 GCATGCAATAAAGGAATGAGAATGAA 59.018 34.615 14.21 0.00 0.00 2.57
123 124 7.169308 GCATGCAATAAAGGAATGAGAATGAAG 59.831 37.037 14.21 0.00 0.00 3.02
124 125 7.707624 TGCAATAAAGGAATGAGAATGAAGT 57.292 32.000 0.00 0.00 0.00 3.01
125 126 8.806429 TGCAATAAAGGAATGAGAATGAAGTA 57.194 30.769 0.00 0.00 0.00 2.24
126 127 8.896744 TGCAATAAAGGAATGAGAATGAAGTAG 58.103 33.333 0.00 0.00 0.00 2.57
127 128 7.859875 GCAATAAAGGAATGAGAATGAAGTAGC 59.140 37.037 0.00 0.00 0.00 3.58
128 129 8.896744 CAATAAAGGAATGAGAATGAAGTAGCA 58.103 33.333 0.00 0.00 0.00 3.49
129 130 6.749923 AAAGGAATGAGAATGAAGTAGCAC 57.250 37.500 0.00 0.00 0.00 4.40
130 131 5.426689 AGGAATGAGAATGAAGTAGCACA 57.573 39.130 0.00 0.00 0.00 4.57
131 132 5.181748 AGGAATGAGAATGAAGTAGCACAC 58.818 41.667 0.00 0.00 0.00 3.82
132 133 5.046014 AGGAATGAGAATGAAGTAGCACACT 60.046 40.000 0.00 0.00 40.05 3.55
133 134 5.064452 GGAATGAGAATGAAGTAGCACACTG 59.936 44.000 0.00 0.00 37.63 3.66
134 135 4.607293 TGAGAATGAAGTAGCACACTGT 57.393 40.909 0.00 0.00 37.63 3.55
135 136 4.560128 TGAGAATGAAGTAGCACACTGTC 58.440 43.478 0.00 0.00 37.63 3.51
136 137 4.039124 TGAGAATGAAGTAGCACACTGTCA 59.961 41.667 0.00 0.00 37.63 3.58
137 138 5.157940 AGAATGAAGTAGCACACTGTCAT 57.842 39.130 0.00 0.00 37.63 3.06
138 139 5.555017 AGAATGAAGTAGCACACTGTCATT 58.445 37.500 18.02 18.02 41.93 2.57
139 140 6.701340 AGAATGAAGTAGCACACTGTCATTA 58.299 36.000 18.01 0.00 40.78 1.90
140 141 7.334090 AGAATGAAGTAGCACACTGTCATTAT 58.666 34.615 18.01 15.20 40.78 1.28
141 142 6.915544 ATGAAGTAGCACACTGTCATTATG 57.084 37.500 0.00 0.00 37.63 1.90
142 143 6.036577 TGAAGTAGCACACTGTCATTATGA 57.963 37.500 0.00 0.00 37.63 2.15
143 144 6.643388 TGAAGTAGCACACTGTCATTATGAT 58.357 36.000 0.00 0.00 37.63 2.45
144 145 7.105588 TGAAGTAGCACACTGTCATTATGATT 58.894 34.615 0.00 0.00 37.63 2.57
145 146 8.257306 TGAAGTAGCACACTGTCATTATGATTA 58.743 33.333 0.00 0.00 37.63 1.75
146 147 8.425577 AAGTAGCACACTGTCATTATGATTAC 57.574 34.615 0.00 0.00 37.63 1.89
147 148 7.555965 AGTAGCACACTGTCATTATGATTACA 58.444 34.615 0.00 0.00 35.62 2.41
148 149 8.206867 AGTAGCACACTGTCATTATGATTACAT 58.793 33.333 0.00 0.00 35.62 2.29
149 150 7.255491 AGCACACTGTCATTATGATTACATG 57.745 36.000 0.00 0.00 37.87 3.21
150 151 5.911280 GCACACTGTCATTATGATTACATGC 59.089 40.000 0.00 3.40 37.87 4.06
151 152 6.458615 GCACACTGTCATTATGATTACATGCA 60.459 38.462 14.42 0.00 37.87 3.96
152 153 7.645402 CACACTGTCATTATGATTACATGCAT 58.355 34.615 0.00 0.00 37.87 3.96
153 154 7.589954 CACACTGTCATTATGATTACATGCATG 59.410 37.037 25.09 25.09 37.87 4.06
154 155 6.581166 CACTGTCATTATGATTACATGCATGC 59.419 38.462 26.53 11.82 37.87 4.06
155 156 6.263617 ACTGTCATTATGATTACATGCATGCA 59.736 34.615 26.53 25.04 37.87 3.96
156 157 6.674066 TGTCATTATGATTACATGCATGCAG 58.326 36.000 26.69 19.15 37.87 4.41
157 158 6.090783 GTCATTATGATTACATGCATGCAGG 58.909 40.000 29.33 29.33 37.87 4.85
158 159 5.771165 TCATTATGATTACATGCATGCAGGT 59.229 36.000 36.47 36.47 43.60 4.00
159 160 6.941436 TCATTATGATTACATGCATGCAGGTA 59.059 34.615 34.37 34.37 41.39 3.08
160 161 7.612633 TCATTATGATTACATGCATGCAGGTAT 59.387 33.333 36.99 27.71 41.75 2.73
161 162 7.764141 TTATGATTACATGCATGCAGGTATT 57.236 32.000 36.99 33.02 41.75 1.89
162 163 8.860780 TTATGATTACATGCATGCAGGTATTA 57.139 30.769 36.99 26.88 41.75 0.98
163 164 7.764141 ATGATTACATGCATGCAGGTATTAA 57.236 32.000 36.99 28.48 41.75 1.40
164 165 7.579761 TGATTACATGCATGCAGGTATTAAA 57.420 32.000 36.99 27.35 41.75 1.52
165 166 8.005192 TGATTACATGCATGCAGGTATTAAAA 57.995 30.769 36.99 27.03 41.75 1.52
166 167 8.473219 TGATTACATGCATGCAGGTATTAAAAA 58.527 29.630 36.99 26.40 41.75 1.94
189 190 9.797556 AAAAAGTTGGTAGTATGAGAAAACAAC 57.202 29.630 0.00 0.00 37.73 3.32
190 191 8.514330 AAAGTTGGTAGTATGAGAAAACAACA 57.486 30.769 0.00 0.00 39.36 3.33
191 192 8.691661 AAGTTGGTAGTATGAGAAAACAACAT 57.308 30.769 0.00 0.00 39.36 2.71
192 193 8.691661 AGTTGGTAGTATGAGAAAACAACATT 57.308 30.769 0.00 0.00 39.36 2.71
193 194 9.787435 AGTTGGTAGTATGAGAAAACAACATTA 57.213 29.630 0.00 0.00 39.36 1.90
212 213 6.785191 ACATTAATGTTTGCCTCGATTACTG 58.215 36.000 15.47 0.00 37.90 2.74
213 214 6.374333 ACATTAATGTTTGCCTCGATTACTGT 59.626 34.615 15.47 0.00 37.90 3.55
214 215 6.811253 TTAATGTTTGCCTCGATTACTGTT 57.189 33.333 0.00 0.00 0.00 3.16
215 216 7.908827 TTAATGTTTGCCTCGATTACTGTTA 57.091 32.000 0.00 0.00 0.00 2.41
216 217 6.422776 AATGTTTGCCTCGATTACTGTTAG 57.577 37.500 0.00 0.00 0.00 2.34
217 218 4.890088 TGTTTGCCTCGATTACTGTTAGT 58.110 39.130 0.00 0.00 0.00 2.24
218 219 4.688879 TGTTTGCCTCGATTACTGTTAGTG 59.311 41.667 0.00 0.00 0.00 2.74
219 220 3.520290 TGCCTCGATTACTGTTAGTGG 57.480 47.619 0.00 0.00 0.00 4.00
220 221 2.202566 GCCTCGATTACTGTTAGTGGC 58.797 52.381 0.00 0.00 34.94 5.01
221 222 2.822764 CCTCGATTACTGTTAGTGGCC 58.177 52.381 0.00 0.00 0.00 5.36
222 223 2.431057 CCTCGATTACTGTTAGTGGCCT 59.569 50.000 3.32 0.00 0.00 5.19
223 224 3.118738 CCTCGATTACTGTTAGTGGCCTT 60.119 47.826 3.32 0.00 0.00 4.35
224 225 3.857052 TCGATTACTGTTAGTGGCCTTG 58.143 45.455 3.32 0.00 0.00 3.61
225 226 3.259876 TCGATTACTGTTAGTGGCCTTGT 59.740 43.478 3.32 0.00 0.00 3.16
226 227 4.463539 TCGATTACTGTTAGTGGCCTTGTA 59.536 41.667 3.32 0.00 0.00 2.41
227 228 5.128171 TCGATTACTGTTAGTGGCCTTGTAT 59.872 40.000 3.32 0.00 0.00 2.29
228 229 6.321945 TCGATTACTGTTAGTGGCCTTGTATA 59.678 38.462 3.32 0.00 0.00 1.47
229 230 6.641314 CGATTACTGTTAGTGGCCTTGTATAG 59.359 42.308 3.32 0.00 0.00 1.31
230 231 7.469594 CGATTACTGTTAGTGGCCTTGTATAGA 60.470 40.741 3.32 0.00 0.00 1.98
231 232 7.670605 TTACTGTTAGTGGCCTTGTATAGAT 57.329 36.000 3.32 0.00 0.00 1.98
232 233 5.918608 ACTGTTAGTGGCCTTGTATAGATG 58.081 41.667 3.32 0.00 0.00 2.90
233 234 4.703897 TGTTAGTGGCCTTGTATAGATGC 58.296 43.478 3.32 0.00 0.00 3.91
234 235 4.163268 TGTTAGTGGCCTTGTATAGATGCA 59.837 41.667 3.32 0.00 0.00 3.96
235 236 3.931907 AGTGGCCTTGTATAGATGCAA 57.068 42.857 3.32 0.00 0.00 4.08
236 237 4.235079 AGTGGCCTTGTATAGATGCAAA 57.765 40.909 3.32 0.00 32.12 3.68
237 238 3.947834 AGTGGCCTTGTATAGATGCAAAC 59.052 43.478 3.32 0.00 32.12 2.93
238 239 3.947834 GTGGCCTTGTATAGATGCAAACT 59.052 43.478 3.32 0.00 32.12 2.66
239 240 3.947196 TGGCCTTGTATAGATGCAAACTG 59.053 43.478 3.32 0.00 32.12 3.16
240 241 3.947834 GGCCTTGTATAGATGCAAACTGT 59.052 43.478 0.00 0.00 32.12 3.55
241 242 5.123227 GGCCTTGTATAGATGCAAACTGTA 58.877 41.667 0.00 0.00 32.12 2.74
242 243 5.765182 GGCCTTGTATAGATGCAAACTGTAT 59.235 40.000 0.00 0.00 32.12 2.29
243 244 6.263168 GGCCTTGTATAGATGCAAACTGTATT 59.737 38.462 0.00 0.00 32.12 1.89
244 245 7.201821 GGCCTTGTATAGATGCAAACTGTATTT 60.202 37.037 0.00 0.00 32.12 1.40
245 246 8.190784 GCCTTGTATAGATGCAAACTGTATTTT 58.809 33.333 0.00 0.00 32.12 1.82
254 255 8.246180 AGATGCAAACTGTATTTTTGATAGTGG 58.754 33.333 0.00 0.00 36.24 4.00
255 256 6.155827 TGCAAACTGTATTTTTGATAGTGGC 58.844 36.000 0.00 0.00 36.24 5.01
256 257 5.576774 GCAAACTGTATTTTTGATAGTGGCC 59.423 40.000 0.00 0.00 36.24 5.36
257 258 6.572314 GCAAACTGTATTTTTGATAGTGGCCT 60.572 38.462 3.32 0.00 36.24 5.19
258 259 7.378181 CAAACTGTATTTTTGATAGTGGCCTT 58.622 34.615 3.32 0.00 36.24 4.35
259 260 6.515272 ACTGTATTTTTGATAGTGGCCTTG 57.485 37.500 3.32 0.00 0.00 3.61
260 261 6.010219 ACTGTATTTTTGATAGTGGCCTTGT 58.990 36.000 3.32 0.00 0.00 3.16
261 262 7.172342 ACTGTATTTTTGATAGTGGCCTTGTA 58.828 34.615 3.32 0.00 0.00 2.41
262 263 7.834181 ACTGTATTTTTGATAGTGGCCTTGTAT 59.166 33.333 3.32 0.00 0.00 2.29
263 264 9.337396 CTGTATTTTTGATAGTGGCCTTGTATA 57.663 33.333 3.32 0.00 0.00 1.47
264 265 9.688091 TGTATTTTTGATAGTGGCCTTGTATAA 57.312 29.630 3.32 0.00 0.00 0.98
278 279 5.234466 CTTGTATAAGGGAATGGAGGGAG 57.766 47.826 0.00 0.00 0.00 4.30
279 280 4.295905 TGTATAAGGGAATGGAGGGAGT 57.704 45.455 0.00 0.00 0.00 3.85
280 281 5.427857 TGTATAAGGGAATGGAGGGAGTA 57.572 43.478 0.00 0.00 0.00 2.59
281 282 5.152934 TGTATAAGGGAATGGAGGGAGTAC 58.847 45.833 0.00 0.00 0.00 2.73
282 283 2.972153 AAGGGAATGGAGGGAGTACT 57.028 50.000 0.00 0.00 0.00 2.73
283 284 2.972153 AGGGAATGGAGGGAGTACTT 57.028 50.000 0.00 0.00 0.00 2.24
284 285 2.765502 AGGGAATGGAGGGAGTACTTC 58.234 52.381 0.00 0.00 0.00 3.01
285 286 1.413077 GGGAATGGAGGGAGTACTTCG 59.587 57.143 0.00 0.00 0.00 3.79
286 287 1.202545 GGAATGGAGGGAGTACTTCGC 60.203 57.143 0.00 0.00 38.95 4.70
287 288 0.831307 AATGGAGGGAGTACTTCGCC 59.169 55.000 0.00 4.97 39.46 5.54
288 289 0.325296 ATGGAGGGAGTACTTCGCCA 60.325 55.000 19.17 19.17 39.46 5.69
289 290 0.325296 TGGAGGGAGTACTTCGCCAT 60.325 55.000 15.08 2.76 39.46 4.40
290 291 0.831307 GGAGGGAGTACTTCGCCATT 59.169 55.000 12.62 0.00 39.46 3.16
291 292 1.473434 GGAGGGAGTACTTCGCCATTG 60.473 57.143 12.62 0.00 39.46 2.82
292 293 0.107654 AGGGAGTACTTCGCCATTGC 60.108 55.000 0.00 0.00 39.46 3.56
293 294 1.095807 GGGAGTACTTCGCCATTGCC 61.096 60.000 0.00 0.00 37.76 4.52
294 295 0.107654 GGAGTACTTCGCCATTGCCT 60.108 55.000 0.00 0.00 36.03 4.75
295 296 1.009829 GAGTACTTCGCCATTGCCTG 58.990 55.000 0.00 0.00 0.00 4.85
296 297 0.613260 AGTACTTCGCCATTGCCTGA 59.387 50.000 0.00 0.00 0.00 3.86
297 298 1.003118 AGTACTTCGCCATTGCCTGAA 59.997 47.619 0.00 0.00 0.00 3.02
298 299 1.810151 GTACTTCGCCATTGCCTGAAA 59.190 47.619 0.00 0.00 0.00 2.69
299 300 0.883833 ACTTCGCCATTGCCTGAAAG 59.116 50.000 0.00 0.00 0.00 2.62
300 301 0.457337 CTTCGCCATTGCCTGAAAGC 60.457 55.000 0.00 0.00 0.00 3.51
301 302 1.177895 TTCGCCATTGCCTGAAAGCA 61.178 50.000 0.00 0.00 42.17 3.91
302 303 1.153901 CGCCATTGCCTGAAAGCAG 60.154 57.895 0.00 0.00 45.13 4.24
303 304 1.447314 GCCATTGCCTGAAAGCAGC 60.447 57.895 0.00 0.00 45.13 5.25
304 305 1.969085 CCATTGCCTGAAAGCAGCA 59.031 52.632 0.00 0.00 45.13 4.41
305 306 0.319083 CCATTGCCTGAAAGCAGCAA 59.681 50.000 0.00 0.00 45.13 3.91
306 307 1.671850 CCATTGCCTGAAAGCAGCAAG 60.672 52.381 0.00 0.00 45.13 4.01
307 308 1.000506 CATTGCCTGAAAGCAGCAAGT 59.999 47.619 0.00 0.00 45.13 3.16
308 309 1.979855 TTGCCTGAAAGCAGCAAGTA 58.020 45.000 0.00 0.00 45.13 2.24
309 310 1.527034 TGCCTGAAAGCAGCAAGTAG 58.473 50.000 0.00 0.00 40.91 2.57
310 311 1.072173 TGCCTGAAAGCAGCAAGTAGA 59.928 47.619 0.00 0.00 40.91 2.59
311 312 2.154462 GCCTGAAAGCAGCAAGTAGAA 58.846 47.619 0.00 0.00 40.91 2.10
312 313 2.095516 GCCTGAAAGCAGCAAGTAGAAC 60.096 50.000 0.00 0.00 40.91 3.01
313 314 2.485814 CCTGAAAGCAGCAAGTAGAACC 59.514 50.000 0.00 0.00 40.91 3.62
314 315 3.141398 CTGAAAGCAGCAAGTAGAACCA 58.859 45.455 0.00 0.00 34.95 3.67
315 316 3.550820 TGAAAGCAGCAAGTAGAACCAA 58.449 40.909 0.00 0.00 0.00 3.67
316 317 3.951037 TGAAAGCAGCAAGTAGAACCAAA 59.049 39.130 0.00 0.00 0.00 3.28
317 318 4.584325 TGAAAGCAGCAAGTAGAACCAAAT 59.416 37.500 0.00 0.00 0.00 2.32
318 319 5.068987 TGAAAGCAGCAAGTAGAACCAAATT 59.931 36.000 0.00 0.00 0.00 1.82
319 320 6.264292 TGAAAGCAGCAAGTAGAACCAAATTA 59.736 34.615 0.00 0.00 0.00 1.40
320 321 6.648879 AAGCAGCAAGTAGAACCAAATTAA 57.351 33.333 0.00 0.00 0.00 1.40
321 322 6.840780 AGCAGCAAGTAGAACCAAATTAAT 57.159 33.333 0.00 0.00 0.00 1.40
322 323 7.938140 AGCAGCAAGTAGAACCAAATTAATA 57.062 32.000 0.00 0.00 0.00 0.98
323 324 8.348285 AGCAGCAAGTAGAACCAAATTAATAA 57.652 30.769 0.00 0.00 0.00 1.40
324 325 8.802267 AGCAGCAAGTAGAACCAAATTAATAAA 58.198 29.630 0.00 0.00 0.00 1.40
325 326 9.586435 GCAGCAAGTAGAACCAAATTAATAAAT 57.414 29.630 0.00 0.00 0.00 1.40
356 357 9.770097 ACTTAAAGTCAGTCATATACATGGATG 57.230 33.333 0.00 0.00 32.61 3.51
357 358 9.770097 CTTAAAGTCAGTCATATACATGGATGT 57.230 33.333 0.00 0.00 44.48 3.06
358 359 9.764363 TTAAAGTCAGTCATATACATGGATGTC 57.236 33.333 0.00 0.00 41.97 3.06
359 360 7.609097 AAGTCAGTCATATACATGGATGTCT 57.391 36.000 0.00 0.00 41.97 3.41
360 361 8.712228 AAGTCAGTCATATACATGGATGTCTA 57.288 34.615 0.00 0.00 41.97 2.59
361 362 8.347004 AGTCAGTCATATACATGGATGTCTAG 57.653 38.462 0.00 0.00 41.97 2.43
362 363 8.166726 AGTCAGTCATATACATGGATGTCTAGA 58.833 37.037 0.00 0.00 41.97 2.43
363 364 8.965819 GTCAGTCATATACATGGATGTCTAGAT 58.034 37.037 0.00 0.00 41.97 1.98
364 365 9.183368 TCAGTCATATACATGGATGTCTAGATC 57.817 37.037 0.00 0.00 41.97 2.75
365 366 9.187996 CAGTCATATACATGGATGTCTAGATCT 57.812 37.037 0.00 0.00 41.97 2.75
366 367 9.187996 AGTCATATACATGGATGTCTAGATCTG 57.812 37.037 5.18 0.00 41.97 2.90
367 368 8.965819 GTCATATACATGGATGTCTAGATCTGT 58.034 37.037 5.18 0.00 41.97 3.41
368 369 8.964772 TCATATACATGGATGTCTAGATCTGTG 58.035 37.037 5.18 0.00 41.97 3.66
369 370 4.333913 ACATGGATGTCTAGATCTGTGC 57.666 45.455 5.18 0.00 35.87 4.57
370 371 3.708121 ACATGGATGTCTAGATCTGTGCA 59.292 43.478 5.18 1.40 35.87 4.57
371 372 4.347292 ACATGGATGTCTAGATCTGTGCAT 59.653 41.667 5.18 6.47 35.87 3.96
372 373 4.332428 TGGATGTCTAGATCTGTGCATG 57.668 45.455 5.18 0.00 0.00 4.06
373 374 3.070590 TGGATGTCTAGATCTGTGCATGG 59.929 47.826 5.18 0.00 0.00 3.66
374 375 3.556633 GGATGTCTAGATCTGTGCATGGG 60.557 52.174 5.18 0.00 0.00 4.00
375 376 2.470990 TGTCTAGATCTGTGCATGGGT 58.529 47.619 5.18 0.00 0.00 4.51
376 377 2.432146 TGTCTAGATCTGTGCATGGGTC 59.568 50.000 5.18 0.00 0.00 4.46
377 378 2.697751 GTCTAGATCTGTGCATGGGTCT 59.302 50.000 5.18 9.13 0.00 3.85
378 379 2.697229 TCTAGATCTGTGCATGGGTCTG 59.303 50.000 5.18 5.56 0.00 3.51
379 380 0.107312 AGATCTGTGCATGGGTCTGC 60.107 55.000 0.00 0.00 42.62 4.26
380 381 0.107312 GATCTGTGCATGGGTCTGCT 60.107 55.000 0.00 0.00 42.75 4.24
381 382 0.393944 ATCTGTGCATGGGTCTGCTG 60.394 55.000 0.00 0.00 42.75 4.41
382 383 1.002990 CTGTGCATGGGTCTGCTGA 60.003 57.895 0.00 0.00 42.75 4.26
383 384 0.607217 CTGTGCATGGGTCTGCTGAA 60.607 55.000 0.00 0.00 42.75 3.02
384 385 0.178995 TGTGCATGGGTCTGCTGAAA 60.179 50.000 0.00 0.00 42.75 2.69
385 386 0.524862 GTGCATGGGTCTGCTGAAAG 59.475 55.000 0.00 0.00 42.75 2.62
402 403 5.650543 CTGAAAGCCTTAAACACAAACAGT 58.349 37.500 0.00 0.00 0.00 3.55
426 427 9.301897 AGTGAAAATAAATTTAACTGAGAGGCT 57.698 29.630 1.21 0.00 40.60 4.58
427 428 9.346725 GTGAAAATAAATTTAACTGAGAGGCTG 57.653 33.333 1.21 0.00 30.64 4.85
428 429 9.295825 TGAAAATAAATTTAACTGAGAGGCTGA 57.704 29.630 1.21 0.00 0.00 4.26
431 432 8.814038 AATAAATTTAACTGAGAGGCTGATGT 57.186 30.769 1.21 0.00 0.00 3.06
432 433 9.905713 AATAAATTTAACTGAGAGGCTGATGTA 57.094 29.630 1.21 0.00 0.00 2.29
435 436 8.894768 AATTTAACTGAGAGGCTGATGTATAC 57.105 34.615 0.00 0.00 0.00 1.47
436 437 4.576216 AACTGAGAGGCTGATGTATACG 57.424 45.455 0.00 0.00 0.00 3.06
437 438 3.821748 ACTGAGAGGCTGATGTATACGA 58.178 45.455 0.00 0.00 0.00 3.43
438 439 3.566322 ACTGAGAGGCTGATGTATACGAC 59.434 47.826 0.00 0.00 0.00 4.34
439 440 3.551846 TGAGAGGCTGATGTATACGACA 58.448 45.455 0.00 0.39 43.97 4.35
440 441 3.951680 TGAGAGGCTGATGTATACGACAA 59.048 43.478 0.00 0.00 42.78 3.18
441 442 4.202020 TGAGAGGCTGATGTATACGACAAC 60.202 45.833 0.00 0.00 42.78 3.32
442 443 3.699538 AGAGGCTGATGTATACGACAACA 59.300 43.478 0.00 0.00 42.78 3.33
443 444 4.159693 AGAGGCTGATGTATACGACAACAA 59.840 41.667 0.00 0.00 42.78 2.83
444 445 4.827692 AGGCTGATGTATACGACAACAAA 58.172 39.130 0.00 0.00 42.78 2.83
445 446 5.242434 AGGCTGATGTATACGACAACAAAA 58.758 37.500 0.00 0.00 42.78 2.44
446 447 5.703592 AGGCTGATGTATACGACAACAAAAA 59.296 36.000 0.00 0.00 42.78 1.94
447 448 6.374333 AGGCTGATGTATACGACAACAAAAAT 59.626 34.615 0.00 0.00 42.78 1.82
448 449 6.687105 GGCTGATGTATACGACAACAAAAATC 59.313 38.462 0.00 0.00 42.78 2.17
449 450 7.414098 GGCTGATGTATACGACAACAAAAATCT 60.414 37.037 0.00 0.00 42.78 2.40
450 451 7.426456 GCTGATGTATACGACAACAAAAATCTG 59.574 37.037 0.00 0.00 42.78 2.90
451 452 8.317891 TGATGTATACGACAACAAAAATCTGT 57.682 30.769 0.00 0.00 42.78 3.41
452 453 9.425577 TGATGTATACGACAACAAAAATCTGTA 57.574 29.630 0.00 0.00 42.78 2.74
453 454 9.901724 GATGTATACGACAACAAAAATCTGTAG 57.098 33.333 0.00 0.00 42.78 2.74
454 455 9.647797 ATGTATACGACAACAAAAATCTGTAGA 57.352 29.630 0.00 0.00 42.78 2.59
455 456 9.478768 TGTATACGACAACAAAAATCTGTAGAA 57.521 29.630 0.00 0.00 34.15 2.10
458 459 7.548196 ACGACAACAAAAATCTGTAGAAAGA 57.452 32.000 0.00 0.00 0.00 2.52
459 460 7.981142 ACGACAACAAAAATCTGTAGAAAGAA 58.019 30.769 0.00 0.00 0.00 2.52
460 461 8.122952 ACGACAACAAAAATCTGTAGAAAGAAG 58.877 33.333 0.00 0.00 0.00 2.85
461 462 8.335356 CGACAACAAAAATCTGTAGAAAGAAGA 58.665 33.333 0.00 0.00 0.00 2.87
463 464 9.956720 ACAACAAAAATCTGTAGAAAGAAGATG 57.043 29.630 0.00 0.00 31.11 2.90
472 473 8.383318 TCTGTAGAAAGAAGATGAAACAAAGG 57.617 34.615 0.00 0.00 0.00 3.11
473 474 8.210946 TCTGTAGAAAGAAGATGAAACAAAGGA 58.789 33.333 0.00 0.00 0.00 3.36
474 475 8.383318 TGTAGAAAGAAGATGAAACAAAGGAG 57.617 34.615 0.00 0.00 0.00 3.69
475 476 6.890979 AGAAAGAAGATGAAACAAAGGAGG 57.109 37.500 0.00 0.00 0.00 4.30
476 477 5.242615 AGAAAGAAGATGAAACAAAGGAGGC 59.757 40.000 0.00 0.00 0.00 4.70
477 478 4.104383 AGAAGATGAAACAAAGGAGGCA 57.896 40.909 0.00 0.00 0.00 4.75
478 479 4.670765 AGAAGATGAAACAAAGGAGGCAT 58.329 39.130 0.00 0.00 0.00 4.40
479 480 4.704057 AGAAGATGAAACAAAGGAGGCATC 59.296 41.667 0.00 0.00 34.02 3.91
480 481 4.038271 AGATGAAACAAAGGAGGCATCA 57.962 40.909 0.00 0.00 35.74 3.07
481 482 4.410099 AGATGAAACAAAGGAGGCATCAA 58.590 39.130 0.00 0.00 35.74 2.57
482 483 4.219288 AGATGAAACAAAGGAGGCATCAAC 59.781 41.667 0.00 0.00 35.74 3.18
483 484 3.295093 TGAAACAAAGGAGGCATCAACA 58.705 40.909 0.00 0.00 0.00 3.33
484 485 3.318839 TGAAACAAAGGAGGCATCAACAG 59.681 43.478 0.00 0.00 0.00 3.16
485 486 1.251251 ACAAAGGAGGCATCAACAGC 58.749 50.000 0.00 0.00 0.00 4.40
486 487 1.250328 CAAAGGAGGCATCAACAGCA 58.750 50.000 0.00 0.00 0.00 4.41
487 488 1.068055 CAAAGGAGGCATCAACAGCAC 60.068 52.381 0.00 0.00 0.00 4.40
488 489 0.111061 AAGGAGGCATCAACAGCACA 59.889 50.000 0.00 0.00 0.00 4.57
489 490 0.322277 AGGAGGCATCAACAGCACAG 60.322 55.000 0.00 0.00 0.00 3.66
490 491 1.310933 GGAGGCATCAACAGCACAGG 61.311 60.000 0.00 0.00 0.00 4.00
491 492 0.321919 GAGGCATCAACAGCACAGGA 60.322 55.000 0.00 0.00 0.00 3.86
492 493 0.322277 AGGCATCAACAGCACAGGAG 60.322 55.000 0.00 0.00 0.00 3.69
493 494 1.505353 GCATCAACAGCACAGGAGC 59.495 57.895 0.00 0.00 0.00 4.70
494 495 1.930908 GCATCAACAGCACAGGAGCC 61.931 60.000 0.00 0.00 34.23 4.70
495 496 0.322277 CATCAACAGCACAGGAGCCT 60.322 55.000 0.00 0.00 34.23 4.58
496 497 0.035630 ATCAACAGCACAGGAGCCTC 60.036 55.000 0.00 0.00 34.23 4.70
497 498 2.031516 CAACAGCACAGGAGCCTCG 61.032 63.158 0.00 0.00 34.23 4.63
498 499 3.245668 AACAGCACAGGAGCCTCGG 62.246 63.158 0.00 0.00 34.23 4.63
499 500 3.385384 CAGCACAGGAGCCTCGGA 61.385 66.667 0.00 0.00 34.23 4.55
500 501 2.604686 AGCACAGGAGCCTCGGAA 60.605 61.111 0.00 0.00 34.23 4.30
501 502 1.992277 AGCACAGGAGCCTCGGAAT 60.992 57.895 0.00 0.00 34.23 3.01
502 503 0.687757 AGCACAGGAGCCTCGGAATA 60.688 55.000 0.00 0.00 34.23 1.75
503 504 0.178068 GCACAGGAGCCTCGGAATAA 59.822 55.000 0.00 0.00 0.00 1.40
504 505 1.406887 GCACAGGAGCCTCGGAATAAA 60.407 52.381 0.00 0.00 0.00 1.40
505 506 2.555199 CACAGGAGCCTCGGAATAAAG 58.445 52.381 0.00 0.00 0.00 1.85
506 507 2.168521 CACAGGAGCCTCGGAATAAAGA 59.831 50.000 0.00 0.00 0.00 2.52
507 508 2.432510 ACAGGAGCCTCGGAATAAAGAG 59.567 50.000 0.00 0.00 0.00 2.85
508 509 2.432510 CAGGAGCCTCGGAATAAAGAGT 59.567 50.000 0.00 0.00 32.88 3.24
509 510 3.108376 AGGAGCCTCGGAATAAAGAGTT 58.892 45.455 0.00 0.00 32.88 3.01
510 511 3.519913 AGGAGCCTCGGAATAAAGAGTTT 59.480 43.478 0.00 0.00 32.88 2.66
511 512 4.715297 AGGAGCCTCGGAATAAAGAGTTTA 59.285 41.667 0.00 0.00 32.88 2.01
530 531 9.482175 AGAGTTTATACTAGTCAGACCAATTCT 57.518 33.333 0.00 0.00 33.84 2.40
556 557 1.227089 CACCTCGATTCCTCTGCCG 60.227 63.158 0.00 0.00 0.00 5.69
562 563 1.602237 GATTCCTCTGCCGTCCCAA 59.398 57.895 0.00 0.00 0.00 4.12
563 564 0.035439 GATTCCTCTGCCGTCCCAAA 60.035 55.000 0.00 0.00 0.00 3.28
617 914 1.133253 CCAAGTTGCGCATCTCACG 59.867 57.895 20.62 12.22 0.00 4.35
634 931 1.931841 CACGACAATCCAGATCAGCAG 59.068 52.381 0.00 0.00 0.00 4.24
651 948 0.589223 CAGTCGACGGATCTAGCTCC 59.411 60.000 10.41 2.27 0.00 4.70
652 949 0.535553 AGTCGACGGATCTAGCTCCC 60.536 60.000 10.46 0.00 31.04 4.30
656 953 0.759436 GACGGATCTAGCTCCCCCAA 60.759 60.000 7.04 0.00 31.04 4.12
708 2043 7.191551 TGTTCCTACTCGTAGTTTGATATTCG 58.808 38.462 3.64 0.00 0.00 3.34
730 2065 1.596464 GCTTAATCAGCTGCATGACGC 60.596 52.381 9.47 3.42 46.27 5.19
831 2166 7.786943 AGATCTCCTTTCCTTTCCTTTTTCTTT 59.213 33.333 0.00 0.00 0.00 2.52
900 2235 5.078411 AGTCCACTTCATAAGCACTAGTG 57.922 43.478 18.93 18.93 36.77 2.74
935 2270 1.800805 CAGTTGTACTGTGCTCTGGG 58.199 55.000 11.27 0.00 41.19 4.45
955 2290 0.605589 CTCTTGGAAGCCGAGACTGT 59.394 55.000 0.00 0.00 38.98 3.55
993 2328 1.001641 GTTCCATCACCAGCAGGCT 60.002 57.895 0.00 0.00 39.06 4.58
1010 2350 1.364626 GCTGCAGCAATGTACTCGCT 61.365 55.000 33.36 0.00 41.59 4.93
1021 2361 5.300752 CAATGTACTCGCTGAGGGATTTAT 58.699 41.667 0.00 0.00 33.35 1.40
1246 2587 0.877743 TCTCTGCACGTCTGAGACTG 59.122 55.000 11.26 9.02 42.50 3.51
1560 2907 3.461773 CGTCGCACCTGGAGGGAT 61.462 66.667 13.50 0.00 40.27 3.85
1843 3191 1.291877 CGTTGGCGTTCTTCCAGGAG 61.292 60.000 0.00 0.00 34.66 3.69
1888 3236 2.397413 CTGGGGAGCACGACCAGTTT 62.397 60.000 13.07 0.00 45.21 2.66
1948 3298 0.392998 GGGTGACGGTGATGCTGATT 60.393 55.000 0.00 0.00 0.00 2.57
2186 3542 6.147164 TGTGTTTGTTCGAGATTTTAGCTAGG 59.853 38.462 0.00 0.00 0.00 3.02
2225 3585 7.458397 TGGATAACAGGAGTAATCAGTTGTTT 58.542 34.615 10.67 2.60 31.84 2.83
2296 3656 5.744666 TGAGTTGTTTTGGTACTGTTAGC 57.255 39.130 0.00 0.00 0.00 3.09
2347 3707 0.819582 ATGCAGCATTACCACCTTGC 59.180 50.000 0.52 0.00 36.63 4.01
2462 3823 5.123979 GGTACTGGAAACATCCAAGATGTTC 59.876 44.000 20.05 14.05 40.94 3.18
2599 3960 2.847327 ACAGATGTGTGTCTTCCCTG 57.153 50.000 0.00 0.00 34.75 4.45
2601 3962 2.705658 ACAGATGTGTGTCTTCCCTGAA 59.294 45.455 0.00 0.00 34.75 3.02
2616 3977 9.063615 GTCTTCCCTGAAAATAAGAACAAGTTA 57.936 33.333 0.00 0.00 30.24 2.24
2816 4177 8.397906 TCTGAAGTCAGTTTTAAAGTTGTGATG 58.602 33.333 8.14 0.00 44.12 3.07
2855 4216 6.016276 AGAGGAACGATTAATTTTGCACAACT 60.016 34.615 0.00 0.00 0.00 3.16
2914 4276 9.626045 GCTAGCTTGTAATGTCAAACTTTAATT 57.374 29.630 7.70 0.00 0.00 1.40
2917 4279 9.683069 AGCTTGTAATGTCAAACTTTAATTCTG 57.317 29.630 0.00 0.00 0.00 3.02
2918 4280 8.427774 GCTTGTAATGTCAAACTTTAATTCTGC 58.572 33.333 0.00 0.00 0.00 4.26
2919 4281 9.462174 CTTGTAATGTCAAACTTTAATTCTGCA 57.538 29.630 0.00 0.00 0.00 4.41
2920 4282 9.979578 TTGTAATGTCAAACTTTAATTCTGCAT 57.020 25.926 0.00 0.00 0.00 3.96
2965 4327 7.433680 AGCACATACGAATGACATATTCTGTA 58.566 34.615 0.00 0.00 38.54 2.74
3101 4463 3.275143 ACTTCCGTTTGACATGACACAA 58.725 40.909 0.00 0.00 0.00 3.33
3116 4478 4.005650 TGACACAAAATGAGATCTCTGGC 58.994 43.478 22.95 14.28 0.00 4.85
3123 4485 0.252421 TGAGATCTCTGGCAGTGGGT 60.252 55.000 22.95 5.03 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.533154 TGGTACCTGTAATTTGAGTTTGTGG 59.467 40.000 14.36 0.00 0.00 4.17
1 2 6.627395 TGGTACCTGTAATTTGAGTTTGTG 57.373 37.500 14.36 0.00 0.00 3.33
2 3 6.264518 CCTTGGTACCTGTAATTTGAGTTTGT 59.735 38.462 14.36 0.00 0.00 2.83
3 4 6.264518 ACCTTGGTACCTGTAATTTGAGTTTG 59.735 38.462 14.36 0.00 0.00 2.93
4 5 6.370453 ACCTTGGTACCTGTAATTTGAGTTT 58.630 36.000 14.36 0.00 0.00 2.66
5 6 5.948842 ACCTTGGTACCTGTAATTTGAGTT 58.051 37.500 14.36 0.00 0.00 3.01
6 7 5.578157 ACCTTGGTACCTGTAATTTGAGT 57.422 39.130 14.36 0.00 0.00 3.41
7 8 7.989416 TTTACCTTGGTACCTGTAATTTGAG 57.011 36.000 14.36 0.00 0.00 3.02
8 9 8.943594 ATTTTACCTTGGTACCTGTAATTTGA 57.056 30.769 14.36 1.42 0.00 2.69
9 10 9.990360 AAATTTTACCTTGGTACCTGTAATTTG 57.010 29.630 14.36 0.00 0.00 2.32
15 16 8.943594 TCATTAAATTTTACCTTGGTACCTGT 57.056 30.769 14.36 10.21 0.00 4.00
16 17 9.020731 ACTCATTAAATTTTACCTTGGTACCTG 57.979 33.333 14.36 5.99 0.00 4.00
17 18 9.020731 CACTCATTAAATTTTACCTTGGTACCT 57.979 33.333 14.36 0.00 0.00 3.08
18 19 7.758076 GCACTCATTAAATTTTACCTTGGTACC 59.242 37.037 4.43 4.43 0.00 3.34
19 20 8.520351 AGCACTCATTAAATTTTACCTTGGTAC 58.480 33.333 0.00 0.00 0.00 3.34
20 21 8.644374 AGCACTCATTAAATTTTACCTTGGTA 57.356 30.769 0.00 0.00 0.00 3.25
21 22 7.539034 AGCACTCATTAAATTTTACCTTGGT 57.461 32.000 0.00 0.00 0.00 3.67
22 23 8.711457 CAAAGCACTCATTAAATTTTACCTTGG 58.289 33.333 0.00 0.00 0.00 3.61
23 24 8.711457 CCAAAGCACTCATTAAATTTTACCTTG 58.289 33.333 0.00 0.00 0.00 3.61
24 25 8.646900 TCCAAAGCACTCATTAAATTTTACCTT 58.353 29.630 0.00 0.00 0.00 3.50
25 26 8.189119 TCCAAAGCACTCATTAAATTTTACCT 57.811 30.769 0.00 0.00 0.00 3.08
26 27 8.825667 TTCCAAAGCACTCATTAAATTTTACC 57.174 30.769 0.00 0.00 0.00 2.85
50 51 6.854381 CGTTTAACAAAAATAGAAGTCGGCTT 59.146 34.615 0.00 0.00 37.71 4.35
51 52 6.368213 CGTTTAACAAAAATAGAAGTCGGCT 58.632 36.000 0.00 0.00 0.00 5.52
52 53 5.566395 CCGTTTAACAAAAATAGAAGTCGGC 59.434 40.000 0.00 0.00 0.00 5.54
53 54 6.073112 TCCCGTTTAACAAAAATAGAAGTCGG 60.073 38.462 0.00 0.00 0.00 4.79
54 55 6.890558 TCCCGTTTAACAAAAATAGAAGTCG 58.109 36.000 0.00 0.00 0.00 4.18
55 56 8.508875 TGATCCCGTTTAACAAAAATAGAAGTC 58.491 33.333 0.00 0.00 0.00 3.01
56 57 8.398878 TGATCCCGTTTAACAAAAATAGAAGT 57.601 30.769 0.00 0.00 0.00 3.01
57 58 9.855021 AATGATCCCGTTTAACAAAAATAGAAG 57.145 29.630 0.00 0.00 0.00 2.85
64 65 9.522804 GCATATTAATGATCCCGTTTAACAAAA 57.477 29.630 0.00 0.00 34.84 2.44
65 66 8.908903 AGCATATTAATGATCCCGTTTAACAAA 58.091 29.630 0.00 0.00 34.84 2.83
66 67 8.458573 AGCATATTAATGATCCCGTTTAACAA 57.541 30.769 0.00 0.00 34.84 2.83
67 68 8.349245 CAAGCATATTAATGATCCCGTTTAACA 58.651 33.333 0.00 0.00 34.84 2.41
68 69 7.326063 GCAAGCATATTAATGATCCCGTTTAAC 59.674 37.037 0.00 0.00 34.84 2.01
69 70 7.013750 TGCAAGCATATTAATGATCCCGTTTAA 59.986 33.333 0.00 0.00 34.84 1.52
70 71 6.488344 TGCAAGCATATTAATGATCCCGTTTA 59.512 34.615 0.00 0.00 34.84 2.01
71 72 5.301551 TGCAAGCATATTAATGATCCCGTTT 59.698 36.000 0.00 0.00 34.84 3.60
72 73 4.826733 TGCAAGCATATTAATGATCCCGTT 59.173 37.500 0.00 0.00 34.84 4.44
73 74 4.397420 TGCAAGCATATTAATGATCCCGT 58.603 39.130 0.00 0.00 34.84 5.28
74 75 5.337554 CATGCAAGCATATTAATGATCCCG 58.662 41.667 7.29 0.00 34.84 5.14
75 76 5.107133 GCATGCAAGCATATTAATGATCCC 58.893 41.667 14.21 0.00 34.84 3.85
76 77 5.716094 TGCATGCAAGCATATTAATGATCC 58.284 37.500 20.30 0.00 40.11 3.36
94 95 5.838529 TCTCATTCCTTTATTGCATGCATG 58.161 37.500 23.37 22.70 0.00 4.06
95 96 6.474140 TTCTCATTCCTTTATTGCATGCAT 57.526 33.333 23.37 14.00 0.00 3.96
96 97 5.918426 TTCTCATTCCTTTATTGCATGCA 57.082 34.783 18.46 18.46 0.00 3.96
97 98 6.509656 TCATTCTCATTCCTTTATTGCATGC 58.490 36.000 11.82 11.82 0.00 4.06
98 99 8.195436 ACTTCATTCTCATTCCTTTATTGCATG 58.805 33.333 0.00 0.00 0.00 4.06
99 100 8.302515 ACTTCATTCTCATTCCTTTATTGCAT 57.697 30.769 0.00 0.00 0.00 3.96
100 101 7.707624 ACTTCATTCTCATTCCTTTATTGCA 57.292 32.000 0.00 0.00 0.00 4.08
101 102 7.859875 GCTACTTCATTCTCATTCCTTTATTGC 59.140 37.037 0.00 0.00 0.00 3.56
102 103 8.896744 TGCTACTTCATTCTCATTCCTTTATTG 58.103 33.333 0.00 0.00 0.00 1.90
103 104 8.897752 GTGCTACTTCATTCTCATTCCTTTATT 58.102 33.333 0.00 0.00 0.00 1.40
104 105 8.049117 TGTGCTACTTCATTCTCATTCCTTTAT 58.951 33.333 0.00 0.00 0.00 1.40
105 106 7.334421 GTGTGCTACTTCATTCTCATTCCTTTA 59.666 37.037 0.00 0.00 0.00 1.85
106 107 6.150140 GTGTGCTACTTCATTCTCATTCCTTT 59.850 38.462 0.00 0.00 0.00 3.11
107 108 5.645497 GTGTGCTACTTCATTCTCATTCCTT 59.355 40.000 0.00 0.00 0.00 3.36
108 109 5.046014 AGTGTGCTACTTCATTCTCATTCCT 60.046 40.000 0.00 0.00 35.67 3.36
109 110 5.064452 CAGTGTGCTACTTCATTCTCATTCC 59.936 44.000 0.00 0.00 37.60 3.01
110 111 5.641209 ACAGTGTGCTACTTCATTCTCATTC 59.359 40.000 0.00 0.00 37.60 2.67
111 112 5.555017 ACAGTGTGCTACTTCATTCTCATT 58.445 37.500 0.00 0.00 37.60 2.57
112 113 5.157940 ACAGTGTGCTACTTCATTCTCAT 57.842 39.130 0.00 0.00 37.60 2.90
113 114 4.039124 TGACAGTGTGCTACTTCATTCTCA 59.961 41.667 0.00 0.00 37.60 3.27
114 115 4.560128 TGACAGTGTGCTACTTCATTCTC 58.440 43.478 0.00 0.00 37.60 2.87
115 116 4.607293 TGACAGTGTGCTACTTCATTCT 57.393 40.909 0.00 0.00 37.60 2.40
116 117 5.869753 AATGACAGTGTGCTACTTCATTC 57.130 39.130 0.00 0.00 39.81 2.67
117 118 7.105588 TCATAATGACAGTGTGCTACTTCATT 58.894 34.615 20.74 20.74 42.68 2.57
118 119 6.643388 TCATAATGACAGTGTGCTACTTCAT 58.357 36.000 0.00 0.00 37.60 2.57
119 120 6.036577 TCATAATGACAGTGTGCTACTTCA 57.963 37.500 0.00 0.00 37.60 3.02
120 121 7.545362 AATCATAATGACAGTGTGCTACTTC 57.455 36.000 0.00 0.00 37.60 3.01
121 122 8.040727 TGTAATCATAATGACAGTGTGCTACTT 58.959 33.333 0.00 0.00 37.60 2.24
122 123 7.555965 TGTAATCATAATGACAGTGTGCTACT 58.444 34.615 0.00 0.00 41.36 2.57
123 124 7.770801 TGTAATCATAATGACAGTGTGCTAC 57.229 36.000 0.00 1.03 0.00 3.58
124 125 7.041848 GCATGTAATCATAATGACAGTGTGCTA 60.042 37.037 0.00 0.00 31.26 3.49
125 126 6.238566 GCATGTAATCATAATGACAGTGTGCT 60.239 38.462 0.00 0.00 31.26 4.40
126 127 5.911280 GCATGTAATCATAATGACAGTGTGC 59.089 40.000 0.00 0.00 29.40 4.57
127 128 7.018635 TGCATGTAATCATAATGACAGTGTG 57.981 36.000 0.00 0.00 29.40 3.82
128 129 7.645402 CATGCATGTAATCATAATGACAGTGT 58.355 34.615 18.91 0.00 29.40 3.55
129 130 6.581166 GCATGCATGTAATCATAATGACAGTG 59.419 38.462 26.79 0.00 29.40 3.66
130 131 6.263617 TGCATGCATGTAATCATAATGACAGT 59.736 34.615 26.79 0.00 29.40 3.55
131 132 6.674066 TGCATGCATGTAATCATAATGACAG 58.326 36.000 26.79 0.00 29.40 3.51
132 133 6.294286 CCTGCATGCATGTAATCATAATGACA 60.294 38.462 26.79 10.89 33.13 3.58
133 134 6.090783 CCTGCATGCATGTAATCATAATGAC 58.909 40.000 26.79 6.83 33.13 3.06
134 135 5.771165 ACCTGCATGCATGTAATCATAATGA 59.229 36.000 24.74 0.00 33.13 2.57
135 136 6.020971 ACCTGCATGCATGTAATCATAATG 57.979 37.500 24.74 7.24 33.82 1.90
136 137 7.949690 ATACCTGCATGCATGTAATCATAAT 57.050 32.000 30.95 16.50 32.49 1.28
137 138 7.764141 AATACCTGCATGCATGTAATCATAA 57.236 32.000 30.95 15.16 32.49 1.90
138 139 8.860780 TTAATACCTGCATGCATGTAATCATA 57.139 30.769 30.95 20.68 32.49 2.15
139 140 7.764141 TTAATACCTGCATGCATGTAATCAT 57.236 32.000 30.95 21.44 32.49 2.45
140 141 7.579761 TTTAATACCTGCATGCATGTAATCA 57.420 32.000 30.95 17.12 32.49 2.57
141 142 8.870160 TTTTTAATACCTGCATGCATGTAATC 57.130 30.769 30.95 11.44 32.49 1.75
163 164 9.797556 GTTGTTTTCTCATACTACCAACTTTTT 57.202 29.630 0.00 0.00 0.00 1.94
164 165 8.962679 TGTTGTTTTCTCATACTACCAACTTTT 58.037 29.630 0.00 0.00 33.81 2.27
165 166 8.514330 TGTTGTTTTCTCATACTACCAACTTT 57.486 30.769 0.00 0.00 33.81 2.66
166 167 8.691661 ATGTTGTTTTCTCATACTACCAACTT 57.308 30.769 0.00 0.00 33.81 2.66
167 168 8.691661 AATGTTGTTTTCTCATACTACCAACT 57.308 30.769 0.00 0.00 33.81 3.16
188 189 6.374333 ACAGTAATCGAGGCAAACATTAATGT 59.626 34.615 15.47 15.47 44.20 2.71
189 190 6.785191 ACAGTAATCGAGGCAAACATTAATG 58.215 36.000 14.01 14.01 34.50 1.90
190 191 7.391148 AACAGTAATCGAGGCAAACATTAAT 57.609 32.000 0.00 0.00 0.00 1.40
191 192 6.811253 AACAGTAATCGAGGCAAACATTAA 57.189 33.333 0.00 0.00 0.00 1.40
192 193 7.064134 CACTAACAGTAATCGAGGCAAACATTA 59.936 37.037 0.00 0.00 0.00 1.90
193 194 5.938125 ACTAACAGTAATCGAGGCAAACATT 59.062 36.000 0.00 0.00 0.00 2.71
194 195 5.351465 CACTAACAGTAATCGAGGCAAACAT 59.649 40.000 0.00 0.00 0.00 2.71
195 196 4.688879 CACTAACAGTAATCGAGGCAAACA 59.311 41.667 0.00 0.00 0.00 2.83
196 197 4.092968 CCACTAACAGTAATCGAGGCAAAC 59.907 45.833 0.00 0.00 0.00 2.93
197 198 4.250464 CCACTAACAGTAATCGAGGCAAA 58.750 43.478 0.00 0.00 0.00 3.68
198 199 3.857052 CCACTAACAGTAATCGAGGCAA 58.143 45.455 0.00 0.00 0.00 4.52
199 200 2.418197 GCCACTAACAGTAATCGAGGCA 60.418 50.000 0.00 0.00 39.35 4.75
200 201 2.202566 GCCACTAACAGTAATCGAGGC 58.797 52.381 0.00 0.00 0.00 4.70
201 202 2.431057 AGGCCACTAACAGTAATCGAGG 59.569 50.000 5.01 0.00 0.00 4.63
202 203 3.802948 AGGCCACTAACAGTAATCGAG 57.197 47.619 5.01 0.00 0.00 4.04
203 204 3.259876 ACAAGGCCACTAACAGTAATCGA 59.740 43.478 5.01 0.00 0.00 3.59
204 205 3.596214 ACAAGGCCACTAACAGTAATCG 58.404 45.455 5.01 0.00 0.00 3.34
205 206 7.723324 TCTATACAAGGCCACTAACAGTAATC 58.277 38.462 5.01 0.00 0.00 1.75
206 207 7.670605 TCTATACAAGGCCACTAACAGTAAT 57.329 36.000 5.01 0.00 0.00 1.89
207 208 7.497595 CATCTATACAAGGCCACTAACAGTAA 58.502 38.462 5.01 0.00 0.00 2.24
208 209 6.462487 GCATCTATACAAGGCCACTAACAGTA 60.462 42.308 5.01 0.00 0.00 2.74
209 210 5.685075 GCATCTATACAAGGCCACTAACAGT 60.685 44.000 5.01 0.00 0.00 3.55
210 211 4.752101 GCATCTATACAAGGCCACTAACAG 59.248 45.833 5.01 0.00 0.00 3.16
211 212 4.163268 TGCATCTATACAAGGCCACTAACA 59.837 41.667 5.01 0.00 0.00 2.41
212 213 4.703897 TGCATCTATACAAGGCCACTAAC 58.296 43.478 5.01 0.00 0.00 2.34
213 214 5.366482 TTGCATCTATACAAGGCCACTAA 57.634 39.130 5.01 0.00 0.00 2.24
214 215 5.104527 AGTTTGCATCTATACAAGGCCACTA 60.105 40.000 5.01 0.00 0.00 2.74
215 216 3.931907 TTGCATCTATACAAGGCCACT 57.068 42.857 5.01 0.00 0.00 4.00
216 217 3.947834 AGTTTGCATCTATACAAGGCCAC 59.052 43.478 5.01 0.00 0.00 5.01
217 218 3.947196 CAGTTTGCATCTATACAAGGCCA 59.053 43.478 5.01 0.00 0.00 5.36
218 219 3.947834 ACAGTTTGCATCTATACAAGGCC 59.052 43.478 0.00 0.00 0.00 5.19
219 220 6.867662 ATACAGTTTGCATCTATACAAGGC 57.132 37.500 0.00 0.00 0.00 4.35
228 229 8.246180 CCACTATCAAAAATACAGTTTGCATCT 58.754 33.333 0.00 0.00 36.19 2.90
229 230 7.009540 GCCACTATCAAAAATACAGTTTGCATC 59.990 37.037 0.00 0.00 36.19 3.91
230 231 6.813152 GCCACTATCAAAAATACAGTTTGCAT 59.187 34.615 0.00 0.00 36.19 3.96
231 232 6.155827 GCCACTATCAAAAATACAGTTTGCA 58.844 36.000 0.00 0.00 36.19 4.08
232 233 5.576774 GGCCACTATCAAAAATACAGTTTGC 59.423 40.000 0.00 0.00 36.19 3.68
233 234 6.924111 AGGCCACTATCAAAAATACAGTTTG 58.076 36.000 5.01 0.00 37.32 2.93
234 235 7.015195 ACAAGGCCACTATCAAAAATACAGTTT 59.985 33.333 5.01 0.00 0.00 2.66
235 236 6.493458 ACAAGGCCACTATCAAAAATACAGTT 59.507 34.615 5.01 0.00 0.00 3.16
236 237 6.010219 ACAAGGCCACTATCAAAAATACAGT 58.990 36.000 5.01 0.00 0.00 3.55
237 238 6.515272 ACAAGGCCACTATCAAAAATACAG 57.485 37.500 5.01 0.00 0.00 2.74
238 239 9.688091 TTATACAAGGCCACTATCAAAAATACA 57.312 29.630 5.01 0.00 0.00 2.29
240 241 9.349713 CCTTATACAAGGCCACTATCAAAAATA 57.650 33.333 5.01 0.00 44.90 1.40
241 242 8.237811 CCTTATACAAGGCCACTATCAAAAAT 57.762 34.615 5.01 0.00 44.90 1.82
242 243 7.639113 CCTTATACAAGGCCACTATCAAAAA 57.361 36.000 5.01 0.00 44.90 1.94
256 257 4.660771 ACTCCCTCCATTCCCTTATACAAG 59.339 45.833 0.00 0.00 0.00 3.16
257 258 4.641868 ACTCCCTCCATTCCCTTATACAA 58.358 43.478 0.00 0.00 0.00 2.41
258 259 4.295905 ACTCCCTCCATTCCCTTATACA 57.704 45.455 0.00 0.00 0.00 2.29
259 260 5.404395 AGTACTCCCTCCATTCCCTTATAC 58.596 45.833 0.00 0.00 0.00 1.47
260 261 5.698369 AGTACTCCCTCCATTCCCTTATA 57.302 43.478 0.00 0.00 0.00 0.98
261 262 4.578149 AGTACTCCCTCCATTCCCTTAT 57.422 45.455 0.00 0.00 0.00 1.73
262 263 4.296056 GAAGTACTCCCTCCATTCCCTTA 58.704 47.826 0.00 0.00 0.00 2.69
263 264 2.972153 AGTACTCCCTCCATTCCCTT 57.028 50.000 0.00 0.00 0.00 3.95
264 265 2.765502 GAAGTACTCCCTCCATTCCCT 58.234 52.381 0.00 0.00 0.00 4.20
265 266 1.413077 CGAAGTACTCCCTCCATTCCC 59.587 57.143 0.00 0.00 0.00 3.97
266 267 1.202545 GCGAAGTACTCCCTCCATTCC 60.203 57.143 0.00 0.00 0.00 3.01
267 268 1.202545 GGCGAAGTACTCCCTCCATTC 60.203 57.143 0.00 0.00 0.00 2.67
268 269 0.831307 GGCGAAGTACTCCCTCCATT 59.169 55.000 0.00 0.00 0.00 3.16
269 270 0.325296 TGGCGAAGTACTCCCTCCAT 60.325 55.000 0.00 0.00 0.00 3.41
270 271 0.325296 ATGGCGAAGTACTCCCTCCA 60.325 55.000 8.73 8.73 0.00 3.86
271 272 0.831307 AATGGCGAAGTACTCCCTCC 59.169 55.000 0.00 0.00 0.00 4.30
272 273 1.941325 CAATGGCGAAGTACTCCCTC 58.059 55.000 0.00 0.00 0.00 4.30
273 274 0.107654 GCAATGGCGAAGTACTCCCT 60.108 55.000 0.00 0.00 0.00 4.20
274 275 1.095807 GGCAATGGCGAAGTACTCCC 61.096 60.000 0.00 0.00 42.47 4.30
275 276 0.107654 AGGCAATGGCGAAGTACTCC 60.108 55.000 0.00 0.00 42.47 3.85
276 277 1.009829 CAGGCAATGGCGAAGTACTC 58.990 55.000 0.00 0.00 42.47 2.59
277 278 0.613260 TCAGGCAATGGCGAAGTACT 59.387 50.000 0.00 0.00 42.47 2.73
278 279 1.448985 TTCAGGCAATGGCGAAGTAC 58.551 50.000 0.00 0.00 42.47 2.73
279 280 2.083774 CTTTCAGGCAATGGCGAAGTA 58.916 47.619 0.00 0.00 42.47 2.24
280 281 0.883833 CTTTCAGGCAATGGCGAAGT 59.116 50.000 0.00 0.00 42.47 3.01
281 282 0.457337 GCTTTCAGGCAATGGCGAAG 60.457 55.000 13.18 13.18 42.47 3.79
282 283 1.177895 TGCTTTCAGGCAATGGCGAA 61.178 50.000 0.00 5.63 42.47 4.70
283 284 1.588824 CTGCTTTCAGGCAATGGCGA 61.589 55.000 0.00 0.00 41.94 5.54
284 285 1.153901 CTGCTTTCAGGCAATGGCG 60.154 57.895 0.00 0.00 41.94 5.69
285 286 1.447314 GCTGCTTTCAGGCAATGGC 60.447 57.895 0.00 0.00 41.94 4.40
286 287 0.319083 TTGCTGCTTTCAGGCAATGG 59.681 50.000 0.00 0.00 41.94 3.16
287 288 1.000506 ACTTGCTGCTTTCAGGCAATG 59.999 47.619 0.00 0.00 41.94 2.82
288 289 1.335145 ACTTGCTGCTTTCAGGCAAT 58.665 45.000 0.00 0.00 41.94 3.56
289 290 1.881973 CTACTTGCTGCTTTCAGGCAA 59.118 47.619 0.00 0.00 41.94 4.52
290 291 1.072173 TCTACTTGCTGCTTTCAGGCA 59.928 47.619 0.00 0.00 40.65 4.75
291 292 1.813513 TCTACTTGCTGCTTTCAGGC 58.186 50.000 0.00 0.00 40.65 4.85
292 293 2.485814 GGTTCTACTTGCTGCTTTCAGG 59.514 50.000 0.00 0.00 40.65 3.86
293 294 3.141398 TGGTTCTACTTGCTGCTTTCAG 58.859 45.455 0.00 0.00 43.16 3.02
294 295 3.207265 TGGTTCTACTTGCTGCTTTCA 57.793 42.857 0.00 0.00 0.00 2.69
295 296 4.568152 TTTGGTTCTACTTGCTGCTTTC 57.432 40.909 0.00 0.00 0.00 2.62
296 297 5.535753 AATTTGGTTCTACTTGCTGCTTT 57.464 34.783 0.00 0.00 0.00 3.51
297 298 6.648879 TTAATTTGGTTCTACTTGCTGCTT 57.351 33.333 0.00 0.00 0.00 3.91
298 299 6.840780 ATTAATTTGGTTCTACTTGCTGCT 57.159 33.333 0.00 0.00 0.00 4.24
299 300 8.980143 TTTATTAATTTGGTTCTACTTGCTGC 57.020 30.769 0.00 0.00 0.00 5.25
330 331 9.770097 CATCCATGTATATGACTGACTTTAAGT 57.230 33.333 0.00 0.00 36.36 2.24
331 332 9.770097 ACATCCATGTATATGACTGACTTTAAG 57.230 33.333 0.25 0.00 39.68 1.85
332 333 9.764363 GACATCCATGTATATGACTGACTTTAA 57.236 33.333 0.25 0.00 41.95 1.52
333 334 9.147732 AGACATCCATGTATATGACTGACTTTA 57.852 33.333 0.25 0.00 41.95 1.85
334 335 8.027524 AGACATCCATGTATATGACTGACTTT 57.972 34.615 0.25 0.00 41.95 2.66
335 336 7.609097 AGACATCCATGTATATGACTGACTT 57.391 36.000 0.25 0.00 41.95 3.01
336 337 8.166726 TCTAGACATCCATGTATATGACTGACT 58.833 37.037 0.25 6.32 41.95 3.41
337 338 8.341892 TCTAGACATCCATGTATATGACTGAC 57.658 38.462 0.25 0.00 41.95 3.51
338 339 9.183368 GATCTAGACATCCATGTATATGACTGA 57.817 37.037 0.25 9.16 41.95 3.41
339 340 9.187996 AGATCTAGACATCCATGTATATGACTG 57.812 37.037 0.25 1.01 41.95 3.51
340 341 9.187996 CAGATCTAGACATCCATGTATATGACT 57.812 37.037 0.25 7.99 41.95 3.41
341 342 8.965819 ACAGATCTAGACATCCATGTATATGAC 58.034 37.037 0.25 1.99 41.95 3.06
342 343 8.964772 CACAGATCTAGACATCCATGTATATGA 58.035 37.037 0.25 0.00 41.95 2.15
343 344 7.705752 GCACAGATCTAGACATCCATGTATATG 59.294 40.741 0.00 0.00 41.95 1.78
344 345 7.398332 TGCACAGATCTAGACATCCATGTATAT 59.602 37.037 0.00 0.00 41.95 0.86
345 346 6.721208 TGCACAGATCTAGACATCCATGTATA 59.279 38.462 0.00 0.00 41.95 1.47
346 347 5.541484 TGCACAGATCTAGACATCCATGTAT 59.459 40.000 0.00 0.00 41.95 2.29
347 348 4.895297 TGCACAGATCTAGACATCCATGTA 59.105 41.667 0.00 0.00 41.95 2.29
348 349 3.708121 TGCACAGATCTAGACATCCATGT 59.292 43.478 0.00 0.00 45.16 3.21
349 350 4.332428 TGCACAGATCTAGACATCCATG 57.668 45.455 0.00 0.00 0.00 3.66
350 351 4.262938 CCATGCACAGATCTAGACATCCAT 60.263 45.833 0.00 0.00 0.00 3.41
351 352 3.070590 CCATGCACAGATCTAGACATCCA 59.929 47.826 0.00 0.00 0.00 3.41
352 353 3.556633 CCCATGCACAGATCTAGACATCC 60.557 52.174 0.00 0.00 0.00 3.51
353 354 3.070734 ACCCATGCACAGATCTAGACATC 59.929 47.826 0.00 0.00 0.00 3.06
354 355 3.044156 ACCCATGCACAGATCTAGACAT 58.956 45.455 0.00 0.00 0.00 3.06
355 356 2.432146 GACCCATGCACAGATCTAGACA 59.568 50.000 0.00 0.00 0.00 3.41
356 357 2.697751 AGACCCATGCACAGATCTAGAC 59.302 50.000 0.00 0.00 0.00 2.59
357 358 2.697229 CAGACCCATGCACAGATCTAGA 59.303 50.000 0.00 0.00 0.00 2.43
358 359 2.806019 GCAGACCCATGCACAGATCTAG 60.806 54.545 0.00 0.00 45.77 2.43
359 360 1.139654 GCAGACCCATGCACAGATCTA 59.860 52.381 0.00 0.00 45.77 1.98
360 361 0.107312 GCAGACCCATGCACAGATCT 60.107 55.000 0.00 0.00 45.77 2.75
361 362 2.401967 GCAGACCCATGCACAGATC 58.598 57.895 0.00 0.00 45.77 2.75
362 363 4.651867 GCAGACCCATGCACAGAT 57.348 55.556 0.00 0.00 45.77 2.90
368 369 1.509923 GCTTTCAGCAGACCCATGC 59.490 57.895 0.00 0.00 46.88 4.06
369 370 0.323178 AGGCTTTCAGCAGACCCATG 60.323 55.000 0.00 0.00 44.75 3.66
370 371 0.407139 AAGGCTTTCAGCAGACCCAT 59.593 50.000 0.00 0.00 44.75 4.00
371 372 1.064003 TAAGGCTTTCAGCAGACCCA 58.936 50.000 4.45 0.00 44.75 4.51
372 373 2.200373 TTAAGGCTTTCAGCAGACCC 57.800 50.000 4.45 0.00 44.75 4.46
373 374 2.884639 TGTTTAAGGCTTTCAGCAGACC 59.115 45.455 4.45 0.00 44.75 3.85
374 375 3.315191 TGTGTTTAAGGCTTTCAGCAGAC 59.685 43.478 4.45 0.00 44.75 3.51
375 376 3.550820 TGTGTTTAAGGCTTTCAGCAGA 58.449 40.909 4.45 0.00 44.75 4.26
376 377 3.988379 TGTGTTTAAGGCTTTCAGCAG 57.012 42.857 4.45 0.00 44.75 4.24
377 378 4.081972 TGTTTGTGTTTAAGGCTTTCAGCA 60.082 37.500 4.45 0.00 44.75 4.41
378 379 4.429108 TGTTTGTGTTTAAGGCTTTCAGC 58.571 39.130 4.45 0.00 41.46 4.26
379 380 5.516339 CACTGTTTGTGTTTAAGGCTTTCAG 59.484 40.000 4.45 3.84 41.53 3.02
380 381 5.184096 TCACTGTTTGTGTTTAAGGCTTTCA 59.816 36.000 4.45 0.00 46.27 2.69
381 382 5.646606 TCACTGTTTGTGTTTAAGGCTTTC 58.353 37.500 4.45 0.00 46.27 2.62
382 383 5.652994 TCACTGTTTGTGTTTAAGGCTTT 57.347 34.783 4.45 0.00 46.27 3.51
383 384 5.652994 TTCACTGTTTGTGTTTAAGGCTT 57.347 34.783 4.58 4.58 46.27 4.35
384 385 5.652994 TTTCACTGTTTGTGTTTAAGGCT 57.347 34.783 0.00 0.00 46.27 4.58
385 386 6.902224 ATTTTCACTGTTTGTGTTTAAGGC 57.098 33.333 0.00 0.00 46.27 4.35
399 400 9.346725 GCCTCTCAGTTAAATTTATTTTCACTG 57.653 33.333 16.04 16.04 39.16 3.66
400 401 9.301897 AGCCTCTCAGTTAAATTTATTTTCACT 57.698 29.630 0.00 0.00 0.00 3.41
401 402 9.346725 CAGCCTCTCAGTTAAATTTATTTTCAC 57.653 33.333 0.00 0.00 0.00 3.18
402 403 9.295825 TCAGCCTCTCAGTTAAATTTATTTTCA 57.704 29.630 0.00 0.00 0.00 2.69
405 406 9.247861 ACATCAGCCTCTCAGTTAAATTTATTT 57.752 29.630 0.00 0.00 0.00 1.40
406 407 8.814038 ACATCAGCCTCTCAGTTAAATTTATT 57.186 30.769 0.00 0.00 0.00 1.40
409 410 9.331282 GTATACATCAGCCTCTCAGTTAAATTT 57.669 33.333 0.00 0.00 0.00 1.82
410 411 7.653713 CGTATACATCAGCCTCTCAGTTAAATT 59.346 37.037 3.32 0.00 0.00 1.82
411 412 7.014326 TCGTATACATCAGCCTCTCAGTTAAAT 59.986 37.037 3.32 0.00 0.00 1.40
412 413 6.320418 TCGTATACATCAGCCTCTCAGTTAAA 59.680 38.462 3.32 0.00 0.00 1.52
413 414 5.826208 TCGTATACATCAGCCTCTCAGTTAA 59.174 40.000 3.32 0.00 0.00 2.01
414 415 5.238868 GTCGTATACATCAGCCTCTCAGTTA 59.761 44.000 3.32 0.00 0.00 2.24
415 416 4.036971 GTCGTATACATCAGCCTCTCAGTT 59.963 45.833 3.32 0.00 0.00 3.16
416 417 3.566322 GTCGTATACATCAGCCTCTCAGT 59.434 47.826 3.32 0.00 0.00 3.41
417 418 3.565902 TGTCGTATACATCAGCCTCTCAG 59.434 47.826 3.32 0.00 31.43 3.35
418 419 3.551846 TGTCGTATACATCAGCCTCTCA 58.448 45.455 3.32 0.00 31.43 3.27
419 420 4.202020 TGTTGTCGTATACATCAGCCTCTC 60.202 45.833 3.32 0.00 38.10 3.20
420 421 3.699538 TGTTGTCGTATACATCAGCCTCT 59.300 43.478 3.32 0.00 38.10 3.69
421 422 4.041740 TGTTGTCGTATACATCAGCCTC 57.958 45.455 3.32 0.00 38.10 4.70
422 423 4.465632 TTGTTGTCGTATACATCAGCCT 57.534 40.909 3.32 0.00 38.65 4.58
423 424 5.539582 TTTTGTTGTCGTATACATCAGCC 57.460 39.130 3.32 0.00 38.65 4.85
424 425 7.426456 CAGATTTTTGTTGTCGTATACATCAGC 59.574 37.037 3.32 4.27 38.65 4.26
425 426 8.443160 ACAGATTTTTGTTGTCGTATACATCAG 58.557 33.333 3.32 0.00 38.65 2.90
426 427 8.317891 ACAGATTTTTGTTGTCGTATACATCA 57.682 30.769 3.32 0.00 38.10 3.07
427 428 9.901724 CTACAGATTTTTGTTGTCGTATACATC 57.098 33.333 3.32 0.00 38.10 3.06
428 429 9.647797 TCTACAGATTTTTGTTGTCGTATACAT 57.352 29.630 3.32 0.00 38.10 2.29
429 430 9.478768 TTCTACAGATTTTTGTTGTCGTATACA 57.521 29.630 3.32 0.00 35.88 2.29
432 433 9.268268 TCTTTCTACAGATTTTTGTTGTCGTAT 57.732 29.630 0.00 0.00 32.56 3.06
433 434 8.651391 TCTTTCTACAGATTTTTGTTGTCGTA 57.349 30.769 0.00 0.00 32.56 3.43
434 435 7.548196 TCTTTCTACAGATTTTTGTTGTCGT 57.452 32.000 0.00 0.00 32.56 4.34
435 436 8.335356 TCTTCTTTCTACAGATTTTTGTTGTCG 58.665 33.333 0.00 0.00 32.56 4.35
437 438 9.956720 CATCTTCTTTCTACAGATTTTTGTTGT 57.043 29.630 0.00 0.00 32.56 3.32
446 447 9.007901 CCTTTGTTTCATCTTCTTTCTACAGAT 57.992 33.333 0.00 0.00 0.00 2.90
447 448 8.210946 TCCTTTGTTTCATCTTCTTTCTACAGA 58.789 33.333 0.00 0.00 0.00 3.41
448 449 8.383318 TCCTTTGTTTCATCTTCTTTCTACAG 57.617 34.615 0.00 0.00 0.00 2.74
449 450 7.445402 CCTCCTTTGTTTCATCTTCTTTCTACA 59.555 37.037 0.00 0.00 0.00 2.74
450 451 7.574030 GCCTCCTTTGTTTCATCTTCTTTCTAC 60.574 40.741 0.00 0.00 0.00 2.59
451 452 6.431234 GCCTCCTTTGTTTCATCTTCTTTCTA 59.569 38.462 0.00 0.00 0.00 2.10
452 453 5.242615 GCCTCCTTTGTTTCATCTTCTTTCT 59.757 40.000 0.00 0.00 0.00 2.52
453 454 5.010012 TGCCTCCTTTGTTTCATCTTCTTTC 59.990 40.000 0.00 0.00 0.00 2.62
454 455 4.895297 TGCCTCCTTTGTTTCATCTTCTTT 59.105 37.500 0.00 0.00 0.00 2.52
455 456 4.473444 TGCCTCCTTTGTTTCATCTTCTT 58.527 39.130 0.00 0.00 0.00 2.52
456 457 4.104383 TGCCTCCTTTGTTTCATCTTCT 57.896 40.909 0.00 0.00 0.00 2.85
457 458 4.460382 TGATGCCTCCTTTGTTTCATCTTC 59.540 41.667 0.00 0.00 33.48 2.87
458 459 4.410099 TGATGCCTCCTTTGTTTCATCTT 58.590 39.130 0.00 0.00 33.48 2.40
459 460 4.038271 TGATGCCTCCTTTGTTTCATCT 57.962 40.909 0.00 0.00 33.48 2.90
460 461 4.022068 TGTTGATGCCTCCTTTGTTTCATC 60.022 41.667 0.00 0.00 0.00 2.92
461 462 3.896888 TGTTGATGCCTCCTTTGTTTCAT 59.103 39.130 0.00 0.00 0.00 2.57
462 463 3.295093 TGTTGATGCCTCCTTTGTTTCA 58.705 40.909 0.00 0.00 0.00 2.69
463 464 3.858503 GCTGTTGATGCCTCCTTTGTTTC 60.859 47.826 0.00 0.00 0.00 2.78
464 465 2.036346 GCTGTTGATGCCTCCTTTGTTT 59.964 45.455 0.00 0.00 0.00 2.83
465 466 1.615392 GCTGTTGATGCCTCCTTTGTT 59.385 47.619 0.00 0.00 0.00 2.83
466 467 1.251251 GCTGTTGATGCCTCCTTTGT 58.749 50.000 0.00 0.00 0.00 2.83
467 468 1.068055 GTGCTGTTGATGCCTCCTTTG 60.068 52.381 0.00 0.00 0.00 2.77
468 469 1.251251 GTGCTGTTGATGCCTCCTTT 58.749 50.000 0.00 0.00 0.00 3.11
469 470 0.111061 TGTGCTGTTGATGCCTCCTT 59.889 50.000 0.00 0.00 0.00 3.36
470 471 0.322277 CTGTGCTGTTGATGCCTCCT 60.322 55.000 0.00 0.00 0.00 3.69
471 472 1.310933 CCTGTGCTGTTGATGCCTCC 61.311 60.000 0.00 0.00 0.00 4.30
472 473 0.321919 TCCTGTGCTGTTGATGCCTC 60.322 55.000 0.00 0.00 0.00 4.70
473 474 0.322277 CTCCTGTGCTGTTGATGCCT 60.322 55.000 0.00 0.00 0.00 4.75
474 475 1.930908 GCTCCTGTGCTGTTGATGCC 61.931 60.000 0.00 0.00 0.00 4.40
475 476 1.505353 GCTCCTGTGCTGTTGATGC 59.495 57.895 0.00 0.00 0.00 3.91
476 477 0.322277 AGGCTCCTGTGCTGTTGATG 60.322 55.000 0.00 0.00 0.00 3.07
477 478 0.035630 GAGGCTCCTGTGCTGTTGAT 60.036 55.000 2.15 0.00 0.00 2.57
478 479 1.372683 GAGGCTCCTGTGCTGTTGA 59.627 57.895 2.15 0.00 0.00 3.18
479 480 2.031516 CGAGGCTCCTGTGCTGTTG 61.032 63.158 9.32 0.00 0.00 3.33
480 481 2.345244 CGAGGCTCCTGTGCTGTT 59.655 61.111 9.32 0.00 0.00 3.16
481 482 3.699894 CCGAGGCTCCTGTGCTGT 61.700 66.667 9.32 0.00 0.00 4.40
482 483 2.249413 ATTCCGAGGCTCCTGTGCTG 62.249 60.000 9.32 0.00 0.00 4.41
483 484 0.687757 TATTCCGAGGCTCCTGTGCT 60.688 55.000 9.32 0.00 0.00 4.40
484 485 0.178068 TTATTCCGAGGCTCCTGTGC 59.822 55.000 9.32 0.00 0.00 4.57
485 486 2.168521 TCTTTATTCCGAGGCTCCTGTG 59.831 50.000 9.32 0.00 0.00 3.66
486 487 2.432510 CTCTTTATTCCGAGGCTCCTGT 59.567 50.000 9.32 0.00 0.00 4.00
487 488 2.432510 ACTCTTTATTCCGAGGCTCCTG 59.567 50.000 9.32 0.16 0.00 3.86
488 489 2.753247 ACTCTTTATTCCGAGGCTCCT 58.247 47.619 9.32 0.00 0.00 3.69
489 490 3.545366 AACTCTTTATTCCGAGGCTCC 57.455 47.619 9.32 0.00 0.00 4.70
490 491 7.435305 AGTATAAACTCTTTATTCCGAGGCTC 58.565 38.462 3.87 3.87 37.12 4.70
491 492 7.362802 AGTATAAACTCTTTATTCCGAGGCT 57.637 36.000 0.00 0.00 37.12 4.58
492 493 8.358895 ACTAGTATAAACTCTTTATTCCGAGGC 58.641 37.037 0.00 0.00 37.12 4.70
493 494 9.896263 GACTAGTATAAACTCTTTATTCCGAGG 57.104 37.037 0.00 0.00 37.12 4.63
504 505 9.482175 AGAATTGGTCTGACTAGTATAAACTCT 57.518 33.333 7.85 0.00 34.37 3.24
511 512 9.295825 CTGAGATAGAATTGGTCTGACTAGTAT 57.704 37.037 7.85 0.00 37.12 2.12
530 531 2.887783 GAGGAATCGAGGTGCTGAGATA 59.112 50.000 0.00 0.00 0.00 1.98
533 534 1.110442 AGAGGAATCGAGGTGCTGAG 58.890 55.000 0.00 0.00 0.00 3.35
556 557 7.013369 AGTGTCTTCTCAGTTTATTTTTGGGAC 59.987 37.037 0.00 0.00 0.00 4.46
562 563 6.601332 TGGGAGTGTCTTCTCAGTTTATTTT 58.399 36.000 0.00 0.00 36.30 1.82
563 564 6.187727 TGGGAGTGTCTTCTCAGTTTATTT 57.812 37.500 0.00 0.00 36.30 1.40
607 608 0.926155 CTGGATTGTCGTGAGATGCG 59.074 55.000 0.00 0.00 45.19 4.73
617 914 2.159184 TCGACTGCTGATCTGGATTGTC 60.159 50.000 0.00 3.11 0.00 3.18
634 931 1.517210 GGGGAGCTAGATCCGTCGAC 61.517 65.000 20.45 5.18 40.56 4.20
651 948 2.035066 GCAGAATCCGATGAATTTGGGG 59.965 50.000 0.00 0.00 0.00 4.96
652 949 2.287188 CGCAGAATCCGATGAATTTGGG 60.287 50.000 0.00 0.00 0.00 4.12
656 953 1.331756 GCACGCAGAATCCGATGAATT 59.668 47.619 0.00 0.00 0.00 2.17
726 2061 1.593006 CCATTAGTCAATCACCGCGTC 59.407 52.381 4.92 0.00 0.00 5.19
730 2065 6.288294 TCTTTATCCCATTAGTCAATCACCG 58.712 40.000 0.00 0.00 0.00 4.94
831 2166 5.535753 TCAGATCTTCTTCTGTCACAACA 57.464 39.130 0.00 0.00 43.02 3.33
893 2228 3.031736 ACCCTGTGGTATAGCACTAGTG 58.968 50.000 29.51 18.93 45.45 2.74
935 2270 0.739112 CAGTCTCGGCTTCCAAGAGC 60.739 60.000 0.00 0.00 41.96 4.09
984 2319 3.068691 ATTGCTGCAGCCTGCTGG 61.069 61.111 34.64 14.24 45.31 4.85
1010 2350 4.310022 ACGAAACCCAATAAATCCCTCA 57.690 40.909 0.00 0.00 0.00 3.86
1021 2361 1.104577 GCTCCCACAACGAAACCCAA 61.105 55.000 0.00 0.00 0.00 4.12
1057 2397 2.620112 GCACCAGCAGCACGACAAT 61.620 57.895 0.00 0.00 41.58 2.71
1545 2886 2.038813 TCATCCCTCCAGGTGCGA 59.961 61.111 0.00 0.00 36.75 5.10
1570 2917 0.969149 TGCTCATGAACGTCACCTCT 59.031 50.000 0.00 0.00 0.00 3.69
1644 2991 4.394712 CGAAGCCGAACCCCAGCT 62.395 66.667 0.00 0.00 38.88 4.24
1826 3174 0.250295 CACTCCTGGAAGAACGCCAA 60.250 55.000 0.00 0.00 34.07 4.52
1831 3179 1.891150 TCGTACCACTCCTGGAAGAAC 59.109 52.381 0.00 0.00 40.55 3.01
1843 3191 1.153881 GTTCCTCGCCTCGTACCAC 60.154 63.158 0.00 0.00 0.00 4.16
1870 3218 2.448582 AAACTGGTCGTGCTCCCCA 61.449 57.895 0.00 0.00 0.00 4.96
1888 3236 1.300620 CTTCACCTCGCCGAACACA 60.301 57.895 0.00 0.00 0.00 3.72
1948 3298 0.240145 CGCTGAAGTAGACGGTGTCA 59.760 55.000 0.00 0.00 34.60 3.58
2186 3542 8.825667 TCCTGTTATCCAAAATAAAAACTTGC 57.174 30.769 0.00 0.00 0.00 4.01
2225 3585 4.019681 AGTCCGACCAATTTCATCCAGTAA 60.020 41.667 0.00 0.00 0.00 2.24
2296 3656 4.778534 ATCACCACTGAAAGCAATCTTG 57.221 40.909 0.00 0.00 37.60 3.02
2310 3670 2.423538 GCATGGTTCACCTTATCACCAC 59.576 50.000 0.00 0.00 42.14 4.16
2347 3707 7.599621 TGAATGACCAAGAATGCAGTTAAAATG 59.400 33.333 0.00 0.00 0.00 2.32
2462 3823 4.571919 TCATTTTGGTTCTGGTAGTACCG 58.428 43.478 14.67 9.45 42.58 4.02
2645 4006 5.758296 TCGTATCAGCAGGAAAATTGATACC 59.242 40.000 14.40 0.00 44.67 2.73
2678 4039 5.627735 CGCTGAGACCTAAATATGCCCATAT 60.628 44.000 0.00 0.00 35.63 1.78
2816 4177 2.680339 GTTCCTCTGCAGTATTGGAAGC 59.320 50.000 22.92 16.95 37.46 3.86
2855 4216 7.722285 AGTTGGCAAGACCTTTTATGTAGTTTA 59.278 33.333 0.00 0.00 40.22 2.01
2965 4327 5.852282 ATTTGCAAGAACACCAACTTACT 57.148 34.783 0.00 0.00 0.00 2.24
3101 4463 2.092538 CCCACTGCCAGAGATCTCATTT 60.093 50.000 24.39 0.96 0.00 2.32
3116 4478 2.472029 AGACCTGATTCCTACCCACTG 58.528 52.381 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.