Multiple sequence alignment - TraesCS2A01G050700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G050700 chr2A 100.000 3269 0 0 1 3269 19906345 19903077 0.000000e+00 6037.0
1 TraesCS2A01G050700 chrUn 92.632 2321 133 16 194 2507 24290506 24288217 0.000000e+00 3304.0
2 TraesCS2A01G050700 chr2B 93.063 937 59 4 132 1063 30649051 30649986 0.000000e+00 1365.0
3 TraesCS2A01G050700 chr2B 92.845 587 40 2 2118 2703 30649995 30650580 0.000000e+00 850.0
4 TraesCS2A01G050700 chr2B 94.118 170 10 0 2756 2925 30650580 30650749 3.240000e-65 259.0
5 TraesCS2A01G050700 chr2B 81.447 318 29 19 2960 3269 30650746 30651041 1.960000e-57 233.0
6 TraesCS2A01G050700 chr7B 90.909 55 5 0 1911 1965 733014605 733014551 1.260000e-09 75.0
7 TraesCS2A01G050700 chr7D 85.484 62 7 2 1911 1972 629902626 629902567 2.720000e-06 63.9
8 TraesCS2A01G050700 chr7A 85.455 55 8 0 1912 1966 726007819 726007765 1.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G050700 chr2A 19903077 19906345 3268 True 6037.00 6037 100.00000 1 3269 1 chr2A.!!$R1 3268
1 TraesCS2A01G050700 chrUn 24288217 24290506 2289 True 3304.00 3304 92.63200 194 2507 1 chrUn.!!$R1 2313
2 TraesCS2A01G050700 chr2B 30649051 30651041 1990 False 676.75 1365 90.36825 132 3269 4 chr2B.!!$F1 3137

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.095245 GGATGTGCATGTGTTCGTCG 59.905 55.0 0.0 0.0 0.0 5.12 F
102 103 0.250901 GGGGCAAAACAGAGCAGAGA 60.251 55.0 0.0 0.0 0.0 3.10 F
1333 1345 0.250640 GCCCATCCTCTGGTATGCTG 60.251 60.0 0.0 0.0 44.3 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1083 1095 0.105709 TGATGAGTATCTCCCCGGCA 60.106 55.0 0.0 0.0 34.92 5.69 R
1337 1349 0.108615 GCTGTCTACATCCTGCGTGT 60.109 55.0 0.0 0.0 0.00 4.49 R
2979 2992 0.482446 TCAGTCCTTTTGGGTGGCAT 59.518 50.0 0.0 0.0 40.87 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.425031 CGGGATGTGCATGTGTTCG 59.575 57.895 0.00 0.00 0.00 3.95
19 20 1.298157 CGGGATGTGCATGTGTTCGT 61.298 55.000 0.00 0.00 0.00 3.85
20 21 0.447801 GGGATGTGCATGTGTTCGTC 59.552 55.000 0.00 0.00 0.00 4.20
21 22 0.095245 GGATGTGCATGTGTTCGTCG 59.905 55.000 0.00 0.00 0.00 5.12
22 23 0.790207 GATGTGCATGTGTTCGTCGT 59.210 50.000 0.00 0.00 0.00 4.34
23 24 0.790207 ATGTGCATGTGTTCGTCGTC 59.210 50.000 0.00 0.00 0.00 4.20
24 25 1.127817 GTGCATGTGTTCGTCGTCG 59.872 57.895 0.00 0.00 38.55 5.12
25 26 2.093983 GCATGTGTTCGTCGTCGC 59.906 61.111 0.00 0.00 36.96 5.19
26 27 2.769617 CATGTGTTCGTCGTCGCC 59.230 61.111 0.00 0.00 36.96 5.54
27 28 2.803670 ATGTGTTCGTCGTCGCCG 60.804 61.111 0.00 0.00 36.96 6.46
28 29 3.547249 ATGTGTTCGTCGTCGCCGT 62.547 57.895 0.00 0.00 36.96 5.68
29 30 3.749373 GTGTTCGTCGTCGCCGTG 61.749 66.667 0.00 0.00 36.96 4.94
30 31 4.986587 TGTTCGTCGTCGCCGTGG 62.987 66.667 0.00 0.00 36.96 4.94
44 45 3.683937 GTGGGCATGCTGGCGTTT 61.684 61.111 18.92 0.00 44.78 3.60
45 46 3.372730 TGGGCATGCTGGCGTTTC 61.373 61.111 18.92 0.00 44.78 2.78
46 47 3.064324 GGGCATGCTGGCGTTTCT 61.064 61.111 18.92 0.00 44.78 2.52
47 48 2.180017 GGCATGCTGGCGTTTCTG 59.820 61.111 18.92 0.00 31.79 3.02
48 49 2.505557 GCATGCTGGCGTTTCTGC 60.506 61.111 11.37 0.00 0.00 4.26
49 50 2.986306 GCATGCTGGCGTTTCTGCT 61.986 57.895 11.37 0.00 34.52 4.24
50 51 1.154093 CATGCTGGCGTTTCTGCTG 60.154 57.895 0.00 0.00 34.52 4.41
51 52 2.338015 ATGCTGGCGTTTCTGCTGG 61.338 57.895 0.00 0.00 34.52 4.85
52 53 2.669569 GCTGGCGTTTCTGCTGGA 60.670 61.111 0.00 0.00 34.52 3.86
53 54 2.684843 GCTGGCGTTTCTGCTGGAG 61.685 63.158 0.00 0.00 34.52 3.86
54 55 2.032528 TGGCGTTTCTGCTGGAGG 59.967 61.111 0.00 0.00 34.52 4.30
55 56 2.747855 GGCGTTTCTGCTGGAGGG 60.748 66.667 0.00 0.00 34.52 4.30
56 57 2.747855 GCGTTTCTGCTGGAGGGG 60.748 66.667 0.00 0.00 0.00 4.79
57 58 2.045926 CGTTTCTGCTGGAGGGGG 60.046 66.667 0.00 0.00 0.00 5.40
58 59 2.592993 CGTTTCTGCTGGAGGGGGA 61.593 63.158 0.00 0.00 0.00 4.81
59 60 1.002011 GTTTCTGCTGGAGGGGGAC 60.002 63.158 0.00 0.00 0.00 4.46
60 61 2.592993 TTTCTGCTGGAGGGGGACG 61.593 63.158 0.00 0.00 0.00 4.79
61 62 3.539593 TTCTGCTGGAGGGGGACGA 62.540 63.158 0.00 0.00 0.00 4.20
62 63 2.765807 CTGCTGGAGGGGGACGAT 60.766 66.667 0.00 0.00 0.00 3.73
63 64 3.083349 TGCTGGAGGGGGACGATG 61.083 66.667 0.00 0.00 0.00 3.84
64 65 3.866582 GCTGGAGGGGGACGATGG 61.867 72.222 0.00 0.00 0.00 3.51
65 66 3.866582 CTGGAGGGGGACGATGGC 61.867 72.222 0.00 0.00 0.00 4.40
76 77 4.974468 CGATGGCGTTTGATTCGG 57.026 55.556 0.00 0.00 0.00 4.30
77 78 1.351707 CGATGGCGTTTGATTCGGG 59.648 57.895 0.00 0.00 0.00 5.14
78 79 1.727467 GATGGCGTTTGATTCGGGG 59.273 57.895 0.00 0.00 0.00 5.73
79 80 2.336400 GATGGCGTTTGATTCGGGGC 62.336 60.000 0.00 0.00 0.00 5.80
80 81 4.174129 GGCGTTTGATTCGGGGCG 62.174 66.667 0.00 0.00 0.00 6.13
81 82 3.428282 GCGTTTGATTCGGGGCGT 61.428 61.111 0.00 0.00 0.00 5.68
82 83 2.478746 CGTTTGATTCGGGGCGTG 59.521 61.111 0.00 0.00 0.00 5.34
83 84 2.874751 GTTTGATTCGGGGCGTGG 59.125 61.111 0.00 0.00 0.00 4.94
84 85 2.360600 TTTGATTCGGGGCGTGGG 60.361 61.111 0.00 0.00 0.00 4.61
85 86 3.929334 TTTGATTCGGGGCGTGGGG 62.929 63.158 0.00 0.00 0.00 4.96
94 95 3.989787 GGCGTGGGGGCAAAACAG 61.990 66.667 0.00 0.00 41.77 3.16
95 96 2.909965 GCGTGGGGGCAAAACAGA 60.910 61.111 0.00 0.00 0.00 3.41
96 97 2.919494 GCGTGGGGGCAAAACAGAG 61.919 63.158 0.00 0.00 0.00 3.35
97 98 2.919494 CGTGGGGGCAAAACAGAGC 61.919 63.158 0.00 0.00 0.00 4.09
98 99 1.832167 GTGGGGGCAAAACAGAGCA 60.832 57.895 0.00 0.00 0.00 4.26
99 100 1.531365 TGGGGGCAAAACAGAGCAG 60.531 57.895 0.00 0.00 0.00 4.24
100 101 1.228552 GGGGGCAAAACAGAGCAGA 60.229 57.895 0.00 0.00 0.00 4.26
101 102 1.246737 GGGGGCAAAACAGAGCAGAG 61.247 60.000 0.00 0.00 0.00 3.35
102 103 0.250901 GGGGCAAAACAGAGCAGAGA 60.251 55.000 0.00 0.00 0.00 3.10
103 104 1.163554 GGGCAAAACAGAGCAGAGAG 58.836 55.000 0.00 0.00 0.00 3.20
104 105 1.271054 GGGCAAAACAGAGCAGAGAGA 60.271 52.381 0.00 0.00 0.00 3.10
105 106 2.617532 GGGCAAAACAGAGCAGAGAGAT 60.618 50.000 0.00 0.00 0.00 2.75
106 107 2.419324 GGCAAAACAGAGCAGAGAGATG 59.581 50.000 0.00 0.00 0.00 2.90
107 108 2.419324 GCAAAACAGAGCAGAGAGATGG 59.581 50.000 0.00 0.00 0.00 3.51
108 109 3.008330 CAAAACAGAGCAGAGAGATGGG 58.992 50.000 0.00 0.00 0.00 4.00
109 110 2.244486 AACAGAGCAGAGAGATGGGA 57.756 50.000 0.00 0.00 0.00 4.37
110 111 2.475339 ACAGAGCAGAGAGATGGGAT 57.525 50.000 0.00 0.00 0.00 3.85
111 112 3.609256 ACAGAGCAGAGAGATGGGATA 57.391 47.619 0.00 0.00 0.00 2.59
112 113 4.130719 ACAGAGCAGAGAGATGGGATAT 57.869 45.455 0.00 0.00 0.00 1.63
113 114 3.833650 ACAGAGCAGAGAGATGGGATATG 59.166 47.826 0.00 0.00 0.00 1.78
114 115 2.833338 AGAGCAGAGAGATGGGATATGC 59.167 50.000 0.00 0.00 0.00 3.14
115 116 2.833338 GAGCAGAGAGATGGGATATGCT 59.167 50.000 0.00 0.00 44.65 3.79
116 117 3.249752 AGCAGAGAGATGGGATATGCTT 58.750 45.455 0.00 0.00 39.36 3.91
117 118 3.261390 AGCAGAGAGATGGGATATGCTTC 59.739 47.826 0.00 0.00 39.36 3.86
118 119 3.007723 GCAGAGAGATGGGATATGCTTCA 59.992 47.826 0.00 0.00 0.00 3.02
119 120 4.823157 CAGAGAGATGGGATATGCTTCAG 58.177 47.826 0.00 0.00 0.00 3.02
120 121 3.839490 AGAGAGATGGGATATGCTTCAGG 59.161 47.826 0.00 0.00 0.00 3.86
121 122 3.582208 GAGAGATGGGATATGCTTCAGGT 59.418 47.826 0.00 0.00 0.00 4.00
122 123 3.327172 AGAGATGGGATATGCTTCAGGTG 59.673 47.826 0.00 0.00 0.00 4.00
123 124 3.321039 AGATGGGATATGCTTCAGGTGA 58.679 45.455 0.00 0.00 0.00 4.02
124 125 3.915073 AGATGGGATATGCTTCAGGTGAT 59.085 43.478 0.00 0.00 0.00 3.06
125 126 5.096521 AGATGGGATATGCTTCAGGTGATA 58.903 41.667 0.00 0.00 0.00 2.15
126 127 4.897509 TGGGATATGCTTCAGGTGATAG 57.102 45.455 0.00 0.00 0.00 2.08
127 128 4.492646 TGGGATATGCTTCAGGTGATAGA 58.507 43.478 0.00 0.00 0.00 1.98
128 129 4.529769 TGGGATATGCTTCAGGTGATAGAG 59.470 45.833 0.00 0.00 0.00 2.43
129 130 4.774726 GGGATATGCTTCAGGTGATAGAGA 59.225 45.833 0.00 0.00 0.00 3.10
130 131 5.424895 GGGATATGCTTCAGGTGATAGAGAT 59.575 44.000 0.00 0.00 0.00 2.75
307 313 7.500141 TGAGATGCTGCTATTTGTACTGATTA 58.500 34.615 0.00 0.00 0.00 1.75
321 327 9.632807 TTTGTACTGATTAATGTTATTGTTGCC 57.367 29.630 0.00 0.00 0.00 4.52
325 331 8.065473 ACTGATTAATGTTATTGTTGCCATCA 57.935 30.769 0.00 0.00 0.00 3.07
343 349 3.902261 TCAGATGCACATTGTTGTCAC 57.098 42.857 0.00 0.00 32.34 3.67
355 361 6.860539 CACATTGTTGTCACGGAAAATCATTA 59.139 34.615 0.00 0.00 32.34 1.90
426 433 8.621286 TCAGAAAAACTTGATTCTACTTTGGTC 58.379 33.333 0.00 0.00 34.24 4.02
473 480 5.871396 TGGTGGTAAAGATAGATCTGGAC 57.129 43.478 5.18 0.00 37.19 4.02
477 484 4.954202 TGGTAAAGATAGATCTGGACGTGT 59.046 41.667 5.18 0.00 37.19 4.49
499 506 2.806818 GAGAACGGAAGACCAAAGGAAC 59.193 50.000 0.00 0.00 35.59 3.62
535 542 5.406163 TCCCTCTACATCATACATCCATGT 58.594 41.667 0.00 0.00 44.48 3.21
538 545 6.652481 CCCTCTACATCATACATCCATGTTTC 59.348 42.308 0.00 0.00 41.97 2.78
543 550 5.357878 ACATCATACATCCATGTTTCCACAC 59.642 40.000 0.00 0.00 41.97 3.82
600 607 8.420374 TTTCCTATCTGAATGAACGTGTAATC 57.580 34.615 0.00 0.00 0.00 1.75
642 651 5.005740 TGCTGAATATTCTCACTTGTGCTT 58.994 37.500 16.24 0.00 0.00 3.91
655 664 1.812235 TGTGCTTGCCATACTCACAG 58.188 50.000 0.00 0.00 33.33 3.66
675 684 8.109705 TCACAGATATGTGTAATTGTTGCTTT 57.890 30.769 19.34 0.00 40.45 3.51
692 701 9.809096 TTGTTGCTTTTAACATTTGTGATAGAA 57.191 25.926 0.00 0.00 40.00 2.10
768 779 1.852965 AGGTATATTTGCCCCTGCTGT 59.147 47.619 0.00 0.00 38.71 4.40
783 794 4.925054 CCCTGCTGTCAAAACAATGTTATG 59.075 41.667 0.00 0.00 34.24 1.90
786 797 5.354767 TGCTGTCAAAACAATGTTATGCAA 58.645 33.333 0.00 0.00 34.24 4.08
874 885 1.668751 GTGCGTCTCAAAGGAAACACA 59.331 47.619 0.00 0.00 0.00 3.72
875 886 1.939934 TGCGTCTCAAAGGAAACACAG 59.060 47.619 0.00 0.00 0.00 3.66
882 893 3.117794 TCAAAGGAAACACAGTCGTACG 58.882 45.455 9.53 9.53 0.00 3.67
924 936 4.632538 AGGTGTTTTACTGTTTGTGAGC 57.367 40.909 0.00 0.00 0.00 4.26
943 955 4.079787 TGAGCTGGCCTGTTTCCTATTATT 60.080 41.667 11.69 0.00 0.00 1.40
1053 1065 1.460273 TAGACAGCAGCGGTGTGACA 61.460 55.000 17.07 0.00 44.55 3.58
1080 1092 1.476891 GACGACTTGCCAGAGTCCATA 59.523 52.381 0.00 0.00 42.41 2.74
1083 1095 3.055094 ACGACTTGCCAGAGTCCATAATT 60.055 43.478 0.00 0.00 42.41 1.40
1135 1147 2.434884 ACATCCTTCGCTGCCGTG 60.435 61.111 0.00 0.00 35.54 4.94
1194 1206 1.205893 GACTTCCTTCTCGCTCACCAT 59.794 52.381 0.00 0.00 0.00 3.55
1196 1208 1.205655 CTTCCTTCTCGCTCACCATCA 59.794 52.381 0.00 0.00 0.00 3.07
1223 1235 0.826715 CCCTCGCTCCTTCTCATCAA 59.173 55.000 0.00 0.00 0.00 2.57
1228 1240 2.093288 TCGCTCCTTCTCATCAATTGCT 60.093 45.455 0.00 0.00 0.00 3.91
1239 1251 3.058293 TCATCAATTGCTTCAACCGTGAC 60.058 43.478 0.00 0.00 31.90 3.67
1240 1252 2.293170 TCAATTGCTTCAACCGTGACA 58.707 42.857 0.00 0.00 31.90 3.58
1329 1341 1.843376 CCGGCCCATCCTCTGGTAT 60.843 63.158 0.00 0.00 44.30 2.73
1330 1342 1.372683 CGGCCCATCCTCTGGTATG 59.627 63.158 0.00 0.00 44.30 2.39
1331 1343 1.073897 GGCCCATCCTCTGGTATGC 59.926 63.158 0.00 0.00 44.30 3.14
1332 1344 1.422161 GGCCCATCCTCTGGTATGCT 61.422 60.000 0.00 0.00 44.30 3.79
1333 1345 0.250640 GCCCATCCTCTGGTATGCTG 60.251 60.000 0.00 0.00 44.30 4.41
1334 1346 1.427809 CCCATCCTCTGGTATGCTGA 58.572 55.000 0.00 0.00 44.30 4.26
1335 1347 1.071385 CCCATCCTCTGGTATGCTGAC 59.929 57.143 0.00 0.00 44.30 3.51
1336 1348 1.071385 CCATCCTCTGGTATGCTGACC 59.929 57.143 0.97 0.97 40.49 4.02
1338 1350 1.195115 TCCTCTGGTATGCTGACCAC 58.805 55.000 6.23 0.00 44.79 4.16
1339 1351 0.904649 CCTCTGGTATGCTGACCACA 59.095 55.000 6.23 0.00 44.79 4.17
1352 1364 0.530744 GACCACACGCAGGATGTAGA 59.469 55.000 0.00 0.00 39.31 2.59
1390 1402 2.673200 GCCTGTGATGGCCTCCTCA 61.673 63.158 3.32 1.21 46.82 3.86
1440 1452 3.561310 GCTTCGATATCTGCAATCCAACA 59.439 43.478 0.34 0.00 0.00 3.33
1541 1553 2.535485 TACCAGCATTGCCCGTCCAG 62.535 60.000 4.70 0.00 0.00 3.86
1552 1564 0.384669 CCCGTCCAGAGAATACCGTC 59.615 60.000 0.00 0.00 0.00 4.79
1568 1580 2.425312 ACCGTCTGCTCTACTCAATCTG 59.575 50.000 0.00 0.00 0.00 2.90
1580 1592 4.916041 ACTCAATCTGGACAAGGAATGA 57.084 40.909 0.00 0.00 0.00 2.57
1591 1603 5.012893 GGACAAGGAATGAGAATGGTTTCT 58.987 41.667 0.00 0.00 44.99 2.52
1611 1623 7.332182 GGTTTCTCTTTCACGACTGATTTCTAT 59.668 37.037 0.00 0.00 0.00 1.98
1612 1624 7.818493 TTCTCTTTCACGACTGATTTCTATG 57.182 36.000 0.00 0.00 0.00 2.23
1620 1632 4.035792 ACGACTGATTTCTATGTCCTCTCG 59.964 45.833 0.00 0.00 0.00 4.04
1626 1638 0.924090 TCTATGTCCTCTCGGTGGGA 59.076 55.000 0.00 0.00 0.00 4.37
1691 1703 1.759445 CCTACTGGATGGACTGACCTG 59.241 57.143 0.00 0.00 35.93 4.00
1720 1732 0.172578 TGTATCTGTTCTCCACCGCG 59.827 55.000 0.00 0.00 0.00 6.46
1721 1733 0.527817 GTATCTGTTCTCCACCGCGG 60.528 60.000 26.86 26.86 0.00 6.46
1759 1771 0.879765 AGAACGGTACCACTCTGACG 59.120 55.000 13.54 0.00 0.00 4.35
1779 1791 5.295787 TGACGTCAGCAAAATTCTAGTGTTT 59.704 36.000 15.76 0.00 0.00 2.83
1783 1795 6.494842 GTCAGCAAAATTCTAGTGTTTGACA 58.505 36.000 15.17 0.00 34.80 3.58
1965 1977 1.933021 AGTACCGGATTGACCTGTCA 58.067 50.000 9.46 0.00 37.32 3.58
1968 1980 1.296392 CCGGATTGACCTGTCAGCA 59.704 57.895 0.00 0.00 41.13 4.41
2010 2022 6.349300 GCTTGATCTAAGGGTGAGATGTTTA 58.651 40.000 0.00 0.00 36.87 2.01
2115 2127 1.234821 TTCTGGGACACGTGAAATGC 58.765 50.000 25.01 4.90 0.00 3.56
2116 2128 0.107643 TCTGGGACACGTGAAATGCA 59.892 50.000 25.01 0.00 0.00 3.96
2185 2197 3.748568 GGAGAATATCATTCCACTTCCGC 59.251 47.826 0.00 0.00 0.00 5.54
2214 2226 7.682628 TGGAGATGCAAGATGATTATGTGATA 58.317 34.615 0.00 0.00 0.00 2.15
2247 2259 7.064847 GCAGAAGATGATGATGAGATCCATTAC 59.935 40.741 0.00 0.00 35.17 1.89
2271 2283 6.044754 ACTTCATCTGGCCATATCCATAGAAA 59.955 38.462 5.51 0.00 35.22 2.52
2278 2290 6.349944 CTGGCCATATCCATAGAAAGCATTTC 60.350 42.308 5.51 0.00 44.47 2.17
2353 2365 5.641155 TGCTATGCTATCTAGTAGGTTCCA 58.359 41.667 0.00 0.00 0.00 3.53
2364 2376 6.266080 TCTAGTAGGTTCCATTTAACTGGGA 58.734 40.000 11.61 0.00 36.89 4.37
2369 2381 7.733047 AGTAGGTTCCATTTAACTGGGAATTTT 59.267 33.333 11.61 1.77 42.25 1.82
2370 2382 9.027202 GTAGGTTCCATTTAACTGGGAATTTTA 57.973 33.333 11.61 1.02 42.25 1.52
2384 2396 7.951245 ACTGGGAATTTTAACTGGTAATGGTAA 59.049 33.333 0.00 0.00 0.00 2.85
2420 2432 7.895975 TGAGCTATCTACACATGATAAATGC 57.104 36.000 0.00 0.00 0.00 3.56
2476 2488 2.622942 TGCACTTGTTTCATTCTGGTCC 59.377 45.455 0.00 0.00 0.00 4.46
2479 2491 4.616835 GCACTTGTTTCATTCTGGTCCATC 60.617 45.833 0.00 0.00 0.00 3.51
2542 2554 7.032580 TGTTGATGTCTGTAGTTTGGTTTTTG 58.967 34.615 0.00 0.00 0.00 2.44
2543 2555 7.094162 TGTTGATGTCTGTAGTTTGGTTTTTGA 60.094 33.333 0.00 0.00 0.00 2.69
2553 2565 8.930760 TGTAGTTTGGTTTTTGAAATTGAGTTG 58.069 29.630 0.00 0.00 0.00 3.16
2589 2601 8.648557 TTGTTGTAGCATGCTAGATTAAGTAG 57.351 34.615 27.54 0.00 0.00 2.57
2612 2624 1.376683 TTTCTGAATGCCCCGTCGG 60.377 57.895 3.60 3.60 0.00 4.79
2624 2636 1.310904 CCCGTCGGTTTGAGGAAAAA 58.689 50.000 11.06 0.00 34.34 1.94
2636 2648 6.827641 GTTTGAGGAAAAACCAAAACTCAAC 58.172 36.000 0.00 0.00 42.55 3.18
2640 2652 3.544682 GGAAAAACCAAAACTCAACGACG 59.455 43.478 0.00 0.00 38.79 5.12
2653 2665 7.823149 AACTCAACGACGTATTAGCTTAAAT 57.177 32.000 0.00 0.00 0.00 1.40
2658 2670 9.740239 TCAACGACGTATTAGCTTAAATAAGAT 57.260 29.630 0.00 0.32 35.33 2.40
2682 2694 3.578716 ACATGGTAAGTGTGCTGTAGAGT 59.421 43.478 0.00 0.00 0.00 3.24
2688 2701 6.704493 TGGTAAGTGTGCTGTAGAGTAAAAAG 59.296 38.462 0.00 0.00 0.00 2.27
2702 2715 5.099042 AGTAAAAAGTCGGATAGCATGGT 57.901 39.130 1.62 1.62 0.00 3.55
2703 2716 4.876107 AGTAAAAAGTCGGATAGCATGGTG 59.124 41.667 7.89 0.00 0.00 4.17
2704 2717 3.350219 AAAAGTCGGATAGCATGGTGT 57.650 42.857 7.89 0.00 0.00 4.16
2705 2718 4.481368 AAAAGTCGGATAGCATGGTGTA 57.519 40.909 7.89 0.00 0.00 2.90
2706 2719 4.689612 AAAGTCGGATAGCATGGTGTAT 57.310 40.909 7.89 0.00 0.00 2.29
2707 2720 5.801531 AAAGTCGGATAGCATGGTGTATA 57.198 39.130 7.89 0.00 0.00 1.47
2708 2721 6.360370 AAAGTCGGATAGCATGGTGTATAT 57.640 37.500 7.89 0.00 0.00 0.86
2709 2722 6.360370 AAGTCGGATAGCATGGTGTATATT 57.640 37.500 7.89 0.00 0.00 1.28
2710 2723 6.360370 AGTCGGATAGCATGGTGTATATTT 57.640 37.500 7.89 0.00 0.00 1.40
2711 2724 6.769512 AGTCGGATAGCATGGTGTATATTTT 58.230 36.000 7.89 0.00 0.00 1.82
2712 2725 7.224297 AGTCGGATAGCATGGTGTATATTTTT 58.776 34.615 7.89 0.00 0.00 1.94
2713 2726 7.387948 AGTCGGATAGCATGGTGTATATTTTTC 59.612 37.037 7.89 0.00 0.00 2.29
2714 2727 6.653320 TCGGATAGCATGGTGTATATTTTTCC 59.347 38.462 7.89 0.00 0.00 3.13
2715 2728 6.655003 CGGATAGCATGGTGTATATTTTTCCT 59.345 38.462 7.89 0.00 0.00 3.36
2716 2729 7.174946 CGGATAGCATGGTGTATATTTTTCCTT 59.825 37.037 7.89 0.00 0.00 3.36
2717 2730 8.860088 GGATAGCATGGTGTATATTTTTCCTTT 58.140 33.333 7.89 0.00 0.00 3.11
2718 2731 9.683069 GATAGCATGGTGTATATTTTTCCTTTG 57.317 33.333 7.89 0.00 0.00 2.77
2719 2732 7.716799 AGCATGGTGTATATTTTTCCTTTGA 57.283 32.000 0.00 0.00 0.00 2.69
2720 2733 8.133024 AGCATGGTGTATATTTTTCCTTTGAA 57.867 30.769 0.00 0.00 0.00 2.69
2721 2734 8.592809 AGCATGGTGTATATTTTTCCTTTGAAA 58.407 29.630 0.00 0.00 38.69 2.69
2722 2735 9.213799 GCATGGTGTATATTTTTCCTTTGAAAA 57.786 29.630 0.00 0.00 46.11 2.29
2732 2745 5.350504 TTTCCTTTGAAAAATGTGCCTCA 57.649 34.783 0.00 0.00 37.53 3.86
2733 2746 4.320608 TCCTTTGAAAAATGTGCCTCAC 57.679 40.909 0.00 0.00 34.56 3.51
2734 2747 5.337894 TTTCCTTTGAAAAATGTGCCTCACA 60.338 36.000 1.88 1.88 41.76 3.58
2735 2748 7.344222 TTTCCTTTGAAAAATGTGCCTCACAC 61.344 38.462 1.38 0.00 41.06 3.82
2736 2749 9.414163 TTTCCTTTGAAAAATGTGCCTCACACT 62.414 37.037 1.38 0.00 41.06 3.55
2742 2755 4.368391 GTGCCTCACACTCACCTG 57.632 61.111 0.00 0.00 46.41 4.00
2743 2756 1.748403 GTGCCTCACACTCACCTGA 59.252 57.895 0.00 0.00 46.41 3.86
2744 2757 0.322975 GTGCCTCACACTCACCTGAT 59.677 55.000 0.00 0.00 46.41 2.90
2745 2758 0.610174 TGCCTCACACTCACCTGATC 59.390 55.000 0.00 0.00 0.00 2.92
2746 2759 0.610174 GCCTCACACTCACCTGATCA 59.390 55.000 0.00 0.00 0.00 2.92
2747 2760 1.002430 GCCTCACACTCACCTGATCAA 59.998 52.381 0.00 0.00 0.00 2.57
2748 2761 2.693069 CCTCACACTCACCTGATCAAC 58.307 52.381 0.00 0.00 0.00 3.18
2749 2762 2.037641 CCTCACACTCACCTGATCAACA 59.962 50.000 0.00 0.00 0.00 3.33
2750 2763 3.307269 CCTCACACTCACCTGATCAACAT 60.307 47.826 0.00 0.00 0.00 2.71
2751 2764 4.081476 CCTCACACTCACCTGATCAACATA 60.081 45.833 0.00 0.00 0.00 2.29
2752 2765 5.482006 CTCACACTCACCTGATCAACATAA 58.518 41.667 0.00 0.00 0.00 1.90
2753 2766 6.053632 TCACACTCACCTGATCAACATAAT 57.946 37.500 0.00 0.00 0.00 1.28
2754 2767 6.475504 TCACACTCACCTGATCAACATAATT 58.524 36.000 0.00 0.00 0.00 1.40
2780 2793 9.654663 TTATCTTTCTACTTAGAGTTTTCTGCC 57.345 33.333 0.00 0.00 34.79 4.85
2806 2819 3.248266 GTGACAGCAATGAATTGAAGCC 58.752 45.455 7.21 0.00 40.14 4.35
2809 2822 2.256174 CAGCAATGAATTGAAGCCACG 58.744 47.619 7.21 0.00 40.14 4.94
2840 2853 0.609662 AAAATCCGCAAGCAGCCATT 59.390 45.000 0.00 0.00 41.38 3.16
2861 2874 4.386867 TGTGGAAACCTCACGATCTATC 57.613 45.455 0.00 0.00 37.91 2.08
2862 2875 3.132289 TGTGGAAACCTCACGATCTATCC 59.868 47.826 0.00 0.00 37.91 2.59
2889 2902 8.846943 TGTTAGAGTGGTGGCAATATATATTG 57.153 34.615 25.10 25.10 44.44 1.90
2941 2954 9.950680 TTGTTTTATCTGAACATTCTTTCTCAC 57.049 29.630 0.00 0.00 36.92 3.51
2942 2955 9.342308 TGTTTTATCTGAACATTCTTTCTCACT 57.658 29.630 0.00 0.00 32.44 3.41
2943 2956 9.818796 GTTTTATCTGAACATTCTTTCTCACTC 57.181 33.333 0.00 0.00 0.00 3.51
2944 2957 9.784531 TTTTATCTGAACATTCTTTCTCACTCT 57.215 29.630 0.00 0.00 0.00 3.24
2945 2958 9.784531 TTTATCTGAACATTCTTTCTCACTCTT 57.215 29.630 0.00 0.00 0.00 2.85
2946 2959 7.903995 ATCTGAACATTCTTTCTCACTCTTC 57.096 36.000 0.00 0.00 0.00 2.87
2947 2960 7.060383 TCTGAACATTCTTTCTCACTCTTCT 57.940 36.000 0.00 0.00 0.00 2.85
2948 2961 6.927936 TCTGAACATTCTTTCTCACTCTTCTG 59.072 38.462 0.00 0.00 0.00 3.02
2949 2962 6.586344 TGAACATTCTTTCTCACTCTTCTGT 58.414 36.000 0.00 0.00 0.00 3.41
2950 2963 7.050377 TGAACATTCTTTCTCACTCTTCTGTT 58.950 34.615 0.00 0.00 0.00 3.16
2951 2964 7.554118 TGAACATTCTTTCTCACTCTTCTGTTT 59.446 33.333 0.00 0.00 0.00 2.83
2952 2965 7.872113 ACATTCTTTCTCACTCTTCTGTTTT 57.128 32.000 0.00 0.00 0.00 2.43
2953 2966 7.924940 ACATTCTTTCTCACTCTTCTGTTTTC 58.075 34.615 0.00 0.00 0.00 2.29
2954 2967 7.554118 ACATTCTTTCTCACTCTTCTGTTTTCA 59.446 33.333 0.00 0.00 0.00 2.69
2955 2968 8.566260 CATTCTTTCTCACTCTTCTGTTTTCAT 58.434 33.333 0.00 0.00 0.00 2.57
2956 2969 9.784531 ATTCTTTCTCACTCTTCTGTTTTCATA 57.215 29.630 0.00 0.00 0.00 2.15
2957 2970 8.594881 TCTTTCTCACTCTTCTGTTTTCATAC 57.405 34.615 0.00 0.00 0.00 2.39
2958 2971 8.204160 TCTTTCTCACTCTTCTGTTTTCATACA 58.796 33.333 0.00 0.00 0.00 2.29
2959 2972 8.908786 TTTCTCACTCTTCTGTTTTCATACAT 57.091 30.769 0.00 0.00 0.00 2.29
2960 2973 9.996554 TTTCTCACTCTTCTGTTTTCATACATA 57.003 29.630 0.00 0.00 0.00 2.29
2962 2975 9.809096 TCTCACTCTTCTGTTTTCATACATATC 57.191 33.333 0.00 0.00 0.00 1.63
2975 2988 6.101650 TCATACATATCCTGTGGTCATGAC 57.898 41.667 17.91 17.91 38.92 3.06
2979 2992 4.832823 ACATATCCTGTGGTCATGACGATA 59.167 41.667 19.33 18.15 36.48 2.92
2986 2999 1.202639 TGGTCATGACGATATGCCACC 60.203 52.381 19.33 2.94 32.85 4.61
3001 3014 0.895559 CCACCCAAAAGGACTGAGCC 60.896 60.000 0.00 0.00 39.89 4.70
3065 3078 7.224297 AGTTAGAATAAGTTGGAAGAACTGCA 58.776 34.615 0.00 0.00 0.00 4.41
3073 3086 6.165700 AGTTGGAAGAACTGCATGATTTTT 57.834 33.333 0.00 0.00 0.00 1.94
3077 3090 7.945033 TGGAAGAACTGCATGATTTTTAAAC 57.055 32.000 0.00 0.00 0.00 2.01
3078 3091 7.495901 TGGAAGAACTGCATGATTTTTAAACA 58.504 30.769 0.00 0.00 0.00 2.83
3084 3097 6.154445 ACTGCATGATTTTTAAACAGAGCAG 58.846 36.000 20.72 20.72 44.34 4.24
3089 3102 6.899393 TGATTTTTAAACAGAGCAGGTCAT 57.101 33.333 1.66 0.00 0.00 3.06
3093 3106 5.885230 TTTAAACAGAGCAGGTCATCATG 57.115 39.130 1.66 0.00 0.00 3.07
3112 3125 6.957920 TCATGATGTTCTTTTGTTTCTCCA 57.042 33.333 0.00 0.00 0.00 3.86
3114 3127 7.428020 TCATGATGTTCTTTTGTTTCTCCAAG 58.572 34.615 0.00 0.00 0.00 3.61
3117 3130 7.483307 TGATGTTCTTTTGTTTCTCCAAGAAG 58.517 34.615 0.00 0.00 36.23 2.85
3118 3131 6.834168 TGTTCTTTTGTTTCTCCAAGAAGT 57.166 33.333 0.00 0.00 36.23 3.01
3119 3132 6.620678 TGTTCTTTTGTTTCTCCAAGAAGTG 58.379 36.000 0.00 0.00 36.23 3.16
3120 3133 6.208599 TGTTCTTTTGTTTCTCCAAGAAGTGT 59.791 34.615 0.00 0.00 36.23 3.55
3122 3135 6.180472 TCTTTTGTTTCTCCAAGAAGTGTCT 58.820 36.000 0.00 0.00 35.37 3.41
3124 3137 6.436843 TTTGTTTCTCCAAGAAGTGTCTTC 57.563 37.500 1.76 1.76 42.45 2.87
3126 3139 5.745227 TGTTTCTCCAAGAAGTGTCTTCTT 58.255 37.500 16.02 16.02 42.45 2.52
3127 3140 6.180472 TGTTTCTCCAAGAAGTGTCTTCTTT 58.820 36.000 18.28 5.58 42.45 2.52
3128 3141 7.335627 TGTTTCTCCAAGAAGTGTCTTCTTTA 58.664 34.615 18.28 10.97 42.45 1.85
3130 3143 9.490379 GTTTCTCCAAGAAGTGTCTTCTTTATA 57.510 33.333 18.28 8.85 42.45 0.98
3132 3145 9.490379 TTCTCCAAGAAGTGTCTTCTTTATAAC 57.510 33.333 18.28 0.00 42.45 1.89
3133 3146 8.871125 TCTCCAAGAAGTGTCTTCTTTATAACT 58.129 33.333 18.28 0.00 42.45 2.24
3134 3147 9.495572 CTCCAAGAAGTGTCTTCTTTATAACTT 57.504 33.333 18.28 0.00 42.45 2.66
3139 3152 9.713713 AGAAGTGTCTTCTTTATAACTTTCCTC 57.286 33.333 6.24 0.00 0.00 3.71
3140 3153 9.490379 GAAGTGTCTTCTTTATAACTTTCCTCA 57.510 33.333 2.71 0.00 0.00 3.86
3142 3155 9.442047 AGTGTCTTCTTTATAACTTTCCTCATG 57.558 33.333 0.00 0.00 0.00 3.07
3143 3156 9.220767 GTGTCTTCTTTATAACTTTCCTCATGT 57.779 33.333 0.00 0.00 0.00 3.21
3146 3159 9.886132 TCTTCTTTATAACTTTCCTCATGTACC 57.114 33.333 0.00 0.00 0.00 3.34
3147 3160 9.667107 CTTCTTTATAACTTTCCTCATGTACCA 57.333 33.333 0.00 0.00 0.00 3.25
3149 3162 9.832445 TCTTTATAACTTTCCTCATGTACCATC 57.168 33.333 0.00 0.00 0.00 3.51
3150 3163 9.838339 CTTTATAACTTTCCTCATGTACCATCT 57.162 33.333 0.00 0.00 0.00 2.90
3151 3164 9.613428 TTTATAACTTTCCTCATGTACCATCTG 57.387 33.333 0.00 0.00 0.00 2.90
3152 3165 5.505181 AACTTTCCTCATGTACCATCTGT 57.495 39.130 0.00 0.00 0.00 3.41
3153 3166 5.091261 ACTTTCCTCATGTACCATCTGTC 57.909 43.478 0.00 0.00 0.00 3.51
3154 3167 4.532126 ACTTTCCTCATGTACCATCTGTCA 59.468 41.667 0.00 0.00 0.00 3.58
3155 3168 5.190528 ACTTTCCTCATGTACCATCTGTCAT 59.809 40.000 0.00 0.00 0.00 3.06
3156 3169 5.698741 TTCCTCATGTACCATCTGTCATT 57.301 39.130 0.00 0.00 0.00 2.57
3157 3170 5.698741 TCCTCATGTACCATCTGTCATTT 57.301 39.130 0.00 0.00 0.00 2.32
3158 3171 6.065976 TCCTCATGTACCATCTGTCATTTT 57.934 37.500 0.00 0.00 0.00 1.82
3159 3172 5.882000 TCCTCATGTACCATCTGTCATTTTG 59.118 40.000 0.00 0.00 0.00 2.44
3172 3185 8.860128 CATCTGTCATTTTGTTTCATGATCTTG 58.140 33.333 0.00 2.18 32.07 3.02
3176 3189 7.863877 TGTCATTTTGTTTCATGATCTTGAGTG 59.136 33.333 10.81 4.58 32.07 3.51
3190 3203 8.530804 TGATCTTGAGTGAGAATTCTGATAGA 57.469 34.615 14.00 7.02 0.00 1.98
3191 3204 8.631797 TGATCTTGAGTGAGAATTCTGATAGAG 58.368 37.037 14.00 4.09 0.00 2.43
3193 3206 5.528043 TGAGTGAGAATTCTGATAGAGGC 57.472 43.478 14.00 0.00 0.00 4.70
3194 3207 4.958581 TGAGTGAGAATTCTGATAGAGGCA 59.041 41.667 14.00 0.00 0.00 4.75
3195 3208 5.163468 TGAGTGAGAATTCTGATAGAGGCAC 60.163 44.000 14.00 11.64 0.00 5.01
3196 3209 4.100808 AGTGAGAATTCTGATAGAGGCACC 59.899 45.833 14.00 0.00 0.00 5.01
3197 3210 4.033009 TGAGAATTCTGATAGAGGCACCA 58.967 43.478 14.00 0.00 0.00 4.17
3198 3211 4.657504 TGAGAATTCTGATAGAGGCACCAT 59.342 41.667 14.00 0.00 0.00 3.55
3219 3249 1.166531 AGCTGGGCAAGTGAACGTTC 61.167 55.000 21.42 21.42 0.00 3.95
3221 3251 1.308998 CTGGGCAAGTGAACGTTCTT 58.691 50.000 27.32 12.90 0.00 2.52
3228 3258 1.157870 AGTGAACGTTCTTGCCCACG 61.158 55.000 27.32 0.00 42.29 4.94
3262 3292 0.590682 AAATCACGCGAACACATGCA 59.409 45.000 15.93 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.298157 ACGAACACATGCACATCCCG 61.298 55.000 0.00 0.00 0.00 5.14
1 2 0.447801 GACGAACACATGCACATCCC 59.552 55.000 0.00 0.00 0.00 3.85
2 3 0.095245 CGACGAACACATGCACATCC 59.905 55.000 0.00 0.00 0.00 3.51
3 4 0.790207 ACGACGAACACATGCACATC 59.210 50.000 0.00 0.00 0.00 3.06
4 5 0.790207 GACGACGAACACATGCACAT 59.210 50.000 0.00 0.00 0.00 3.21
5 6 1.544777 CGACGACGAACACATGCACA 61.545 55.000 0.00 0.00 42.66 4.57
6 7 1.127817 CGACGACGAACACATGCAC 59.872 57.895 0.00 0.00 42.66 4.57
7 8 2.653967 GCGACGACGAACACATGCA 61.654 57.895 12.29 0.00 42.66 3.96
8 9 2.093983 GCGACGACGAACACATGC 59.906 61.111 12.29 0.00 42.66 4.06
9 10 2.769617 GGCGACGACGAACACATG 59.230 61.111 12.29 0.00 42.66 3.21
27 28 3.631487 GAAACGCCAGCATGCCCAC 62.631 63.158 15.66 2.38 31.97 4.61
28 29 3.372730 GAAACGCCAGCATGCCCA 61.373 61.111 15.66 0.00 31.97 5.36
29 30 3.064324 AGAAACGCCAGCATGCCC 61.064 61.111 15.66 1.99 31.97 5.36
30 31 2.180017 CAGAAACGCCAGCATGCC 59.820 61.111 15.66 0.00 31.97 4.40
31 32 2.505557 GCAGAAACGCCAGCATGC 60.506 61.111 10.51 10.51 31.97 4.06
32 33 1.154093 CAGCAGAAACGCCAGCATG 60.154 57.895 0.00 0.00 0.00 4.06
33 34 2.338015 CCAGCAGAAACGCCAGCAT 61.338 57.895 0.00 0.00 0.00 3.79
34 35 2.979676 CCAGCAGAAACGCCAGCA 60.980 61.111 0.00 0.00 0.00 4.41
35 36 2.669569 TCCAGCAGAAACGCCAGC 60.670 61.111 0.00 0.00 0.00 4.85
36 37 2.037136 CCTCCAGCAGAAACGCCAG 61.037 63.158 0.00 0.00 0.00 4.85
37 38 2.032528 CCTCCAGCAGAAACGCCA 59.967 61.111 0.00 0.00 0.00 5.69
38 39 2.747855 CCCTCCAGCAGAAACGCC 60.748 66.667 0.00 0.00 0.00 5.68
39 40 2.747855 CCCCTCCAGCAGAAACGC 60.748 66.667 0.00 0.00 0.00 4.84
40 41 2.045926 CCCCCTCCAGCAGAAACG 60.046 66.667 0.00 0.00 0.00 3.60
41 42 1.002011 GTCCCCCTCCAGCAGAAAC 60.002 63.158 0.00 0.00 0.00 2.78
42 43 2.592993 CGTCCCCCTCCAGCAGAAA 61.593 63.158 0.00 0.00 0.00 2.52
43 44 2.822643 ATCGTCCCCCTCCAGCAGAA 62.823 60.000 0.00 0.00 0.00 3.02
44 45 3.317436 ATCGTCCCCCTCCAGCAGA 62.317 63.158 0.00 0.00 0.00 4.26
45 46 2.765807 ATCGTCCCCCTCCAGCAG 60.766 66.667 0.00 0.00 0.00 4.24
46 47 3.083349 CATCGTCCCCCTCCAGCA 61.083 66.667 0.00 0.00 0.00 4.41
47 48 3.866582 CCATCGTCCCCCTCCAGC 61.867 72.222 0.00 0.00 0.00 4.85
48 49 3.866582 GCCATCGTCCCCCTCCAG 61.867 72.222 0.00 0.00 0.00 3.86
59 60 1.351707 CCCGAATCAAACGCCATCG 59.648 57.895 0.00 0.00 42.43 3.84
60 61 1.727467 CCCCGAATCAAACGCCATC 59.273 57.895 0.00 0.00 0.00 3.51
61 62 2.414785 GCCCCGAATCAAACGCCAT 61.415 57.895 0.00 0.00 0.00 4.40
62 63 3.059386 GCCCCGAATCAAACGCCA 61.059 61.111 0.00 0.00 0.00 5.69
63 64 4.174129 CGCCCCGAATCAAACGCC 62.174 66.667 0.00 0.00 0.00 5.68
64 65 3.428282 ACGCCCCGAATCAAACGC 61.428 61.111 0.00 0.00 0.00 4.84
65 66 2.478746 CACGCCCCGAATCAAACG 59.521 61.111 0.00 0.00 0.00 3.60
66 67 2.696759 CCCACGCCCCGAATCAAAC 61.697 63.158 0.00 0.00 0.00 2.93
67 68 2.360600 CCCACGCCCCGAATCAAA 60.361 61.111 0.00 0.00 0.00 2.69
68 69 4.418328 CCCCACGCCCCGAATCAA 62.418 66.667 0.00 0.00 0.00 2.57
77 78 3.989787 CTGTTTTGCCCCCACGCC 61.990 66.667 0.00 0.00 0.00 5.68
78 79 2.909965 TCTGTTTTGCCCCCACGC 60.910 61.111 0.00 0.00 0.00 5.34
79 80 2.919494 GCTCTGTTTTGCCCCCACG 61.919 63.158 0.00 0.00 0.00 4.94
80 81 1.809567 CTGCTCTGTTTTGCCCCCAC 61.810 60.000 0.00 0.00 0.00 4.61
81 82 1.531365 CTGCTCTGTTTTGCCCCCA 60.531 57.895 0.00 0.00 0.00 4.96
82 83 1.228552 TCTGCTCTGTTTTGCCCCC 60.229 57.895 0.00 0.00 0.00 5.40
83 84 0.250901 TCTCTGCTCTGTTTTGCCCC 60.251 55.000 0.00 0.00 0.00 5.80
84 85 1.163554 CTCTCTGCTCTGTTTTGCCC 58.836 55.000 0.00 0.00 0.00 5.36
85 86 2.175878 TCTCTCTGCTCTGTTTTGCC 57.824 50.000 0.00 0.00 0.00 4.52
86 87 2.419324 CCATCTCTCTGCTCTGTTTTGC 59.581 50.000 0.00 0.00 0.00 3.68
87 88 3.008330 CCCATCTCTCTGCTCTGTTTTG 58.992 50.000 0.00 0.00 0.00 2.44
88 89 2.909006 TCCCATCTCTCTGCTCTGTTTT 59.091 45.455 0.00 0.00 0.00 2.43
89 90 2.544721 TCCCATCTCTCTGCTCTGTTT 58.455 47.619 0.00 0.00 0.00 2.83
90 91 2.244486 TCCCATCTCTCTGCTCTGTT 57.756 50.000 0.00 0.00 0.00 3.16
91 92 2.475339 ATCCCATCTCTCTGCTCTGT 57.525 50.000 0.00 0.00 0.00 3.41
92 93 3.368635 GCATATCCCATCTCTCTGCTCTG 60.369 52.174 0.00 0.00 0.00 3.35
93 94 2.833338 GCATATCCCATCTCTCTGCTCT 59.167 50.000 0.00 0.00 0.00 4.09
94 95 2.833338 AGCATATCCCATCTCTCTGCTC 59.167 50.000 0.00 0.00 33.47 4.26
95 96 2.905246 AGCATATCCCATCTCTCTGCT 58.095 47.619 0.00 0.00 33.89 4.24
96 97 3.007723 TGAAGCATATCCCATCTCTCTGC 59.992 47.826 0.00 0.00 0.00 4.26
97 98 4.322877 CCTGAAGCATATCCCATCTCTCTG 60.323 50.000 0.00 0.00 0.00 3.35
98 99 3.839490 CCTGAAGCATATCCCATCTCTCT 59.161 47.826 0.00 0.00 0.00 3.10
99 100 3.582208 ACCTGAAGCATATCCCATCTCTC 59.418 47.826 0.00 0.00 0.00 3.20
100 101 3.327172 CACCTGAAGCATATCCCATCTCT 59.673 47.826 0.00 0.00 0.00 3.10
101 102 3.326006 TCACCTGAAGCATATCCCATCTC 59.674 47.826 0.00 0.00 0.00 2.75
102 103 3.321039 TCACCTGAAGCATATCCCATCT 58.679 45.455 0.00 0.00 0.00 2.90
103 104 3.777106 TCACCTGAAGCATATCCCATC 57.223 47.619 0.00 0.00 0.00 3.51
104 105 5.096521 TCTATCACCTGAAGCATATCCCAT 58.903 41.667 0.00 0.00 0.00 4.00
105 106 4.492646 TCTATCACCTGAAGCATATCCCA 58.507 43.478 0.00 0.00 0.00 4.37
106 107 4.774726 TCTCTATCACCTGAAGCATATCCC 59.225 45.833 0.00 0.00 0.00 3.85
107 108 5.991933 TCTCTATCACCTGAAGCATATCC 57.008 43.478 0.00 0.00 0.00 2.59
108 109 7.609960 TCAATCTCTATCACCTGAAGCATATC 58.390 38.462 0.00 0.00 0.00 1.63
109 110 7.454066 TCTCAATCTCTATCACCTGAAGCATAT 59.546 37.037 0.00 0.00 0.00 1.78
110 111 6.779539 TCTCAATCTCTATCACCTGAAGCATA 59.220 38.462 0.00 0.00 0.00 3.14
111 112 5.601729 TCTCAATCTCTATCACCTGAAGCAT 59.398 40.000 0.00 0.00 0.00 3.79
112 113 4.958581 TCTCAATCTCTATCACCTGAAGCA 59.041 41.667 0.00 0.00 0.00 3.91
113 114 5.301551 TCTCTCAATCTCTATCACCTGAAGC 59.698 44.000 0.00 0.00 0.00 3.86
114 115 6.957920 TCTCTCAATCTCTATCACCTGAAG 57.042 41.667 0.00 0.00 0.00 3.02
115 116 6.239261 GCATCTCTCAATCTCTATCACCTGAA 60.239 42.308 0.00 0.00 0.00 3.02
116 117 5.243507 GCATCTCTCAATCTCTATCACCTGA 59.756 44.000 0.00 0.00 0.00 3.86
117 118 5.244402 AGCATCTCTCAATCTCTATCACCTG 59.756 44.000 0.00 0.00 0.00 4.00
118 119 5.396485 AGCATCTCTCAATCTCTATCACCT 58.604 41.667 0.00 0.00 0.00 4.00
119 120 5.726980 AGCATCTCTCAATCTCTATCACC 57.273 43.478 0.00 0.00 0.00 4.02
120 121 5.858049 CGAAGCATCTCTCAATCTCTATCAC 59.142 44.000 0.00 0.00 0.00 3.06
121 122 5.048154 CCGAAGCATCTCTCAATCTCTATCA 60.048 44.000 0.00 0.00 0.00 2.15
122 123 5.401550 CCGAAGCATCTCTCAATCTCTATC 58.598 45.833 0.00 0.00 0.00 2.08
123 124 4.321899 GCCGAAGCATCTCTCAATCTCTAT 60.322 45.833 0.00 0.00 39.53 1.98
124 125 3.005261 GCCGAAGCATCTCTCAATCTCTA 59.995 47.826 0.00 0.00 39.53 2.43
125 126 2.224018 GCCGAAGCATCTCTCAATCTCT 60.224 50.000 0.00 0.00 39.53 3.10
126 127 2.134346 GCCGAAGCATCTCTCAATCTC 58.866 52.381 0.00 0.00 39.53 2.75
127 128 1.761784 AGCCGAAGCATCTCTCAATCT 59.238 47.619 0.00 0.00 43.56 2.40
128 129 2.237393 AGCCGAAGCATCTCTCAATC 57.763 50.000 0.00 0.00 43.56 2.67
129 130 2.559440 GAAGCCGAAGCATCTCTCAAT 58.441 47.619 0.00 0.00 43.56 2.57
130 131 1.737029 CGAAGCCGAAGCATCTCTCAA 60.737 52.381 0.00 0.00 43.56 3.02
321 327 4.163552 GTGACAACAATGTGCATCTGATG 58.836 43.478 13.26 13.26 40.74 3.07
325 331 1.536766 CCGTGACAACAATGTGCATCT 59.463 47.619 0.00 0.00 40.74 2.90
343 349 6.183360 ACAGCAGTGAATCTAATGATTTTCCG 60.183 38.462 0.00 0.00 42.43 4.30
355 361 3.769739 TGTTGGTACAGCAGTGAATCT 57.230 42.857 0.00 0.00 46.59 2.40
473 480 0.031585 TGGTCTTCCGTTCTCACACG 59.968 55.000 0.00 0.00 40.02 4.49
477 484 2.043992 TCCTTTGGTCTTCCGTTCTCA 58.956 47.619 0.00 0.00 36.30 3.27
485 492 2.515854 GGAAGGGTTCCTTTGGTCTTC 58.484 52.381 0.34 0.00 44.82 2.87
499 506 2.188818 AGAGGGATGAGAAGGAAGGG 57.811 55.000 0.00 0.00 0.00 3.95
535 542 9.613428 CTACATTTAGATGATAAGGTGTGGAAA 57.387 33.333 0.00 0.00 36.73 3.13
538 545 8.964476 AACTACATTTAGATGATAAGGTGTGG 57.036 34.615 0.00 0.00 36.73 4.17
600 607 3.508793 AGCAATTTCCACTCCATTCACAG 59.491 43.478 0.00 0.00 0.00 3.66
692 701 4.142359 ACGCAAGAGAACGATAGAGAATGT 60.142 41.667 0.00 0.00 43.62 2.71
732 743 7.944729 AATATACCTGCAGAGAAAACAATGT 57.055 32.000 17.39 2.52 0.00 2.71
783 794 7.061094 GCTCATGTGACAGTAAAAGTAAATTGC 59.939 37.037 0.00 0.00 0.00 3.56
786 797 7.744087 TGCTCATGTGACAGTAAAAGTAAAT 57.256 32.000 0.00 0.00 0.00 1.40
874 885 2.825861 AATTCCACCAACGTACGACT 57.174 45.000 24.41 5.45 0.00 4.18
875 886 3.883631 AAAATTCCACCAACGTACGAC 57.116 42.857 24.41 0.00 0.00 4.34
882 893 5.762711 ACCTAAATGCAAAAATTCCACCAAC 59.237 36.000 0.00 0.00 0.00 3.77
924 936 7.283329 AGTAGAAATAATAGGAAACAGGCCAG 58.717 38.462 5.01 0.00 0.00 4.85
1041 1053 1.373497 GAGGACTGTCACACCGCTG 60.373 63.158 10.38 0.00 0.00 5.18
1080 1092 1.507140 TGAGTATCTCCCCGGCAATT 58.493 50.000 0.00 0.00 34.92 2.32
1083 1095 0.105709 TGATGAGTATCTCCCCGGCA 60.106 55.000 0.00 0.00 34.92 5.69
1135 1147 0.526096 CACCACAACTTGCACACAGC 60.526 55.000 0.00 0.00 45.96 4.40
1223 1235 2.020720 TGTTGTCACGGTTGAAGCAAT 58.979 42.857 0.00 0.00 31.90 3.56
1228 1240 3.559655 CAGAATCTGTTGTCACGGTTGAA 59.440 43.478 1.31 0.00 31.90 2.69
1239 1251 0.798776 GGCCGTCACAGAATCTGTTG 59.201 55.000 13.99 9.51 42.59 3.33
1240 1252 0.396435 TGGCCGTCACAGAATCTGTT 59.604 50.000 13.99 0.00 42.59 3.16
1291 1303 4.143333 GAGCTTGCGGCCGGTAGA 62.143 66.667 29.38 0.00 43.05 2.59
1329 1341 2.882677 ATCCTGCGTGTGGTCAGCA 61.883 57.895 0.00 0.00 39.25 4.41
1330 1342 2.046892 ATCCTGCGTGTGGTCAGC 60.047 61.111 0.00 0.00 0.00 4.26
1331 1343 0.246360 TACATCCTGCGTGTGGTCAG 59.754 55.000 0.00 0.00 0.00 3.51
1332 1344 0.246360 CTACATCCTGCGTGTGGTCA 59.754 55.000 0.00 0.00 0.00 4.02
1333 1345 0.530744 TCTACATCCTGCGTGTGGTC 59.469 55.000 0.00 0.00 31.00 4.02
1334 1346 0.246635 GTCTACATCCTGCGTGTGGT 59.753 55.000 0.00 0.00 31.00 4.16
1335 1347 0.246360 TGTCTACATCCTGCGTGTGG 59.754 55.000 0.00 0.00 0.00 4.17
1336 1348 1.633561 CTGTCTACATCCTGCGTGTG 58.366 55.000 0.00 0.00 0.00 3.82
1337 1349 0.108615 GCTGTCTACATCCTGCGTGT 60.109 55.000 0.00 0.00 0.00 4.49
1338 1350 0.807667 GGCTGTCTACATCCTGCGTG 60.808 60.000 0.00 0.00 0.00 5.34
1339 1351 0.972983 AGGCTGTCTACATCCTGCGT 60.973 55.000 4.74 0.00 40.64 5.24
1352 1364 3.543537 CCTGGATAGCGAGGCTGT 58.456 61.111 0.00 0.00 40.10 4.40
1390 1402 6.582636 TGCCATTATCTTTGTAAGAGACGAT 58.417 36.000 0.00 0.00 41.61 3.73
1541 1553 3.878103 TGAGTAGAGCAGACGGTATTCTC 59.122 47.826 0.00 0.00 0.00 2.87
1552 1564 4.431809 CTTGTCCAGATTGAGTAGAGCAG 58.568 47.826 0.00 0.00 0.00 4.24
1568 1580 5.012893 AGAAACCATTCTCATTCCTTGTCC 58.987 41.667 0.00 0.00 42.26 4.02
1580 1592 6.742644 ATCAGTCGTGAAAGAGAAACCATTCT 60.743 38.462 0.00 0.00 41.63 2.40
1591 1603 6.071334 AGGACATAGAAATCAGTCGTGAAAGA 60.071 38.462 0.00 0.00 35.88 2.52
1620 1632 1.622811 CTAGGCTCATCAGATCCCACC 59.377 57.143 0.00 0.00 30.10 4.61
1626 1638 2.770748 GGGCCTAGGCTCATCAGAT 58.229 57.895 32.18 0.00 42.14 2.90
1670 1682 1.362932 AGGTCAGTCCATCCAGTAGGT 59.637 52.381 0.00 0.00 39.02 3.08
1673 1685 2.623418 ACAGGTCAGTCCATCCAGTA 57.377 50.000 0.00 0.00 39.02 2.74
1691 1703 6.472808 GTGGAGAACAGATACATTAGACGAAC 59.527 42.308 0.00 0.00 0.00 3.95
1720 1732 4.764771 TCCCCAATGCAGGCTGCC 62.765 66.667 34.58 18.22 44.23 4.85
1721 1733 2.556840 TAGTCCCCAATGCAGGCTGC 62.557 60.000 31.91 31.91 45.29 5.25
1759 1771 6.414987 GTGTCAAACACTAGAATTTTGCTGAC 59.585 38.462 0.00 1.97 45.27 3.51
1779 1791 3.690475 AATGTCTCATCAGCAGTGTCA 57.310 42.857 0.00 0.00 0.00 3.58
1783 1795 4.511527 CACCTAAATGTCTCATCAGCAGT 58.488 43.478 0.00 0.00 0.00 4.40
1791 1803 3.118261 GGCTCATCCACCTAAATGTCTCA 60.118 47.826 0.00 0.00 34.01 3.27
1965 1977 1.609501 TAGGGACGCCTTCAGTGCT 60.610 57.895 0.00 0.00 0.00 4.40
1968 1980 2.348888 CGGTAGGGACGCCTTCAGT 61.349 63.158 0.00 0.00 0.00 3.41
2115 2127 1.517242 GGCTTTCCTCACACTCACTG 58.483 55.000 0.00 0.00 0.00 3.66
2116 2128 0.034059 CGGCTTTCCTCACACTCACT 59.966 55.000 0.00 0.00 0.00 3.41
2214 2226 4.163649 TCATCATCATCTTCTGCTTCTGGT 59.836 41.667 0.00 0.00 0.00 4.00
2247 2259 5.688814 TCTATGGATATGGCCAGATGAAG 57.311 43.478 19.70 9.30 42.15 3.02
2271 2283 8.223330 AGGATTTCAGGATATTACAGAAATGCT 58.777 33.333 18.17 18.17 45.88 3.79
2278 2290 6.183361 TGGACCAGGATTTCAGGATATTACAG 60.183 42.308 0.00 0.00 0.00 2.74
2329 2341 5.712446 TGGAACCTACTAGATAGCATAGCAG 59.288 44.000 0.00 0.00 0.00 4.24
2369 2381 7.172342 AGCAAAGATGTTACCATTACCAGTTA 58.828 34.615 0.00 0.00 0.00 2.24
2370 2382 6.010219 AGCAAAGATGTTACCATTACCAGTT 58.990 36.000 0.00 0.00 0.00 3.16
2379 2391 5.102953 AGCTCATAGCAAAGATGTTACCA 57.897 39.130 1.22 0.00 45.56 3.25
2384 2396 7.151308 GTGTAGATAGCTCATAGCAAAGATGT 58.849 38.462 0.00 0.00 45.56 3.06
2397 2409 6.035435 CGGCATTTATCATGTGTAGATAGCTC 59.965 42.308 0.00 0.00 30.32 4.09
2476 2488 3.559655 TGAGATCGGTAAAATTGGCGATG 59.440 43.478 0.00 0.00 0.00 3.84
2479 2491 4.552166 ATTGAGATCGGTAAAATTGGCG 57.448 40.909 0.00 0.00 0.00 5.69
2553 2565 6.475402 AGCATGCTACAACAAACAAACTTAAC 59.525 34.615 21.21 0.00 0.00 2.01
2589 2601 1.339151 ACGGGGCATTCAGAAACTCTC 60.339 52.381 0.00 0.00 0.00 3.20
2612 2624 6.400621 CGTTGAGTTTTGGTTTTTCCTCAAAC 60.401 38.462 0.00 0.00 39.73 2.93
2624 2636 4.151157 GCTAATACGTCGTTGAGTTTTGGT 59.849 41.667 1.78 0.00 0.00 3.67
2627 2639 7.642071 TTAAGCTAATACGTCGTTGAGTTTT 57.358 32.000 1.78 1.65 0.00 2.43
2653 2665 6.707290 ACAGCACACTTACCATGTTATCTTA 58.293 36.000 0.00 0.00 0.00 2.10
2658 2670 5.245301 ACTCTACAGCACACTTACCATGTTA 59.755 40.000 0.00 0.00 0.00 2.41
2663 2675 5.794726 TTTACTCTACAGCACACTTACCA 57.205 39.130 0.00 0.00 0.00 3.25
2682 2694 4.839121 ACACCATGCTATCCGACTTTTTA 58.161 39.130 0.00 0.00 0.00 1.52
2688 2701 7.360946 GGAAAAATATACACCATGCTATCCGAC 60.361 40.741 0.00 0.00 0.00 4.79
2708 2721 8.225403 TGTGAGGCACATTTTTCAAAGGAAAAA 61.225 33.333 15.21 15.21 46.38 1.94
2709 2722 5.584251 GTGAGGCACATTTTTCAAAGGAAAA 59.416 36.000 0.00 0.00 41.03 2.29
2710 2723 5.115480 GTGAGGCACATTTTTCAAAGGAAA 58.885 37.500 0.00 0.00 36.47 3.13
2711 2724 4.161189 TGTGAGGCACATTTTTCAAAGGAA 59.839 37.500 0.00 0.00 39.62 3.36
2712 2725 3.703556 TGTGAGGCACATTTTTCAAAGGA 59.296 39.130 0.00 0.00 39.62 3.36
2713 2726 3.803778 GTGTGAGGCACATTTTTCAAAGG 59.196 43.478 3.36 0.00 46.32 3.11
2726 2739 0.610174 GATCAGGTGAGTGTGAGGCA 59.390 55.000 0.00 0.00 0.00 4.75
2727 2740 0.610174 TGATCAGGTGAGTGTGAGGC 59.390 55.000 0.00 0.00 0.00 4.70
2728 2741 2.037641 TGTTGATCAGGTGAGTGTGAGG 59.962 50.000 0.00 0.00 0.00 3.86
2729 2742 3.391506 TGTTGATCAGGTGAGTGTGAG 57.608 47.619 0.00 0.00 0.00 3.51
2730 2743 5.482163 TTATGTTGATCAGGTGAGTGTGA 57.518 39.130 0.00 0.00 0.00 3.58
2731 2744 6.748333 AATTATGTTGATCAGGTGAGTGTG 57.252 37.500 0.00 0.00 0.00 3.82
2732 2745 9.113838 GATAAATTATGTTGATCAGGTGAGTGT 57.886 33.333 0.00 0.00 0.00 3.55
2733 2746 9.334947 AGATAAATTATGTTGATCAGGTGAGTG 57.665 33.333 0.00 0.00 0.00 3.51
2734 2747 9.911788 AAGATAAATTATGTTGATCAGGTGAGT 57.088 29.630 0.00 0.00 0.00 3.41
2754 2767 9.654663 GGCAGAAAACTCTAAGTAGAAAGATAA 57.345 33.333 0.00 0.00 0.00 1.75
2768 2781 2.050144 TCACCTCAGGCAGAAAACTCT 58.950 47.619 0.00 0.00 0.00 3.24
2780 2793 3.754850 TCAATTCATTGCTGTCACCTCAG 59.245 43.478 0.00 0.00 37.68 3.35
2806 2819 5.176774 TGCGGATTTTATAATAGCAGTCGTG 59.823 40.000 5.03 0.00 34.57 4.35
2809 2822 6.080406 GCTTGCGGATTTTATAATAGCAGTC 58.920 40.000 7.96 3.21 38.14 3.51
2840 2853 3.132289 GGATAGATCGTGAGGTTTCCACA 59.868 47.826 0.00 0.00 34.36 4.17
2861 2874 2.198827 TTGCCACCACTCTAACATGG 57.801 50.000 0.00 0.00 42.13 3.66
2862 2875 9.453572 AATATATATTGCCACCACTCTAACATG 57.546 33.333 7.18 0.00 0.00 3.21
2889 2902 5.362556 TTCAAACAATTAGCAGACTCAGC 57.637 39.130 0.00 0.00 0.00 4.26
2925 2938 6.586344 ACAGAAGAGTGAGAAAGAATGTTCA 58.414 36.000 0.00 0.00 0.00 3.18
2926 2939 7.489574 AACAGAAGAGTGAGAAAGAATGTTC 57.510 36.000 0.00 0.00 0.00 3.18
2927 2940 7.872113 AAACAGAAGAGTGAGAAAGAATGTT 57.128 32.000 0.00 0.00 0.00 2.71
2928 2941 7.554118 TGAAAACAGAAGAGTGAGAAAGAATGT 59.446 33.333 0.00 0.00 0.00 2.71
2929 2942 7.923888 TGAAAACAGAAGAGTGAGAAAGAATG 58.076 34.615 0.00 0.00 0.00 2.67
2930 2943 8.688747 ATGAAAACAGAAGAGTGAGAAAGAAT 57.311 30.769 0.00 0.00 0.00 2.40
2931 2944 9.046296 GTATGAAAACAGAAGAGTGAGAAAGAA 57.954 33.333 0.00 0.00 0.00 2.52
2932 2945 8.204160 TGTATGAAAACAGAAGAGTGAGAAAGA 58.796 33.333 0.00 0.00 0.00 2.52
2933 2946 8.370493 TGTATGAAAACAGAAGAGTGAGAAAG 57.630 34.615 0.00 0.00 0.00 2.62
2934 2947 8.908786 ATGTATGAAAACAGAAGAGTGAGAAA 57.091 30.769 0.00 0.00 31.70 2.52
2936 2949 9.809096 GATATGTATGAAAACAGAAGAGTGAGA 57.191 33.333 0.00 0.00 31.70 3.27
2937 2950 9.039870 GGATATGTATGAAAACAGAAGAGTGAG 57.960 37.037 0.00 0.00 31.70 3.51
2938 2951 8.762645 AGGATATGTATGAAAACAGAAGAGTGA 58.237 33.333 0.00 0.00 31.70 3.41
2939 2952 8.824781 CAGGATATGTATGAAAACAGAAGAGTG 58.175 37.037 0.00 0.00 31.70 3.51
2940 2953 8.543774 ACAGGATATGTATGAAAACAGAAGAGT 58.456 33.333 0.00 0.00 41.60 3.24
2941 2954 8.824781 CACAGGATATGTATGAAAACAGAAGAG 58.175 37.037 0.00 0.00 41.41 2.85
2942 2955 7.770433 CCACAGGATATGTATGAAAACAGAAGA 59.230 37.037 0.00 0.00 41.41 2.87
2943 2956 7.554118 ACCACAGGATATGTATGAAAACAGAAG 59.446 37.037 0.00 0.00 41.41 2.85
2944 2957 7.402054 ACCACAGGATATGTATGAAAACAGAA 58.598 34.615 0.00 0.00 41.41 3.02
2945 2958 6.957631 ACCACAGGATATGTATGAAAACAGA 58.042 36.000 0.00 0.00 41.41 3.41
2946 2959 6.823182 TGACCACAGGATATGTATGAAAACAG 59.177 38.462 0.00 0.00 41.41 3.16
2947 2960 6.716284 TGACCACAGGATATGTATGAAAACA 58.284 36.000 0.00 0.00 41.41 2.83
2948 2961 7.498900 TCATGACCACAGGATATGTATGAAAAC 59.501 37.037 0.00 0.00 41.41 2.43
2949 2962 7.498900 GTCATGACCACAGGATATGTATGAAAA 59.501 37.037 15.31 0.00 41.41 2.29
2950 2963 6.992123 GTCATGACCACAGGATATGTATGAAA 59.008 38.462 15.31 0.00 41.41 2.69
2951 2964 6.524734 GTCATGACCACAGGATATGTATGAA 58.475 40.000 15.31 0.00 41.41 2.57
2952 2965 5.278957 CGTCATGACCACAGGATATGTATGA 60.279 44.000 20.03 0.00 41.41 2.15
2953 2966 4.925646 CGTCATGACCACAGGATATGTATG 59.074 45.833 20.03 0.00 41.41 2.39
2954 2967 4.832823 TCGTCATGACCACAGGATATGTAT 59.167 41.667 20.03 0.00 41.41 2.29
2955 2968 4.211920 TCGTCATGACCACAGGATATGTA 58.788 43.478 20.03 0.00 41.41 2.29
2956 2969 3.031013 TCGTCATGACCACAGGATATGT 58.969 45.455 20.03 0.00 45.43 2.29
2957 2970 3.733443 TCGTCATGACCACAGGATATG 57.267 47.619 20.03 2.18 39.00 1.78
2958 2971 5.625426 GCATATCGTCATGACCACAGGATAT 60.625 44.000 20.03 19.62 39.00 1.63
2959 2972 4.321974 GCATATCGTCATGACCACAGGATA 60.322 45.833 20.03 18.42 39.00 2.59
2960 2973 3.555795 GCATATCGTCATGACCACAGGAT 60.556 47.826 20.03 17.00 39.00 3.24
2961 2974 2.224042 GCATATCGTCATGACCACAGGA 60.224 50.000 20.03 11.18 34.40 3.86
2962 2975 2.138320 GCATATCGTCATGACCACAGG 58.862 52.381 20.03 7.75 0.00 4.00
2975 2988 1.676006 GTCCTTTTGGGTGGCATATCG 59.324 52.381 0.00 0.00 40.87 2.92
2979 2992 0.482446 TCAGTCCTTTTGGGTGGCAT 59.518 50.000 0.00 0.00 40.87 4.40
2986 2999 1.251251 CAAGGGCTCAGTCCTTTTGG 58.749 55.000 8.23 0.00 46.43 3.28
3001 3014 1.741525 CCACAACCCACAAGCAAGG 59.258 57.895 0.00 0.00 0.00 3.61
3007 3020 2.043551 TGCTGCCACAACCCACAA 60.044 55.556 0.00 0.00 0.00 3.33
3008 3021 2.519063 CTGCTGCCACAACCCACA 60.519 61.111 0.00 0.00 0.00 4.17
3009 3022 2.203337 TCTGCTGCCACAACCCAC 60.203 61.111 0.00 0.00 0.00 4.61
3010 3023 2.113774 CTCTGCTGCCACAACCCA 59.886 61.111 0.00 0.00 0.00 4.51
3011 3024 3.368571 GCTCTGCTGCCACAACCC 61.369 66.667 0.00 0.00 0.00 4.11
3012 3025 1.860484 GAAGCTCTGCTGCCACAACC 61.860 60.000 0.00 0.00 39.62 3.77
3013 3026 1.168407 TGAAGCTCTGCTGCCACAAC 61.168 55.000 0.00 0.00 39.62 3.32
3065 3078 6.899393 TGACCTGCTCTGTTTAAAAATCAT 57.101 33.333 0.00 0.00 0.00 2.45
3073 3086 4.824479 TCATGATGACCTGCTCTGTTTA 57.176 40.909 0.00 0.00 0.00 2.01
3077 3090 3.195471 ACATCATGATGACCTGCTCTG 57.805 47.619 36.37 12.71 41.20 3.35
3078 3091 3.455177 AGAACATCATGATGACCTGCTCT 59.545 43.478 36.37 23.09 41.20 4.09
3084 3097 7.373493 AGAAACAAAAGAACATCATGATGACC 58.627 34.615 36.37 26.09 41.20 4.02
3089 3102 6.957920 TGGAGAAACAAAAGAACATCATGA 57.042 33.333 0.00 0.00 0.00 3.07
3093 3106 7.433425 CACTTCTTGGAGAAACAAAAGAACATC 59.567 37.037 0.00 0.00 34.56 3.06
3114 3127 9.490379 TGAGGAAAGTTATAAAGAAGACACTTC 57.510 33.333 0.00 0.00 0.00 3.01
3117 3130 9.220767 ACATGAGGAAAGTTATAAAGAAGACAC 57.779 33.333 0.00 0.00 0.00 3.67
3120 3133 9.886132 GGTACATGAGGAAAGTTATAAAGAAGA 57.114 33.333 0.00 0.00 0.00 2.87
3142 3155 7.592938 TCATGAAACAAAATGACAGATGGTAC 58.407 34.615 0.00 0.00 0.00 3.34
3143 3156 7.757941 TCATGAAACAAAATGACAGATGGTA 57.242 32.000 0.00 0.00 0.00 3.25
3144 3157 6.653526 TCATGAAACAAAATGACAGATGGT 57.346 33.333 0.00 0.00 0.00 3.55
3145 3158 7.544622 AGATCATGAAACAAAATGACAGATGG 58.455 34.615 0.00 0.00 35.71 3.51
3146 3159 8.860128 CAAGATCATGAAACAAAATGACAGATG 58.140 33.333 0.00 0.00 35.71 2.90
3147 3160 8.799367 TCAAGATCATGAAACAAAATGACAGAT 58.201 29.630 0.00 0.00 35.71 2.90
3148 3161 8.168790 TCAAGATCATGAAACAAAATGACAGA 57.831 30.769 0.00 0.00 35.71 3.41
3149 3162 8.080417 ACTCAAGATCATGAAACAAAATGACAG 58.920 33.333 0.00 0.00 35.71 3.51
3150 3163 7.863877 CACTCAAGATCATGAAACAAAATGACA 59.136 33.333 0.00 0.00 35.71 3.58
3151 3164 8.077991 TCACTCAAGATCATGAAACAAAATGAC 58.922 33.333 0.00 0.00 35.71 3.06
3152 3165 8.168790 TCACTCAAGATCATGAAACAAAATGA 57.831 30.769 0.00 0.00 37.23 2.57
3153 3166 8.294577 TCTCACTCAAGATCATGAAACAAAATG 58.705 33.333 0.00 0.00 0.00 2.32
3154 3167 8.400184 TCTCACTCAAGATCATGAAACAAAAT 57.600 30.769 0.00 0.00 0.00 1.82
3155 3168 7.806409 TCTCACTCAAGATCATGAAACAAAA 57.194 32.000 0.00 0.00 0.00 2.44
3156 3169 7.806409 TTCTCACTCAAGATCATGAAACAAA 57.194 32.000 0.00 0.00 0.00 2.83
3157 3170 7.991084 ATTCTCACTCAAGATCATGAAACAA 57.009 32.000 0.00 0.00 0.00 2.83
3158 3171 7.881751 AGAATTCTCACTCAAGATCATGAAACA 59.118 33.333 0.88 0.00 0.00 2.83
3159 3172 8.176365 CAGAATTCTCACTCAAGATCATGAAAC 58.824 37.037 4.57 0.00 0.00 2.78
3172 3185 5.288804 GTGCCTCTATCAGAATTCTCACTC 58.711 45.833 4.57 0.00 0.00 3.51
3176 3189 4.679373 TGGTGCCTCTATCAGAATTCTC 57.321 45.455 4.57 0.00 0.00 2.87
3196 3209 0.524862 GTTCACTTGCCCAGCTCATG 59.475 55.000 0.00 0.00 0.00 3.07
3197 3210 0.957395 CGTTCACTTGCCCAGCTCAT 60.957 55.000 0.00 0.00 0.00 2.90
3198 3211 1.597854 CGTTCACTTGCCCAGCTCA 60.598 57.895 0.00 0.00 0.00 4.26
3228 3258 3.964347 CGTGATTTTGATGTGATCGATGC 59.036 43.478 0.54 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.