Multiple sequence alignment - TraesCS2A01G050000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G050000 chr2A 100.000 3512 0 0 1 3512 19169079 19172590 0.000000e+00 6486.0
1 TraesCS2A01G050000 chr2B 89.557 1647 122 24 1006 2625 29109960 29108337 0.000000e+00 2043.0
2 TraesCS2A01G050000 chr2B 83.255 848 91 32 2703 3509 29104486 29103649 0.000000e+00 732.0
3 TraesCS2A01G050000 chr2B 84.228 615 78 15 2676 3279 29106447 29105841 6.530000e-162 580.0
4 TraesCS2A01G050000 chr2B 88.529 340 37 2 2650 2989 29108344 29108007 9.070000e-111 411.0
5 TraesCS2A01G050000 chr2B 93.333 180 11 1 720 898 29110255 29110076 7.470000e-67 265.0
6 TraesCS2A01G050000 chr2B 87.736 212 16 7 3309 3512 29105844 29105635 4.530000e-59 239.0
7 TraesCS2A01G050000 chr2D 91.828 1187 63 9 896 2075 18185674 18186833 0.000000e+00 1624.0
8 TraesCS2A01G050000 chr2D 88.685 327 21 9 588 898 18185315 18185641 5.500000e-103 385.0
9 TraesCS2A01G050000 chr2D 84.774 243 33 4 1 241 400493790 400494030 1.260000e-59 241.0
10 TraesCS2A01G050000 chr2D 97.297 37 1 0 537 573 18185284 18185320 2.930000e-06 63.9
11 TraesCS2A01G050000 chr6D 81.331 1307 205 30 1248 2538 395370786 395369503 0.000000e+00 1026.0
12 TraesCS2A01G050000 chr7B 81.059 1246 207 22 1079 2312 643128047 643126819 0.000000e+00 966.0
13 TraesCS2A01G050000 chr7B 79.651 344 47 13 7 348 704674759 704674437 3.530000e-55 226.0
14 TraesCS2A01G050000 chr3D 76.413 1221 263 22 1086 2296 26073558 26074763 1.380000e-178 636.0
15 TraesCS2A01G050000 chr3D 79.404 369 57 15 1 364 608584288 608584642 3.500000e-60 243.0
16 TraesCS2A01G050000 chr3D 80.122 327 46 15 1 324 126092802 126092492 3.530000e-55 226.0
17 TraesCS2A01G050000 chr3B 76.026 1218 260 28 1093 2296 43313136 43314335 1.390000e-168 603.0
18 TraesCS2A01G050000 chr4B 83.742 326 38 10 1 324 508562552 508562864 9.530000e-76 294.0
19 TraesCS2A01G050000 chr4B 84.016 244 32 7 1 241 654325960 654325721 9.810000e-56 228.0
20 TraesCS2A01G050000 chr5B 81.306 337 40 16 1 328 546775950 546776272 5.820000e-63 252.0
21 TraesCS2A01G050000 chr5D 85.345 232 29 4 4 234 129393168 129393395 5.860000e-58 235.0
22 TraesCS2A01G050000 chr5D 85.981 107 13 2 2039 2144 27260841 27260736 2.870000e-21 113.0
23 TraesCS2A01G050000 chr7A 85.333 225 24 7 1 222 108550201 108549983 1.270000e-54 224.0
24 TraesCS2A01G050000 chr5A 76.860 242 44 11 2039 2277 62977710 62977478 3.680000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G050000 chr2A 19169079 19172590 3511 False 6486.000000 6486 100.000000 1 3512 1 chr2A.!!$F1 3511
1 TraesCS2A01G050000 chr2B 29103649 29110255 6606 True 711.666667 2043 87.773000 720 3512 6 chr2B.!!$R1 2792
2 TraesCS2A01G050000 chr2D 18185284 18186833 1549 False 690.966667 1624 92.603333 537 2075 3 chr2D.!!$F2 1538
3 TraesCS2A01G050000 chr6D 395369503 395370786 1283 True 1026.000000 1026 81.331000 1248 2538 1 chr6D.!!$R1 1290
4 TraesCS2A01G050000 chr7B 643126819 643128047 1228 True 966.000000 966 81.059000 1079 2312 1 chr7B.!!$R1 1233
5 TraesCS2A01G050000 chr3D 26073558 26074763 1205 False 636.000000 636 76.413000 1086 2296 1 chr3D.!!$F1 1210
6 TraesCS2A01G050000 chr3B 43313136 43314335 1199 False 603.000000 603 76.026000 1093 2296 1 chr3B.!!$F1 1203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 506 0.033642 GTAGCCGGCCCATCTTACTC 59.966 60.0 26.15 0.0 0.0 2.59 F
1789 1851 0.032952 TGCAGTGACTACAACCGGAC 59.967 55.0 9.46 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2416 2504 0.180171 CCCTCACACACACAGTCCAA 59.820 55.0 0.0 0.0 0.0 3.53 R
3300 7226 0.321919 AACAGATCAGGCACGCACAT 60.322 50.0 0.0 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 157 9.575868 TTTTTCTATACACATTTTACACTCCCA 57.424 29.630 0.00 0.00 0.00 4.37
157 158 9.575868 TTTTCTATACACATTTTACACTCCCAA 57.424 29.630 0.00 0.00 0.00 4.12
158 159 9.575868 TTTCTATACACATTTTACACTCCCAAA 57.424 29.630 0.00 0.00 0.00 3.28
159 160 9.747898 TTCTATACACATTTTACACTCCCAAAT 57.252 29.630 0.00 0.00 0.00 2.32
160 161 9.173021 TCTATACACATTTTACACTCCCAAATG 57.827 33.333 0.00 0.00 41.66 2.32
161 162 4.881920 ACACATTTTACACTCCCAAATGC 58.118 39.130 4.20 0.00 40.23 3.56
162 163 4.588528 ACACATTTTACACTCCCAAATGCT 59.411 37.500 4.20 0.00 40.23 3.79
163 164 5.070313 ACACATTTTACACTCCCAAATGCTT 59.930 36.000 4.20 0.00 40.23 3.91
164 165 5.406175 CACATTTTACACTCCCAAATGCTTG 59.594 40.000 4.20 0.00 40.23 4.01
165 166 5.304101 ACATTTTACACTCCCAAATGCTTGA 59.696 36.000 4.20 0.00 40.23 3.02
166 167 6.014327 ACATTTTACACTCCCAAATGCTTGAT 60.014 34.615 4.20 0.00 40.23 2.57
167 168 6.418057 TTTTACACTCCCAAATGCTTGATT 57.582 33.333 0.00 0.00 34.14 2.57
168 169 7.531857 TTTTACACTCCCAAATGCTTGATTA 57.468 32.000 0.00 0.00 34.14 1.75
169 170 7.716799 TTTACACTCCCAAATGCTTGATTAT 57.283 32.000 0.00 0.00 34.14 1.28
170 171 5.841957 ACACTCCCAAATGCTTGATTATC 57.158 39.130 0.00 0.00 34.14 1.75
171 172 5.263599 ACACTCCCAAATGCTTGATTATCA 58.736 37.500 0.00 0.00 34.14 2.15
172 173 5.895534 ACACTCCCAAATGCTTGATTATCAT 59.104 36.000 0.00 0.00 34.14 2.45
173 174 6.381994 ACACTCCCAAATGCTTGATTATCATT 59.618 34.615 0.00 0.00 34.14 2.57
174 175 7.093201 ACACTCCCAAATGCTTGATTATCATTT 60.093 33.333 0.00 0.00 40.00 2.32
175 176 7.767198 CACTCCCAAATGCTTGATTATCATTTT 59.233 33.333 0.00 0.00 38.07 1.82
176 177 8.323567 ACTCCCAAATGCTTGATTATCATTTTT 58.676 29.630 0.00 0.00 38.07 1.94
177 178 8.721019 TCCCAAATGCTTGATTATCATTTTTC 57.279 30.769 0.00 0.00 38.07 2.29
178 179 8.319881 TCCCAAATGCTTGATTATCATTTTTCA 58.680 29.630 0.00 0.00 38.07 2.69
179 180 8.948145 CCCAAATGCTTGATTATCATTTTTCAA 58.052 29.630 0.00 0.00 38.07 2.69
309 310 9.959749 ACACGTTCAACATTTTTCAAATATACT 57.040 25.926 0.00 0.00 0.00 2.12
448 449 7.872113 TTTTTAGGGGTAACAGAAAACGTAA 57.128 32.000 0.00 0.00 39.74 3.18
449 450 7.872113 TTTTAGGGGTAACAGAAAACGTAAA 57.128 32.000 0.00 0.00 39.74 2.01
450 451 8.462589 TTTTAGGGGTAACAGAAAACGTAAAT 57.537 30.769 0.00 0.00 39.74 1.40
451 452 9.566432 TTTTAGGGGTAACAGAAAACGTAAATA 57.434 29.630 0.00 0.00 39.74 1.40
452 453 9.566432 TTTAGGGGTAACAGAAAACGTAAATAA 57.434 29.630 0.00 0.00 39.74 1.40
453 454 9.566432 TTAGGGGTAACAGAAAACGTAAATAAA 57.434 29.630 0.00 0.00 39.74 1.40
454 455 8.640063 AGGGGTAACAGAAAACGTAAATAAAT 57.360 30.769 0.00 0.00 39.74 1.40
455 456 9.737844 AGGGGTAACAGAAAACGTAAATAAATA 57.262 29.630 0.00 0.00 39.74 1.40
456 457 9.773328 GGGGTAACAGAAAACGTAAATAAATAC 57.227 33.333 0.00 0.00 39.74 1.89
473 474 8.776376 AATAAATACAGAAAAATTGGCTGTGG 57.224 30.769 14.74 0.00 42.38 4.17
474 475 2.531522 ACAGAAAAATTGGCTGTGGC 57.468 45.000 7.16 0.00 41.02 5.01
502 503 3.134879 CGTAGCCGGCCCATCTTA 58.865 61.111 26.15 4.43 0.00 2.10
503 504 1.300697 CGTAGCCGGCCCATCTTAC 60.301 63.158 26.15 16.82 0.00 2.34
504 505 1.745320 CGTAGCCGGCCCATCTTACT 61.745 60.000 26.15 2.97 0.00 2.24
505 506 0.033642 GTAGCCGGCCCATCTTACTC 59.966 60.000 26.15 0.00 0.00 2.59
506 507 1.461091 TAGCCGGCCCATCTTACTCG 61.461 60.000 26.15 0.00 0.00 4.18
507 508 2.280186 CCGGCCCATCTTACTCGC 60.280 66.667 0.00 0.00 0.00 5.03
508 509 2.280186 CGGCCCATCTTACTCGCC 60.280 66.667 0.00 0.00 36.21 5.54
509 510 2.111251 GGCCCATCTTACTCGCCC 59.889 66.667 0.00 0.00 33.30 6.13
510 511 2.111251 GCCCATCTTACTCGCCCC 59.889 66.667 0.00 0.00 0.00 5.80
511 512 2.444256 GCCCATCTTACTCGCCCCT 61.444 63.158 0.00 0.00 0.00 4.79
512 513 1.984288 GCCCATCTTACTCGCCCCTT 61.984 60.000 0.00 0.00 0.00 3.95
513 514 0.106894 CCCATCTTACTCGCCCCTTC 59.893 60.000 0.00 0.00 0.00 3.46
514 515 0.830648 CCATCTTACTCGCCCCTTCA 59.169 55.000 0.00 0.00 0.00 3.02
515 516 1.202580 CCATCTTACTCGCCCCTTCAG 60.203 57.143 0.00 0.00 0.00 3.02
516 517 0.466124 ATCTTACTCGCCCCTTCAGC 59.534 55.000 0.00 0.00 0.00 4.26
523 524 2.125350 GCCCCTTCAGCGAGTCAG 60.125 66.667 0.00 0.00 0.00 3.51
524 525 2.650116 GCCCCTTCAGCGAGTCAGA 61.650 63.158 0.00 0.00 0.00 3.27
525 526 1.975327 CCCCTTCAGCGAGTCAGAA 59.025 57.895 0.00 0.00 0.00 3.02
526 527 0.108424 CCCCTTCAGCGAGTCAGAAG 60.108 60.000 9.04 9.04 37.86 2.85
527 528 0.891373 CCCTTCAGCGAGTCAGAAGA 59.109 55.000 14.98 0.00 39.76 2.87
528 529 1.135141 CCCTTCAGCGAGTCAGAAGAG 60.135 57.143 14.98 2.55 39.76 2.85
529 530 1.627879 CTTCAGCGAGTCAGAAGAGC 58.372 55.000 10.04 0.00 39.76 4.09
530 531 0.244994 TTCAGCGAGTCAGAAGAGCC 59.755 55.000 0.00 0.00 0.00 4.70
531 532 1.515952 CAGCGAGTCAGAAGAGCCG 60.516 63.158 0.00 0.00 0.00 5.52
532 533 1.974343 AGCGAGTCAGAAGAGCCGT 60.974 57.895 0.00 0.00 0.00 5.68
533 534 0.677098 AGCGAGTCAGAAGAGCCGTA 60.677 55.000 0.00 0.00 0.00 4.02
534 535 0.382515 GCGAGTCAGAAGAGCCGTAT 59.617 55.000 0.00 0.00 0.00 3.06
535 536 1.862008 GCGAGTCAGAAGAGCCGTATG 60.862 57.143 0.00 0.00 0.00 2.39
573 574 2.046023 CTGAGCCCATTGACGCCA 60.046 61.111 0.00 0.00 0.00 5.69
574 575 2.359850 TGAGCCCATTGACGCCAC 60.360 61.111 0.00 0.00 0.00 5.01
575 576 3.499737 GAGCCCATTGACGCCACG 61.500 66.667 0.00 0.00 0.00 4.94
576 577 3.950794 GAGCCCATTGACGCCACGA 62.951 63.158 0.00 0.00 0.00 4.35
577 578 3.053291 GCCCATTGACGCCACGAA 61.053 61.111 0.00 0.00 0.00 3.85
578 579 3.039202 GCCCATTGACGCCACGAAG 62.039 63.158 0.00 0.00 0.00 3.79
579 580 2.398554 CCCATTGACGCCACGAAGG 61.399 63.158 0.00 0.00 41.84 3.46
580 581 1.375396 CCATTGACGCCACGAAGGA 60.375 57.895 2.86 0.00 41.22 3.36
581 582 1.361668 CCATTGACGCCACGAAGGAG 61.362 60.000 2.86 2.14 43.77 3.69
582 583 1.741770 ATTGACGCCACGAAGGAGC 60.742 57.895 2.86 0.00 41.55 4.70
588 589 4.069232 CCACGAAGGAGCGGCAGA 62.069 66.667 1.45 0.00 41.22 4.26
589 590 2.811317 CACGAAGGAGCGGCAGAC 60.811 66.667 1.45 0.00 35.12 3.51
590 591 2.992114 ACGAAGGAGCGGCAGACT 60.992 61.111 1.45 0.00 35.12 3.24
591 592 2.202676 CGAAGGAGCGGCAGACTC 60.203 66.667 1.45 0.00 0.00 3.36
603 604 3.137459 AGACTCCTCCGAGCGCAG 61.137 66.667 11.47 2.34 40.03 5.18
686 688 2.240162 AATCCCCGTCTTCGCTGTCC 62.240 60.000 0.00 0.00 35.54 4.02
687 689 4.452733 CCCCGTCTTCGCTGTCCC 62.453 72.222 0.00 0.00 35.54 4.46
688 690 3.691342 CCCGTCTTCGCTGTCCCA 61.691 66.667 0.00 0.00 35.54 4.37
733 747 1.069258 CCTCTCCCGGCCGATTAAC 59.931 63.158 30.73 0.00 0.00 2.01
744 758 0.461339 CCGATTAACCCCCTCGTGTG 60.461 60.000 0.00 0.00 0.00 3.82
747 761 1.205460 ATTAACCCCCTCGTGTGGCT 61.205 55.000 0.00 0.00 0.00 4.75
783 798 4.023291 TGTTCTTCCTTTGACCTTGCTTT 58.977 39.130 0.00 0.00 0.00 3.51
784 799 4.142182 TGTTCTTCCTTTGACCTTGCTTTG 60.142 41.667 0.00 0.00 0.00 2.77
839 854 2.161410 TCCATTAATTCTGCGTGTGTGC 59.839 45.455 0.00 0.00 0.00 4.57
847 862 3.932313 GCGTGTGTGCCGTTCGTT 61.932 61.111 0.00 0.00 0.00 3.85
888 905 1.153449 TGGAATTAGGAGCGGCGTG 60.153 57.895 9.37 0.00 0.00 5.34
890 907 2.513897 AATTAGGAGCGGCGTGGC 60.514 61.111 9.37 0.00 0.00 5.01
910 962 1.806542 CGGTGATCCAACTTTCACTGG 59.193 52.381 4.36 0.00 42.80 4.00
918 970 6.207417 TGATCCAACTTTCACTGGAGAAATTC 59.793 38.462 0.00 0.00 44.82 2.17
923 975 4.511826 ACTTTCACTGGAGAAATTCGTCAC 59.488 41.667 0.00 0.00 36.94 3.67
979 1031 2.301296 CTGCTCCCATCGAATCCTGTAT 59.699 50.000 0.00 0.00 0.00 2.29
981 1033 2.672478 GCTCCCATCGAATCCTGTATCG 60.672 54.545 0.00 0.00 40.31 2.92
1001 1053 3.884693 TCGTCGCCAGGATAATACACTTA 59.115 43.478 0.00 0.00 0.00 2.24
1002 1054 4.023450 TCGTCGCCAGGATAATACACTTAG 60.023 45.833 0.00 0.00 0.00 2.18
1004 1056 4.038883 GTCGCCAGGATAATACACTTAGGT 59.961 45.833 0.00 0.00 0.00 3.08
1034 1087 3.758554 GCTGGACACTGGACATATTTGTT 59.241 43.478 0.00 0.00 35.79 2.83
1047 1100 9.605275 TGGACATATTTGTTCTCTCTAATCTTG 57.395 33.333 0.00 0.00 35.79 3.02
1060 1113 6.524734 TCTCTAATCTTGAGAGTTTTGCACA 58.475 36.000 0.00 0.00 41.13 4.57
1061 1114 6.648310 TCTCTAATCTTGAGAGTTTTGCACAG 59.352 38.462 0.00 0.00 41.13 3.66
1062 1115 4.843220 AATCTTGAGAGTTTTGCACAGG 57.157 40.909 0.00 0.00 0.00 4.00
1063 1116 1.949525 TCTTGAGAGTTTTGCACAGGC 59.050 47.619 0.00 0.00 41.68 4.85
1064 1117 1.952296 CTTGAGAGTTTTGCACAGGCT 59.048 47.619 0.00 0.00 41.91 4.58
1065 1118 1.311859 TGAGAGTTTTGCACAGGCTG 58.688 50.000 14.16 14.16 41.91 4.85
1066 1119 1.134128 TGAGAGTTTTGCACAGGCTGA 60.134 47.619 23.66 0.00 41.91 4.26
1067 1120 1.534595 GAGAGTTTTGCACAGGCTGAG 59.465 52.381 23.66 15.36 41.91 3.35
1068 1121 1.133976 AGAGTTTTGCACAGGCTGAGT 60.134 47.619 23.66 0.00 41.91 3.41
1069 1122 2.104792 AGAGTTTTGCACAGGCTGAGTA 59.895 45.455 23.66 10.54 41.91 2.59
1070 1123 2.222027 AGTTTTGCACAGGCTGAGTAC 58.778 47.619 23.66 10.40 41.91 2.73
1183 1236 4.106925 GGCTCAGTCTGCCCCTGG 62.107 72.222 0.00 0.00 44.32 4.45
1257 1310 1.264749 ACGCCATGCCTCCTCTACAA 61.265 55.000 0.00 0.00 0.00 2.41
1273 1326 1.356624 CAATTCCGAATCCGCTGGC 59.643 57.895 0.00 0.00 0.00 4.85
1306 1359 0.174617 GCCTCTACAGCCTCACAGAC 59.825 60.000 0.00 0.00 0.00 3.51
1335 1388 1.833787 TACAAGTTGACCCTCCCGGC 61.834 60.000 10.54 0.00 33.26 6.13
1400 1453 1.470098 CTGGCTGGTAACTGTTGATGC 59.530 52.381 2.69 2.64 37.92 3.91
1789 1851 0.032952 TGCAGTGACTACAACCGGAC 59.967 55.000 9.46 0.00 0.00 4.79
1864 1926 5.894298 AAGAATGGACTCTGTATATGGCA 57.106 39.130 0.00 0.00 0.00 4.92
1896 1958 1.523758 ACGTTGTTCAAGCTCCATCC 58.476 50.000 0.00 0.00 0.00 3.51
2077 2144 7.828717 TGCTGTTTCTTGGACATAATCAATCTA 59.171 33.333 0.00 0.00 0.00 1.98
2308 2376 3.795688 AGATGAACTTGGCTTCAGGAA 57.204 42.857 0.00 0.00 33.65 3.36
2319 2387 2.025887 GGCTTCAGGAAGGGATTGAAGA 60.026 50.000 15.41 0.00 38.48 2.87
2353 2425 5.212532 TGGATTCAATGAACCAACAAAGG 57.787 39.130 12.57 0.00 0.00 3.11
2354 2426 4.040217 TGGATTCAATGAACCAACAAAGGG 59.960 41.667 12.57 0.00 0.00 3.95
2365 2446 0.187361 AACAAAGGGGTGGCTTGCTA 59.813 50.000 0.00 0.00 0.00 3.49
2366 2447 0.409484 ACAAAGGGGTGGCTTGCTAT 59.591 50.000 0.00 0.00 0.00 2.97
2382 2463 3.511699 TGCTATCTTACTGTCGTTGCTG 58.488 45.455 0.00 0.00 0.00 4.41
2409 2497 8.733458 CAAGAGTCATCCACAAAATAATCAAGA 58.267 33.333 0.00 0.00 0.00 3.02
2416 2504 6.542821 TCCACAAAATAATCAAGAGACCACT 58.457 36.000 0.00 0.00 0.00 4.00
2421 2509 7.040409 ACAAAATAATCAAGAGACCACTTGGAC 60.040 37.037 1.14 0.00 44.84 4.02
2425 2513 2.103094 TCAAGAGACCACTTGGACTGTG 59.897 50.000 4.91 3.85 44.84 3.66
2438 2526 3.349006 CTGTGTGTGTGAGGGCGC 61.349 66.667 0.00 0.00 0.00 6.53
2466 2554 2.158900 CGCTTGATCCTGGTCCTTACAT 60.159 50.000 0.00 0.00 0.00 2.29
2475 2563 4.721776 TCCTGGTCCTTACATGCTAGATTT 59.278 41.667 0.00 0.00 0.00 2.17
2476 2564 5.191722 TCCTGGTCCTTACATGCTAGATTTT 59.808 40.000 0.00 0.00 0.00 1.82
2482 2570 6.706716 GTCCTTACATGCTAGATTTTCCCTAC 59.293 42.308 0.00 0.00 0.00 3.18
2510 2599 8.730680 TGGCTCTGAATAAATAGTTTTGAGTTC 58.269 33.333 0.00 0.00 0.00 3.01
2586 2675 8.236586 TGATCTTGTTCTTATCATTTTTCCGTG 58.763 33.333 0.00 0.00 0.00 4.94
2601 2690 1.274167 TCCGTGGTATTTCTTCTGCGT 59.726 47.619 0.00 0.00 0.00 5.24
2610 2699 1.882912 TTCTTCTGCGTTGCTCATGT 58.117 45.000 0.00 0.00 0.00 3.21
2612 2701 0.094216 CTTCTGCGTTGCTCATGTCG 59.906 55.000 0.00 0.00 0.00 4.35
2616 2705 2.130395 CTGCGTTGCTCATGTCGATAT 58.870 47.619 0.00 0.00 0.00 1.63
2620 2709 3.981416 GCGTTGCTCATGTCGATATCTTA 59.019 43.478 0.34 0.00 0.00 2.10
2621 2710 4.623167 GCGTTGCTCATGTCGATATCTTAT 59.377 41.667 0.34 0.00 0.00 1.73
2622 2711 5.119279 GCGTTGCTCATGTCGATATCTTATT 59.881 40.000 0.34 0.00 0.00 1.40
2623 2712 6.520175 CGTTGCTCATGTCGATATCTTATTG 58.480 40.000 0.34 0.00 0.00 1.90
2624 2713 6.144563 CGTTGCTCATGTCGATATCTTATTGT 59.855 38.462 0.34 0.00 0.00 2.71
2625 2714 7.286508 GTTGCTCATGTCGATATCTTATTGTG 58.713 38.462 0.34 0.00 0.00 3.33
2626 2715 5.928264 TGCTCATGTCGATATCTTATTGTGG 59.072 40.000 0.34 0.00 0.00 4.17
2627 2716 5.928839 GCTCATGTCGATATCTTATTGTGGT 59.071 40.000 0.34 0.00 0.00 4.16
2628 2717 6.128715 GCTCATGTCGATATCTTATTGTGGTG 60.129 42.308 0.34 0.00 0.00 4.17
2629 2718 6.816136 TCATGTCGATATCTTATTGTGGTGT 58.184 36.000 0.34 0.00 0.00 4.16
2630 2719 6.701400 TCATGTCGATATCTTATTGTGGTGTG 59.299 38.462 0.34 0.00 0.00 3.82
2631 2720 5.972935 TGTCGATATCTTATTGTGGTGTGT 58.027 37.500 0.34 0.00 0.00 3.72
2632 2721 6.403049 TGTCGATATCTTATTGTGGTGTGTT 58.597 36.000 0.34 0.00 0.00 3.32
2633 2722 6.312672 TGTCGATATCTTATTGTGGTGTGTTG 59.687 38.462 0.34 0.00 0.00 3.33
2634 2723 5.815222 TCGATATCTTATTGTGGTGTGTTGG 59.185 40.000 0.34 0.00 0.00 3.77
2635 2724 5.584649 CGATATCTTATTGTGGTGTGTTGGT 59.415 40.000 0.34 0.00 0.00 3.67
2636 2725 6.759356 CGATATCTTATTGTGGTGTGTTGGTA 59.241 38.462 0.34 0.00 0.00 3.25
2637 2726 7.441157 CGATATCTTATTGTGGTGTGTTGGTAT 59.559 37.037 0.34 0.00 0.00 2.73
2638 2727 9.772973 GATATCTTATTGTGGTGTGTTGGTATA 57.227 33.333 0.00 0.00 0.00 1.47
2641 2730 8.500753 TCTTATTGTGGTGTGTTGGTATATTC 57.499 34.615 0.00 0.00 0.00 1.75
2642 2731 8.103935 TCTTATTGTGGTGTGTTGGTATATTCA 58.896 33.333 0.00 0.00 0.00 2.57
2643 2732 8.815565 TTATTGTGGTGTGTTGGTATATTCAT 57.184 30.769 0.00 0.00 0.00 2.57
2644 2733 7.716799 ATTGTGGTGTGTTGGTATATTCATT 57.283 32.000 0.00 0.00 0.00 2.57
2645 2734 6.507958 TGTGGTGTGTTGGTATATTCATTG 57.492 37.500 0.00 0.00 0.00 2.82
2646 2735 6.241645 TGTGGTGTGTTGGTATATTCATTGA 58.758 36.000 0.00 0.00 0.00 2.57
2647 2736 6.889177 TGTGGTGTGTTGGTATATTCATTGAT 59.111 34.615 0.00 0.00 0.00 2.57
2648 2737 7.395772 TGTGGTGTGTTGGTATATTCATTGATT 59.604 33.333 0.00 0.00 0.00 2.57
2649 2738 7.915397 GTGGTGTGTTGGTATATTCATTGATTC 59.085 37.037 0.00 0.00 0.00 2.52
2650 2739 7.833682 TGGTGTGTTGGTATATTCATTGATTCT 59.166 33.333 0.00 0.00 0.00 2.40
2651 2740 8.686334 GGTGTGTTGGTATATTCATTGATTCTT 58.314 33.333 0.00 0.00 0.00 2.52
2652 2741 9.722056 GTGTGTTGGTATATTCATTGATTCTTC 57.278 33.333 0.00 0.00 0.00 2.87
2666 2755 9.634163 TCATTGATTCTTCATTGTTTCTGAATG 57.366 29.630 0.00 0.00 35.62 2.67
2676 2765 4.870221 TGTTTCTGAATGATCTGATGCG 57.130 40.909 0.00 0.00 34.06 4.73
2711 2800 3.521947 ACTCTAGTGTAATGTTCGGGC 57.478 47.619 0.00 0.00 0.00 6.13
2743 2832 0.530744 TCTAGTGTAACGCTGCTGGG 59.469 55.000 6.09 6.09 45.86 4.45
2766 2855 3.386932 TGGAATAGCAGCAGGGAATTT 57.613 42.857 0.00 0.00 0.00 1.82
2773 2862 0.461339 CAGCAGGGAATTTGCATGGC 60.461 55.000 4.75 0.00 43.92 4.40
2793 2882 3.131046 GGCATTTCCTTCCAATAGTGGTG 59.869 47.826 9.41 3.71 46.11 4.17
2794 2883 3.763897 GCATTTCCTTCCAATAGTGGTGT 59.236 43.478 9.41 0.00 46.11 4.16
2799 2888 2.819608 CCTTCCAATAGTGGTGTGTTGG 59.180 50.000 9.41 0.00 46.11 3.77
2800 2889 1.904287 TCCAATAGTGGTGTGTTGGC 58.096 50.000 9.41 0.00 46.11 4.52
2804 2893 3.761218 CCAATAGTGGTGTGTTGGCAATA 59.239 43.478 1.92 0.00 40.42 1.90
2807 2896 3.153369 AGTGGTGTGTTGGCAATATGA 57.847 42.857 1.92 0.00 0.00 2.15
2815 2904 5.630680 GTGTGTTGGCAATATGAGAAAGTTG 59.369 40.000 1.92 0.00 0.00 3.16
2817 2906 5.858581 GTGTTGGCAATATGAGAAAGTTGTC 59.141 40.000 1.92 0.00 0.00 3.18
2830 2919 4.636206 AGAAAGTTGTCTTGCTTCTTTCGT 59.364 37.500 0.00 0.00 44.59 3.85
2849 2938 3.135225 CGTGTGACTTGGTAATTGTGGA 58.865 45.455 0.00 0.00 0.00 4.02
2859 2948 7.160726 ACTTGGTAATTGTGGATTGGATTTTG 58.839 34.615 0.00 0.00 0.00 2.44
2872 2961 6.239572 GGATTGGATTTTGTGGAAAAGGAGAA 60.240 38.462 0.00 0.00 34.53 2.87
2875 2964 5.048083 TGGATTTTGTGGAAAAGGAGAATCG 60.048 40.000 0.00 0.00 34.53 3.34
2890 2979 1.405463 GAATCGGGGATTTTGTCTGCC 59.595 52.381 0.00 0.00 31.89 4.85
2893 2982 0.322456 CGGGGATTTTGTCTGCCTCA 60.322 55.000 0.00 0.00 0.00 3.86
2908 4869 2.158623 TGCCTCATGTTCTTTGTGGTCT 60.159 45.455 0.00 0.00 31.79 3.85
2914 4875 4.576053 TCATGTTCTTTGTGGTCTGTTGAG 59.424 41.667 0.00 0.00 0.00 3.02
2919 4880 1.967319 TTGTGGTCTGTTGAGAAGGC 58.033 50.000 0.00 0.00 0.00 4.35
2944 4905 4.695455 GCATACTGTTGCTTTCAGAAGGTA 59.305 41.667 9.53 0.00 39.57 3.08
2953 4914 5.794894 TGCTTTCAGAAGGTAGAAGGTAAG 58.205 41.667 0.00 0.00 33.34 2.34
2954 4915 5.307196 TGCTTTCAGAAGGTAGAAGGTAAGT 59.693 40.000 0.00 0.00 33.34 2.24
2962 4923 6.952358 AGAAGGTAGAAGGTAAGTGTGACATA 59.048 38.462 0.00 0.00 0.00 2.29
2964 4925 7.735326 AGGTAGAAGGTAAGTGTGACATAAT 57.265 36.000 0.00 0.00 0.00 1.28
3001 4962 9.906660 TGTATAATTTTTCTTTTAGTGCACCTG 57.093 29.630 14.63 0.00 0.00 4.00
3007 4968 4.948341 TCTTTTAGTGCACCTGTGAGTA 57.052 40.909 14.63 0.00 0.00 2.59
3008 4969 5.483685 TCTTTTAGTGCACCTGTGAGTAT 57.516 39.130 14.63 0.00 0.00 2.12
3010 4971 6.999950 TCTTTTAGTGCACCTGTGAGTATTA 58.000 36.000 14.63 0.00 0.00 0.98
3012 4973 8.100791 TCTTTTAGTGCACCTGTGAGTATTATT 58.899 33.333 14.63 0.00 0.00 1.40
3014 4975 9.727859 TTTTAGTGCACCTGTGAGTATTATTTA 57.272 29.630 14.63 0.00 0.00 1.40
3015 4976 9.899661 TTTAGTGCACCTGTGAGTATTATTTAT 57.100 29.630 14.63 0.00 0.00 1.40
3016 4977 7.792374 AGTGCACCTGTGAGTATTATTTATG 57.208 36.000 14.63 0.00 0.00 1.90
3017 4978 7.338710 AGTGCACCTGTGAGTATTATTTATGT 58.661 34.615 14.63 0.00 0.00 2.29
3018 4979 7.280876 AGTGCACCTGTGAGTATTATTTATGTG 59.719 37.037 14.63 0.00 0.00 3.21
3019 4980 6.542005 TGCACCTGTGAGTATTATTTATGTGG 59.458 38.462 0.51 0.00 0.00 4.17
3020 4981 6.017109 GCACCTGTGAGTATTATTTATGTGGG 60.017 42.308 0.51 0.00 0.00 4.61
3029 6955 9.433153 GAGTATTATTTATGTGGGTAGTAAGCC 57.567 37.037 0.00 0.00 44.02 4.35
3036 6962 3.036091 TGTGGGTAGTAAGCCTATGTCC 58.964 50.000 0.00 0.00 44.09 4.02
3038 6964 2.022820 TGGGTAGTAAGCCTATGTCCCA 60.023 50.000 0.00 0.00 44.09 4.37
3050 6976 2.029838 ATGTCCCATGAAGAACTCGC 57.970 50.000 0.00 0.00 0.00 5.03
3062 6988 5.631026 TGAAGAACTCGCAAATATTTCTGC 58.369 37.500 0.00 0.00 35.14 4.26
3083 7009 4.157656 TGCCAGGTTATGTGATTTGCTTAC 59.842 41.667 0.00 0.00 0.00 2.34
3091 7017 3.156293 TGTGATTTGCTTACCTGCATGT 58.844 40.909 0.00 0.00 42.96 3.21
3093 7019 3.441572 GTGATTTGCTTACCTGCATGTCT 59.558 43.478 0.00 0.00 42.96 3.41
3099 7025 2.675348 GCTTACCTGCATGTCTTCTGAC 59.325 50.000 0.00 0.00 43.20 3.51
3177 7103 4.048504 GCATTAGCGTTCCAACACTTTTT 58.951 39.130 0.00 0.00 0.00 1.94
3178 7104 4.085107 GCATTAGCGTTCCAACACTTTTTG 60.085 41.667 0.00 0.00 0.00 2.44
3183 7109 3.924073 GCGTTCCAACACTTTTTGAACTT 59.076 39.130 0.00 0.00 0.00 2.66
3185 7111 5.157781 CGTTCCAACACTTTTTGAACTTCA 58.842 37.500 0.00 0.00 0.00 3.02
3190 7116 7.213678 TCCAACACTTTTTGAACTTCAGTTTT 58.786 30.769 0.00 0.00 38.56 2.43
3194 7120 8.072238 ACACTTTTTGAACTTCAGTTTTTGTC 57.928 30.769 0.00 0.00 38.56 3.18
3195 7121 7.096230 ACACTTTTTGAACTTCAGTTTTTGTCG 60.096 33.333 0.00 0.00 38.56 4.35
3196 7122 5.755330 TTTTGAACTTCAGTTTTTGTCGC 57.245 34.783 0.00 0.00 38.56 5.19
3198 7124 2.223157 TGAACTTCAGTTTTTGTCGCCG 60.223 45.455 0.00 0.00 38.56 6.46
3214 7140 0.749454 GCCGGATTGTGAGCTCCATT 60.749 55.000 12.15 5.36 0.00 3.16
3220 7146 1.999648 TTGTGAGCTCCATTTGGCTT 58.000 45.000 12.15 0.00 39.05 4.35
3261 7187 4.967084 TCAAGTTTACAGTCTTAGCCCA 57.033 40.909 0.00 0.00 0.00 5.36
3262 7188 5.298989 TCAAGTTTACAGTCTTAGCCCAA 57.701 39.130 0.00 0.00 0.00 4.12
3275 7201 0.255890 AGCCCAATGTACCTGCGAAT 59.744 50.000 0.00 0.00 0.00 3.34
3278 7204 1.134098 CCCAATGTACCTGCGAATCCT 60.134 52.381 0.00 0.00 0.00 3.24
3282 7208 2.672961 TGTACCTGCGAATCCTCTTG 57.327 50.000 0.00 0.00 0.00 3.02
3284 7210 1.134670 GTACCTGCGAATCCTCTTGCT 60.135 52.381 0.00 0.00 0.00 3.91
3288 7214 2.415090 CCTGCGAATCCTCTTGCTTTTG 60.415 50.000 0.00 0.00 0.00 2.44
3293 7219 4.507756 GCGAATCCTCTTGCTTTTGTTTTT 59.492 37.500 0.00 0.00 0.00 1.94
3294 7220 5.689961 GCGAATCCTCTTGCTTTTGTTTTTA 59.310 36.000 0.00 0.00 0.00 1.52
3312 7238 3.755965 TTAAACATATGTGCGTGCCTG 57.244 42.857 9.63 0.00 0.00 4.85
3313 7239 1.819928 AAACATATGTGCGTGCCTGA 58.180 45.000 9.63 0.00 0.00 3.86
3319 7245 0.321919 ATGTGCGTGCCTGATCTGTT 60.322 50.000 0.00 0.00 0.00 3.16
3320 7246 1.229975 TGTGCGTGCCTGATCTGTTG 61.230 55.000 0.00 0.00 0.00 3.33
3334 7260 7.504403 CCTGATCTGTTGAAGAAGTATGGTAT 58.496 38.462 0.00 0.00 38.79 2.73
3339 7265 7.861629 TCTGTTGAAGAAGTATGGTATGGATT 58.138 34.615 0.00 0.00 29.54 3.01
3340 7266 7.987458 TCTGTTGAAGAAGTATGGTATGGATTC 59.013 37.037 0.00 0.00 29.54 2.52
3346 7275 9.566432 GAAGAAGTATGGTATGGATTCTTCATT 57.434 33.333 16.52 2.01 46.01 2.57
3347 7276 9.566432 AAGAAGTATGGTATGGATTCTTCATTC 57.434 33.333 0.00 0.00 32.99 2.67
3364 7293 7.277396 TCTTCATTCTGCATCACTGAATATCA 58.723 34.615 0.00 0.00 42.98 2.15
3367 7296 6.367969 TCATTCTGCATCACTGAATATCATCG 59.632 38.462 0.00 0.00 42.98 3.84
3389 7318 6.170506 TCGAGTTGTGTAGCAAGGATTTAAT 58.829 36.000 0.00 0.00 37.83 1.40
3422 7351 8.361139 ACCTTCAGTAATAGAGGTAATGATTCG 58.639 37.037 0.00 0.00 0.00 3.34
3423 7352 7.815068 CCTTCAGTAATAGAGGTAATGATTCGG 59.185 40.741 0.00 0.00 0.00 4.30
3473 7403 1.931007 ATCTTGGCCTTGGCTCCCTC 61.931 60.000 11.71 0.00 0.00 4.30
3479 7409 1.001641 CCTTGGCTCCCTCCTGTTG 60.002 63.158 0.00 0.00 0.00 3.33
3486 7416 3.181423 TGGCTCCCTCCTGTTGTAATTTT 60.181 43.478 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 9.575868 TGGGAGTGTAAAATGTGTATAGAAAAA 57.424 29.630 0.00 0.00 0.00 1.94
131 132 9.575868 TTGGGAGTGTAAAATGTGTATAGAAAA 57.424 29.630 0.00 0.00 0.00 2.29
132 133 9.575868 TTTGGGAGTGTAAAATGTGTATAGAAA 57.424 29.630 0.00 0.00 0.00 2.52
133 134 9.747898 ATTTGGGAGTGTAAAATGTGTATAGAA 57.252 29.630 0.00 0.00 0.00 2.10
134 135 9.173021 CATTTGGGAGTGTAAAATGTGTATAGA 57.827 33.333 0.00 0.00 36.81 1.98
135 136 7.915397 GCATTTGGGAGTGTAAAATGTGTATAG 59.085 37.037 8.61 0.00 41.32 1.31
136 137 7.613801 AGCATTTGGGAGTGTAAAATGTGTATA 59.386 33.333 8.61 0.00 41.32 1.47
137 138 6.437162 AGCATTTGGGAGTGTAAAATGTGTAT 59.563 34.615 8.61 0.00 41.32 2.29
138 139 5.772672 AGCATTTGGGAGTGTAAAATGTGTA 59.227 36.000 8.61 0.00 41.32 2.90
139 140 4.588528 AGCATTTGGGAGTGTAAAATGTGT 59.411 37.500 8.61 0.00 41.32 3.72
140 141 5.138125 AGCATTTGGGAGTGTAAAATGTG 57.862 39.130 8.61 0.00 41.32 3.21
141 142 5.304101 TCAAGCATTTGGGAGTGTAAAATGT 59.696 36.000 8.61 0.00 41.32 2.71
142 143 5.782047 TCAAGCATTTGGGAGTGTAAAATG 58.218 37.500 0.00 0.00 41.88 2.32
143 144 6.610075 ATCAAGCATTTGGGAGTGTAAAAT 57.390 33.333 0.00 0.00 34.97 1.82
144 145 6.418057 AATCAAGCATTTGGGAGTGTAAAA 57.582 33.333 0.00 0.00 34.97 1.52
145 146 7.395772 TGATAATCAAGCATTTGGGAGTGTAAA 59.604 33.333 0.00 0.00 34.97 2.01
146 147 6.889177 TGATAATCAAGCATTTGGGAGTGTAA 59.111 34.615 0.00 0.00 34.97 2.41
147 148 6.422333 TGATAATCAAGCATTTGGGAGTGTA 58.578 36.000 0.00 0.00 34.97 2.90
148 149 5.263599 TGATAATCAAGCATTTGGGAGTGT 58.736 37.500 0.00 0.00 34.97 3.55
149 150 5.840243 TGATAATCAAGCATTTGGGAGTG 57.160 39.130 0.00 0.00 34.97 3.51
150 151 7.427989 AAATGATAATCAAGCATTTGGGAGT 57.572 32.000 0.00 0.00 39.84 3.85
151 152 8.726870 AAAAATGATAATCAAGCATTTGGGAG 57.273 30.769 2.36 0.00 40.28 4.30
152 153 8.319881 TGAAAAATGATAATCAAGCATTTGGGA 58.680 29.630 2.36 0.00 40.28 4.37
153 154 8.495361 TGAAAAATGATAATCAAGCATTTGGG 57.505 30.769 2.36 0.00 40.28 4.12
283 284 9.959749 AGTATATTTGAAAAATGTTGAACGTGT 57.040 25.926 0.00 0.00 0.00 4.49
424 425 7.872113 TTACGTTTTCTGTTACCCCTAAAAA 57.128 32.000 0.00 0.00 0.00 1.94
425 426 7.872113 TTTACGTTTTCTGTTACCCCTAAAA 57.128 32.000 0.00 0.00 0.00 1.52
426 427 9.566432 TTATTTACGTTTTCTGTTACCCCTAAA 57.434 29.630 0.00 0.00 0.00 1.85
427 428 9.566432 TTTATTTACGTTTTCTGTTACCCCTAA 57.434 29.630 0.00 0.00 0.00 2.69
428 429 9.737844 ATTTATTTACGTTTTCTGTTACCCCTA 57.262 29.630 0.00 0.00 0.00 3.53
429 430 8.640063 ATTTATTTACGTTTTCTGTTACCCCT 57.360 30.769 0.00 0.00 0.00 4.79
430 431 9.773328 GTATTTATTTACGTTTTCTGTTACCCC 57.227 33.333 0.00 0.00 0.00 4.95
447 448 9.218440 CCACAGCCAATTTTTCTGTATTTATTT 57.782 29.630 4.32 0.00 38.85 1.40
448 449 7.334171 GCCACAGCCAATTTTTCTGTATTTATT 59.666 33.333 4.32 0.00 38.85 1.40
449 450 6.818142 GCCACAGCCAATTTTTCTGTATTTAT 59.182 34.615 4.32 0.00 38.85 1.40
450 451 6.162777 GCCACAGCCAATTTTTCTGTATTTA 58.837 36.000 4.32 0.00 38.85 1.40
451 452 4.996758 GCCACAGCCAATTTTTCTGTATTT 59.003 37.500 4.32 0.00 38.85 1.40
452 453 4.568956 GCCACAGCCAATTTTTCTGTATT 58.431 39.130 4.32 0.00 38.85 1.89
453 454 4.192429 GCCACAGCCAATTTTTCTGTAT 57.808 40.909 4.32 0.00 38.85 2.29
454 455 3.658757 GCCACAGCCAATTTTTCTGTA 57.341 42.857 4.32 0.00 38.85 2.74
455 456 2.531522 GCCACAGCCAATTTTTCTGT 57.468 45.000 0.00 0.00 41.29 3.41
484 485 3.159858 TAAGATGGGCCGGCTACGC 62.160 63.158 28.56 13.89 39.22 4.42
485 486 1.300697 GTAAGATGGGCCGGCTACG 60.301 63.158 28.56 0.00 40.55 3.51
486 487 0.033642 GAGTAAGATGGGCCGGCTAC 59.966 60.000 28.56 19.20 0.00 3.58
487 488 1.461091 CGAGTAAGATGGGCCGGCTA 61.461 60.000 28.56 16.71 0.00 3.93
488 489 2.797278 CGAGTAAGATGGGCCGGCT 61.797 63.158 28.56 6.33 0.00 5.52
489 490 2.280186 CGAGTAAGATGGGCCGGC 60.280 66.667 21.18 21.18 0.00 6.13
490 491 2.280186 GCGAGTAAGATGGGCCGG 60.280 66.667 0.00 0.00 0.00 6.13
491 492 2.280186 GGCGAGTAAGATGGGCCG 60.280 66.667 0.00 0.00 33.58 6.13
492 493 2.111251 GGGCGAGTAAGATGGGCC 59.889 66.667 0.00 0.00 43.01 5.80
493 494 1.984288 AAGGGGCGAGTAAGATGGGC 61.984 60.000 0.00 0.00 0.00 5.36
494 495 0.106894 GAAGGGGCGAGTAAGATGGG 59.893 60.000 0.00 0.00 0.00 4.00
495 496 0.830648 TGAAGGGGCGAGTAAGATGG 59.169 55.000 0.00 0.00 0.00 3.51
496 497 1.808133 GCTGAAGGGGCGAGTAAGATG 60.808 57.143 0.00 0.00 0.00 2.90
497 498 0.466124 GCTGAAGGGGCGAGTAAGAT 59.534 55.000 0.00 0.00 0.00 2.40
498 499 1.898154 GCTGAAGGGGCGAGTAAGA 59.102 57.895 0.00 0.00 0.00 2.10
499 500 4.522971 GCTGAAGGGGCGAGTAAG 57.477 61.111 0.00 0.00 0.00 2.34
506 507 2.125350 CTGACTCGCTGAAGGGGC 60.125 66.667 0.00 0.00 0.00 5.80
507 508 0.108424 CTTCTGACTCGCTGAAGGGG 60.108 60.000 0.00 0.00 44.34 4.79
508 509 0.891373 TCTTCTGACTCGCTGAAGGG 59.109 55.000 10.76 0.00 46.58 3.95
509 510 1.735369 GCTCTTCTGACTCGCTGAAGG 60.735 57.143 10.76 5.04 46.58 3.46
511 512 0.244994 GGCTCTTCTGACTCGCTGAA 59.755 55.000 0.00 0.00 33.97 3.02
512 513 1.886585 GGCTCTTCTGACTCGCTGA 59.113 57.895 0.00 0.00 0.00 4.26
513 514 1.515952 CGGCTCTTCTGACTCGCTG 60.516 63.158 0.00 0.00 0.00 5.18
514 515 0.677098 TACGGCTCTTCTGACTCGCT 60.677 55.000 0.00 0.00 0.00 4.93
515 516 0.382515 ATACGGCTCTTCTGACTCGC 59.617 55.000 0.00 0.00 0.00 5.03
516 517 1.862008 GCATACGGCTCTTCTGACTCG 60.862 57.143 0.00 0.00 40.25 4.18
517 518 1.846541 GCATACGGCTCTTCTGACTC 58.153 55.000 0.00 0.00 40.25 3.36
528 529 1.613925 TGGTCAGAGATAGCATACGGC 59.386 52.381 0.00 0.00 45.30 5.68
529 530 3.367806 CCATGGTCAGAGATAGCATACGG 60.368 52.174 2.57 0.00 33.49 4.02
530 531 3.256879 ACCATGGTCAGAGATAGCATACG 59.743 47.826 13.00 0.00 33.49 3.06
531 532 4.562347 CCACCATGGTCAGAGATAGCATAC 60.562 50.000 16.53 0.00 33.49 2.39
532 533 3.580022 CCACCATGGTCAGAGATAGCATA 59.420 47.826 16.53 0.00 33.49 3.14
533 534 2.371179 CCACCATGGTCAGAGATAGCAT 59.629 50.000 16.53 0.00 35.53 3.79
534 535 1.764723 CCACCATGGTCAGAGATAGCA 59.235 52.381 16.53 0.00 31.35 3.49
535 536 1.071385 CCCACCATGGTCAGAGATAGC 59.929 57.143 16.53 0.00 35.17 2.97
542 543 1.077930 CTCAGCCCACCATGGTCAG 60.078 63.158 16.53 10.55 35.17 3.51
573 574 2.992114 AGTCTGCCGCTCCTTCGT 60.992 61.111 0.00 0.00 0.00 3.85
574 575 2.202676 GAGTCTGCCGCTCCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
575 576 2.185608 GGAGTCTGCCGCTCCTTC 59.814 66.667 10.06 0.00 46.71 3.46
579 580 4.200283 CGGAGGAGTCTGCCGCTC 62.200 72.222 10.43 0.00 38.46 5.03
580 581 4.742649 TCGGAGGAGTCTGCCGCT 62.743 66.667 16.14 0.00 44.45 5.52
581 582 4.200283 CTCGGAGGAGTCTGCCGC 62.200 72.222 16.14 0.00 44.45 6.53
582 583 4.200283 GCTCGGAGGAGTCTGCCG 62.200 72.222 15.19 15.19 46.08 5.69
583 584 4.200283 CGCTCGGAGGAGTCTGCC 62.200 72.222 7.20 0.00 42.53 4.85
584 585 4.863925 GCGCTCGGAGGAGTCTGC 62.864 72.222 7.20 0.00 42.53 4.26
585 586 3.408501 CTGCGCTCGGAGGAGTCTG 62.409 68.421 9.73 0.00 42.53 3.51
586 587 3.137459 CTGCGCTCGGAGGAGTCT 61.137 66.667 9.73 0.00 42.53 3.24
587 588 4.863925 GCTGCGCTCGGAGGAGTC 62.864 72.222 9.73 0.00 42.53 3.36
634 636 1.209910 GGAGTAAGCTAGCTTCGCGC 61.210 60.000 32.51 24.89 37.47 6.86
649 651 0.892358 TTCGCACCGTGTAGAGGAGT 60.892 55.000 0.00 0.00 0.00 3.85
655 657 1.520787 GGGGATTCGCACCGTGTAG 60.521 63.158 0.00 0.00 0.00 2.74
713 727 1.397390 TTAATCGGCCGGGAGAGGAC 61.397 60.000 27.83 0.00 35.43 3.85
747 761 1.962306 GAACACTAACCGGCGGCAA 60.962 57.895 28.71 13.73 0.00 4.52
783 798 2.582052 AGATTCGGAGTTTTGGTTGCA 58.418 42.857 0.00 0.00 0.00 4.08
784 799 3.643159 AAGATTCGGAGTTTTGGTTGC 57.357 42.857 0.00 0.00 0.00 4.17
839 854 0.170561 AGATCCGAGTCAACGAACGG 59.829 55.000 0.00 0.00 45.61 4.44
847 862 6.264744 CCAGTAGGTTAATTAGATCCGAGTCA 59.735 42.308 0.00 0.00 0.00 3.41
888 905 0.521735 GTGAAAGTTGGATCACCGCC 59.478 55.000 0.00 0.00 40.00 6.13
890 907 1.806542 CCAGTGAAAGTTGGATCACCG 59.193 52.381 3.12 0.00 45.55 4.94
910 962 2.412847 CGGCCAAAGTGACGAATTTCTC 60.413 50.000 2.24 0.00 0.00 2.87
918 970 1.901650 GAGCTTCGGCCAAAGTGACG 61.902 60.000 5.10 0.00 43.01 4.35
923 975 0.393537 ATCAGGAGCTTCGGCCAAAG 60.394 55.000 2.24 0.00 43.01 2.77
979 1031 2.304092 AGTGTATTATCCTGGCGACGA 58.696 47.619 0.00 0.00 0.00 4.20
981 1033 4.038883 ACCTAAGTGTATTATCCTGGCGAC 59.961 45.833 0.00 0.00 0.00 5.19
991 1043 5.414454 CAGCTTTGGCAACCTAAGTGTATTA 59.586 40.000 0.00 0.00 38.32 0.98
1001 1053 1.109323 GTGTCCAGCTTTGGCAACCT 61.109 55.000 0.00 0.00 41.70 3.50
1002 1054 1.109323 AGTGTCCAGCTTTGGCAACC 61.109 55.000 0.00 0.00 41.70 3.77
1004 1056 1.108727 CCAGTGTCCAGCTTTGGCAA 61.109 55.000 0.00 0.00 41.70 4.52
1047 1100 1.534595 CTCAGCCTGTGCAAAACTCTC 59.465 52.381 0.00 0.00 41.13 3.20
1055 1108 0.318441 GTCAGTACTCAGCCTGTGCA 59.682 55.000 0.00 0.00 41.13 4.57
1056 1109 0.318441 TGTCAGTACTCAGCCTGTGC 59.682 55.000 0.00 0.00 37.95 4.57
1057 1110 2.820059 TTGTCAGTACTCAGCCTGTG 57.180 50.000 0.00 0.00 0.00 3.66
1058 1111 2.899900 TCATTGTCAGTACTCAGCCTGT 59.100 45.455 0.00 0.00 0.00 4.00
1059 1112 3.257393 GTCATTGTCAGTACTCAGCCTG 58.743 50.000 0.00 0.00 0.00 4.85
1060 1113 2.094494 CGTCATTGTCAGTACTCAGCCT 60.094 50.000 0.00 0.00 0.00 4.58
1061 1114 2.094700 TCGTCATTGTCAGTACTCAGCC 60.095 50.000 0.00 0.00 0.00 4.85
1062 1115 2.917971 GTCGTCATTGTCAGTACTCAGC 59.082 50.000 0.00 0.00 0.00 4.26
1063 1116 4.160736 TGTCGTCATTGTCAGTACTCAG 57.839 45.455 0.00 0.00 0.00 3.35
1064 1117 3.568430 ACTGTCGTCATTGTCAGTACTCA 59.432 43.478 0.00 0.00 39.01 3.41
1065 1118 3.914966 CACTGTCGTCATTGTCAGTACTC 59.085 47.826 0.00 0.00 38.79 2.59
1066 1119 3.305403 CCACTGTCGTCATTGTCAGTACT 60.305 47.826 0.00 0.00 38.79 2.73
1067 1120 2.987149 CCACTGTCGTCATTGTCAGTAC 59.013 50.000 0.00 0.00 38.79 2.73
1068 1121 2.029380 CCCACTGTCGTCATTGTCAGTA 60.029 50.000 0.00 0.00 38.79 2.74
1069 1122 1.270305 CCCACTGTCGTCATTGTCAGT 60.270 52.381 0.01 0.00 41.02 3.41
1070 1123 1.432514 CCCACTGTCGTCATTGTCAG 58.567 55.000 0.01 0.00 0.00 3.51
1182 1235 1.590792 GTATACGCGGAGTGCCACC 60.591 63.158 12.47 0.00 45.12 4.61
1183 1236 1.590792 GGTATACGCGGAGTGCCAC 60.591 63.158 12.47 0.00 45.12 5.01
1257 1310 2.588877 CGCCAGCGGATTCGGAAT 60.589 61.111 2.19 2.19 36.79 3.01
1306 1359 3.057734 GGTCAACTTGTACGACCTCTTG 58.942 50.000 9.02 0.00 44.82 3.02
1335 1388 2.011741 TAGTGCGGATAGGTGTGGCG 62.012 60.000 0.00 0.00 0.00 5.69
1342 1395 1.338337 CAGACACCTAGTGCGGATAGG 59.662 57.143 9.70 9.70 44.62 2.57
1400 1453 2.093075 ACAAGGTGCATCTCAGATCTGG 60.093 50.000 22.42 13.07 0.00 3.86
1789 1851 6.073980 CCACTGAAATCAAAAGCATGAAGTTG 60.074 38.462 0.00 0.00 32.06 3.16
1864 1926 4.320023 TGAACAACGTATGTGTAGCCAAT 58.680 39.130 0.00 0.00 42.99 3.16
1896 1958 1.062587 CAAATAAGAAGCAGACCGCCG 59.937 52.381 0.00 0.00 44.04 6.46
2037 2104 0.251474 ACAGCACATGGTCAGGCAAT 60.251 50.000 0.00 0.00 0.00 3.56
2189 2257 9.177608 TGGAGTAGAAATTATCCAAGTTCATTG 57.822 33.333 1.13 0.00 40.39 2.82
2308 2376 6.099269 CCATTGATCCATTTTCTTCAATCCCT 59.901 38.462 0.00 0.00 36.84 4.20
2319 2387 7.771826 GGTTCATTGAATCCATTGATCCATTTT 59.228 33.333 1.78 0.00 39.72 1.82
2353 2425 2.092914 ACAGTAAGATAGCAAGCCACCC 60.093 50.000 0.00 0.00 0.00 4.61
2354 2426 3.198872 GACAGTAAGATAGCAAGCCACC 58.801 50.000 0.00 0.00 0.00 4.61
2365 2446 2.455674 TGCAGCAACGACAGTAAGAT 57.544 45.000 0.00 0.00 0.00 2.40
2366 2447 2.135139 CTTGCAGCAACGACAGTAAGA 58.865 47.619 2.83 0.00 0.00 2.10
2382 2463 6.855836 TGATTATTTTGTGGATGACTCTTGC 58.144 36.000 0.00 0.00 0.00 4.01
2409 2497 1.134401 CACACACAGTCCAAGTGGTCT 60.134 52.381 0.00 0.00 41.21 3.85
2416 2504 0.180171 CCCTCACACACACAGTCCAA 59.820 55.000 0.00 0.00 0.00 3.53
2421 2509 3.349006 GCGCCCTCACACACACAG 61.349 66.667 0.00 0.00 0.00 3.66
2425 2513 3.044305 GAGTGCGCCCTCACACAC 61.044 66.667 15.41 0.00 39.30 3.82
2438 2526 1.134580 ACCAGGATCAAGCGATGAGTG 60.135 52.381 0.00 0.17 42.53 3.51
2466 2554 3.523564 AGCCAAGTAGGGAAAATCTAGCA 59.476 43.478 0.00 0.00 38.09 3.49
2475 2563 5.772393 TTTATTCAGAGCCAAGTAGGGAA 57.228 39.130 0.00 0.00 38.09 3.97
2476 2564 5.975988 ATTTATTCAGAGCCAAGTAGGGA 57.024 39.130 0.00 0.00 38.09 4.20
2482 2570 8.734386 ACTCAAAACTATTTATTCAGAGCCAAG 58.266 33.333 0.00 0.00 0.00 3.61
2559 2648 8.960591 ACGGAAAAATGATAAGAACAAGATCAT 58.039 29.630 0.00 0.00 41.09 2.45
2560 2649 8.236586 CACGGAAAAATGATAAGAACAAGATCA 58.763 33.333 0.00 0.00 34.25 2.92
2561 2650 7.698130 CCACGGAAAAATGATAAGAACAAGATC 59.302 37.037 0.00 0.00 0.00 2.75
2562 2651 7.176690 ACCACGGAAAAATGATAAGAACAAGAT 59.823 33.333 0.00 0.00 0.00 2.40
2563 2652 6.488683 ACCACGGAAAAATGATAAGAACAAGA 59.511 34.615 0.00 0.00 0.00 3.02
2564 2653 6.677913 ACCACGGAAAAATGATAAGAACAAG 58.322 36.000 0.00 0.00 0.00 3.16
2565 2654 6.642707 ACCACGGAAAAATGATAAGAACAA 57.357 33.333 0.00 0.00 0.00 2.83
2566 2655 7.931578 ATACCACGGAAAAATGATAAGAACA 57.068 32.000 0.00 0.00 0.00 3.18
2567 2656 9.285770 GAAATACCACGGAAAAATGATAAGAAC 57.714 33.333 0.00 0.00 0.00 3.01
2575 2664 5.572896 GCAGAAGAAATACCACGGAAAAATG 59.427 40.000 0.00 0.00 0.00 2.32
2583 2672 2.724839 GCAACGCAGAAGAAATACCACG 60.725 50.000 0.00 0.00 0.00 4.94
2586 2675 2.742053 TGAGCAACGCAGAAGAAATACC 59.258 45.455 0.00 0.00 0.00 2.73
2601 2690 6.424812 CCACAATAAGATATCGACATGAGCAA 59.575 38.462 0.00 0.00 0.00 3.91
2610 2699 5.815222 CCAACACACCACAATAAGATATCGA 59.185 40.000 0.00 0.00 0.00 3.59
2612 2701 8.677148 ATACCAACACACCACAATAAGATATC 57.323 34.615 0.00 0.00 0.00 1.63
2616 2705 8.103935 TGAATATACCAACACACCACAATAAGA 58.896 33.333 0.00 0.00 0.00 2.10
2620 2709 7.395772 TCAATGAATATACCAACACACCACAAT 59.604 33.333 0.00 0.00 0.00 2.71
2621 2710 6.717084 TCAATGAATATACCAACACACCACAA 59.283 34.615 0.00 0.00 0.00 3.33
2622 2711 6.241645 TCAATGAATATACCAACACACCACA 58.758 36.000 0.00 0.00 0.00 4.17
2623 2712 6.751514 TCAATGAATATACCAACACACCAC 57.248 37.500 0.00 0.00 0.00 4.16
2624 2713 7.833682 AGAATCAATGAATATACCAACACACCA 59.166 33.333 0.00 0.00 0.00 4.17
2625 2714 8.225603 AGAATCAATGAATATACCAACACACC 57.774 34.615 0.00 0.00 0.00 4.16
2626 2715 9.722056 GAAGAATCAATGAATATACCAACACAC 57.278 33.333 0.00 0.00 0.00 3.82
2627 2716 9.460019 TGAAGAATCAATGAATATACCAACACA 57.540 29.630 0.00 0.00 30.99 3.72
2640 2729 9.634163 CATTCAGAAACAATGAAGAATCAATGA 57.366 29.630 1.19 0.00 38.51 2.57
2641 2730 9.634163 TCATTCAGAAACAATGAAGAATCAATG 57.366 29.630 0.00 0.00 41.37 2.82
2643 2732 9.850628 GATCATTCAGAAACAATGAAGAATCAA 57.149 29.630 0.00 0.00 42.23 2.57
2644 2733 9.239551 AGATCATTCAGAAACAATGAAGAATCA 57.760 29.630 0.00 0.00 42.23 2.57
2645 2734 9.504710 CAGATCATTCAGAAACAATGAAGAATC 57.495 33.333 0.00 0.00 42.23 2.52
2646 2735 9.239551 TCAGATCATTCAGAAACAATGAAGAAT 57.760 29.630 0.00 0.00 42.23 2.40
2647 2736 8.625786 TCAGATCATTCAGAAACAATGAAGAA 57.374 30.769 0.00 0.00 42.23 2.52
2648 2737 8.674607 CATCAGATCATTCAGAAACAATGAAGA 58.325 33.333 0.00 0.34 42.23 2.87
2649 2738 7.432545 GCATCAGATCATTCAGAAACAATGAAG 59.567 37.037 0.00 0.00 42.23 3.02
2650 2739 7.255569 GCATCAGATCATTCAGAAACAATGAA 58.744 34.615 0.00 0.00 42.23 2.57
2651 2740 6.457799 CGCATCAGATCATTCAGAAACAATGA 60.458 38.462 0.00 0.00 42.93 2.57
2652 2741 5.681543 CGCATCAGATCATTCAGAAACAATG 59.318 40.000 0.00 0.00 33.22 2.82
2666 2755 5.725110 ACTGATTACAAACGCATCAGATC 57.275 39.130 13.92 0.00 44.64 2.75
2743 2832 2.128771 TCCCTGCTGCTATTCCAAAC 57.871 50.000 0.00 0.00 0.00 2.93
2766 2855 1.642112 TTGGAAGGAAATGCCATGCA 58.358 45.000 0.00 0.00 44.86 3.96
2793 2882 5.772521 ACAACTTTCTCATATTGCCAACAC 58.227 37.500 0.00 0.00 0.00 3.32
2794 2883 5.769662 AGACAACTTTCTCATATTGCCAACA 59.230 36.000 0.00 0.00 0.00 3.33
2799 2888 5.947443 AGCAAGACAACTTTCTCATATTGC 58.053 37.500 0.00 0.00 40.50 3.56
2800 2889 7.814642 AGAAGCAAGACAACTTTCTCATATTG 58.185 34.615 0.00 0.00 33.70 1.90
2804 2893 6.512415 CGAAAGAAGCAAGACAACTTTCTCAT 60.512 38.462 0.15 0.00 42.03 2.90
2807 2896 4.636206 ACGAAAGAAGCAAGACAACTTTCT 59.364 37.500 0.15 0.00 42.03 2.52
2815 2904 2.866762 AGTCACACGAAAGAAGCAAGAC 59.133 45.455 0.00 0.00 0.00 3.01
2817 2906 3.546815 CCAAGTCACACGAAAGAAGCAAG 60.547 47.826 0.00 0.00 0.00 4.01
2830 2919 4.522405 CCAATCCACAATTACCAAGTCACA 59.478 41.667 0.00 0.00 0.00 3.58
2849 2938 6.745794 TTCTCCTTTTCCACAAAATCCAAT 57.254 33.333 0.00 0.00 30.91 3.16
2859 2948 1.280998 TCCCCGATTCTCCTTTTCCAC 59.719 52.381 0.00 0.00 0.00 4.02
2872 2961 0.625849 AGGCAGACAAAATCCCCGAT 59.374 50.000 0.00 0.00 0.00 4.18
2875 2964 1.753073 CATGAGGCAGACAAAATCCCC 59.247 52.381 0.00 0.00 0.00 4.81
2890 2979 4.576053 TCAACAGACCACAAAGAACATGAG 59.424 41.667 0.00 0.00 0.00 2.90
2893 2982 4.780815 TCTCAACAGACCACAAAGAACAT 58.219 39.130 0.00 0.00 0.00 2.71
2908 4869 2.038952 ACAGTATGCAGCCTTCTCAACA 59.961 45.455 0.00 0.00 42.53 3.33
2944 4905 7.450074 TGAACATTATGTCACACTTACCTTCT 58.550 34.615 0.00 0.00 0.00 2.85
2953 4914 5.466728 ACACACTCTGAACATTATGTCACAC 59.533 40.000 0.00 0.00 0.00 3.82
2954 4915 5.610398 ACACACTCTGAACATTATGTCACA 58.390 37.500 0.00 1.97 0.00 3.58
2984 4945 4.523083 ACTCACAGGTGCACTAAAAGAAA 58.477 39.130 17.98 0.00 0.00 2.52
2991 4952 8.482943 ACATAAATAATACTCACAGGTGCACTA 58.517 33.333 17.98 0.00 0.00 2.74
2998 4959 8.429641 ACTACCCACATAAATAATACTCACAGG 58.570 37.037 0.00 0.00 0.00 4.00
3007 4968 9.959721 CATAGGCTTACTACCCACATAAATAAT 57.040 33.333 0.00 0.00 33.70 1.28
3008 4969 8.940982 ACATAGGCTTACTACCCACATAAATAA 58.059 33.333 0.00 0.00 33.70 1.40
3010 4971 7.388638 ACATAGGCTTACTACCCACATAAAT 57.611 36.000 0.00 0.00 33.70 1.40
3012 4973 5.306160 GGACATAGGCTTACTACCCACATAA 59.694 44.000 0.00 0.00 33.70 1.90
3014 4975 3.646637 GGACATAGGCTTACTACCCACAT 59.353 47.826 0.00 0.00 33.70 3.21
3015 4976 3.036091 GGACATAGGCTTACTACCCACA 58.964 50.000 0.00 0.00 33.70 4.17
3016 4977 2.367894 GGGACATAGGCTTACTACCCAC 59.632 54.545 0.00 0.00 36.16 4.61
3017 4978 2.022820 TGGGACATAGGCTTACTACCCA 60.023 50.000 12.65 12.65 41.04 4.51
3018 4979 2.686119 TGGGACATAGGCTTACTACCC 58.314 52.381 0.00 0.62 36.49 3.69
3036 6962 6.690098 CAGAAATATTTGCGAGTTCTTCATGG 59.310 38.462 5.17 0.00 0.00 3.66
3038 6964 6.261118 GCAGAAATATTTGCGAGTTCTTCAT 58.739 36.000 5.17 0.00 0.00 2.57
3050 6976 7.099266 TCACATAACCTGGCAGAAATATTTG 57.901 36.000 17.94 13.37 0.00 2.32
3062 6988 4.949856 AGGTAAGCAAATCACATAACCTGG 59.050 41.667 0.00 0.00 34.86 4.45
3162 7088 5.157781 TGAAGTTCAAAAAGTGTTGGAACG 58.842 37.500 2.20 0.00 0.00 3.95
3172 7098 6.233500 GCGACAAAAACTGAAGTTCAAAAAG 58.766 36.000 7.06 0.00 37.25 2.27
3177 7103 2.223157 CGGCGACAAAAACTGAAGTTCA 60.223 45.455 0.00 5.25 37.25 3.18
3178 7104 2.372350 CGGCGACAAAAACTGAAGTTC 58.628 47.619 0.00 0.00 37.25 3.01
3183 7109 1.265635 CAATCCGGCGACAAAAACTGA 59.734 47.619 9.30 0.00 0.00 3.41
3185 7111 1.001815 CACAATCCGGCGACAAAAACT 60.002 47.619 9.30 0.00 0.00 2.66
3190 7116 2.032634 GCTCACAATCCGGCGACAA 61.033 57.895 9.30 0.00 0.00 3.18
3194 7120 2.892425 GGAGCTCACAATCCGGCG 60.892 66.667 17.19 0.00 0.00 6.46
3195 7121 0.749454 AATGGAGCTCACAATCCGGC 60.749 55.000 17.19 0.00 38.52 6.13
3196 7122 1.402968 CAAATGGAGCTCACAATCCGG 59.597 52.381 17.19 0.00 38.52 5.14
3198 7124 1.135721 GCCAAATGGAGCTCACAATCC 59.864 52.381 17.19 0.00 37.39 3.01
3214 7140 2.103941 GGTTTGGGAAACATCAAGCCAA 59.896 45.455 0.00 0.00 41.74 4.52
3220 7146 4.026744 TGAAACTGGTTTGGGAAACATCA 58.973 39.130 3.30 0.00 43.15 3.07
3261 7187 3.535561 CAAGAGGATTCGCAGGTACATT 58.464 45.455 0.00 0.00 0.00 2.71
3262 7188 2.743183 GCAAGAGGATTCGCAGGTACAT 60.743 50.000 0.00 0.00 0.00 2.29
3288 7214 4.920927 AGGCACGCACATATGTTTAAAAAC 59.079 37.500 5.37 0.00 39.33 2.43
3293 7219 2.979240 TCAGGCACGCACATATGTTTA 58.021 42.857 5.37 0.00 0.00 2.01
3294 7220 1.819928 TCAGGCACGCACATATGTTT 58.180 45.000 5.37 0.00 0.00 2.83
3300 7226 0.321919 AACAGATCAGGCACGCACAT 60.322 50.000 0.00 0.00 0.00 3.21
3305 7231 2.084610 TCTTCAACAGATCAGGCACG 57.915 50.000 0.00 0.00 0.00 5.34
3312 7238 7.500992 TCCATACCATACTTCTTCAACAGATC 58.499 38.462 0.00 0.00 0.00 2.75
3313 7239 7.437713 TCCATACCATACTTCTTCAACAGAT 57.562 36.000 0.00 0.00 0.00 2.90
3320 7246 9.566432 AATGAAGAATCCATACCATACTTCTTC 57.434 33.333 13.27 13.27 44.30 2.87
3334 7260 4.638865 CAGTGATGCAGAATGAAGAATCCA 59.361 41.667 0.00 0.00 39.69 3.41
3339 7265 7.277396 TGATATTCAGTGATGCAGAATGAAGA 58.723 34.615 14.40 11.33 39.69 2.87
3340 7266 7.492352 TGATATTCAGTGATGCAGAATGAAG 57.508 36.000 14.40 0.00 39.69 3.02
3346 7275 5.010415 ACTCGATGATATTCAGTGATGCAGA 59.990 40.000 0.00 0.00 0.00 4.26
3347 7276 5.228665 ACTCGATGATATTCAGTGATGCAG 58.771 41.667 0.00 0.00 0.00 4.41
3364 7293 3.895232 ATCCTTGCTACACAACTCGAT 57.105 42.857 0.00 0.00 33.68 3.59
3367 7296 8.045176 AGAATTAAATCCTTGCTACACAACTC 57.955 34.615 0.00 0.00 33.68 3.01
3438 7368 3.181483 CCAAGATATCCTTTGTGCCTTGC 60.181 47.826 0.00 0.00 31.42 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.