Multiple sequence alignment - TraesCS2A01G049400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G049400 chr2A 100.000 4136 0 0 1 4136 19074020 19069885 0.000000e+00 7638.0
1 TraesCS2A01G049400 chr2A 81.152 2170 347 28 1097 3222 19050139 19047988 0.000000e+00 1685.0
2 TraesCS2A01G049400 chr2A 85.165 937 101 14 3232 4136 19045398 19044468 0.000000e+00 926.0
3 TraesCS2A01G049400 chr2D 94.778 3447 137 16 728 4136 17793203 17789762 0.000000e+00 5328.0
4 TraesCS2A01G049400 chr2D 89.437 142 10 5 323 462 17768514 17768376 1.530000e-39 174.0
5 TraesCS2A01G049400 chr2D 93.333 45 3 0 572 616 17793310 17793266 2.670000e-07 67.6
6 TraesCS2A01G049400 chr2B 90.791 2541 198 19 725 3239 29184487 29187017 0.000000e+00 3363.0
7 TraesCS2A01G049400 chr2B 86.154 2470 274 33 725 3154 29251198 29253639 0.000000e+00 2604.0
8 TraesCS2A01G049400 chr2B 90.672 922 59 12 3232 4135 29254050 29254962 0.000000e+00 1201.0
9 TraesCS2A01G049400 chr2B 90.409 928 60 12 3232 4136 29187804 29188725 0.000000e+00 1194.0
10 TraesCS2A01G049400 chr2B 80.631 1616 246 35 725 2303 29533483 29535068 0.000000e+00 1188.0
11 TraesCS2A01G049400 chr2B 86.937 911 82 15 2356 3238 29535065 29535966 0.000000e+00 989.0
12 TraesCS2A01G049400 chr2B 87.770 139 6 1 325 463 29533219 29533346 7.160000e-33 152.0
13 TraesCS2A01G049400 chr2B 100.000 32 0 0 6 37 29533182 29533213 4.470000e-05 60.2
14 TraesCS2A01G049400 chr1D 94.792 288 13 1 42 327 349468403 349468690 8.160000e-122 448.0
15 TraesCS2A01G049400 chr1D 87.640 89 9 2 469 556 100901839 100901926 7.310000e-18 102.0
16 TraesCS2A01G049400 chr6D 94.483 290 13 2 41 327 438835198 438834909 1.060000e-120 444.0
17 TraesCS2A01G049400 chr6D 93.581 296 17 1 33 326 420715862 420715567 1.360000e-119 440.0
18 TraesCS2A01G049400 chr6D 94.097 288 15 1 41 326 100351652 100351939 1.770000e-118 436.0
19 TraesCS2A01G049400 chr3A 94.464 289 14 1 40 326 703773267 703772979 1.060000e-120 444.0
20 TraesCS2A01G049400 chr7A 94.178 292 13 3 35 324 89365667 89365378 3.790000e-120 442.0
21 TraesCS2A01G049400 chr7D 94.700 283 13 1 44 324 587092743 587092461 4.910000e-119 438.0
22 TraesCS2A01G049400 chr4A 94.700 283 13 1 44 324 548783353 548783071 4.910000e-119 438.0
23 TraesCS2A01G049400 chr4A 90.526 95 6 2 463 556 627736563 627736655 5.610000e-24 122.0
24 TraesCS2A01G049400 chr4A 86.869 99 10 3 460 556 627701657 627701754 1.570000e-19 108.0
25 TraesCS2A01G049400 chr3D 94.425 287 13 2 40 324 43027669 43027954 4.910000e-119 438.0
26 TraesCS2A01G049400 chr3B 89.011 91 9 1 463 553 463090859 463090948 1.220000e-20 111.0
27 TraesCS2A01G049400 chr7B 91.139 79 7 0 463 541 59506 59428 1.570000e-19 108.0
28 TraesCS2A01G049400 chr5A 89.412 85 7 2 469 553 195578492 195578410 5.650000e-19 106.0
29 TraesCS2A01G049400 chr4B 88.506 87 6 4 469 553 641801927 641802011 7.310000e-18 102.0
30 TraesCS2A01G049400 chr5B 86.813 91 9 3 463 553 710319706 710319793 9.460000e-17 99.0
31 TraesCS2A01G049400 chr6A 84.848 99 11 3 460 556 463543428 463543524 3.400000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G049400 chr2A 19069885 19074020 4135 True 7638.0 7638 100.0000 1 4136 1 chr2A.!!$R1 4135
1 TraesCS2A01G049400 chr2A 19044468 19050139 5671 True 1305.5 1685 83.1585 1097 4136 2 chr2A.!!$R2 3039
2 TraesCS2A01G049400 chr2D 17789762 17793310 3548 True 2697.8 5328 94.0555 572 4136 2 chr2D.!!$R2 3564
3 TraesCS2A01G049400 chr2B 29184487 29188725 4238 False 2278.5 3363 90.6000 725 4136 2 chr2B.!!$F1 3411
4 TraesCS2A01G049400 chr2B 29251198 29254962 3764 False 1902.5 2604 88.4130 725 4135 2 chr2B.!!$F2 3410
5 TraesCS2A01G049400 chr2B 29533182 29535966 2784 False 597.3 1188 88.8345 6 3238 4 chr2B.!!$F3 3232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 865 0.105964 CGATGCAACTCGGGGGATAA 59.894 55.000 1.69 0.0 35.03 1.75 F
2129 2175 2.162008 CACAATGTGCATTCGGTGATGA 59.838 45.455 0.00 0.0 30.64 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2196 1.821216 TCGGCCAATTTCTTCCAGTC 58.179 50.0 2.24 0.0 0.0 3.51 R
3836 6543 1.188219 TGGCCTGGACACTGAGAGAC 61.188 60.0 3.32 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.921786 TGGGAACAAGAACAATGATACTAAG 57.078 36.000 0.00 0.00 37.44 2.18
45 46 7.685481 TGGGAACAAGAACAATGATACTAAGA 58.315 34.615 0.00 0.00 37.44 2.10
46 47 7.824289 TGGGAACAAGAACAATGATACTAAGAG 59.176 37.037 0.00 0.00 37.44 2.85
47 48 7.281100 GGGAACAAGAACAATGATACTAAGAGG 59.719 40.741 0.00 0.00 0.00 3.69
48 49 7.281100 GGAACAAGAACAATGATACTAAGAGGG 59.719 40.741 0.00 0.00 0.00 4.30
49 50 7.259088 ACAAGAACAATGATACTAAGAGGGT 57.741 36.000 0.00 0.00 0.00 4.34
50 51 7.106239 ACAAGAACAATGATACTAAGAGGGTG 58.894 38.462 0.00 0.00 0.00 4.61
51 52 6.875972 AGAACAATGATACTAAGAGGGTGT 57.124 37.500 0.00 0.00 0.00 4.16
52 53 7.259088 AGAACAATGATACTAAGAGGGTGTT 57.741 36.000 0.00 0.00 0.00 3.32
53 54 7.690256 AGAACAATGATACTAAGAGGGTGTTT 58.310 34.615 0.00 0.00 0.00 2.83
54 55 7.607991 AGAACAATGATACTAAGAGGGTGTTTG 59.392 37.037 0.00 0.00 0.00 2.93
55 56 6.779860 ACAATGATACTAAGAGGGTGTTTGT 58.220 36.000 0.00 0.00 0.00 2.83
56 57 7.231467 ACAATGATACTAAGAGGGTGTTTGTT 58.769 34.615 0.00 0.00 0.00 2.83
57 58 7.724061 ACAATGATACTAAGAGGGTGTTTGTTT 59.276 33.333 0.00 0.00 0.00 2.83
58 59 7.923414 ATGATACTAAGAGGGTGTTTGTTTC 57.077 36.000 0.00 0.00 0.00 2.78
59 60 6.235664 TGATACTAAGAGGGTGTTTGTTTCC 58.764 40.000 0.00 0.00 0.00 3.13
60 61 4.513406 ACTAAGAGGGTGTTTGTTTCCA 57.487 40.909 0.00 0.00 0.00 3.53
61 62 4.461198 ACTAAGAGGGTGTTTGTTTCCAG 58.539 43.478 0.00 0.00 0.00 3.86
62 63 2.364972 AGAGGGTGTTTGTTTCCAGG 57.635 50.000 0.00 0.00 0.00 4.45
63 64 1.133482 AGAGGGTGTTTGTTTCCAGGG 60.133 52.381 0.00 0.00 0.00 4.45
64 65 0.930726 AGGGTGTTTGTTTCCAGGGA 59.069 50.000 0.00 0.00 0.00 4.20
65 66 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
66 67 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
67 68 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
68 69 3.558033 GGTGTTTGTTTCCAGGGACTTA 58.442 45.455 0.00 0.00 34.60 2.24
69 70 4.149598 GGTGTTTGTTTCCAGGGACTTAT 58.850 43.478 0.00 0.00 34.60 1.73
70 71 4.587262 GGTGTTTGTTTCCAGGGACTTATT 59.413 41.667 0.00 0.00 34.60 1.40
71 72 5.508994 GGTGTTTGTTTCCAGGGACTTATTG 60.509 44.000 0.00 0.00 34.60 1.90
72 73 5.300792 GTGTTTGTTTCCAGGGACTTATTGA 59.699 40.000 0.00 0.00 34.60 2.57
73 74 6.015434 GTGTTTGTTTCCAGGGACTTATTGAT 60.015 38.462 0.00 0.00 34.60 2.57
74 75 6.553100 TGTTTGTTTCCAGGGACTTATTGATT 59.447 34.615 0.00 0.00 34.60 2.57
75 76 7.070571 TGTTTGTTTCCAGGGACTTATTGATTT 59.929 33.333 0.00 0.00 34.60 2.17
76 77 8.581578 GTTTGTTTCCAGGGACTTATTGATTTA 58.418 33.333 0.00 0.00 34.60 1.40
77 78 7.938140 TGTTTCCAGGGACTTATTGATTTAG 57.062 36.000 0.00 0.00 34.60 1.85
78 79 6.889722 TGTTTCCAGGGACTTATTGATTTAGG 59.110 38.462 0.00 0.00 34.60 2.69
79 80 5.646692 TCCAGGGACTTATTGATTTAGGG 57.353 43.478 0.00 0.00 34.60 3.53
80 81 5.293643 TCCAGGGACTTATTGATTTAGGGA 58.706 41.667 0.00 0.00 34.60 4.20
81 82 5.132144 TCCAGGGACTTATTGATTTAGGGAC 59.868 44.000 0.00 0.00 34.60 4.46
82 83 5.132816 CCAGGGACTTATTGATTTAGGGACT 59.867 44.000 0.00 0.00 39.39 3.85
83 84 6.353951 CCAGGGACTTATTGATTTAGGGACTT 60.354 42.308 0.00 0.00 36.39 3.01
84 85 7.147373 CCAGGGACTTATTGATTTAGGGACTTA 60.147 40.741 0.00 0.00 36.39 2.24
85 86 8.272173 CAGGGACTTATTGATTTAGGGACTTAA 58.728 37.037 0.00 0.00 36.39 1.85
86 87 8.842764 AGGGACTTATTGATTTAGGGACTTAAA 58.157 33.333 0.00 0.00 34.75 1.52
87 88 9.470399 GGGACTTATTGATTTAGGGACTTAAAA 57.530 33.333 0.00 0.00 41.75 1.52
113 114 7.842887 AGTCTCTATAAGTCCCATCTAAACC 57.157 40.000 0.00 0.00 0.00 3.27
114 115 7.363031 AGTCTCTATAAGTCCCATCTAAACCA 58.637 38.462 0.00 0.00 0.00 3.67
115 116 7.844779 AGTCTCTATAAGTCCCATCTAAACCAA 59.155 37.037 0.00 0.00 0.00 3.67
116 117 8.483758 GTCTCTATAAGTCCCATCTAAACCAAA 58.516 37.037 0.00 0.00 0.00 3.28
117 118 8.483758 TCTCTATAAGTCCCATCTAAACCAAAC 58.516 37.037 0.00 0.00 0.00 2.93
118 119 8.153221 TCTATAAGTCCCATCTAAACCAAACA 57.847 34.615 0.00 0.00 0.00 2.83
119 120 8.265055 TCTATAAGTCCCATCTAAACCAAACAG 58.735 37.037 0.00 0.00 0.00 3.16
120 121 4.034285 AGTCCCATCTAAACCAAACAGG 57.966 45.455 0.00 0.00 45.67 4.00
121 122 3.655777 AGTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
122 123 4.010349 GTCCCATCTAAACCAAACAGGAG 58.990 47.826 0.00 0.00 41.22 3.69
123 124 3.010138 TCCCATCTAAACCAAACAGGAGG 59.990 47.826 0.00 0.00 41.22 4.30
124 125 3.356290 CCATCTAAACCAAACAGGAGGG 58.644 50.000 0.00 0.00 41.22 4.30
125 126 3.010138 CCATCTAAACCAAACAGGAGGGA 59.990 47.826 0.00 0.00 41.22 4.20
126 127 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
128 129 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
129 130 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
130 131 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
131 132 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
132 133 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
133 134 3.780850 ACCAAACAGGAGGGACTTATAGG 59.219 47.826 0.00 0.00 41.55 2.57
134 135 3.136626 CCAAACAGGAGGGACTTATAGGG 59.863 52.174 0.00 0.00 41.55 3.53
135 136 4.037927 CAAACAGGAGGGACTTATAGGGA 58.962 47.826 0.00 0.00 41.55 4.20
136 137 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
137 138 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
138 139 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
139 140 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
140 141 5.042827 ACAGGAGGGACTTATAGGGACTTAA 60.043 44.000 0.00 0.00 41.55 1.85
141 142 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
142 143 6.042208 CAGGAGGGACTTATAGGGACTTAAAG 59.958 46.154 0.00 0.00 41.55 1.85
143 144 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
144 145 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
145 146 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
146 147 5.163227 GGGACTTATAGGGACTTAAAGTGGG 60.163 48.000 0.00 0.00 40.60 4.61
147 148 5.366460 GACTTATAGGGACTTAAAGTGGGC 58.634 45.833 0.00 0.00 40.60 5.36
148 149 4.786454 ACTTATAGGGACTTAAAGTGGGCA 59.214 41.667 0.00 0.00 39.58 5.36
149 150 5.432060 ACTTATAGGGACTTAAAGTGGGCAT 59.568 40.000 0.00 0.00 39.58 4.40
150 151 4.881157 ATAGGGACTTAAAGTGGGCATT 57.119 40.909 0.00 0.00 41.75 3.56
151 152 3.542969 AGGGACTTAAAGTGGGCATTT 57.457 42.857 0.00 0.00 27.25 2.32
152 153 3.165071 AGGGACTTAAAGTGGGCATTTG 58.835 45.455 0.00 0.00 27.25 2.32
153 154 2.233676 GGGACTTAAAGTGGGCATTTGG 59.766 50.000 0.00 0.00 0.00 3.28
154 155 2.233676 GGACTTAAAGTGGGCATTTGGG 59.766 50.000 0.00 0.00 0.00 4.12
155 156 3.161866 GACTTAAAGTGGGCATTTGGGA 58.838 45.455 0.00 0.00 0.00 4.37
156 157 2.897326 ACTTAAAGTGGGCATTTGGGAC 59.103 45.455 0.00 0.00 0.00 4.46
157 158 2.990740 TAAAGTGGGCATTTGGGACT 57.009 45.000 0.00 0.00 0.00 3.85
158 159 2.101640 AAAGTGGGCATTTGGGACTT 57.898 45.000 0.00 0.00 0.00 3.01
159 160 2.990740 AAGTGGGCATTTGGGACTTA 57.009 45.000 0.00 0.00 0.00 2.24
160 161 3.473113 AAGTGGGCATTTGGGACTTAT 57.527 42.857 0.00 0.00 0.00 1.73
161 162 2.738743 AGTGGGCATTTGGGACTTATG 58.261 47.619 0.00 0.00 0.00 1.90
162 163 2.311542 AGTGGGCATTTGGGACTTATGA 59.688 45.455 0.00 0.00 0.00 2.15
163 164 3.096092 GTGGGCATTTGGGACTTATGAA 58.904 45.455 0.00 0.00 0.00 2.57
164 165 3.513515 GTGGGCATTTGGGACTTATGAAA 59.486 43.478 0.00 0.00 0.00 2.69
165 166 4.162131 GTGGGCATTTGGGACTTATGAAAT 59.838 41.667 0.00 0.00 0.00 2.17
166 167 5.362430 GTGGGCATTTGGGACTTATGAAATA 59.638 40.000 0.00 0.00 0.00 1.40
167 168 5.960811 TGGGCATTTGGGACTTATGAAATAA 59.039 36.000 0.00 0.00 36.20 1.40
183 184 6.935240 TGAAATAAGACTCTCAAGAAGGGA 57.065 37.500 0.00 0.00 0.00 4.20
184 185 6.702329 TGAAATAAGACTCTCAAGAAGGGAC 58.298 40.000 0.00 0.00 0.00 4.46
202 203 5.851418 AGGGACTTATAGGGACTTAGTTGT 58.149 41.667 0.00 0.00 34.75 3.32
203 204 6.989894 AGGGACTTATAGGGACTTAGTTGTA 58.010 40.000 0.00 0.00 34.75 2.41
204 205 7.425003 AGGGACTTATAGGGACTTAGTTGTAA 58.575 38.462 0.00 0.00 34.75 2.41
205 206 8.072480 AGGGACTTATAGGGACTTAGTTGTAAT 58.928 37.037 0.00 0.00 34.75 1.89
206 207 9.372189 GGGACTTATAGGGACTTAGTTGTAATA 57.628 37.037 0.00 0.00 41.75 0.98
213 214 7.750947 AGGGACTTAGTTGTAATATGGTCTT 57.249 36.000 0.00 0.00 27.25 3.01
214 215 8.159229 AGGGACTTAGTTGTAATATGGTCTTT 57.841 34.615 0.00 0.00 27.25 2.52
215 216 8.612145 AGGGACTTAGTTGTAATATGGTCTTTT 58.388 33.333 0.00 0.00 27.25 2.27
216 217 9.895138 GGGACTTAGTTGTAATATGGTCTTTTA 57.105 33.333 0.00 0.00 0.00 1.52
223 224 9.396022 AGTTGTAATATGGTCTTTTAGTCCATG 57.604 33.333 13.41 0.00 42.62 3.66
224 225 9.174166 GTTGTAATATGGTCTTTTAGTCCATGT 57.826 33.333 13.41 6.18 42.62 3.21
225 226 9.747898 TTGTAATATGGTCTTTTAGTCCATGTT 57.252 29.630 15.13 15.13 42.62 2.71
229 230 9.975218 AATATGGTCTTTTAGTCCATGTTAAGT 57.025 29.630 13.41 0.00 42.62 2.24
230 231 7.923414 ATGGTCTTTTAGTCCATGTTAAGTC 57.077 36.000 4.95 0.00 41.46 3.01
231 232 6.235664 TGGTCTTTTAGTCCATGTTAAGTCC 58.764 40.000 0.00 0.00 28.55 3.85
232 233 5.646793 GGTCTTTTAGTCCATGTTAAGTCCC 59.353 44.000 0.00 0.00 0.00 4.46
233 234 6.235664 GTCTTTTAGTCCATGTTAAGTCCCA 58.764 40.000 0.00 0.00 0.00 4.37
234 235 6.371825 GTCTTTTAGTCCATGTTAAGTCCCAG 59.628 42.308 0.00 0.00 0.00 4.45
235 236 4.837093 TTAGTCCATGTTAAGTCCCAGG 57.163 45.455 0.00 0.00 0.00 4.45
236 237 2.915869 AGTCCATGTTAAGTCCCAGGA 58.084 47.619 0.00 0.00 0.00 3.86
237 238 3.256704 AGTCCATGTTAAGTCCCAGGAA 58.743 45.455 0.00 0.00 0.00 3.36
238 239 3.852578 AGTCCATGTTAAGTCCCAGGAAT 59.147 43.478 0.00 0.00 0.00 3.01
239 240 4.080299 AGTCCATGTTAAGTCCCAGGAATC 60.080 45.833 0.00 0.00 0.00 2.52
240 241 3.849574 TCCATGTTAAGTCCCAGGAATCA 59.150 43.478 0.00 0.00 0.00 2.57
241 242 4.290985 TCCATGTTAAGTCCCAGGAATCAA 59.709 41.667 0.00 0.00 0.00 2.57
242 243 5.016173 CCATGTTAAGTCCCAGGAATCAAA 58.984 41.667 0.00 0.00 0.00 2.69
243 244 5.105756 CCATGTTAAGTCCCAGGAATCAAAC 60.106 44.000 0.00 5.74 0.00 2.93
244 245 5.055265 TGTTAAGTCCCAGGAATCAAACA 57.945 39.130 9.61 9.61 30.93 2.83
245 246 5.070001 TGTTAAGTCCCAGGAATCAAACAG 58.930 41.667 9.61 0.00 30.39 3.16
246 247 2.887151 AGTCCCAGGAATCAAACAGG 57.113 50.000 0.00 0.00 0.00 4.00
247 248 2.065799 AGTCCCAGGAATCAAACAGGT 58.934 47.619 0.00 0.00 0.00 4.00
248 249 3.256704 AGTCCCAGGAATCAAACAGGTA 58.743 45.455 0.00 0.00 0.00 3.08
249 250 3.264450 AGTCCCAGGAATCAAACAGGTAG 59.736 47.826 0.00 0.00 0.00 3.18
250 251 3.263425 GTCCCAGGAATCAAACAGGTAGA 59.737 47.826 0.00 0.00 0.00 2.59
251 252 3.519510 TCCCAGGAATCAAACAGGTAGAG 59.480 47.826 0.00 0.00 0.00 2.43
252 253 3.519510 CCCAGGAATCAAACAGGTAGAGA 59.480 47.826 0.00 0.00 0.00 3.10
253 254 4.508662 CCAGGAATCAAACAGGTAGAGAC 58.491 47.826 0.00 0.00 0.00 3.36
254 255 4.223923 CCAGGAATCAAACAGGTAGAGACT 59.776 45.833 0.00 0.00 0.00 3.24
255 256 5.280215 CCAGGAATCAAACAGGTAGAGACTT 60.280 44.000 0.00 0.00 0.00 3.01
256 257 6.234177 CAGGAATCAAACAGGTAGAGACTTT 58.766 40.000 0.00 0.00 0.00 2.66
257 258 6.712547 CAGGAATCAAACAGGTAGAGACTTTT 59.287 38.462 0.00 0.00 0.00 2.27
258 259 7.229506 CAGGAATCAAACAGGTAGAGACTTTTT 59.770 37.037 0.00 0.00 0.00 1.94
259 260 8.437575 AGGAATCAAACAGGTAGAGACTTTTTA 58.562 33.333 0.00 0.00 0.00 1.52
260 261 8.722394 GGAATCAAACAGGTAGAGACTTTTTAG 58.278 37.037 0.00 0.00 0.00 1.85
261 262 8.622948 AATCAAACAGGTAGAGACTTTTTAGG 57.377 34.615 0.00 0.00 0.00 2.69
262 263 6.531021 TCAAACAGGTAGAGACTTTTTAGGG 58.469 40.000 0.00 0.00 0.00 3.53
263 264 6.328148 TCAAACAGGTAGAGACTTTTTAGGGA 59.672 38.462 0.00 0.00 0.00 4.20
264 265 5.741962 ACAGGTAGAGACTTTTTAGGGAC 57.258 43.478 0.00 0.00 0.00 4.46
265 266 5.404395 ACAGGTAGAGACTTTTTAGGGACT 58.596 41.667 0.00 0.00 46.37 3.85
266 267 5.845065 ACAGGTAGAGACTTTTTAGGGACTT 59.155 40.000 0.00 0.00 41.75 3.01
267 268 6.166982 CAGGTAGAGACTTTTTAGGGACTTG 58.833 44.000 0.00 0.00 41.75 3.16
268 269 5.248705 AGGTAGAGACTTTTTAGGGACTTGG 59.751 44.000 0.00 0.00 41.75 3.61
269 270 5.247792 GGTAGAGACTTTTTAGGGACTTGGA 59.752 44.000 0.00 0.00 41.75 3.53
270 271 5.906772 AGAGACTTTTTAGGGACTTGGAA 57.093 39.130 0.00 0.00 41.75 3.53
271 272 5.622180 AGAGACTTTTTAGGGACTTGGAAC 58.378 41.667 0.00 0.00 41.75 3.62
272 273 5.369993 AGAGACTTTTTAGGGACTTGGAACT 59.630 40.000 0.00 0.00 41.75 3.01
273 274 6.014771 AGACTTTTTAGGGACTTGGAACTT 57.985 37.500 0.00 0.00 41.75 2.66
274 275 7.072076 AGAGACTTTTTAGGGACTTGGAACTTA 59.928 37.037 0.00 0.00 41.75 2.24
275 276 7.756614 AGACTTTTTAGGGACTTGGAACTTAT 58.243 34.615 0.00 0.00 41.75 1.73
276 277 8.887393 AGACTTTTTAGGGACTTGGAACTTATA 58.113 33.333 0.00 0.00 41.75 0.98
277 278 9.511272 GACTTTTTAGGGACTTGGAACTTATAA 57.489 33.333 0.00 0.00 41.75 0.98
278 279 9.516546 ACTTTTTAGGGACTTGGAACTTATAAG 57.483 33.333 11.05 11.05 41.75 1.73
279 280 9.516546 CTTTTTAGGGACTTGGAACTTATAAGT 57.483 33.333 12.50 12.50 41.75 2.24
280 281 9.871175 TTTTTAGGGACTTGGAACTTATAAGTT 57.129 29.630 27.01 27.01 46.10 2.66
281 282 8.857694 TTTAGGGACTTGGAACTTATAAGTTG 57.142 34.615 30.66 19.76 44.52 3.16
282 283 5.816682 AGGGACTTGGAACTTATAAGTTGG 58.183 41.667 30.66 19.78 43.13 3.77
283 284 5.281037 AGGGACTTGGAACTTATAAGTTGGG 60.281 44.000 30.66 19.50 43.13 4.12
284 285 7.444901 AGGGACTTGGAACTTATAAGTTGGGA 61.445 42.308 30.66 16.34 43.13 4.37
285 286 9.383354 AGGGACTTGGAACTTATAAGTTGGGAC 62.383 44.444 30.66 17.82 43.13 4.46
317 318 8.528044 AAGTCCTAAAACTTATGAACCAAACA 57.472 30.769 0.00 0.00 37.71 2.83
318 319 8.166422 AGTCCTAAAACTTATGAACCAAACAG 57.834 34.615 0.00 0.00 0.00 3.16
319 320 7.230712 AGTCCTAAAACTTATGAACCAAACAGG 59.769 37.037 0.00 0.00 45.67 4.00
320 321 6.492087 TCCTAAAACTTATGAACCAAACAGGG 59.508 38.462 0.00 0.00 43.89 4.45
321 322 4.600692 AAACTTATGAACCAAACAGGGC 57.399 40.909 0.00 0.00 43.89 5.19
322 323 2.525368 ACTTATGAACCAAACAGGGCC 58.475 47.619 0.00 0.00 43.89 5.80
323 324 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
340 341 4.402474 AGGGCCTAATGCATTGTTTAAGAC 59.598 41.667 22.27 3.09 43.89 3.01
350 351 7.503521 TGCATTGTTTAAGACTGTACAATCA 57.496 32.000 7.13 3.54 38.71 2.57
386 387 1.045407 TGATATAGCACGGACACCCC 58.955 55.000 0.00 0.00 0.00 4.95
391 392 3.948719 GCACGGACACCCCAAGGA 61.949 66.667 0.00 0.00 36.73 3.36
399 400 2.490902 GGACACCCCAAGGAATCAAGTT 60.491 50.000 0.00 0.00 36.73 2.66
424 425 9.538508 TTTTACTAACTAACAAGAGACTGAACC 57.461 33.333 0.00 0.00 0.00 3.62
463 464 5.930135 ACCAAAACAGAGGCTATATACTGG 58.070 41.667 5.31 3.45 35.08 4.00
464 465 5.665812 ACCAAAACAGAGGCTATATACTGGA 59.334 40.000 8.58 0.00 35.08 3.86
465 466 6.157994 ACCAAAACAGAGGCTATATACTGGAA 59.842 38.462 8.58 0.00 35.08 3.53
467 468 6.808321 AAACAGAGGCTATATACTGGAACA 57.192 37.500 5.31 0.00 35.08 3.18
469 470 8.492415 AAACAGAGGCTATATACTGGAACATA 57.508 34.615 5.31 0.00 38.20 2.29
470 471 8.671987 AACAGAGGCTATATACTGGAACATAT 57.328 34.615 5.31 0.00 38.20 1.78
471 472 8.299990 ACAGAGGCTATATACTGGAACATATC 57.700 38.462 5.31 0.00 38.20 1.63
480 481 2.702847 GGAACATATCCGGTGCACC 58.297 57.895 26.78 26.78 38.79 5.01
481 482 0.818040 GGAACATATCCGGTGCACCC 60.818 60.000 29.95 12.16 38.79 4.61
482 483 0.107410 GAACATATCCGGTGCACCCA 60.107 55.000 29.95 17.32 0.00 4.51
483 484 0.393808 AACATATCCGGTGCACCCAC 60.394 55.000 29.95 5.86 41.32 4.61
484 485 1.223211 CATATCCGGTGCACCCACA 59.777 57.895 29.95 14.22 43.88 4.17
485 486 1.095228 CATATCCGGTGCACCCACAC 61.095 60.000 29.95 5.05 43.88 3.82
486 487 1.271840 ATATCCGGTGCACCCACACT 61.272 55.000 29.95 12.63 43.88 3.55
487 488 1.485294 TATCCGGTGCACCCACACTT 61.485 55.000 29.95 11.40 43.88 3.16
488 489 3.286751 CCGGTGCACCCACACTTG 61.287 66.667 29.95 13.72 43.88 3.16
489 490 2.515991 CGGTGCACCCACACTTGT 60.516 61.111 29.95 0.00 43.88 3.16
490 491 2.833533 CGGTGCACCCACACTTGTG 61.834 63.158 29.95 8.78 43.88 3.33
501 502 3.706055 CACTTGTGGTGCTACAGGT 57.294 52.632 0.00 0.00 40.93 4.00
502 503 3.706055 ACTTGTGGTGCTACAGGTG 57.294 52.632 2.95 0.00 39.12 4.00
503 504 0.535102 ACTTGTGGTGCTACAGGTGC 60.535 55.000 2.95 0.00 39.12 5.01
504 505 0.534877 CTTGTGGTGCTACAGGTGCA 60.535 55.000 0.00 0.00 38.19 4.57
509 510 2.920384 TGCTACAGGTGCACCGGA 60.920 61.111 37.84 24.32 42.08 5.14
510 511 2.290287 TGCTACAGGTGCACCGGAT 61.290 57.895 37.84 25.08 42.08 4.18
511 512 1.815421 GCTACAGGTGCACCGGATG 60.815 63.158 37.84 28.29 42.08 3.51
570 571 7.065216 TCTAGCAATTCTGAAATGAAAGTCG 57.935 36.000 9.56 0.00 0.00 4.18
604 605 1.203013 AGGTAAGTGCCAAAGGTTCCC 60.203 52.381 0.00 0.00 0.00 3.97
606 607 0.250989 TAAGTGCCAAAGGTTCCCGG 60.251 55.000 0.00 0.00 0.00 5.73
613 620 1.235724 CAAAGGTTCCCGGTTCAGTC 58.764 55.000 0.00 0.00 0.00 3.51
634 641 6.813152 CAGTCTTGTCCAACAAACAAAAAGAT 59.187 34.615 0.00 0.00 37.69 2.40
687 694 8.762481 TTAGTATAACTAGGCAGAGATGTTGA 57.238 34.615 0.00 0.00 31.47 3.18
688 695 7.661536 AGTATAACTAGGCAGAGATGTTGAA 57.338 36.000 0.00 0.00 0.00 2.69
689 696 8.256356 AGTATAACTAGGCAGAGATGTTGAAT 57.744 34.615 0.00 0.00 0.00 2.57
690 697 8.147058 AGTATAACTAGGCAGAGATGTTGAATG 58.853 37.037 0.00 0.00 0.00 2.67
691 698 5.426689 AACTAGGCAGAGATGTTGAATGA 57.573 39.130 0.00 0.00 0.00 2.57
692 699 4.764172 ACTAGGCAGAGATGTTGAATGAC 58.236 43.478 0.00 0.00 0.00 3.06
693 700 3.996921 AGGCAGAGATGTTGAATGACT 57.003 42.857 0.00 0.00 0.00 3.41
694 701 4.298103 AGGCAGAGATGTTGAATGACTT 57.702 40.909 0.00 0.00 0.00 3.01
695 702 5.426689 AGGCAGAGATGTTGAATGACTTA 57.573 39.130 0.00 0.00 0.00 2.24
696 703 5.426504 AGGCAGAGATGTTGAATGACTTAG 58.573 41.667 0.00 0.00 0.00 2.18
697 704 5.188555 AGGCAGAGATGTTGAATGACTTAGA 59.811 40.000 0.00 0.00 0.00 2.10
698 705 5.877012 GGCAGAGATGTTGAATGACTTAGAA 59.123 40.000 0.00 0.00 0.00 2.10
699 706 6.372659 GGCAGAGATGTTGAATGACTTAGAAA 59.627 38.462 0.00 0.00 0.00 2.52
700 707 7.066766 GGCAGAGATGTTGAATGACTTAGAAAT 59.933 37.037 0.00 0.00 0.00 2.17
701 708 9.102757 GCAGAGATGTTGAATGACTTAGAAATA 57.897 33.333 0.00 0.00 0.00 1.40
703 710 9.606631 AGAGATGTTGAATGACTTAGAAATACC 57.393 33.333 0.00 0.00 0.00 2.73
704 711 9.606631 GAGATGTTGAATGACTTAGAAATACCT 57.393 33.333 0.00 0.00 0.00 3.08
705 712 9.965902 AGATGTTGAATGACTTAGAAATACCTT 57.034 29.630 0.00 0.00 0.00 3.50
707 714 9.739276 ATGTTGAATGACTTAGAAATACCTTCA 57.261 29.630 0.00 0.00 36.40 3.02
708 715 9.219603 TGTTGAATGACTTAGAAATACCTTCAG 57.780 33.333 0.00 0.00 36.40 3.02
709 716 9.220767 GTTGAATGACTTAGAAATACCTTCAGT 57.779 33.333 0.00 0.00 36.40 3.41
710 717 9.793259 TTGAATGACTTAGAAATACCTTCAGTT 57.207 29.630 0.00 0.00 36.40 3.16
711 718 9.793259 TGAATGACTTAGAAATACCTTCAGTTT 57.207 29.630 0.00 0.00 36.40 2.66
802 818 4.511826 AGTTGAAAGCGAACTAACCTTCAG 59.488 41.667 0.00 0.00 31.72 3.02
813 829 7.683704 GCGAACTAACCTTCAGTAGAATATGGA 60.684 40.741 0.00 0.00 32.31 3.41
815 831 7.973048 ACTAACCTTCAGTAGAATATGGACA 57.027 36.000 0.00 0.00 32.31 4.02
816 832 7.783042 ACTAACCTTCAGTAGAATATGGACAC 58.217 38.462 0.00 0.00 32.31 3.67
824 840 8.322906 TCAGTAGAATATGGACACAAACAAAG 57.677 34.615 0.00 0.00 0.00 2.77
845 861 2.511600 GACGATGCAACTCGGGGG 60.512 66.667 13.80 0.00 42.88 5.40
847 863 2.311688 GACGATGCAACTCGGGGGAT 62.312 60.000 13.80 0.00 42.88 3.85
848 864 1.046472 ACGATGCAACTCGGGGGATA 61.046 55.000 13.80 0.00 42.88 2.59
849 865 0.105964 CGATGCAACTCGGGGGATAA 59.894 55.000 1.69 0.00 35.03 1.75
862 878 4.722781 TCGGGGGATAATTTCTAAGGACAA 59.277 41.667 0.00 0.00 0.00 3.18
993 1009 2.166459 TCCTTCGAGTTACTGCATCTGG 59.834 50.000 0.00 0.00 0.00 3.86
1160 1176 4.920640 ATCTATCGTCGATCCAAACAGT 57.079 40.909 11.82 0.00 0.00 3.55
1233 1249 3.567585 GGCTAAGGAGAATCAAAGATGCC 59.432 47.826 0.00 0.00 36.25 4.40
1291 1307 2.613026 TCGAGTTCTCCAAGCACAAA 57.387 45.000 0.00 0.00 0.00 2.83
1395 1417 3.622630 CTCTACCACCACTAGCAGTAGT 58.377 50.000 0.00 0.00 40.38 2.73
1400 1422 2.496070 CCACCACTAGCAGTAGTAGCAA 59.504 50.000 0.00 0.00 37.40 3.91
1527 1549 5.319453 AGTGAGATGCAAAGATTTCTGGAA 58.681 37.500 0.00 0.00 0.00 3.53
1551 1573 2.762887 TGTGAAGATAGAGGACAGCAGG 59.237 50.000 0.00 0.00 0.00 4.85
1635 1657 7.323049 TGGTCGAGTTAATGAAGAAAACAAA 57.677 32.000 0.00 0.00 0.00 2.83
1677 1699 4.822350 CAGATCAATGAGCAATCCAGTCAT 59.178 41.667 0.07 0.00 32.13 3.06
1726 1748 3.367646 TTGGTGGTGTTGGTAAGACAA 57.632 42.857 0.00 0.00 0.00 3.18
1747 1769 6.609533 ACAACGTTAGTACAGAGAGTGTATG 58.390 40.000 0.00 0.00 43.70 2.39
1752 1774 6.128090 CGTTAGTACAGAGAGTGTATGACCAA 60.128 42.308 0.00 0.00 43.70 3.67
1755 1777 6.634805 AGTACAGAGAGTGTATGACCAATTG 58.365 40.000 0.00 0.00 43.70 2.32
1765 1787 3.861276 ATGACCAATTGCATGACACAG 57.139 42.857 0.00 0.00 0.00 3.66
2040 2086 6.371809 ACTCGAAGTAAAAATGTTGCAAGA 57.628 33.333 0.00 0.00 0.00 3.02
2056 2102 6.985059 TGTTGCAAGAATGAATGAATCAACAA 59.015 30.769 0.00 0.00 42.54 2.83
2079 2125 3.630769 AGATCATGCACTTACATGGCTTG 59.369 43.478 0.00 0.00 46.08 4.01
2098 2144 4.503296 GCTTGGAAGACAAAGACTACTGGA 60.503 45.833 0.00 0.00 38.91 3.86
2129 2175 2.162008 CACAATGTGCATTCGGTGATGA 59.838 45.455 0.00 0.00 30.64 2.92
2278 2324 5.179533 GGAGTTCTATCTGTGGAAGGAAAC 58.820 45.833 0.00 0.00 0.00 2.78
2619 2665 7.406031 ACACTTCCGAATAGAAGATGACTTA 57.594 36.000 8.21 0.00 45.08 2.24
2700 2770 4.642429 AGGTGTACATGAGTTTGGAAGAC 58.358 43.478 0.00 0.00 0.00 3.01
2978 3066 1.212935 ACAAGGGTTGAGTCTGCAAGT 59.787 47.619 0.00 0.00 33.76 3.16
3054 3148 6.352737 CCCAGTTAAGATACTTAAAGGCTCCA 60.353 42.308 13.60 0.00 0.00 3.86
3055 3149 6.763610 CCAGTTAAGATACTTAAAGGCTCCAG 59.236 42.308 5.68 0.00 0.00 3.86
3307 5987 6.838401 AACTTGAATCTCTTCCCCAGATAT 57.162 37.500 0.00 0.00 29.97 1.63
3711 6412 5.728741 AGTTCCTTTTCTGGAGGATAGATGT 59.271 40.000 0.00 0.00 42.63 3.06
3712 6413 5.620738 TCCTTTTCTGGAGGATAGATGTG 57.379 43.478 0.00 0.00 38.37 3.21
3719 6420 3.321039 TGGAGGATAGATGTGGCTGAAT 58.679 45.455 0.00 0.00 0.00 2.57
3766 6473 2.500910 CAGCTCTCTTCTCCCTTGTGAT 59.499 50.000 0.00 0.00 0.00 3.06
3793 6500 6.308766 ACAAGAATCAAGAATACGCAAATTGC 59.691 34.615 8.09 8.09 40.69 3.56
3820 6527 6.654161 CAGGAGGCTCTAAATAATGAATGGAG 59.346 42.308 15.23 0.00 0.00 3.86
3823 6530 7.141758 AGGCTCTAAATAATGAATGGAGTGA 57.858 36.000 0.00 0.00 0.00 3.41
3826 6533 7.094463 GGCTCTAAATAATGAATGGAGTGATGG 60.094 40.741 0.00 0.00 0.00 3.51
3836 6543 1.256812 GGAGTGATGGTGTTTTGGGG 58.743 55.000 0.00 0.00 0.00 4.96
3942 6666 2.762535 AGTTCGTGTGGAGGGTATTG 57.237 50.000 0.00 0.00 0.00 1.90
4078 6803 1.203237 TCAGGGGATCGCAATTCTGA 58.797 50.000 12.32 11.50 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.037565 CCCATATGACTCAGCTACGTGTAA 59.962 45.833 3.65 0.00 0.00 2.41
1 2 3.568430 CCCATATGACTCAGCTACGTGTA 59.432 47.826 3.65 0.00 0.00 2.90
2 3 2.362397 CCCATATGACTCAGCTACGTGT 59.638 50.000 3.65 0.00 0.00 4.49
3 4 2.623416 TCCCATATGACTCAGCTACGTG 59.377 50.000 3.65 0.00 0.00 4.49
4 5 2.945456 TCCCATATGACTCAGCTACGT 58.055 47.619 3.65 0.00 0.00 3.57
37 38 6.195600 TGGAAACAAACACCCTCTTAGTAT 57.804 37.500 0.00 0.00 37.44 2.12
38 39 5.455612 CCTGGAAACAAACACCCTCTTAGTA 60.456 44.000 0.00 0.00 42.06 1.82
41 42 3.435890 CCCTGGAAACAAACACCCTCTTA 60.436 47.826 0.00 0.00 42.06 2.10
42 43 2.666317 CCTGGAAACAAACACCCTCTT 58.334 47.619 0.00 0.00 42.06 2.85
43 44 1.133482 CCCTGGAAACAAACACCCTCT 60.133 52.381 0.00 0.00 42.06 3.69
44 45 1.133606 TCCCTGGAAACAAACACCCTC 60.134 52.381 0.00 0.00 42.06 4.30
45 46 0.930726 TCCCTGGAAACAAACACCCT 59.069 50.000 0.00 0.00 42.06 4.34
46 47 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
47 48 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
48 49 5.300792 TCAATAAGTCCCTGGAAACAAACAC 59.699 40.000 0.00 0.00 42.06 3.32
49 50 5.450453 TCAATAAGTCCCTGGAAACAAACA 58.550 37.500 0.00 0.00 42.06 2.83
50 51 6.590234 ATCAATAAGTCCCTGGAAACAAAC 57.410 37.500 0.00 0.00 42.06 2.93
51 52 7.610580 AAATCAATAAGTCCCTGGAAACAAA 57.389 32.000 0.00 0.00 42.06 2.83
52 53 7.396055 CCTAAATCAATAAGTCCCTGGAAACAA 59.604 37.037 0.00 0.00 42.06 2.83
53 54 6.889722 CCTAAATCAATAAGTCCCTGGAAACA 59.110 38.462 0.00 0.00 39.59 2.83
54 55 6.321435 CCCTAAATCAATAAGTCCCTGGAAAC 59.679 42.308 0.00 0.00 0.00 2.78
55 56 6.218730 TCCCTAAATCAATAAGTCCCTGGAAA 59.781 38.462 0.00 0.00 0.00 3.13
56 57 5.734140 TCCCTAAATCAATAAGTCCCTGGAA 59.266 40.000 0.00 0.00 0.00 3.53
57 58 5.132144 GTCCCTAAATCAATAAGTCCCTGGA 59.868 44.000 0.00 0.00 0.00 3.86
58 59 5.132816 AGTCCCTAAATCAATAAGTCCCTGG 59.867 44.000 0.00 0.00 0.00 4.45
59 60 6.253946 AGTCCCTAAATCAATAAGTCCCTG 57.746 41.667 0.00 0.00 0.00 4.45
60 61 6.910259 AAGTCCCTAAATCAATAAGTCCCT 57.090 37.500 0.00 0.00 0.00 4.20
61 62 9.470399 TTTTAAGTCCCTAAATCAATAAGTCCC 57.530 33.333 0.00 0.00 0.00 4.46
87 88 8.706521 GGTTTAGATGGGACTTATAGAGACTTT 58.293 37.037 0.00 0.00 0.00 2.66
88 89 7.844779 TGGTTTAGATGGGACTTATAGAGACTT 59.155 37.037 0.00 0.00 0.00 3.01
89 90 7.363031 TGGTTTAGATGGGACTTATAGAGACT 58.637 38.462 0.00 0.00 0.00 3.24
90 91 7.598759 TGGTTTAGATGGGACTTATAGAGAC 57.401 40.000 0.00 0.00 0.00 3.36
91 92 8.483758 GTTTGGTTTAGATGGGACTTATAGAGA 58.516 37.037 0.00 0.00 0.00 3.10
92 93 8.265055 TGTTTGGTTTAGATGGGACTTATAGAG 58.735 37.037 0.00 0.00 0.00 2.43
93 94 8.153221 TGTTTGGTTTAGATGGGACTTATAGA 57.847 34.615 0.00 0.00 0.00 1.98
94 95 7.499232 CCTGTTTGGTTTAGATGGGACTTATAG 59.501 40.741 0.00 0.00 0.00 1.31
95 96 7.183112 TCCTGTTTGGTTTAGATGGGACTTATA 59.817 37.037 0.00 0.00 37.07 0.98
96 97 6.011981 TCCTGTTTGGTTTAGATGGGACTTAT 60.012 38.462 0.00 0.00 37.07 1.73
97 98 5.311121 TCCTGTTTGGTTTAGATGGGACTTA 59.689 40.000 0.00 0.00 37.07 2.24
98 99 4.105697 TCCTGTTTGGTTTAGATGGGACTT 59.894 41.667 0.00 0.00 37.07 3.01
99 100 3.655777 TCCTGTTTGGTTTAGATGGGACT 59.344 43.478 0.00 0.00 37.07 3.85
100 101 4.010349 CTCCTGTTTGGTTTAGATGGGAC 58.990 47.826 0.00 0.00 37.07 4.46
101 102 3.010138 CCTCCTGTTTGGTTTAGATGGGA 59.990 47.826 0.00 0.00 37.07 4.37
102 103 3.356290 CCTCCTGTTTGGTTTAGATGGG 58.644 50.000 0.00 0.00 37.07 4.00
103 104 3.010138 TCCCTCCTGTTTGGTTTAGATGG 59.990 47.826 0.00 0.00 37.07 3.51
104 105 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
105 106 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
106 107 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
107 108 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
108 109 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
109 110 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
110 111 4.227527 CCTATAAGTCCCTCCTGTTTGGTT 59.772 45.833 0.00 0.00 37.07 3.67
111 112 3.780850 CCTATAAGTCCCTCCTGTTTGGT 59.219 47.826 0.00 0.00 37.07 3.67
112 113 3.136626 CCCTATAAGTCCCTCCTGTTTGG 59.863 52.174 0.00 0.00 37.10 3.28
113 114 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
114 115 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
115 116 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
116 117 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
117 118 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
118 119 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
119 120 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
120 121 6.183360 CCACTTTAAGTCCCTATAAGTCCCTC 60.183 46.154 0.00 0.00 0.00 4.30
121 122 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
122 123 5.163227 CCCACTTTAAGTCCCTATAAGTCCC 60.163 48.000 0.00 0.00 0.00 4.46
123 124 5.686913 GCCCACTTTAAGTCCCTATAAGTCC 60.687 48.000 0.00 0.00 0.00 3.85
124 125 5.104652 TGCCCACTTTAAGTCCCTATAAGTC 60.105 44.000 0.00 0.00 0.00 3.01
125 126 4.786454 TGCCCACTTTAAGTCCCTATAAGT 59.214 41.667 0.00 0.00 0.00 2.24
126 127 5.367945 TGCCCACTTTAAGTCCCTATAAG 57.632 43.478 0.00 0.00 0.00 1.73
127 128 5.987019 ATGCCCACTTTAAGTCCCTATAA 57.013 39.130 0.00 0.00 0.00 0.98
128 129 5.987019 AATGCCCACTTTAAGTCCCTATA 57.013 39.130 0.00 0.00 0.00 1.31
129 130 4.881157 AATGCCCACTTTAAGTCCCTAT 57.119 40.909 0.00 0.00 0.00 2.57
130 131 4.340617 CAAATGCCCACTTTAAGTCCCTA 58.659 43.478 0.00 0.00 0.00 3.53
131 132 3.165071 CAAATGCCCACTTTAAGTCCCT 58.835 45.455 0.00 0.00 0.00 4.20
132 133 2.233676 CCAAATGCCCACTTTAAGTCCC 59.766 50.000 0.00 0.00 0.00 4.46
133 134 2.233676 CCCAAATGCCCACTTTAAGTCC 59.766 50.000 0.00 0.00 0.00 3.85
134 135 3.056821 GTCCCAAATGCCCACTTTAAGTC 60.057 47.826 0.00 0.00 0.00 3.01
135 136 2.897326 GTCCCAAATGCCCACTTTAAGT 59.103 45.455 0.00 0.00 0.00 2.24
136 137 3.165071 AGTCCCAAATGCCCACTTTAAG 58.835 45.455 0.00 0.00 0.00 1.85
137 138 3.252554 AGTCCCAAATGCCCACTTTAA 57.747 42.857 0.00 0.00 0.00 1.52
138 139 2.990740 AGTCCCAAATGCCCACTTTA 57.009 45.000 0.00 0.00 0.00 1.85
139 140 2.101640 AAGTCCCAAATGCCCACTTT 57.898 45.000 0.00 0.00 0.00 2.66
140 141 2.990740 TAAGTCCCAAATGCCCACTT 57.009 45.000 0.00 0.00 0.00 3.16
141 142 2.311542 TCATAAGTCCCAAATGCCCACT 59.688 45.455 0.00 0.00 0.00 4.00
142 143 2.733956 TCATAAGTCCCAAATGCCCAC 58.266 47.619 0.00 0.00 0.00 4.61
143 144 3.464720 TTCATAAGTCCCAAATGCCCA 57.535 42.857 0.00 0.00 0.00 5.36
144 145 6.323739 TCTTATTTCATAAGTCCCAAATGCCC 59.676 38.462 3.93 0.00 42.21 5.36
145 146 7.068716 AGTCTTATTTCATAAGTCCCAAATGCC 59.931 37.037 3.93 0.00 42.21 4.40
146 147 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
147 148 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
148 149 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
149 150 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
150 151 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
151 152 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
152 153 8.478877 TCTTGAGAGTCTTATTTCATAAGTCCC 58.521 37.037 0.00 0.00 42.21 4.46
153 154 9.877178 TTCTTGAGAGTCTTATTTCATAAGTCC 57.123 33.333 0.00 0.00 42.21 3.85
155 156 9.883142 CCTTCTTGAGAGTCTTATTTCATAAGT 57.117 33.333 0.00 0.00 42.21 2.24
156 157 9.323985 CCCTTCTTGAGAGTCTTATTTCATAAG 57.676 37.037 0.00 0.00 42.78 1.73
157 158 9.046846 TCCCTTCTTGAGAGTCTTATTTCATAA 57.953 33.333 0.00 0.00 0.00 1.90
158 159 8.478877 GTCCCTTCTTGAGAGTCTTATTTCATA 58.521 37.037 0.00 0.00 0.00 2.15
159 160 7.181845 AGTCCCTTCTTGAGAGTCTTATTTCAT 59.818 37.037 0.00 0.00 0.00 2.57
160 161 6.498651 AGTCCCTTCTTGAGAGTCTTATTTCA 59.501 38.462 0.00 0.00 0.00 2.69
161 162 6.941857 AGTCCCTTCTTGAGAGTCTTATTTC 58.058 40.000 0.00 0.00 0.00 2.17
162 163 6.943899 AGTCCCTTCTTGAGAGTCTTATTT 57.056 37.500 0.00 0.00 0.00 1.40
163 164 6.943899 AAGTCCCTTCTTGAGAGTCTTATT 57.056 37.500 0.00 0.00 0.00 1.40
164 165 9.362151 CTATAAGTCCCTTCTTGAGAGTCTTAT 57.638 37.037 0.00 0.00 32.14 1.73
165 166 7.780745 CCTATAAGTCCCTTCTTGAGAGTCTTA 59.219 40.741 0.00 0.00 0.00 2.10
166 167 6.609616 CCTATAAGTCCCTTCTTGAGAGTCTT 59.390 42.308 0.00 0.00 0.00 3.01
167 168 6.133356 CCTATAAGTCCCTTCTTGAGAGTCT 58.867 44.000 0.00 0.00 0.00 3.24
168 169 5.303333 CCCTATAAGTCCCTTCTTGAGAGTC 59.697 48.000 0.00 0.00 0.00 3.36
169 170 5.043281 TCCCTATAAGTCCCTTCTTGAGAGT 60.043 44.000 0.00 0.00 0.00 3.24
170 171 5.303333 GTCCCTATAAGTCCCTTCTTGAGAG 59.697 48.000 0.00 0.00 0.00 3.20
171 172 5.043281 AGTCCCTATAAGTCCCTTCTTGAGA 60.043 44.000 0.00 0.00 0.00 3.27
172 173 5.212745 AGTCCCTATAAGTCCCTTCTTGAG 58.787 45.833 0.00 0.00 0.00 3.02
173 174 5.222278 AGTCCCTATAAGTCCCTTCTTGA 57.778 43.478 0.00 0.00 0.00 3.02
174 175 5.959583 AAGTCCCTATAAGTCCCTTCTTG 57.040 43.478 0.00 0.00 0.00 3.02
175 176 6.754178 ACTAAGTCCCTATAAGTCCCTTCTT 58.246 40.000 0.00 0.00 0.00 2.52
176 177 6.358443 ACTAAGTCCCTATAAGTCCCTTCT 57.642 41.667 0.00 0.00 0.00 2.85
177 178 6.383436 ACAACTAAGTCCCTATAAGTCCCTTC 59.617 42.308 0.00 0.00 0.00 3.46
178 179 6.269974 ACAACTAAGTCCCTATAAGTCCCTT 58.730 40.000 0.00 0.00 0.00 3.95
179 180 5.851418 ACAACTAAGTCCCTATAAGTCCCT 58.149 41.667 0.00 0.00 0.00 4.20
180 181 7.666063 TTACAACTAAGTCCCTATAAGTCCC 57.334 40.000 0.00 0.00 0.00 4.46
187 188 9.448587 AAGACCATATTACAACTAAGTCCCTAT 57.551 33.333 0.00 0.00 0.00 2.57
188 189 8.849543 AAGACCATATTACAACTAAGTCCCTA 57.150 34.615 0.00 0.00 0.00 3.53
189 190 7.750947 AAGACCATATTACAACTAAGTCCCT 57.249 36.000 0.00 0.00 0.00 4.20
190 191 8.803397 AAAAGACCATATTACAACTAAGTCCC 57.197 34.615 0.00 0.00 0.00 4.46
197 198 9.396022 CATGGACTAAAAGACCATATTACAACT 57.604 33.333 9.96 0.00 46.31 3.16
198 199 9.174166 ACATGGACTAAAAGACCATATTACAAC 57.826 33.333 9.96 0.00 46.31 3.32
199 200 9.747898 AACATGGACTAAAAGACCATATTACAA 57.252 29.630 9.96 0.00 46.31 2.41
203 204 9.975218 ACTTAACATGGACTAAAAGACCATATT 57.025 29.630 9.96 8.42 46.31 1.28
204 205 9.614792 GACTTAACATGGACTAAAAGACCATAT 57.385 33.333 9.96 6.06 46.31 1.78
205 206 8.044908 GGACTTAACATGGACTAAAAGACCATA 58.955 37.037 9.96 0.00 46.31 2.74
207 208 6.235664 GGACTTAACATGGACTAAAAGACCA 58.764 40.000 0.00 0.74 43.65 4.02
208 209 5.646793 GGGACTTAACATGGACTAAAAGACC 59.353 44.000 0.00 1.56 0.00 3.85
209 210 6.235664 TGGGACTTAACATGGACTAAAAGAC 58.764 40.000 0.00 0.00 0.00 3.01
210 211 6.442541 TGGGACTTAACATGGACTAAAAGA 57.557 37.500 0.00 0.00 0.00 2.52
211 212 5.648092 CCTGGGACTTAACATGGACTAAAAG 59.352 44.000 0.00 0.00 0.00 2.27
212 213 5.311121 TCCTGGGACTTAACATGGACTAAAA 59.689 40.000 0.00 0.00 0.00 1.52
213 214 4.847512 TCCTGGGACTTAACATGGACTAAA 59.152 41.667 0.00 0.00 0.00 1.85
214 215 4.431378 TCCTGGGACTTAACATGGACTAA 58.569 43.478 0.00 0.00 0.00 2.24
215 216 4.069312 TCCTGGGACTTAACATGGACTA 57.931 45.455 0.00 0.00 0.00 2.59
216 217 2.915869 TCCTGGGACTTAACATGGACT 58.084 47.619 0.00 0.00 0.00 3.85
217 218 3.713826 TTCCTGGGACTTAACATGGAC 57.286 47.619 0.00 0.00 0.00 4.02
218 219 3.849574 TGATTCCTGGGACTTAACATGGA 59.150 43.478 0.00 0.00 0.00 3.41
219 220 4.235079 TGATTCCTGGGACTTAACATGG 57.765 45.455 0.00 0.00 0.00 3.66
220 221 5.476599 TGTTTGATTCCTGGGACTTAACATG 59.523 40.000 0.00 0.00 0.00 3.21
221 222 5.640147 TGTTTGATTCCTGGGACTTAACAT 58.360 37.500 0.00 0.00 0.00 2.71
222 223 5.055265 TGTTTGATTCCTGGGACTTAACA 57.945 39.130 0.00 0.00 0.00 2.41
223 224 4.459337 CCTGTTTGATTCCTGGGACTTAAC 59.541 45.833 0.00 0.00 0.00 2.01
224 225 4.105697 ACCTGTTTGATTCCTGGGACTTAA 59.894 41.667 0.00 0.00 0.00 1.85
225 226 3.655777 ACCTGTTTGATTCCTGGGACTTA 59.344 43.478 0.00 0.00 0.00 2.24
226 227 2.447047 ACCTGTTTGATTCCTGGGACTT 59.553 45.455 0.00 0.00 0.00 3.01
227 228 2.065799 ACCTGTTTGATTCCTGGGACT 58.934 47.619 0.00 0.00 0.00 3.85
228 229 2.586648 ACCTGTTTGATTCCTGGGAC 57.413 50.000 0.00 0.00 0.00 4.46
229 230 3.519510 CTCTACCTGTTTGATTCCTGGGA 59.480 47.826 0.00 0.00 0.00 4.37
230 231 3.519510 TCTCTACCTGTTTGATTCCTGGG 59.480 47.826 0.00 0.00 0.00 4.45
231 232 4.223923 AGTCTCTACCTGTTTGATTCCTGG 59.776 45.833 0.00 0.00 0.00 4.45
232 233 5.413309 AGTCTCTACCTGTTTGATTCCTG 57.587 43.478 0.00 0.00 0.00 3.86
233 234 6.441088 AAAGTCTCTACCTGTTTGATTCCT 57.559 37.500 0.00 0.00 0.00 3.36
234 235 7.511959 AAAAAGTCTCTACCTGTTTGATTCC 57.488 36.000 0.00 0.00 0.00 3.01
235 236 8.722394 CCTAAAAAGTCTCTACCTGTTTGATTC 58.278 37.037 0.00 0.00 0.00 2.52
236 237 7.665974 CCCTAAAAAGTCTCTACCTGTTTGATT 59.334 37.037 0.00 0.00 0.00 2.57
237 238 7.017254 TCCCTAAAAAGTCTCTACCTGTTTGAT 59.983 37.037 0.00 0.00 0.00 2.57
238 239 6.328148 TCCCTAAAAAGTCTCTACCTGTTTGA 59.672 38.462 0.00 0.00 0.00 2.69
239 240 6.427242 GTCCCTAAAAAGTCTCTACCTGTTTG 59.573 42.308 0.00 0.00 0.00 2.93
240 241 6.329460 AGTCCCTAAAAAGTCTCTACCTGTTT 59.671 38.462 0.00 0.00 0.00 2.83
241 242 5.845065 AGTCCCTAAAAAGTCTCTACCTGTT 59.155 40.000 0.00 0.00 0.00 3.16
242 243 5.404395 AGTCCCTAAAAAGTCTCTACCTGT 58.596 41.667 0.00 0.00 0.00 4.00
243 244 6.166982 CAAGTCCCTAAAAAGTCTCTACCTG 58.833 44.000 0.00 0.00 0.00 4.00
244 245 5.248705 CCAAGTCCCTAAAAAGTCTCTACCT 59.751 44.000 0.00 0.00 0.00 3.08
245 246 5.247792 TCCAAGTCCCTAAAAAGTCTCTACC 59.752 44.000 0.00 0.00 0.00 3.18
246 247 6.356186 TCCAAGTCCCTAAAAAGTCTCTAC 57.644 41.667 0.00 0.00 0.00 2.59
247 248 6.557633 AGTTCCAAGTCCCTAAAAAGTCTCTA 59.442 38.462 0.00 0.00 0.00 2.43
248 249 5.369993 AGTTCCAAGTCCCTAAAAAGTCTCT 59.630 40.000 0.00 0.00 0.00 3.10
249 250 5.622180 AGTTCCAAGTCCCTAAAAAGTCTC 58.378 41.667 0.00 0.00 0.00 3.36
250 251 5.648330 AGTTCCAAGTCCCTAAAAAGTCT 57.352 39.130 0.00 0.00 0.00 3.24
251 252 7.997773 ATAAGTTCCAAGTCCCTAAAAAGTC 57.002 36.000 0.00 0.00 0.00 3.01
252 253 9.516546 CTTATAAGTTCCAAGTCCCTAAAAAGT 57.483 33.333 4.18 0.00 0.00 2.66
253 254 9.516546 ACTTATAAGTTCCAAGTCCCTAAAAAG 57.483 33.333 12.50 0.00 35.21 2.27
254 255 9.871175 AACTTATAAGTTCCAAGTCCCTAAAAA 57.129 29.630 22.49 0.00 45.65 1.94
255 256 9.292195 CAACTTATAAGTTCCAAGTCCCTAAAA 57.708 33.333 24.77 0.00 45.65 1.52
256 257 7.886446 CCAACTTATAAGTTCCAAGTCCCTAAA 59.114 37.037 24.77 0.00 45.65 1.85
257 258 7.399634 CCAACTTATAAGTTCCAAGTCCCTAA 58.600 38.462 24.77 0.00 45.65 2.69
258 259 6.069847 CCCAACTTATAAGTTCCAAGTCCCTA 60.070 42.308 24.77 0.00 45.65 3.53
259 260 5.281037 CCCAACTTATAAGTTCCAAGTCCCT 60.281 44.000 24.77 1.00 45.65 4.20
260 261 4.948004 CCCAACTTATAAGTTCCAAGTCCC 59.052 45.833 24.77 0.00 45.65 4.46
261 262 5.646793 GTCCCAACTTATAAGTTCCAAGTCC 59.353 44.000 24.77 8.42 45.65 3.85
262 263 6.473758 AGTCCCAACTTATAAGTTCCAAGTC 58.526 40.000 24.77 14.17 45.65 3.01
263 264 6.449830 AGTCCCAACTTATAAGTTCCAAGT 57.550 37.500 24.77 13.87 45.65 3.16
264 265 8.857694 TTTAGTCCCAACTTATAAGTTCCAAG 57.142 34.615 24.77 14.94 45.65 3.61
265 266 9.816787 ATTTTAGTCCCAACTTATAAGTTCCAA 57.183 29.630 24.77 12.01 45.65 3.53
291 292 9.629878 TGTTTGGTTCATAAGTTTTAGGACTTA 57.370 29.630 0.54 0.54 43.89 2.24
292 293 8.528044 TGTTTGGTTCATAAGTTTTAGGACTT 57.472 30.769 0.00 0.00 42.27 3.01
293 294 7.230712 CCTGTTTGGTTCATAAGTTTTAGGACT 59.769 37.037 0.00 0.00 0.00 3.85
294 295 7.368059 CCTGTTTGGTTCATAAGTTTTAGGAC 58.632 38.462 0.00 0.00 0.00 3.85
295 296 6.492087 CCCTGTTTGGTTCATAAGTTTTAGGA 59.508 38.462 0.00 0.00 0.00 2.94
296 297 6.687604 CCCTGTTTGGTTCATAAGTTTTAGG 58.312 40.000 0.00 0.00 0.00 2.69
297 298 6.156519 GCCCTGTTTGGTTCATAAGTTTTAG 58.843 40.000 0.00 0.00 0.00 1.85
298 299 5.011227 GGCCCTGTTTGGTTCATAAGTTTTA 59.989 40.000 0.00 0.00 0.00 1.52
299 300 4.202315 GGCCCTGTTTGGTTCATAAGTTTT 60.202 41.667 0.00 0.00 0.00 2.43
300 301 3.323691 GGCCCTGTTTGGTTCATAAGTTT 59.676 43.478 0.00 0.00 0.00 2.66
301 302 2.897326 GGCCCTGTTTGGTTCATAAGTT 59.103 45.455 0.00 0.00 0.00 2.66
302 303 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
303 304 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
304 305 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
305 306 4.277476 CATTAGGCCCTGTTTGGTTCATA 58.723 43.478 0.00 0.00 0.00 2.15
306 307 2.990740 TTAGGCCCTGTTTGGTTCAT 57.009 45.000 0.00 0.00 0.00 2.57
307 308 2.524306 CATTAGGCCCTGTTTGGTTCA 58.476 47.619 0.00 0.00 0.00 3.18
308 309 1.204704 GCATTAGGCCCTGTTTGGTTC 59.795 52.381 0.00 0.00 36.11 3.62
309 310 1.266178 GCATTAGGCCCTGTTTGGTT 58.734 50.000 0.00 0.00 36.11 3.67
310 311 0.114168 TGCATTAGGCCCTGTTTGGT 59.886 50.000 0.00 0.00 43.89 3.67
311 312 1.488390 ATGCATTAGGCCCTGTTTGG 58.512 50.000 0.00 0.00 43.89 3.28
312 313 2.234414 ACAATGCATTAGGCCCTGTTTG 59.766 45.455 12.53 6.50 43.89 2.93
313 314 2.539302 ACAATGCATTAGGCCCTGTTT 58.461 42.857 12.53 0.00 43.89 2.83
314 315 2.236489 ACAATGCATTAGGCCCTGTT 57.764 45.000 12.53 0.00 43.89 3.16
315 316 2.236489 AACAATGCATTAGGCCCTGT 57.764 45.000 12.53 1.42 43.89 4.00
316 317 4.402155 TCTTAAACAATGCATTAGGCCCTG 59.598 41.667 12.53 0.70 43.89 4.45
317 318 4.402474 GTCTTAAACAATGCATTAGGCCCT 59.598 41.667 12.53 0.00 43.89 5.19
318 319 4.402474 AGTCTTAAACAATGCATTAGGCCC 59.598 41.667 12.53 0.00 43.89 5.80
319 320 5.105756 ACAGTCTTAAACAATGCATTAGGCC 60.106 40.000 12.53 0.00 43.89 5.19
320 321 5.954335 ACAGTCTTAAACAATGCATTAGGC 58.046 37.500 12.53 7.14 45.13 3.93
321 322 8.039603 TGTACAGTCTTAAACAATGCATTAGG 57.960 34.615 12.53 3.20 0.00 2.69
340 341 4.471904 TGTAGCCCTCTTGATTGTACAG 57.528 45.455 0.00 0.00 0.00 2.74
350 351 7.108847 GCTATATCATGATTTGTAGCCCTCTT 58.891 38.462 23.44 0.27 30.93 2.85
399 400 7.864379 CGGTTCAGTCTCTTGTTAGTTAGTAAA 59.136 37.037 0.00 0.00 0.00 2.01
414 415 4.674281 ATATTCTTCCCGGTTCAGTCTC 57.326 45.455 0.00 0.00 0.00 3.36
415 416 5.661759 AGTAATATTCTTCCCGGTTCAGTCT 59.338 40.000 0.00 0.00 0.00 3.24
416 417 5.915175 AGTAATATTCTTCCCGGTTCAGTC 58.085 41.667 0.00 0.00 0.00 3.51
417 418 5.952347 AGTAATATTCTTCCCGGTTCAGT 57.048 39.130 0.00 0.00 0.00 3.41
418 419 6.183360 TGGTAGTAATATTCTTCCCGGTTCAG 60.183 42.308 0.00 0.00 0.00 3.02
419 420 5.662208 TGGTAGTAATATTCTTCCCGGTTCA 59.338 40.000 0.00 0.00 0.00 3.18
420 421 6.165700 TGGTAGTAATATTCTTCCCGGTTC 57.834 41.667 0.00 0.00 0.00 3.62
421 422 6.564557 TTGGTAGTAATATTCTTCCCGGTT 57.435 37.500 0.00 0.00 0.00 4.44
422 423 6.564557 TTTGGTAGTAATATTCTTCCCGGT 57.435 37.500 0.00 0.00 0.00 5.28
423 424 6.824704 TGTTTTGGTAGTAATATTCTTCCCGG 59.175 38.462 0.00 0.00 0.00 5.73
424 425 7.767198 TCTGTTTTGGTAGTAATATTCTTCCCG 59.233 37.037 0.00 0.00 0.00 5.14
458 459 2.112190 TGCACCGGATATGTTCCAGTA 58.888 47.619 9.46 0.00 45.78 2.74
463 464 0.107410 TGGGTGCACCGGATATGTTC 60.107 55.000 29.08 12.57 44.64 3.18
464 465 0.393808 GTGGGTGCACCGGATATGTT 60.394 55.000 29.08 0.00 44.64 2.71
465 466 1.223487 GTGGGTGCACCGGATATGT 59.777 57.895 29.08 0.00 44.64 2.29
467 468 1.223487 GTGTGGGTGCACCGGATAT 59.777 57.895 29.08 0.00 44.64 1.63
469 470 2.829384 AAGTGTGGGTGCACCGGAT 61.829 57.895 29.08 10.62 44.64 4.18
470 471 3.484806 AAGTGTGGGTGCACCGGA 61.485 61.111 29.08 15.83 44.64 5.14
471 472 3.286751 CAAGTGTGGGTGCACCGG 61.287 66.667 29.08 0.00 44.64 5.28
472 473 2.515991 ACAAGTGTGGGTGCACCG 60.516 61.111 29.08 15.85 44.64 4.94
473 474 3.119193 CACAAGTGTGGGTGCACC 58.881 61.111 28.57 28.57 42.10 5.01
484 485 0.535102 GCACCTGTAGCACCACAAGT 60.535 55.000 0.00 0.00 0.00 3.16
485 486 0.534877 TGCACCTGTAGCACCACAAG 60.535 55.000 0.00 0.00 37.02 3.16
486 487 1.529309 TGCACCTGTAGCACCACAA 59.471 52.632 0.00 0.00 37.02 3.33
487 488 3.235369 TGCACCTGTAGCACCACA 58.765 55.556 0.00 0.00 37.02 4.17
492 493 2.290287 ATCCGGTGCACCTGTAGCA 61.290 57.895 32.28 11.44 40.19 3.49
493 494 1.815421 CATCCGGTGCACCTGTAGC 60.815 63.158 32.28 6.38 0.00 3.58
494 495 4.521075 CATCCGGTGCACCTGTAG 57.479 61.111 32.28 17.23 0.00 2.74
507 508 2.325583 TGAAATGTCCTACGGCATCC 57.674 50.000 0.00 0.00 0.00 3.51
508 509 4.695217 TTTTGAAATGTCCTACGGCATC 57.305 40.909 0.00 0.00 0.00 3.91
532 533 9.467258 CAGAATTGCTAGATTTTCTTTTTCACA 57.533 29.630 0.00 0.00 0.00 3.58
533 534 9.683069 TCAGAATTGCTAGATTTTCTTTTTCAC 57.317 29.630 0.00 0.00 0.00 3.18
543 544 9.852091 GACTTTCATTTCAGAATTGCTAGATTT 57.148 29.630 0.00 0.00 0.00 2.17
544 545 8.180267 CGACTTTCATTTCAGAATTGCTAGATT 58.820 33.333 0.00 0.00 0.00 2.40
545 546 7.678218 GCGACTTTCATTTCAGAATTGCTAGAT 60.678 37.037 0.00 0.00 0.00 1.98
546 547 6.402550 GCGACTTTCATTTCAGAATTGCTAGA 60.403 38.462 0.00 0.00 0.00 2.43
547 548 5.736358 GCGACTTTCATTTCAGAATTGCTAG 59.264 40.000 0.78 3.53 0.00 3.42
548 549 5.631026 GCGACTTTCATTTCAGAATTGCTA 58.369 37.500 0.78 0.00 0.00 3.49
549 550 4.479619 GCGACTTTCATTTCAGAATTGCT 58.520 39.130 0.78 0.00 0.00 3.91
550 551 3.299020 CGCGACTTTCATTTCAGAATTGC 59.701 43.478 0.00 0.00 0.00 3.56
551 552 4.711721 TCGCGACTTTCATTTCAGAATTG 58.288 39.130 3.71 0.00 0.00 2.32
552 553 5.551760 ATCGCGACTTTCATTTCAGAATT 57.448 34.783 12.93 0.00 0.00 2.17
553 554 5.352569 AGAATCGCGACTTTCATTTCAGAAT 59.647 36.000 21.00 0.00 0.00 2.40
554 555 4.690748 AGAATCGCGACTTTCATTTCAGAA 59.309 37.500 21.00 0.00 0.00 3.02
555 556 4.245660 AGAATCGCGACTTTCATTTCAGA 58.754 39.130 21.00 0.00 0.00 3.27
565 566 2.996621 CCTTCAGAAAGAATCGCGACTT 59.003 45.455 12.93 8.84 35.25 3.01
567 568 2.338500 ACCTTCAGAAAGAATCGCGAC 58.662 47.619 12.93 0.00 35.25 5.19
570 571 4.436183 GCACTTACCTTCAGAAAGAATCGC 60.436 45.833 0.00 0.00 35.25 4.58
604 605 1.948104 TGTTGGACAAGACTGAACCG 58.052 50.000 0.00 0.00 0.00 4.44
606 607 4.695217 TGTTTGTTGGACAAGACTGAAC 57.305 40.909 0.00 0.00 39.53 3.18
667 674 6.989169 GTCATTCAACATCTCTGCCTAGTTAT 59.011 38.462 0.00 0.00 0.00 1.89
669 676 5.046014 AGTCATTCAACATCTCTGCCTAGTT 60.046 40.000 0.00 0.00 0.00 2.24
670 677 4.469227 AGTCATTCAACATCTCTGCCTAGT 59.531 41.667 0.00 0.00 0.00 2.57
671 678 5.021033 AGTCATTCAACATCTCTGCCTAG 57.979 43.478 0.00 0.00 0.00 3.02
672 679 5.426689 AAGTCATTCAACATCTCTGCCTA 57.573 39.130 0.00 0.00 0.00 3.93
673 680 3.996921 AGTCATTCAACATCTCTGCCT 57.003 42.857 0.00 0.00 0.00 4.75
674 681 5.423015 TCTAAGTCATTCAACATCTCTGCC 58.577 41.667 0.00 0.00 0.00 4.85
675 682 6.974932 TTCTAAGTCATTCAACATCTCTGC 57.025 37.500 0.00 0.00 0.00 4.26
677 684 9.606631 GGTATTTCTAAGTCATTCAACATCTCT 57.393 33.333 0.00 0.00 0.00 3.10
678 685 9.606631 AGGTATTTCTAAGTCATTCAACATCTC 57.393 33.333 0.00 0.00 0.00 2.75
679 686 9.965902 AAGGTATTTCTAAGTCATTCAACATCT 57.034 29.630 0.00 0.00 0.00 2.90
681 688 9.739276 TGAAGGTATTTCTAAGTCATTCAACAT 57.261 29.630 0.00 0.00 36.71 2.71
682 689 9.219603 CTGAAGGTATTTCTAAGTCATTCAACA 57.780 33.333 0.00 0.00 36.71 3.33
683 690 9.220767 ACTGAAGGTATTTCTAAGTCATTCAAC 57.779 33.333 0.00 0.00 36.71 3.18
684 691 9.793259 AACTGAAGGTATTTCTAAGTCATTCAA 57.207 29.630 0.00 0.00 36.71 2.69
685 692 9.793259 AAACTGAAGGTATTTCTAAGTCATTCA 57.207 29.630 0.00 0.00 36.71 2.57
714 721 4.497473 CCTGAAGGTATTCGCACAAAAA 57.503 40.909 0.00 0.00 38.34 1.94
737 744 6.350027 CCTTTGTCATGTGTGTGCCATAATTA 60.350 38.462 0.00 0.00 0.00 1.40
746 753 4.746115 CCATTTTCCTTTGTCATGTGTGTG 59.254 41.667 0.00 0.00 0.00 3.82
802 818 6.908825 TGCTTTGTTTGTGTCCATATTCTAC 58.091 36.000 0.00 0.00 0.00 2.59
813 829 3.694734 CATCGTCTTGCTTTGTTTGTGT 58.305 40.909 0.00 0.00 0.00 3.72
815 831 2.098934 TGCATCGTCTTGCTTTGTTTGT 59.901 40.909 8.68 0.00 43.18 2.83
816 832 2.730069 TGCATCGTCTTGCTTTGTTTG 58.270 42.857 8.68 0.00 43.18 2.93
824 840 1.421485 CCGAGTTGCATCGTCTTGC 59.579 57.895 8.75 1.68 41.12 4.01
894 910 3.776969 AGAGAGTTGGTATCTGGATGCAA 59.223 43.478 0.00 0.00 0.00 4.08
985 1001 0.752743 GCCATTACAGCCCAGATGCA 60.753 55.000 0.00 0.00 0.00 3.96
993 1009 0.737219 CTGAAGCAGCCATTACAGCC 59.263 55.000 0.00 0.00 0.00 4.85
1160 1176 6.006449 TGCACTCTCTCAGCTATATGTATCA 58.994 40.000 0.00 0.00 0.00 2.15
1233 1249 1.088340 CATCCTCAGCTTGACAGGCG 61.088 60.000 3.65 0.00 34.52 5.52
1291 1307 1.293062 ATCATGCCCCTGTCTTCAGT 58.707 50.000 0.00 0.00 39.82 3.41
1395 1417 4.890088 ACTGATTTACCGTTGAGTTGCTA 58.110 39.130 0.00 0.00 0.00 3.49
1400 1422 2.298163 ACCGACTGATTTACCGTTGAGT 59.702 45.455 0.00 0.00 0.00 3.41
1527 1549 5.426504 CTGCTGTCCTCTATCTTCACAAAT 58.573 41.667 0.00 0.00 0.00 2.32
1635 1657 7.901029 TGATCTGAACAAGTAATCTCTTCAGT 58.099 34.615 0.00 0.00 38.35 3.41
1726 1748 5.353678 GGTCATACACTCTCTGTACTAACGT 59.646 44.000 0.00 0.00 38.22 3.99
1747 1769 3.441222 TGATCTGTGTCATGCAATTGGTC 59.559 43.478 7.72 0.00 0.00 4.02
1752 1774 4.763279 TCAAAGTGATCTGTGTCATGCAAT 59.237 37.500 0.00 0.00 31.27 3.56
1755 1777 4.959596 ATCAAAGTGATCTGTGTCATGC 57.040 40.909 0.00 0.00 29.59 4.06
2040 2086 8.038351 TGCATGATCTTTGTTGATTCATTCATT 58.962 29.630 0.00 0.00 33.34 2.57
2056 2102 3.894759 AGCCATGTAAGTGCATGATCTT 58.105 40.909 10.53 2.36 46.65 2.40
2079 2125 4.875561 ACTCCAGTAGTCTTTGTCTTCC 57.124 45.455 0.00 0.00 30.33 3.46
2085 2131 7.065803 TGTGAAAAGAAACTCCAGTAGTCTTTG 59.934 37.037 14.57 0.00 39.53 2.77
2086 2132 7.110155 TGTGAAAAGAAACTCCAGTAGTCTTT 58.890 34.615 10.49 10.49 40.89 2.52
2098 2144 5.459762 CGAATGCACATTGTGAAAAGAAACT 59.540 36.000 20.77 0.00 35.23 2.66
2150 2196 1.821216 TCGGCCAATTTCTTCCAGTC 58.179 50.000 2.24 0.00 0.00 3.51
2158 2204 2.035321 TCACCACTTTTCGGCCAATTTC 59.965 45.455 2.24 0.00 0.00 2.17
2278 2324 5.947228 TCCTTTTGCTCTATTTGACACAG 57.053 39.130 0.00 0.00 0.00 3.66
2531 2577 4.201930 CGTGAACTACATAGTGGTCCTCTC 60.202 50.000 0.00 0.00 36.50 3.20
2619 2665 8.830580 CGAACATTTCTTGGAATACATACATCT 58.169 33.333 0.00 0.00 0.00 2.90
2978 3066 7.764141 TCCTTTTTCATGATCATGTCTTGAA 57.236 32.000 30.01 17.83 44.54 2.69
3307 5987 3.786553 TCAGGGAAAGAGGTAGTAAGCA 58.213 45.455 0.00 0.00 0.00 3.91
3711 6412 1.550524 AGTCGAGCACTTATTCAGCCA 59.449 47.619 0.00 0.00 26.56 4.75
3712 6413 1.929836 CAGTCGAGCACTTATTCAGCC 59.070 52.381 0.00 0.00 30.26 4.85
3766 6473 6.552859 TTTGCGTATTCTTGATTCTTGTCA 57.447 33.333 0.00 0.00 0.00 3.58
3793 6500 6.654161 CCATTCATTATTTAGAGCCTCCTGAG 59.346 42.308 0.00 0.00 0.00 3.35
3820 6527 1.886542 GAGACCCCAAAACACCATCAC 59.113 52.381 0.00 0.00 0.00 3.06
3823 6530 1.780309 TGAGAGACCCCAAAACACCAT 59.220 47.619 0.00 0.00 0.00 3.55
3826 6533 2.222027 CACTGAGAGACCCCAAAACAC 58.778 52.381 0.00 0.00 0.00 3.32
3836 6543 1.188219 TGGCCTGGACACTGAGAGAC 61.188 60.000 3.32 0.00 0.00 3.36
3908 6615 1.531149 CGAACTTCGCTGGTGTCAATT 59.469 47.619 0.00 0.00 31.14 2.32
4078 6803 5.044846 AGCCACAAATTAGGGTGAGTAGAAT 60.045 40.000 6.44 0.00 37.18 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.