Multiple sequence alignment - TraesCS2A01G048700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G048700 chr2A 100.000 2216 0 0 1 2216 18858329 18860544 0.000000e+00 4093.0
1 TraesCS2A01G048700 chr2A 85.734 715 91 10 1381 2090 334910239 334910947 0.000000e+00 745.0
2 TraesCS2A01G048700 chr2A 80.577 659 98 15 686 1334 18903984 18904622 4.280000e-132 481.0
3 TraesCS2A01G048700 chr2B 92.683 1640 104 11 453 2088 29743786 29742159 0.000000e+00 2350.0
4 TraesCS2A01G048700 chr2B 76.984 882 166 18 451 1305 29722020 29721149 9.260000e-129 470.0
5 TraesCS2A01G048700 chr2B 78.416 644 109 19 710 1336 29731381 29730751 2.060000e-105 392.0
6 TraesCS2A01G048700 chr2B 99.206 126 1 0 2091 2216 687187 687062 6.160000e-56 228.0
7 TraesCS2A01G048700 chr2B 97.674 129 3 0 2088 2216 779633406 779633278 2.860000e-54 222.0
8 TraesCS2A01G048700 chr2B 95.035 141 6 1 2077 2216 782126785 782126645 1.030000e-53 220.0
9 TraesCS2A01G048700 chr2D 92.047 767 52 7 610 1371 17456812 17457574 0.000000e+00 1070.0
10 TraesCS2A01G048700 chr2D 86.130 721 93 7 1373 2090 245520805 245520089 0.000000e+00 771.0
11 TraesCS2A01G048700 chr2D 84.711 726 101 6 1373 2090 474664550 474665273 0.000000e+00 717.0
12 TraesCS2A01G048700 chr2D 84.647 723 103 8 1373 2090 474685523 474684804 0.000000e+00 713.0
13 TraesCS2A01G048700 chr2D 78.901 910 159 22 451 1336 17497051 17497951 8.820000e-164 586.0
14 TraesCS2A01G048700 chr2D 88.827 179 13 4 1 178 146394842 146395014 1.720000e-51 213.0
15 TraesCS2A01G048700 chr2D 92.708 96 6 1 183 277 381901682 381901587 1.070000e-28 137.0
16 TraesCS2A01G048700 chr2D 88.235 102 10 2 183 282 640154881 640154982 1.070000e-23 121.0
17 TraesCS2A01G048700 chr7D 85.511 704 96 6 1379 2079 211615847 211615147 0.000000e+00 730.0
18 TraesCS2A01G048700 chr7D 84.786 723 99 10 1374 2090 497647599 497648316 0.000000e+00 715.0
19 TraesCS2A01G048700 chr7D 90.722 97 8 1 183 278 27955034 27955130 6.420000e-26 128.0
20 TraesCS2A01G048700 chr3B 84.869 727 100 7 1373 2091 655289110 655289834 0.000000e+00 725.0
21 TraesCS2A01G048700 chr1D 84.765 722 104 6 1373 2090 295400822 295400103 0.000000e+00 719.0
22 TraesCS2A01G048700 chr1D 100.000 28 0 0 34 61 362603447 362603420 4.000000e-03 52.8
23 TraesCS2A01G048700 chrUn 97.744 133 3 0 2084 2216 12282326 12282194 1.710000e-56 230.0
24 TraesCS2A01G048700 chr5A 98.462 130 2 0 2087 2216 541477723 541477852 1.710000e-56 230.0
25 TraesCS2A01G048700 chr3A 98.450 129 2 0 2088 2216 746586124 746586252 6.160000e-56 228.0
26 TraesCS2A01G048700 chr3A 97.692 130 3 0 2087 2216 679364336 679364207 7.960000e-55 224.0
27 TraesCS2A01G048700 chr3A 91.489 94 7 1 185 277 8970479 8970572 6.420000e-26 128.0
28 TraesCS2A01G048700 chr3A 89.231 65 4 2 1 62 217958113 217958177 6.560000e-11 78.7
29 TraesCS2A01G048700 chr6B 97.710 131 3 0 2086 2216 7095143 7095013 2.210000e-55 226.0
30 TraesCS2A01G048700 chr6B 91.919 99 7 1 183 280 143631534 143631436 1.070000e-28 137.0
31 TraesCS2A01G048700 chr6B 89.583 96 9 1 183 277 698412015 698412110 1.070000e-23 121.0
32 TraesCS2A01G048700 chr6B 89.362 94 9 1 185 277 700526597 700526690 1.390000e-22 117.0
33 TraesCS2A01G048700 chr1B 98.438 128 2 0 2089 2216 7859899 7859772 2.210000e-55 226.0
34 TraesCS2A01G048700 chr6A 86.420 162 16 3 1 162 48054663 48054818 2.930000e-39 172.0
35 TraesCS2A01G048700 chr6A 83.221 149 17 7 1 148 595787355 595787496 1.790000e-26 130.0
36 TraesCS2A01G048700 chr7B 82.022 178 21 9 1 178 567542535 567542701 8.250000e-30 141.0
37 TraesCS2A01G048700 chr4A 80.328 183 25 7 1 178 4153224 4153400 6.420000e-26 128.0
38 TraesCS2A01G048700 chr5D 90.625 96 8 1 183 277 483903103 483903008 2.310000e-25 126.0
39 TraesCS2A01G048700 chr3D 88.889 99 9 2 183 279 598422921 598422823 1.070000e-23 121.0
40 TraesCS2A01G048700 chr7A 89.655 58 6 0 1 58 33802704 33802647 8.490000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G048700 chr2A 18858329 18860544 2215 False 4093 4093 100.000 1 2216 1 chr2A.!!$F1 2215
1 TraesCS2A01G048700 chr2A 334910239 334910947 708 False 745 745 85.734 1381 2090 1 chr2A.!!$F3 709
2 TraesCS2A01G048700 chr2A 18903984 18904622 638 False 481 481 80.577 686 1334 1 chr2A.!!$F2 648
3 TraesCS2A01G048700 chr2B 29742159 29743786 1627 True 2350 2350 92.683 453 2088 1 chr2B.!!$R4 1635
4 TraesCS2A01G048700 chr2B 29721149 29722020 871 True 470 470 76.984 451 1305 1 chr2B.!!$R2 854
5 TraesCS2A01G048700 chr2B 29730751 29731381 630 True 392 392 78.416 710 1336 1 chr2B.!!$R3 626
6 TraesCS2A01G048700 chr2D 17456812 17457574 762 False 1070 1070 92.047 610 1371 1 chr2D.!!$F1 761
7 TraesCS2A01G048700 chr2D 245520089 245520805 716 True 771 771 86.130 1373 2090 1 chr2D.!!$R1 717
8 TraesCS2A01G048700 chr2D 474664550 474665273 723 False 717 717 84.711 1373 2090 1 chr2D.!!$F4 717
9 TraesCS2A01G048700 chr2D 474684804 474685523 719 True 713 713 84.647 1373 2090 1 chr2D.!!$R3 717
10 TraesCS2A01G048700 chr2D 17497051 17497951 900 False 586 586 78.901 451 1336 1 chr2D.!!$F2 885
11 TraesCS2A01G048700 chr7D 211615147 211615847 700 True 730 730 85.511 1379 2079 1 chr7D.!!$R1 700
12 TraesCS2A01G048700 chr7D 497647599 497648316 717 False 715 715 84.786 1374 2090 1 chr7D.!!$F2 716
13 TraesCS2A01G048700 chr3B 655289110 655289834 724 False 725 725 84.869 1373 2091 1 chr3B.!!$F1 718
14 TraesCS2A01G048700 chr1D 295400103 295400822 719 True 719 719 84.765 1373 2090 1 chr1D.!!$R1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.033366 ATGCAAAGTCGGTTTTGGGC 59.967 50.0 12.35 0.0 38.25 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2108 2160 0.03213 TCCGCCGCTAAGATGCTTAG 59.968 55.0 9.3 9.3 0.0 2.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.552132 GAGGTGGAGGAAAGAGAATCC 57.448 52.381 0.00 0.00 37.22 3.01
21 22 2.840651 GAGGTGGAGGAAAGAGAATCCA 59.159 50.000 0.00 0.00 39.55 3.41
22 23 3.457749 GAGGTGGAGGAAAGAGAATCCAT 59.542 47.826 0.00 0.00 43.42 3.41
23 24 4.635473 AGGTGGAGGAAAGAGAATCCATA 58.365 43.478 0.00 0.00 43.42 2.74
24 25 5.039645 AGGTGGAGGAAAGAGAATCCATAA 58.960 41.667 0.00 0.00 43.42 1.90
25 26 5.492524 AGGTGGAGGAAAGAGAATCCATAAA 59.507 40.000 0.00 0.00 43.42 1.40
26 27 6.011628 AGGTGGAGGAAAGAGAATCCATAAAA 60.012 38.462 0.00 0.00 43.42 1.52
27 28 6.663523 GGTGGAGGAAAGAGAATCCATAAAAA 59.336 38.462 0.00 0.00 43.42 1.94
71 72 9.652114 ATTTAAGAGATGATTTCTTAGCCCAAT 57.348 29.630 5.70 1.57 38.13 3.16
76 77 9.902684 AGAGATGATTTCTTAGCCCAATATATG 57.097 33.333 0.00 0.00 33.74 1.78
77 78 9.678260 GAGATGATTTCTTAGCCCAATATATGT 57.322 33.333 0.00 0.00 33.74 2.29
78 79 9.678260 AGATGATTTCTTAGCCCAATATATGTC 57.322 33.333 0.00 0.00 0.00 3.06
79 80 9.453572 GATGATTTCTTAGCCCAATATATGTCA 57.546 33.333 0.00 0.00 0.00 3.58
80 81 8.621532 TGATTTCTTAGCCCAATATATGTCAC 57.378 34.615 0.00 0.00 0.00 3.67
81 82 7.665559 TGATTTCTTAGCCCAATATATGTCACC 59.334 37.037 0.00 0.00 0.00 4.02
82 83 6.508030 TTCTTAGCCCAATATATGTCACCA 57.492 37.500 0.00 0.00 0.00 4.17
83 84 6.702449 TCTTAGCCCAATATATGTCACCAT 57.298 37.500 0.00 0.00 34.97 3.55
84 85 6.475504 TCTTAGCCCAATATATGTCACCATG 58.524 40.000 0.00 0.00 32.29 3.66
85 86 4.999469 AGCCCAATATATGTCACCATGA 57.001 40.909 0.00 0.00 32.29 3.07
86 87 5.525454 AGCCCAATATATGTCACCATGAT 57.475 39.130 0.00 0.00 32.29 2.45
87 88 5.895807 AGCCCAATATATGTCACCATGATT 58.104 37.500 0.00 0.00 32.29 2.57
88 89 6.317312 AGCCCAATATATGTCACCATGATTT 58.683 36.000 0.00 0.00 32.29 2.17
89 90 6.783977 AGCCCAATATATGTCACCATGATTTT 59.216 34.615 0.00 0.00 32.29 1.82
90 91 7.949565 AGCCCAATATATGTCACCATGATTTTA 59.050 33.333 0.00 0.00 32.29 1.52
91 92 8.246180 GCCCAATATATGTCACCATGATTTTAG 58.754 37.037 0.00 0.00 32.29 1.85
92 93 9.519191 CCCAATATATGTCACCATGATTTTAGA 57.481 33.333 0.00 0.00 32.29 2.10
98 99 5.964758 TGTCACCATGATTTTAGAAATGGC 58.035 37.500 0.00 0.00 42.83 4.40
99 100 5.716228 TGTCACCATGATTTTAGAAATGGCT 59.284 36.000 0.00 0.00 42.83 4.75
100 101 6.889177 TGTCACCATGATTTTAGAAATGGCTA 59.111 34.615 0.00 0.00 42.83 3.93
101 102 7.067372 TGTCACCATGATTTTAGAAATGGCTAG 59.933 37.037 0.00 0.00 42.83 3.42
102 103 7.067494 GTCACCATGATTTTAGAAATGGCTAGT 59.933 37.037 0.00 0.00 42.83 2.57
103 104 7.615365 TCACCATGATTTTAGAAATGGCTAGTT 59.385 33.333 0.00 0.00 42.83 2.24
104 105 8.902806 CACCATGATTTTAGAAATGGCTAGTTA 58.097 33.333 0.00 0.00 42.83 2.24
105 106 9.646522 ACCATGATTTTAGAAATGGCTAGTTAT 57.353 29.630 0.00 0.00 42.83 1.89
136 137 7.412627 AGTAGTATAAGGCTAAGAGATACCCC 58.587 42.308 0.00 0.00 0.00 4.95
137 138 6.228977 AGTATAAGGCTAAGAGATACCCCA 57.771 41.667 0.00 0.00 0.00 4.96
138 139 6.816960 AGTATAAGGCTAAGAGATACCCCAT 58.183 40.000 0.00 0.00 0.00 4.00
139 140 7.257146 AGTATAAGGCTAAGAGATACCCCATT 58.743 38.462 0.00 0.00 0.00 3.16
140 141 4.713792 AAGGCTAAGAGATACCCCATTG 57.286 45.455 0.00 0.00 0.00 2.82
141 142 3.669949 AGGCTAAGAGATACCCCATTGT 58.330 45.455 0.00 0.00 0.00 2.71
142 143 4.827789 AGGCTAAGAGATACCCCATTGTA 58.172 43.478 0.00 0.00 0.00 2.41
143 144 5.415961 AGGCTAAGAGATACCCCATTGTAT 58.584 41.667 0.00 0.00 34.18 2.29
144 145 6.571624 AGGCTAAGAGATACCCCATTGTATA 58.428 40.000 0.00 0.00 31.67 1.47
145 146 6.440965 AGGCTAAGAGATACCCCATTGTATAC 59.559 42.308 0.00 0.00 31.67 1.47
146 147 6.212791 GGCTAAGAGATACCCCATTGTATACA 59.787 42.308 0.08 0.08 31.67 2.29
147 148 7.092846 GGCTAAGAGATACCCCATTGTATACAT 60.093 40.741 6.36 0.00 31.67 2.29
148 149 7.766278 GCTAAGAGATACCCCATTGTATACATG 59.234 40.741 6.36 7.27 31.67 3.21
149 150 7.633018 AAGAGATACCCCATTGTATACATGT 57.367 36.000 6.36 2.69 31.67 3.21
150 151 7.633018 AGAGATACCCCATTGTATACATGTT 57.367 36.000 2.30 0.00 31.67 2.71
151 152 8.045720 AGAGATACCCCATTGTATACATGTTT 57.954 34.615 2.30 0.00 31.67 2.83
152 153 8.502738 AGAGATACCCCATTGTATACATGTTTT 58.497 33.333 2.30 0.00 31.67 2.43
153 154 9.787435 GAGATACCCCATTGTATACATGTTTTA 57.213 33.333 2.30 0.00 31.67 1.52
157 158 8.602472 ACCCCATTGTATACATGTTTTATTGT 57.398 30.769 2.30 0.00 0.00 2.71
158 159 8.691797 ACCCCATTGTATACATGTTTTATTGTC 58.308 33.333 2.30 0.00 0.00 3.18
159 160 8.690884 CCCCATTGTATACATGTTTTATTGTCA 58.309 33.333 2.30 0.00 0.00 3.58
180 181 9.979578 TTGTCATCTTTAAATTACATGCAAAGT 57.020 25.926 0.00 0.00 0.00 2.66
181 182 9.624697 TGTCATCTTTAAATTACATGCAAAGTC 57.375 29.630 0.00 0.00 0.00 3.01
182 183 8.788813 GTCATCTTTAAATTACATGCAAAGTCG 58.211 33.333 0.00 0.00 0.00 4.18
183 184 7.967854 TCATCTTTAAATTACATGCAAAGTCGG 59.032 33.333 0.00 0.00 0.00 4.79
184 185 7.209471 TCTTTAAATTACATGCAAAGTCGGT 57.791 32.000 0.00 0.00 0.00 4.69
185 186 7.653647 TCTTTAAATTACATGCAAAGTCGGTT 58.346 30.769 0.00 0.00 0.00 4.44
186 187 8.138712 TCTTTAAATTACATGCAAAGTCGGTTT 58.861 29.630 0.00 0.00 0.00 3.27
187 188 8.649973 TTTAAATTACATGCAAAGTCGGTTTT 57.350 26.923 0.00 0.00 0.00 2.43
188 189 6.523676 AAATTACATGCAAAGTCGGTTTTG 57.476 33.333 0.00 7.81 40.25 2.44
189 190 2.507339 ACATGCAAAGTCGGTTTTGG 57.493 45.000 12.35 2.10 38.25 3.28
190 191 1.068434 ACATGCAAAGTCGGTTTTGGG 59.932 47.619 12.35 0.00 38.25 4.12
191 192 0.033366 ATGCAAAGTCGGTTTTGGGC 59.967 50.000 12.35 0.00 38.25 5.36
192 193 1.040339 TGCAAAGTCGGTTTTGGGCT 61.040 50.000 12.35 0.00 38.25 5.19
193 194 0.104120 GCAAAGTCGGTTTTGGGCTT 59.896 50.000 12.35 0.00 38.25 4.35
194 195 1.472552 GCAAAGTCGGTTTTGGGCTTT 60.473 47.619 12.35 0.00 38.25 3.51
195 196 2.223852 GCAAAGTCGGTTTTGGGCTTTA 60.224 45.455 12.35 0.00 38.25 1.85
196 197 3.554129 GCAAAGTCGGTTTTGGGCTTTAT 60.554 43.478 12.35 0.00 38.25 1.40
197 198 4.234574 CAAAGTCGGTTTTGGGCTTTATC 58.765 43.478 5.09 0.00 35.03 1.75
198 199 2.443416 AGTCGGTTTTGGGCTTTATCC 58.557 47.619 0.00 0.00 0.00 2.59
199 200 1.475280 GTCGGTTTTGGGCTTTATCCC 59.525 52.381 0.00 0.00 46.73 3.85
208 209 3.671008 GGGCTTTATCCCGTTTGTTTT 57.329 42.857 0.00 0.00 36.38 2.43
209 210 3.322369 GGGCTTTATCCCGTTTGTTTTG 58.678 45.455 0.00 0.00 36.38 2.44
210 211 3.243941 GGGCTTTATCCCGTTTGTTTTGT 60.244 43.478 0.00 0.00 36.38 2.83
211 212 3.985279 GGCTTTATCCCGTTTGTTTTGTC 59.015 43.478 0.00 0.00 0.00 3.18
212 213 3.985279 GCTTTATCCCGTTTGTTTTGTCC 59.015 43.478 0.00 0.00 0.00 4.02
213 214 4.552355 CTTTATCCCGTTTGTTTTGTCCC 58.448 43.478 0.00 0.00 0.00 4.46
214 215 0.955905 ATCCCGTTTGTTTTGTCCCG 59.044 50.000 0.00 0.00 0.00 5.14
215 216 1.102222 TCCCGTTTGTTTTGTCCCGG 61.102 55.000 0.00 0.00 35.32 5.73
216 217 1.385756 CCCGTTTGTTTTGTCCCGGT 61.386 55.000 0.00 0.00 33.77 5.28
217 218 0.456628 CCGTTTGTTTTGTCCCGGTT 59.543 50.000 0.00 0.00 0.00 4.44
218 219 1.534385 CCGTTTGTTTTGTCCCGGTTC 60.534 52.381 0.00 0.00 0.00 3.62
219 220 1.534385 CGTTTGTTTTGTCCCGGTTCC 60.534 52.381 0.00 0.00 0.00 3.62
220 221 1.477295 GTTTGTTTTGTCCCGGTTCCA 59.523 47.619 0.00 0.00 0.00 3.53
221 222 1.394618 TTGTTTTGTCCCGGTTCCAG 58.605 50.000 0.00 0.00 0.00 3.86
222 223 0.547075 TGTTTTGTCCCGGTTCCAGA 59.453 50.000 0.00 0.00 0.00 3.86
223 224 1.064611 TGTTTTGTCCCGGTTCCAGAA 60.065 47.619 0.00 0.00 0.00 3.02
224 225 1.335810 GTTTTGTCCCGGTTCCAGAAC 59.664 52.381 0.00 1.77 40.45 3.01
235 236 3.729862 GTTCCAGAACCGGGACTATAG 57.270 52.381 6.32 0.00 35.36 1.31
236 237 2.364647 GTTCCAGAACCGGGACTATAGG 59.635 54.545 6.32 2.64 35.36 2.57
237 238 0.680061 CCAGAACCGGGACTATAGGC 59.320 60.000 6.32 0.00 0.00 3.93
238 239 0.680061 CAGAACCGGGACTATAGGCC 59.320 60.000 17.25 17.25 0.00 5.19
239 240 0.471401 AGAACCGGGACTATAGGCCC 60.471 60.000 31.77 31.77 41.11 5.80
240 241 0.471401 GAACCGGGACTATAGGCCCT 60.471 60.000 36.19 21.66 42.40 5.19
241 242 0.471401 AACCGGGACTATAGGCCCTC 60.471 60.000 36.19 15.63 42.40 4.30
242 243 1.369855 ACCGGGACTATAGGCCCTCT 61.370 60.000 36.19 20.89 42.40 3.69
243 244 0.702902 CCGGGACTATAGGCCCTCTA 59.297 60.000 36.19 0.00 42.40 2.43
244 245 1.076677 CCGGGACTATAGGCCCTCTAA 59.923 57.143 36.19 0.00 42.40 2.10
245 246 2.492196 CCGGGACTATAGGCCCTCTAAA 60.492 54.545 36.19 0.00 42.40 1.85
246 247 3.236896 CGGGACTATAGGCCCTCTAAAA 58.763 50.000 36.19 0.00 42.40 1.52
247 248 3.006644 CGGGACTATAGGCCCTCTAAAAC 59.993 52.174 36.19 12.07 42.40 2.43
248 249 4.232909 GGGACTATAGGCCCTCTAAAACT 58.767 47.826 33.73 0.00 41.31 2.66
249 250 4.040584 GGGACTATAGGCCCTCTAAAACTG 59.959 50.000 33.73 0.00 41.31 3.16
250 251 4.040584 GGACTATAGGCCCTCTAAAACTGG 59.959 50.000 14.46 0.00 0.00 4.00
251 252 3.974642 ACTATAGGCCCTCTAAAACTGGG 59.025 47.826 0.00 0.00 43.62 4.45
252 253 2.653543 TAGGCCCTCTAAAACTGGGA 57.346 50.000 0.00 0.00 43.47 4.37
253 254 3.571748 GGCCCTCTAAAACTGGGAC 57.428 57.895 0.91 0.00 43.47 4.46
254 255 0.992695 GGCCCTCTAAAACTGGGACT 59.007 55.000 0.91 0.00 45.47 3.85
255 256 2.193993 GGCCCTCTAAAACTGGGACTA 58.806 52.381 0.91 0.00 45.47 2.59
256 257 2.170817 GGCCCTCTAAAACTGGGACTAG 59.829 54.545 0.91 0.00 45.47 2.57
257 258 2.838813 GCCCTCTAAAACTGGGACTAGT 59.161 50.000 0.00 0.00 43.47 2.57
258 259 4.028825 GCCCTCTAAAACTGGGACTAGTA 58.971 47.826 0.00 0.00 43.47 1.82
259 260 4.141981 GCCCTCTAAAACTGGGACTAGTAC 60.142 50.000 0.00 0.00 43.47 2.73
260 261 4.405036 CCCTCTAAAACTGGGACTAGTACC 59.595 50.000 18.19 18.19 43.47 3.34
261 262 4.405036 CCTCTAAAACTGGGACTAGTACCC 59.595 50.000 22.05 19.94 46.87 3.69
262 263 5.270794 CTCTAAAACTGGGACTAGTACCCT 58.729 45.833 22.05 3.46 46.82 4.34
263 264 5.021458 TCTAAAACTGGGACTAGTACCCTG 58.979 45.833 22.05 23.01 46.82 4.45
268 269 4.203654 CTGGGACTAGTACCCTGTTTTC 57.796 50.000 22.05 0.00 46.82 2.29
269 270 2.908351 TGGGACTAGTACCCTGTTTTCC 59.092 50.000 22.05 1.41 46.82 3.13
270 271 2.908351 GGGACTAGTACCCTGTTTTCCA 59.092 50.000 13.90 0.00 43.65 3.53
271 272 3.307269 GGGACTAGTACCCTGTTTTCCAC 60.307 52.174 13.90 0.00 43.65 4.02
272 273 3.581770 GGACTAGTACCCTGTTTTCCACT 59.418 47.826 0.00 0.00 0.00 4.00
273 274 4.774200 GGACTAGTACCCTGTTTTCCACTA 59.226 45.833 0.00 0.00 0.00 2.74
274 275 5.105432 GGACTAGTACCCTGTTTTCCACTAG 60.105 48.000 0.00 0.00 40.69 2.57
275 276 5.400870 ACTAGTACCCTGTTTTCCACTAGT 58.599 41.667 0.00 6.43 42.22 2.57
276 277 4.618920 AGTACCCTGTTTTCCACTAGTG 57.381 45.455 16.34 16.34 0.00 2.74
277 278 3.971971 AGTACCCTGTTTTCCACTAGTGT 59.028 43.478 21.18 1.55 0.00 3.55
278 279 3.208747 ACCCTGTTTTCCACTAGTGTG 57.791 47.619 21.18 12.69 43.45 3.82
279 280 2.508300 ACCCTGTTTTCCACTAGTGTGT 59.492 45.455 21.18 2.14 42.34 3.72
280 281 3.139077 CCCTGTTTTCCACTAGTGTGTC 58.861 50.000 21.18 7.74 42.34 3.67
281 282 3.433031 CCCTGTTTTCCACTAGTGTGTCA 60.433 47.826 21.18 11.38 42.34 3.58
282 283 3.809832 CCTGTTTTCCACTAGTGTGTCAG 59.190 47.826 21.18 18.29 42.34 3.51
283 284 3.804036 TGTTTTCCACTAGTGTGTCAGG 58.196 45.455 21.18 5.25 42.34 3.86
284 285 2.543777 TTTCCACTAGTGTGTCAGGC 57.456 50.000 21.18 0.00 42.34 4.85
285 286 1.717032 TTCCACTAGTGTGTCAGGCT 58.283 50.000 21.18 0.00 42.34 4.58
286 287 1.257743 TCCACTAGTGTGTCAGGCTC 58.742 55.000 21.18 0.00 42.34 4.70
287 288 0.109086 CCACTAGTGTGTCAGGCTCG 60.109 60.000 21.18 0.00 42.34 5.03
288 289 0.109086 CACTAGTGTGTCAGGCTCGG 60.109 60.000 15.06 0.00 39.24 4.63
289 290 1.153745 CTAGTGTGTCAGGCTCGGC 60.154 63.158 0.00 0.00 0.00 5.54
290 291 2.874010 CTAGTGTGTCAGGCTCGGCG 62.874 65.000 0.00 0.00 0.00 6.46
315 316 3.499737 GCACAAGGCGATGGGACG 61.500 66.667 0.00 0.00 0.00 4.79
323 324 2.880879 CGATGGGACGCACACGAG 60.881 66.667 13.01 0.00 43.93 4.18
324 325 2.509336 GATGGGACGCACACGAGG 60.509 66.667 0.00 0.00 43.93 4.63
325 326 4.082523 ATGGGACGCACACGAGGG 62.083 66.667 0.00 0.00 43.93 4.30
327 328 4.736896 GGGACGCACACGAGGGTC 62.737 72.222 13.05 13.05 46.97 4.46
333 334 4.742201 CACACGAGGGTCGGCAGG 62.742 72.222 0.86 0.00 45.59 4.85
356 357 3.903783 GCGCAAGGTGAGGCATAA 58.096 55.556 0.30 0.00 38.28 1.90
357 358 1.723870 GCGCAAGGTGAGGCATAAG 59.276 57.895 0.30 0.00 38.28 1.73
358 359 1.718757 GCGCAAGGTGAGGCATAAGG 61.719 60.000 0.30 0.00 38.28 2.69
359 360 0.392998 CGCAAGGTGAGGCATAAGGT 60.393 55.000 0.00 0.00 0.00 3.50
360 361 1.839424 GCAAGGTGAGGCATAAGGTT 58.161 50.000 0.00 0.00 0.00 3.50
361 362 1.474077 GCAAGGTGAGGCATAAGGTTG 59.526 52.381 0.00 0.00 0.00 3.77
362 363 1.474077 CAAGGTGAGGCATAAGGTTGC 59.526 52.381 0.00 0.00 42.01 4.17
363 364 0.392998 AGGTGAGGCATAAGGTTGCG 60.393 55.000 0.00 0.00 43.71 4.85
364 365 1.429423 GTGAGGCATAAGGTTGCGC 59.571 57.895 0.00 0.00 43.71 6.09
365 366 1.002746 TGAGGCATAAGGTTGCGCA 60.003 52.632 5.66 5.66 43.71 6.09
366 367 1.305219 TGAGGCATAAGGTTGCGCAC 61.305 55.000 11.12 5.37 43.71 5.34
367 368 1.303236 AGGCATAAGGTTGCGCACA 60.303 52.632 11.12 0.00 43.71 4.57
368 369 0.893270 AGGCATAAGGTTGCGCACAA 60.893 50.000 11.12 0.00 43.71 3.33
369 370 0.456653 GGCATAAGGTTGCGCACAAG 60.457 55.000 11.12 0.00 43.71 3.16
377 378 2.894879 TGCGCACAAGCAACTCGT 60.895 55.556 5.66 0.00 45.06 4.18
378 379 2.425773 GCGCACAAGCAACTCGTG 60.426 61.111 0.30 0.00 42.27 4.35
379 380 3.014036 CGCACAAGCAACTCGTGT 58.986 55.556 0.00 0.00 42.27 4.49
382 383 1.009675 CACAAGCAACTCGTGTGGC 60.010 57.895 8.97 8.97 46.71 5.01
386 387 3.712881 GCAACTCGTGTGGCGTCC 61.713 66.667 0.47 0.00 42.13 4.79
387 388 3.041940 CAACTCGTGTGGCGTCCC 61.042 66.667 0.00 0.00 42.13 4.46
388 389 4.309950 AACTCGTGTGGCGTCCCC 62.310 66.667 0.00 0.00 42.13 4.81
390 391 4.436998 CTCGTGTGGCGTCCCCTC 62.437 72.222 0.00 0.00 42.13 4.30
392 393 4.082523 CGTGTGGCGTCCCCTCAT 62.083 66.667 0.00 0.00 39.16 2.90
393 394 2.717044 CGTGTGGCGTCCCCTCATA 61.717 63.158 0.00 0.00 39.16 2.15
394 395 1.600107 GTGTGGCGTCCCCTCATAA 59.400 57.895 0.00 0.00 39.16 1.90
395 396 0.462047 GTGTGGCGTCCCCTCATAAG 60.462 60.000 0.00 0.00 39.16 1.73
396 397 1.523938 GTGGCGTCCCCTCATAAGC 60.524 63.158 0.00 0.00 0.00 3.09
397 398 1.992834 TGGCGTCCCCTCATAAGCA 60.993 57.895 0.00 0.00 0.00 3.91
398 399 1.523938 GGCGTCCCCTCATAAGCAC 60.524 63.158 0.00 0.00 0.00 4.40
399 400 1.883084 GCGTCCCCTCATAAGCACG 60.883 63.158 0.00 0.00 0.00 5.34
400 401 1.813859 CGTCCCCTCATAAGCACGA 59.186 57.895 0.00 0.00 0.00 4.35
401 402 0.174845 CGTCCCCTCATAAGCACGAA 59.825 55.000 0.00 0.00 0.00 3.85
402 403 1.802880 CGTCCCCTCATAAGCACGAAG 60.803 57.143 0.00 0.00 0.00 3.79
403 404 0.830648 TCCCCTCATAAGCACGAAGG 59.169 55.000 0.00 0.00 0.00 3.46
404 405 0.830648 CCCCTCATAAGCACGAAGGA 59.169 55.000 0.00 0.00 0.00 3.36
405 406 1.417890 CCCCTCATAAGCACGAAGGAT 59.582 52.381 0.00 0.00 0.00 3.24
406 407 2.548920 CCCCTCATAAGCACGAAGGATC 60.549 54.545 0.00 0.00 0.00 3.36
407 408 2.103094 CCCTCATAAGCACGAAGGATCA 59.897 50.000 0.00 0.00 0.00 2.92
408 409 3.244353 CCCTCATAAGCACGAAGGATCAT 60.244 47.826 0.00 0.00 0.00 2.45
409 410 3.993081 CCTCATAAGCACGAAGGATCATC 59.007 47.826 0.00 0.00 0.00 2.92
410 411 4.502087 CCTCATAAGCACGAAGGATCATCA 60.502 45.833 0.00 0.00 0.00 3.07
411 412 5.022282 TCATAAGCACGAAGGATCATCAA 57.978 39.130 0.00 0.00 0.00 2.57
412 413 5.614308 TCATAAGCACGAAGGATCATCAAT 58.386 37.500 0.00 0.00 0.00 2.57
413 414 5.467735 TCATAAGCACGAAGGATCATCAATG 59.532 40.000 0.00 0.00 0.00 2.82
414 415 3.548745 AGCACGAAGGATCATCAATGA 57.451 42.857 0.00 0.00 41.70 2.57
415 416 3.201290 AGCACGAAGGATCATCAATGAC 58.799 45.455 0.00 0.00 40.03 3.06
416 417 2.289002 GCACGAAGGATCATCAATGACC 59.711 50.000 0.00 0.01 40.03 4.02
417 418 3.534554 CACGAAGGATCATCAATGACCA 58.465 45.455 0.00 0.00 40.03 4.02
418 419 3.940852 CACGAAGGATCATCAATGACCAA 59.059 43.478 0.00 0.00 40.03 3.67
419 420 3.941483 ACGAAGGATCATCAATGACCAAC 59.059 43.478 0.00 6.36 40.03 3.77
420 421 4.194640 CGAAGGATCATCAATGACCAACT 58.805 43.478 0.00 0.54 40.03 3.16
421 422 4.637534 CGAAGGATCATCAATGACCAACTT 59.362 41.667 0.00 7.00 40.03 2.66
422 423 5.817296 CGAAGGATCATCAATGACCAACTTA 59.183 40.000 0.00 0.00 40.03 2.24
423 424 6.238211 CGAAGGATCATCAATGACCAACTTAC 60.238 42.308 0.00 0.00 40.03 2.34
424 425 6.065976 AGGATCATCAATGACCAACTTACA 57.934 37.500 0.00 0.00 40.03 2.41
425 426 5.882557 AGGATCATCAATGACCAACTTACAC 59.117 40.000 0.00 0.00 40.03 2.90
426 427 5.066505 GGATCATCAATGACCAACTTACACC 59.933 44.000 0.00 0.00 40.03 4.16
427 428 4.331968 TCATCAATGACCAACTTACACCC 58.668 43.478 0.00 0.00 0.00 4.61
428 429 3.149005 TCAATGACCAACTTACACCCC 57.851 47.619 0.00 0.00 0.00 4.95
429 430 2.167662 CAATGACCAACTTACACCCCC 58.832 52.381 0.00 0.00 0.00 5.40
492 493 5.379187 AGTATTTGATGGTGCAGATATGCA 58.621 37.500 11.76 11.76 43.22 3.96
503 505 4.572909 TGCAGATATGCATAGTCCACATC 58.427 43.478 11.76 4.00 40.23 3.06
544 546 6.323225 ACGTATTAGTACTCCAGTTATTGCCT 59.677 38.462 0.00 0.00 0.00 4.75
562 564 1.064505 CCTATTGCCGTCACAATGCAG 59.935 52.381 0.00 0.00 40.43 4.41
579 581 1.097547 CAGCGGAACAATGCCCCTAG 61.098 60.000 0.00 0.00 0.00 3.02
583 585 1.134220 CGGAACAATGCCCCTAGCTAA 60.134 52.381 0.00 0.00 44.23 3.09
584 586 2.298610 GGAACAATGCCCCTAGCTAAC 58.701 52.381 0.00 0.00 44.23 2.34
585 587 2.356741 GGAACAATGCCCCTAGCTAACA 60.357 50.000 0.00 0.00 44.23 2.41
586 588 2.717639 ACAATGCCCCTAGCTAACAG 57.282 50.000 0.00 0.00 44.23 3.16
663 669 2.373169 TCACCTGTCCTTTCTGCAATCT 59.627 45.455 0.00 0.00 0.00 2.40
688 698 3.582780 GAGCCAGAAAATTCCTGCAAAG 58.417 45.455 7.11 0.00 0.00 2.77
764 774 5.892568 ACGACGATTCTACAGATAAAAGCT 58.107 37.500 0.00 0.00 0.00 3.74
871 892 0.550914 ACCAAGCCACTTCAGGTTCA 59.449 50.000 0.00 0.00 0.00 3.18
971 995 8.073467 ACTCAATTTTTAGTTTCTTTCCCACA 57.927 30.769 0.00 0.00 0.00 4.17
978 1002 3.756117 AGTTTCTTTCCCACACAGATCC 58.244 45.455 0.00 0.00 0.00 3.36
979 1003 3.138283 AGTTTCTTTCCCACACAGATCCA 59.862 43.478 0.00 0.00 0.00 3.41
980 1004 2.859165 TCTTTCCCACACAGATCCAC 57.141 50.000 0.00 0.00 0.00 4.02
1038 1062 3.260884 TCCTTGTGTTCATCCTACTGGTC 59.739 47.826 0.00 0.00 34.23 4.02
1128 1152 2.338015 GGTGACGCAGACGGAGGTA 61.338 63.158 0.00 0.00 46.04 3.08
1257 1289 5.600898 TCGTGGATGAATGGAGAATTACCTA 59.399 40.000 3.39 0.00 0.00 3.08
1348 1384 6.652245 ACAGTAAAAAGGTCGTGTATTTTCG 58.348 36.000 0.00 0.00 0.00 3.46
1350 1386 7.011295 ACAGTAAAAAGGTCGTGTATTTTCGAA 59.989 33.333 0.00 0.00 37.81 3.71
1400 1436 8.582930 CGTTTGTAATCAATTGAAATAACGCAT 58.417 29.630 13.09 0.00 33.32 4.73
1414 1450 7.328005 TGAAATAACGCATAGTGTTAACGTGTA 59.672 33.333 7.18 0.00 40.95 2.90
1424 1460 9.031360 CATAGTGTTAACGTGTAATATTGCTCT 57.969 33.333 5.11 0.00 0.00 4.09
1467 1503 6.806668 TGGTCACTTCTTACCATATGATGA 57.193 37.500 3.65 0.00 40.84 2.92
1473 1509 9.383519 TCACTTCTTACCATATGATGAACTTTC 57.616 33.333 3.65 0.00 0.00 2.62
1479 1515 5.261216 ACCATATGATGAACTTTCGGGTTT 58.739 37.500 3.65 0.00 0.00 3.27
1541 1577 9.139174 CAACTTACAAACACATCAGAAAGTTTT 57.861 29.630 0.00 0.00 34.61 2.43
1566 1602 2.025155 GTGGTCGGATAGCTCAAGAGA 58.975 52.381 0.32 0.00 0.00 3.10
1567 1603 2.427453 GTGGTCGGATAGCTCAAGAGAA 59.573 50.000 0.32 0.00 0.00 2.87
1577 1614 4.031636 AGCTCAAGAGAAGGATTTGCTT 57.968 40.909 0.32 0.00 0.00 3.91
1605 1642 4.537751 ACGATGGAGAGATGTTCTTAGGA 58.462 43.478 0.00 0.00 35.87 2.94
1660 1697 3.006967 GGTCAGACACAGGTGACTACATT 59.993 47.826 6.40 0.00 42.37 2.71
1671 1708 3.043586 GTGACTACATTACGAGGATGCG 58.956 50.000 0.00 0.00 37.29 4.73
1687 1724 3.057174 GGATGCGGGAACACAATAACAAA 60.057 43.478 0.00 0.00 0.00 2.83
1762 1803 5.833667 TGACTCAGGAGGATAACGATACATT 59.166 40.000 0.83 0.00 0.00 2.71
1767 1808 5.243954 CAGGAGGATAACGATACATTCTGGA 59.756 44.000 0.00 0.00 0.00 3.86
1777 1819 6.406370 ACGATACATTCTGGATTTTGTGAGA 58.594 36.000 0.00 0.00 0.00 3.27
1800 1842 3.273434 TCATGAAGCAAAGGGAAGATCG 58.727 45.455 0.00 0.00 0.00 3.69
2091 2143 6.928348 TCAGTGAATATCGGGTAATACCAT 57.072 37.500 12.03 0.00 41.02 3.55
2092 2144 8.425237 TTCAGTGAATATCGGGTAATACCATA 57.575 34.615 12.03 2.03 41.02 2.74
2093 2145 8.063200 TCAGTGAATATCGGGTAATACCATAG 57.937 38.462 12.03 2.34 41.02 2.23
2094 2146 7.672660 TCAGTGAATATCGGGTAATACCATAGT 59.327 37.037 12.03 0.81 41.02 2.12
2095 2147 8.311836 CAGTGAATATCGGGTAATACCATAGTT 58.688 37.037 12.03 0.00 41.02 2.24
2096 2148 8.877195 AGTGAATATCGGGTAATACCATAGTTT 58.123 33.333 12.03 0.00 41.02 2.66
2097 2149 9.498176 GTGAATATCGGGTAATACCATAGTTTT 57.502 33.333 12.03 0.00 41.02 2.43
2104 2156 9.492973 TCGGGTAATACCATAGTTTTAAATAGC 57.507 33.333 12.03 0.00 41.02 2.97
2105 2157 8.437742 CGGGTAATACCATAGTTTTAAATAGCG 58.562 37.037 12.03 0.00 41.02 4.26
2106 2158 8.232513 GGGTAATACCATAGTTTTAAATAGCGC 58.767 37.037 12.03 0.00 41.02 5.92
2107 2159 7.953710 GGTAATACCATAGTTTTAAATAGCGCG 59.046 37.037 0.00 0.00 38.42 6.86
2108 2160 4.205323 ACCATAGTTTTAAATAGCGCGC 57.795 40.909 26.66 26.66 0.00 6.86
2109 2161 3.875134 ACCATAGTTTTAAATAGCGCGCT 59.125 39.130 38.01 38.01 0.00 5.92
2110 2162 5.051816 ACCATAGTTTTAAATAGCGCGCTA 58.948 37.500 39.72 39.72 0.00 4.26
2111 2163 5.524646 ACCATAGTTTTAAATAGCGCGCTAA 59.475 36.000 40.90 26.03 31.73 3.09
2112 2164 6.071463 CCATAGTTTTAAATAGCGCGCTAAG 58.929 40.000 40.90 15.88 31.73 2.18
2113 2165 3.936661 AGTTTTAAATAGCGCGCTAAGC 58.063 40.909 40.90 27.92 43.95 3.09
2125 2177 1.856012 GCTAAGCATCTTAGCGGCG 59.144 57.895 18.95 0.51 38.12 6.46
2126 2178 1.560860 GCTAAGCATCTTAGCGGCGG 61.561 60.000 18.95 0.00 38.12 6.13
2127 2179 0.032130 CTAAGCATCTTAGCGGCGGA 59.968 55.000 9.78 0.00 40.15 5.54
2128 2180 0.249322 TAAGCATCTTAGCGGCGGAC 60.249 55.000 9.78 0.00 40.15 4.79
2129 2181 2.925162 AAGCATCTTAGCGGCGGACC 62.925 60.000 9.78 0.00 40.15 4.46
2130 2182 2.815308 CATCTTAGCGGCGGACCT 59.185 61.111 9.78 0.00 0.00 3.85
2131 2183 1.300233 CATCTTAGCGGCGGACCTC 60.300 63.158 9.78 0.00 0.00 3.85
2132 2184 1.455959 ATCTTAGCGGCGGACCTCT 60.456 57.895 9.78 0.00 34.60 3.69
2133 2185 1.043673 ATCTTAGCGGCGGACCTCTT 61.044 55.000 9.78 0.00 31.87 2.85
2134 2186 1.227002 CTTAGCGGCGGACCTCTTC 60.227 63.158 9.78 0.00 31.87 2.87
2135 2187 2.630592 CTTAGCGGCGGACCTCTTCC 62.631 65.000 9.78 0.00 41.75 3.46
2136 2188 3.949885 TAGCGGCGGACCTCTTCCA 62.950 63.158 9.78 0.00 46.29 3.53
2137 2189 4.162690 GCGGCGGACCTCTTCCAT 62.163 66.667 9.78 0.00 46.29 3.41
2138 2190 2.792947 GCGGCGGACCTCTTCCATA 61.793 63.158 9.78 0.00 46.29 2.74
2139 2191 2.050269 CGGCGGACCTCTTCCATAT 58.950 57.895 0.00 0.00 46.29 1.78
2140 2192 0.319900 CGGCGGACCTCTTCCATATG 60.320 60.000 0.00 0.00 46.29 1.78
2141 2193 0.603975 GGCGGACCTCTTCCATATGC 60.604 60.000 0.00 0.00 46.29 3.14
2142 2194 0.394565 GCGGACCTCTTCCATATGCT 59.605 55.000 0.00 0.00 46.29 3.79
2143 2195 1.618837 GCGGACCTCTTCCATATGCTA 59.381 52.381 0.00 0.00 46.29 3.49
2144 2196 2.234908 GCGGACCTCTTCCATATGCTAT 59.765 50.000 0.00 0.00 46.29 2.97
2145 2197 3.447586 GCGGACCTCTTCCATATGCTATA 59.552 47.826 0.00 0.00 46.29 1.31
2146 2198 4.440802 GCGGACCTCTTCCATATGCTATAG 60.441 50.000 0.00 0.00 46.29 1.31
2147 2199 4.440802 CGGACCTCTTCCATATGCTATAGC 60.441 50.000 18.18 18.18 46.29 2.97
2148 2200 4.440802 GGACCTCTTCCATATGCTATAGCG 60.441 50.000 19.55 5.29 45.10 4.26
2149 2201 4.090090 ACCTCTTCCATATGCTATAGCGT 58.910 43.478 22.53 22.53 45.83 5.07
2150 2202 4.081972 ACCTCTTCCATATGCTATAGCGTG 60.082 45.833 26.43 19.74 45.83 5.34
2151 2203 3.849911 TCTTCCATATGCTATAGCGTGC 58.150 45.455 26.43 2.18 45.83 5.34
2152 2204 3.511540 TCTTCCATATGCTATAGCGTGCT 59.488 43.478 26.43 12.72 45.83 4.40
2153 2205 4.705023 TCTTCCATATGCTATAGCGTGCTA 59.295 41.667 26.43 9.76 45.83 3.49
2154 2206 5.360999 TCTTCCATATGCTATAGCGTGCTAT 59.639 40.000 26.43 17.65 45.83 2.97
2155 2207 6.546034 TCTTCCATATGCTATAGCGTGCTATA 59.454 38.462 26.43 17.96 45.83 1.31
2161 2213 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
2162 2214 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
2184 2236 5.618561 GCTATAGCGCGCTATTTAAAATGT 58.381 37.500 46.76 28.88 39.65 2.71
2185 2237 6.077838 GCTATAGCGCGCTATTTAAAATGTT 58.922 36.000 46.76 28.22 39.65 2.71
2186 2238 6.577427 GCTATAGCGCGCTATTTAAAATGTTT 59.423 34.615 46.76 27.75 39.65 2.83
2187 2239 6.732181 ATAGCGCGCTATTTAAAATGTTTG 57.268 33.333 40.32 0.00 35.92 2.93
2188 2240 4.481463 AGCGCGCTATTTAAAATGTTTGT 58.519 34.783 35.79 0.63 0.00 2.83
2189 2241 4.920927 AGCGCGCTATTTAAAATGTTTGTT 59.079 33.333 35.79 0.18 0.00 2.83
2190 2242 5.060446 AGCGCGCTATTTAAAATGTTTGTTC 59.940 36.000 35.79 0.00 0.00 3.18
2191 2243 5.164138 GCGCGCTATTTAAAATGTTTGTTCA 60.164 36.000 26.67 0.00 0.00 3.18
2192 2244 6.453659 GCGCGCTATTTAAAATGTTTGTTCAT 60.454 34.615 26.67 0.00 0.00 2.57
2193 2245 7.444245 CGCGCTATTTAAAATGTTTGTTCATT 58.556 30.769 5.56 0.00 39.35 2.57
2194 2246 7.949428 CGCGCTATTTAAAATGTTTGTTCATTT 59.051 29.630 5.56 0.00 45.94 2.32
2195 2247 9.039500 GCGCTATTTAAAATGTTTGTTCATTTG 57.961 29.630 0.00 0.00 44.10 2.32
2203 2255 6.676237 AATGTTTGTTCATTTGTTTGGACC 57.324 33.333 0.00 0.00 34.86 4.46
2204 2256 5.152623 TGTTTGTTCATTTGTTTGGACCA 57.847 34.783 0.00 0.00 0.00 4.02
2205 2257 5.551233 TGTTTGTTCATTTGTTTGGACCAA 58.449 33.333 1.69 1.69 0.00 3.67
2206 2258 5.997746 TGTTTGTTCATTTGTTTGGACCAAA 59.002 32.000 15.89 15.89 36.34 3.28
2207 2259 6.148480 TGTTTGTTCATTTGTTTGGACCAAAG 59.852 34.615 20.14 8.25 35.45 2.77
2208 2260 5.413309 TGTTCATTTGTTTGGACCAAAGT 57.587 34.783 20.14 4.29 35.45 2.66
2209 2261 5.415221 TGTTCATTTGTTTGGACCAAAGTC 58.585 37.500 20.14 10.01 42.73 3.01
2210 2262 5.186797 TGTTCATTTGTTTGGACCAAAGTCT 59.813 36.000 20.14 2.95 43.05 3.24
2211 2263 5.514274 TCATTTGTTTGGACCAAAGTCTC 57.486 39.130 20.14 8.94 43.05 3.36
2212 2264 5.200483 TCATTTGTTTGGACCAAAGTCTCT 58.800 37.500 20.14 1.91 43.05 3.10
2213 2265 5.656416 TCATTTGTTTGGACCAAAGTCTCTT 59.344 36.000 20.14 1.05 43.05 2.85
2214 2266 6.831353 TCATTTGTTTGGACCAAAGTCTCTTA 59.169 34.615 20.14 1.24 43.05 2.10
2215 2267 6.693315 TTTGTTTGGACCAAAGTCTCTTAG 57.307 37.500 20.14 0.00 43.05 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.840651 TGGATTCTCTTTCCTCCACCTC 59.159 50.000 0.00 0.00 32.92 3.85
1 2 2.921221 TGGATTCTCTTTCCTCCACCT 58.079 47.619 0.00 0.00 32.92 4.00
2 3 3.941704 ATGGATTCTCTTTCCTCCACC 57.058 47.619 0.00 0.00 40.43 4.61
3 4 7.703058 TTTTTATGGATTCTCTTTCCTCCAC 57.297 36.000 0.00 0.00 40.43 4.02
45 46 9.652114 ATTGGGCTAAGAAATCATCTCTTAAAT 57.348 29.630 0.00 0.00 37.42 1.40
50 51 9.902684 CATATATTGGGCTAAGAAATCATCTCT 57.097 33.333 0.00 0.00 37.42 3.10
51 52 9.678260 ACATATATTGGGCTAAGAAATCATCTC 57.322 33.333 0.00 0.00 37.42 2.75
52 53 9.678260 GACATATATTGGGCTAAGAAATCATCT 57.322 33.333 0.00 0.00 41.32 2.90
53 54 9.453572 TGACATATATTGGGCTAAGAAATCATC 57.546 33.333 0.00 0.00 0.00 2.92
54 55 9.236006 GTGACATATATTGGGCTAAGAAATCAT 57.764 33.333 0.00 0.00 0.00 2.45
55 56 7.665559 GGTGACATATATTGGGCTAAGAAATCA 59.334 37.037 0.00 0.00 0.00 2.57
56 57 7.665559 TGGTGACATATATTGGGCTAAGAAATC 59.334 37.037 0.00 0.00 33.40 2.17
57 58 7.526041 TGGTGACATATATTGGGCTAAGAAAT 58.474 34.615 0.00 0.00 33.40 2.17
58 59 6.905736 TGGTGACATATATTGGGCTAAGAAA 58.094 36.000 0.00 0.00 33.40 2.52
59 60 6.508030 TGGTGACATATATTGGGCTAAGAA 57.492 37.500 0.00 0.00 33.40 2.52
76 77 6.212888 AGCCATTTCTAAAATCATGGTGAC 57.787 37.500 0.00 0.00 38.81 3.67
77 78 7.118723 ACTAGCCATTTCTAAAATCATGGTGA 58.881 34.615 0.00 0.00 38.81 4.02
78 79 7.338800 ACTAGCCATTTCTAAAATCATGGTG 57.661 36.000 0.00 0.00 38.81 4.17
79 80 7.961326 AACTAGCCATTTCTAAAATCATGGT 57.039 32.000 0.00 0.00 38.81 3.55
110 111 8.555729 GGGGTATCTCTTAGCCTTATACTACTA 58.444 40.741 1.35 0.00 46.01 1.82
111 112 7.019356 TGGGGTATCTCTTAGCCTTATACTACT 59.981 40.741 1.35 0.00 46.01 2.57
112 113 7.180663 TGGGGTATCTCTTAGCCTTATACTAC 58.819 42.308 1.35 0.00 46.01 2.73
113 114 7.352775 TGGGGTATCTCTTAGCCTTATACTA 57.647 40.000 1.35 0.00 46.01 1.82
114 115 6.228977 TGGGGTATCTCTTAGCCTTATACT 57.771 41.667 1.35 0.00 46.01 2.12
115 116 7.038231 ACAATGGGGTATCTCTTAGCCTTATAC 60.038 40.741 1.35 0.00 46.01 1.47
116 117 7.023120 ACAATGGGGTATCTCTTAGCCTTATA 58.977 38.462 1.35 0.00 46.01 0.98
117 118 5.852250 ACAATGGGGTATCTCTTAGCCTTAT 59.148 40.000 1.35 0.00 46.01 1.73
118 119 5.224441 ACAATGGGGTATCTCTTAGCCTTA 58.776 41.667 1.35 0.00 46.01 2.69
119 120 4.047883 ACAATGGGGTATCTCTTAGCCTT 58.952 43.478 1.35 0.00 46.01 4.35
120 121 3.669949 ACAATGGGGTATCTCTTAGCCT 58.330 45.455 1.35 0.00 46.01 4.58
121 122 5.763876 ATACAATGGGGTATCTCTTAGCC 57.236 43.478 0.00 0.00 46.03 3.93
122 123 7.241042 TGTATACAATGGGGTATCTCTTAGC 57.759 40.000 2.20 0.00 35.64 3.09
123 124 8.816894 ACATGTATACAATGGGGTATCTCTTAG 58.183 37.037 10.14 0.00 35.64 2.18
124 125 8.736097 ACATGTATACAATGGGGTATCTCTTA 57.264 34.615 10.14 0.00 35.64 2.10
125 126 7.633018 ACATGTATACAATGGGGTATCTCTT 57.367 36.000 10.14 0.00 35.64 2.85
126 127 7.633018 AACATGTATACAATGGGGTATCTCT 57.367 36.000 10.14 0.00 35.64 3.10
127 128 8.691661 AAAACATGTATACAATGGGGTATCTC 57.308 34.615 10.14 0.00 35.64 2.75
131 132 9.702253 ACAATAAAACATGTATACAATGGGGTA 57.298 29.630 10.14 0.00 0.00 3.69
132 133 8.602472 ACAATAAAACATGTATACAATGGGGT 57.398 30.769 10.14 1.08 0.00 4.95
133 134 8.690884 TGACAATAAAACATGTATACAATGGGG 58.309 33.333 10.14 0.47 0.00 4.96
154 155 9.979578 ACTTTGCATGTAATTTAAAGATGACAA 57.020 25.926 0.00 1.33 33.36 3.18
155 156 9.624697 GACTTTGCATGTAATTTAAAGATGACA 57.375 29.630 0.00 0.00 33.36 3.58
156 157 8.788813 CGACTTTGCATGTAATTTAAAGATGAC 58.211 33.333 0.00 0.00 33.36 3.06
157 158 7.967854 CCGACTTTGCATGTAATTTAAAGATGA 59.032 33.333 0.00 0.00 33.36 2.92
158 159 7.754924 ACCGACTTTGCATGTAATTTAAAGATG 59.245 33.333 0.00 0.00 33.36 2.90
159 160 7.826690 ACCGACTTTGCATGTAATTTAAAGAT 58.173 30.769 0.00 0.00 33.36 2.40
160 161 7.209471 ACCGACTTTGCATGTAATTTAAAGA 57.791 32.000 0.00 0.00 33.36 2.52
161 162 7.867445 AACCGACTTTGCATGTAATTTAAAG 57.133 32.000 0.00 0.00 34.56 1.85
162 163 8.543774 CAAAACCGACTTTGCATGTAATTTAAA 58.456 29.630 0.00 0.00 30.03 1.52
163 164 7.169982 CCAAAACCGACTTTGCATGTAATTTAA 59.830 33.333 0.00 0.00 35.38 1.52
164 165 6.642950 CCAAAACCGACTTTGCATGTAATTTA 59.357 34.615 0.00 0.00 35.38 1.40
165 166 5.465056 CCAAAACCGACTTTGCATGTAATTT 59.535 36.000 0.00 0.00 35.38 1.82
166 167 4.987912 CCAAAACCGACTTTGCATGTAATT 59.012 37.500 0.00 0.00 35.38 1.40
167 168 4.555262 CCAAAACCGACTTTGCATGTAAT 58.445 39.130 0.00 0.00 35.38 1.89
168 169 3.243569 CCCAAAACCGACTTTGCATGTAA 60.244 43.478 0.00 0.00 35.38 2.41
169 170 2.294791 CCCAAAACCGACTTTGCATGTA 59.705 45.455 0.00 0.00 35.38 2.29
170 171 1.068434 CCCAAAACCGACTTTGCATGT 59.932 47.619 0.00 0.00 35.38 3.21
171 172 1.782044 CCCAAAACCGACTTTGCATG 58.218 50.000 0.00 0.00 35.38 4.06
172 173 0.033366 GCCCAAAACCGACTTTGCAT 59.967 50.000 0.00 0.00 35.38 3.96
173 174 1.040339 AGCCCAAAACCGACTTTGCA 61.040 50.000 4.24 0.00 35.38 4.08
174 175 0.104120 AAGCCCAAAACCGACTTTGC 59.896 50.000 4.24 0.00 35.38 3.68
175 176 2.595124 AAAGCCCAAAACCGACTTTG 57.405 45.000 3.06 3.06 36.28 2.77
176 177 3.257375 GGATAAAGCCCAAAACCGACTTT 59.743 43.478 0.00 0.00 35.00 2.66
177 178 2.823747 GGATAAAGCCCAAAACCGACTT 59.176 45.455 0.00 0.00 0.00 3.01
178 179 2.443416 GGATAAAGCCCAAAACCGACT 58.557 47.619 0.00 0.00 0.00 4.18
179 180 2.933495 GGATAAAGCCCAAAACCGAC 57.067 50.000 0.00 0.00 0.00 4.79
188 189 3.243941 ACAAAACAAACGGGATAAAGCCC 60.244 43.478 0.00 0.00 45.10 5.19
189 190 3.985008 ACAAAACAAACGGGATAAAGCC 58.015 40.909 0.00 0.00 0.00 4.35
190 191 3.985279 GGACAAAACAAACGGGATAAAGC 59.015 43.478 0.00 0.00 0.00 3.51
191 192 4.552355 GGGACAAAACAAACGGGATAAAG 58.448 43.478 0.00 0.00 0.00 1.85
192 193 3.004524 CGGGACAAAACAAACGGGATAAA 59.995 43.478 0.00 0.00 0.00 1.40
193 194 2.553172 CGGGACAAAACAAACGGGATAA 59.447 45.455 0.00 0.00 0.00 1.75
194 195 2.152830 CGGGACAAAACAAACGGGATA 58.847 47.619 0.00 0.00 0.00 2.59
195 196 0.955905 CGGGACAAAACAAACGGGAT 59.044 50.000 0.00 0.00 0.00 3.85
196 197 1.102222 CCGGGACAAAACAAACGGGA 61.102 55.000 0.00 0.00 37.80 5.14
197 198 1.360911 CCGGGACAAAACAAACGGG 59.639 57.895 0.00 0.00 37.80 5.28
198 199 0.456628 AACCGGGACAAAACAAACGG 59.543 50.000 6.32 0.00 46.16 4.44
199 200 1.534385 GGAACCGGGACAAAACAAACG 60.534 52.381 6.32 0.00 0.00 3.60
200 201 1.477295 TGGAACCGGGACAAAACAAAC 59.523 47.619 6.32 0.00 0.00 2.93
201 202 1.751924 CTGGAACCGGGACAAAACAAA 59.248 47.619 6.32 0.00 0.00 2.83
202 203 1.064611 TCTGGAACCGGGACAAAACAA 60.065 47.619 6.32 0.00 0.00 2.83
203 204 0.547075 TCTGGAACCGGGACAAAACA 59.453 50.000 6.32 0.00 0.00 2.83
204 205 1.335810 GTTCTGGAACCGGGACAAAAC 59.664 52.381 6.32 0.71 35.36 2.43
205 206 1.682740 GTTCTGGAACCGGGACAAAA 58.317 50.000 6.32 0.00 35.36 2.44
206 207 3.407443 GTTCTGGAACCGGGACAAA 57.593 52.632 6.32 0.00 35.36 2.83
215 216 2.364647 CCTATAGTCCCGGTTCTGGAAC 59.635 54.545 0.00 5.02 40.45 3.62
216 217 2.674420 CCTATAGTCCCGGTTCTGGAA 58.326 52.381 0.00 0.00 32.59 3.53
217 218 1.756690 GCCTATAGTCCCGGTTCTGGA 60.757 57.143 0.00 0.00 0.00 3.86
218 219 0.680061 GCCTATAGTCCCGGTTCTGG 59.320 60.000 0.00 0.00 0.00 3.86
219 220 0.680061 GGCCTATAGTCCCGGTTCTG 59.320 60.000 0.00 0.00 0.00 3.02
220 221 0.471401 GGGCCTATAGTCCCGGTTCT 60.471 60.000 2.38 0.15 32.00 3.01
221 222 2.056141 GGGCCTATAGTCCCGGTTC 58.944 63.158 2.38 0.00 32.00 3.62
222 223 4.308061 GGGCCTATAGTCCCGGTT 57.692 61.111 2.38 0.00 32.00 4.44
226 227 4.040584 CAGTTTTAGAGGGCCTATAGTCCC 59.959 50.000 11.13 11.13 42.94 4.46
227 228 4.040584 CCAGTTTTAGAGGGCCTATAGTCC 59.959 50.000 5.73 0.00 0.00 3.85
228 229 4.040584 CCCAGTTTTAGAGGGCCTATAGTC 59.959 50.000 5.73 2.12 35.44 2.59
229 230 3.974642 CCCAGTTTTAGAGGGCCTATAGT 59.025 47.826 5.73 0.00 35.44 2.12
230 231 4.040584 GTCCCAGTTTTAGAGGGCCTATAG 59.959 50.000 5.73 0.00 42.52 1.31
231 232 3.971971 GTCCCAGTTTTAGAGGGCCTATA 59.028 47.826 5.73 4.31 42.52 1.31
232 233 2.778270 GTCCCAGTTTTAGAGGGCCTAT 59.222 50.000 5.73 5.73 42.52 2.57
233 234 2.193993 GTCCCAGTTTTAGAGGGCCTA 58.806 52.381 5.73 0.00 42.52 3.93
234 235 0.992695 GTCCCAGTTTTAGAGGGCCT 59.007 55.000 5.25 5.25 42.52 5.19
235 236 0.992695 AGTCCCAGTTTTAGAGGGCC 59.007 55.000 0.00 0.00 42.52 5.80
236 237 2.838813 ACTAGTCCCAGTTTTAGAGGGC 59.161 50.000 0.00 0.00 42.52 5.19
237 238 4.405036 GGTACTAGTCCCAGTTTTAGAGGG 59.595 50.000 0.00 0.00 44.22 4.30
238 239 4.405036 GGGTACTAGTCCCAGTTTTAGAGG 59.595 50.000 19.74 0.00 44.05 3.69
239 240 5.127356 CAGGGTACTAGTCCCAGTTTTAGAG 59.873 48.000 24.02 6.42 46.82 2.43
240 241 5.021458 CAGGGTACTAGTCCCAGTTTTAGA 58.979 45.833 24.02 0.00 46.82 2.10
241 242 4.776308 ACAGGGTACTAGTCCCAGTTTTAG 59.224 45.833 24.02 11.87 46.82 1.85
242 243 4.755437 ACAGGGTACTAGTCCCAGTTTTA 58.245 43.478 24.02 0.00 46.82 1.52
243 244 3.595021 ACAGGGTACTAGTCCCAGTTTT 58.405 45.455 24.02 7.76 46.82 2.43
244 245 3.271153 ACAGGGTACTAGTCCCAGTTT 57.729 47.619 24.02 8.04 46.82 2.66
245 246 3.271153 AACAGGGTACTAGTCCCAGTT 57.729 47.619 23.43 23.43 45.58 3.16
246 247 3.271153 AAACAGGGTACTAGTCCCAGT 57.729 47.619 24.02 20.61 46.82 4.00
247 248 3.055312 GGAAAACAGGGTACTAGTCCCAG 60.055 52.174 24.02 20.13 46.82 4.45
248 249 2.908351 GGAAAACAGGGTACTAGTCCCA 59.092 50.000 24.02 0.00 46.82 4.37
249 250 2.908351 TGGAAAACAGGGTACTAGTCCC 59.092 50.000 17.92 17.92 44.90 4.46
250 251 3.581770 AGTGGAAAACAGGGTACTAGTCC 59.418 47.826 0.00 0.27 0.00 3.85
251 252 4.886496 AGTGGAAAACAGGGTACTAGTC 57.114 45.455 0.00 0.00 0.00 2.59
252 253 5.245526 CACTAGTGGAAAACAGGGTACTAGT 59.754 44.000 15.49 0.00 46.86 2.57
253 254 5.245526 ACACTAGTGGAAAACAGGGTACTAG 59.754 44.000 26.12 0.00 41.88 2.57
254 255 5.011329 CACACTAGTGGAAAACAGGGTACTA 59.989 44.000 26.12 0.00 42.13 1.82
255 256 3.971971 ACACTAGTGGAAAACAGGGTACT 59.028 43.478 26.12 0.00 34.19 2.73
256 257 4.062991 CACACTAGTGGAAAACAGGGTAC 58.937 47.826 26.12 0.00 42.13 3.34
257 258 4.345859 CACACTAGTGGAAAACAGGGTA 57.654 45.455 26.12 0.00 42.13 3.69
258 259 3.208747 CACACTAGTGGAAAACAGGGT 57.791 47.619 26.12 0.00 42.13 4.34
270 271 1.878656 GCCGAGCCTGACACACTAGT 61.879 60.000 0.00 0.00 0.00 2.57
271 272 1.153745 GCCGAGCCTGACACACTAG 60.154 63.158 0.00 0.00 0.00 2.57
272 273 2.970639 GCCGAGCCTGACACACTA 59.029 61.111 0.00 0.00 0.00 2.74
273 274 4.363990 CGCCGAGCCTGACACACT 62.364 66.667 0.00 0.00 0.00 3.55
287 288 3.127533 CTTGTGCTACTGCCCGCC 61.128 66.667 0.00 0.00 38.71 6.13
288 289 3.127533 CCTTGTGCTACTGCCCGC 61.128 66.667 0.00 0.00 38.71 6.13
289 290 3.127533 GCCTTGTGCTACTGCCCG 61.128 66.667 0.00 0.00 38.71 6.13
290 291 2.876368 ATCGCCTTGTGCTACTGCCC 62.876 60.000 0.00 0.00 38.71 5.36
291 292 1.450312 ATCGCCTTGTGCTACTGCC 60.450 57.895 0.00 0.00 38.71 4.85
292 293 1.709147 CCATCGCCTTGTGCTACTGC 61.709 60.000 0.00 0.00 38.05 4.40
293 294 1.091771 CCCATCGCCTTGTGCTACTG 61.092 60.000 0.00 0.00 38.05 2.74
294 295 1.221840 CCCATCGCCTTGTGCTACT 59.778 57.895 0.00 0.00 38.05 2.57
295 296 1.090052 GTCCCATCGCCTTGTGCTAC 61.090 60.000 0.00 0.00 38.05 3.58
296 297 1.220749 GTCCCATCGCCTTGTGCTA 59.779 57.895 0.00 0.00 38.05 3.49
297 298 2.045926 GTCCCATCGCCTTGTGCT 60.046 61.111 0.00 0.00 38.05 4.40
298 299 3.499737 CGTCCCATCGCCTTGTGC 61.500 66.667 0.00 0.00 0.00 4.57
306 307 2.880879 CTCGTGTGCGTCCCATCG 60.881 66.667 0.00 0.00 39.49 3.84
307 308 2.509336 CCTCGTGTGCGTCCCATC 60.509 66.667 0.00 0.00 39.49 3.51
308 309 4.082523 CCCTCGTGTGCGTCCCAT 62.083 66.667 0.00 0.00 39.49 4.00
310 311 4.736896 GACCCTCGTGTGCGTCCC 62.737 72.222 0.00 0.00 39.49 4.46
316 317 4.742201 CCTGCCGACCCTCGTGTG 62.742 72.222 0.00 0.00 38.40 3.82
334 335 2.509336 CCTCACCTTGCGCTACCG 60.509 66.667 9.73 0.00 37.57 4.02
335 336 2.820037 GCCTCACCTTGCGCTACC 60.820 66.667 9.73 0.00 0.00 3.18
336 337 0.179084 TATGCCTCACCTTGCGCTAC 60.179 55.000 9.73 0.00 0.00 3.58
337 338 0.539518 TTATGCCTCACCTTGCGCTA 59.460 50.000 9.73 0.00 0.00 4.26
338 339 0.745845 CTTATGCCTCACCTTGCGCT 60.746 55.000 9.73 0.00 0.00 5.92
339 340 1.718757 CCTTATGCCTCACCTTGCGC 61.719 60.000 0.00 0.00 0.00 6.09
340 341 0.392998 ACCTTATGCCTCACCTTGCG 60.393 55.000 0.00 0.00 0.00 4.85
341 342 1.474077 CAACCTTATGCCTCACCTTGC 59.526 52.381 0.00 0.00 0.00 4.01
342 343 1.474077 GCAACCTTATGCCTCACCTTG 59.526 52.381 0.00 0.00 40.49 3.61
343 344 1.839424 GCAACCTTATGCCTCACCTT 58.161 50.000 0.00 0.00 40.49 3.50
344 345 0.392998 CGCAACCTTATGCCTCACCT 60.393 55.000 0.00 0.00 43.47 4.00
345 346 1.993369 GCGCAACCTTATGCCTCACC 61.993 60.000 0.30 0.00 43.47 4.02
346 347 1.305219 TGCGCAACCTTATGCCTCAC 61.305 55.000 8.16 0.00 43.47 3.51
347 348 1.002746 TGCGCAACCTTATGCCTCA 60.003 52.632 8.16 0.00 43.47 3.86
348 349 1.305219 TGTGCGCAACCTTATGCCTC 61.305 55.000 14.00 0.00 43.47 4.70
349 350 0.893270 TTGTGCGCAACCTTATGCCT 60.893 50.000 14.00 0.00 43.47 4.75
350 351 0.456653 CTTGTGCGCAACCTTATGCC 60.457 55.000 14.00 0.00 43.47 4.40
351 352 1.072666 GCTTGTGCGCAACCTTATGC 61.073 55.000 14.00 6.24 42.94 3.14
352 353 0.240678 TGCTTGTGCGCAACCTTATG 59.759 50.000 14.00 0.00 43.34 1.90
353 354 0.958091 TTGCTTGTGCGCAACCTTAT 59.042 45.000 14.00 0.00 44.30 1.73
354 355 2.409399 TTGCTTGTGCGCAACCTTA 58.591 47.368 14.00 0.00 44.30 2.69
355 356 3.205395 TTGCTTGTGCGCAACCTT 58.795 50.000 14.00 0.00 44.30 3.50
359 360 2.327592 CGAGTTGCTTGTGCGCAA 59.672 55.556 14.00 12.92 46.73 4.85
360 361 2.894879 ACGAGTTGCTTGTGCGCA 60.895 55.556 5.66 5.66 43.34 6.09
361 362 2.425773 CACGAGTTGCTTGTGCGC 60.426 61.111 0.00 0.00 38.76 6.09
362 363 1.368019 CACACGAGTTGCTTGTGCG 60.368 57.895 14.47 3.79 46.60 5.34
363 364 1.009675 CCACACGAGTTGCTTGTGC 60.010 57.895 14.47 0.00 46.60 4.57
365 366 3.420943 GCCACACGAGTTGCTTGT 58.579 55.556 1.77 0.00 33.85 3.16
376 377 0.462047 CTTATGAGGGGACGCCACAC 60.462 60.000 10.81 2.60 0.00 3.82
377 378 1.904771 CTTATGAGGGGACGCCACA 59.095 57.895 10.98 10.98 0.00 4.17
378 379 1.523938 GCTTATGAGGGGACGCCAC 60.524 63.158 11.67 5.08 0.00 5.01
379 380 1.992834 TGCTTATGAGGGGACGCCA 60.993 57.895 11.67 0.00 0.00 5.69
380 381 1.523938 GTGCTTATGAGGGGACGCC 60.524 63.158 0.00 0.00 0.00 5.68
381 382 1.883084 CGTGCTTATGAGGGGACGC 60.883 63.158 0.00 0.00 39.94 5.19
382 383 0.174845 TTCGTGCTTATGAGGGGACG 59.825 55.000 0.00 0.00 45.83 4.79
383 384 1.473434 CCTTCGTGCTTATGAGGGGAC 60.473 57.143 0.00 0.00 0.00 4.46
384 385 0.830648 CCTTCGTGCTTATGAGGGGA 59.169 55.000 0.00 0.00 0.00 4.81
385 386 0.830648 TCCTTCGTGCTTATGAGGGG 59.169 55.000 0.00 0.00 32.55 4.79
386 387 2.103094 TGATCCTTCGTGCTTATGAGGG 59.897 50.000 0.00 0.00 32.93 4.30
387 388 3.459232 TGATCCTTCGTGCTTATGAGG 57.541 47.619 0.00 0.00 0.00 3.86
388 389 4.625028 TGATGATCCTTCGTGCTTATGAG 58.375 43.478 0.00 0.00 0.00 2.90
389 390 4.670896 TGATGATCCTTCGTGCTTATGA 57.329 40.909 0.00 0.00 0.00 2.15
390 391 5.467735 TCATTGATGATCCTTCGTGCTTATG 59.532 40.000 0.00 0.00 0.00 1.90
391 392 5.468072 GTCATTGATGATCCTTCGTGCTTAT 59.532 40.000 0.00 0.00 39.30 1.73
392 393 4.811024 GTCATTGATGATCCTTCGTGCTTA 59.189 41.667 0.00 0.00 39.30 3.09
393 394 3.624861 GTCATTGATGATCCTTCGTGCTT 59.375 43.478 0.00 0.00 39.30 3.91
394 395 3.201290 GTCATTGATGATCCTTCGTGCT 58.799 45.455 0.00 0.00 39.30 4.40
395 396 2.289002 GGTCATTGATGATCCTTCGTGC 59.711 50.000 0.00 0.00 39.30 5.34
396 397 3.534554 TGGTCATTGATGATCCTTCGTG 58.465 45.455 2.01 0.00 37.11 4.35
397 398 3.912496 TGGTCATTGATGATCCTTCGT 57.088 42.857 2.01 0.00 37.11 3.85
398 399 4.194640 AGTTGGTCATTGATGATCCTTCG 58.805 43.478 2.01 0.00 37.11 3.79
399 400 6.599244 TGTAAGTTGGTCATTGATGATCCTTC 59.401 38.462 2.01 0.00 37.11 3.46
400 401 6.375455 GTGTAAGTTGGTCATTGATGATCCTT 59.625 38.462 2.01 2.42 37.11 3.36
401 402 5.882557 GTGTAAGTTGGTCATTGATGATCCT 59.117 40.000 2.01 0.00 37.11 3.24
402 403 5.066505 GGTGTAAGTTGGTCATTGATGATCC 59.933 44.000 2.01 4.32 37.11 3.36
403 404 5.066505 GGGTGTAAGTTGGTCATTGATGATC 59.933 44.000 0.00 0.00 39.30 2.92
404 405 4.949856 GGGTGTAAGTTGGTCATTGATGAT 59.050 41.667 0.00 0.00 39.30 2.45
405 406 4.331968 GGGTGTAAGTTGGTCATTGATGA 58.668 43.478 0.00 0.00 0.00 2.92
406 407 3.443681 GGGGTGTAAGTTGGTCATTGATG 59.556 47.826 0.00 0.00 0.00 3.07
407 408 3.563479 GGGGGTGTAAGTTGGTCATTGAT 60.563 47.826 0.00 0.00 0.00 2.57
408 409 2.224917 GGGGGTGTAAGTTGGTCATTGA 60.225 50.000 0.00 0.00 0.00 2.57
409 410 2.167662 GGGGGTGTAAGTTGGTCATTG 58.832 52.381 0.00 0.00 0.00 2.82
410 411 2.597578 GGGGGTGTAAGTTGGTCATT 57.402 50.000 0.00 0.00 0.00 2.57
439 440 4.412199 TGGAAATTATCTACTGACAGGGGG 59.588 45.833 7.51 0.00 0.00 5.40
440 441 5.104527 TGTGGAAATTATCTACTGACAGGGG 60.105 44.000 7.51 0.00 40.04 4.79
441 442 5.817816 GTGTGGAAATTATCTACTGACAGGG 59.182 44.000 7.51 0.00 40.04 4.45
442 443 5.817816 GGTGTGGAAATTATCTACTGACAGG 59.182 44.000 7.51 0.00 40.04 4.00
443 444 5.520288 CGGTGTGGAAATTATCTACTGACAG 59.480 44.000 0.00 0.00 40.04 3.51
444 445 5.416083 CGGTGTGGAAATTATCTACTGACA 58.584 41.667 5.99 0.00 40.04 3.58
445 446 4.809426 CCGGTGTGGAAATTATCTACTGAC 59.191 45.833 0.00 0.00 40.04 3.51
446 447 4.712829 TCCGGTGTGGAAATTATCTACTGA 59.287 41.667 0.00 0.00 46.38 3.41
447 448 5.018539 TCCGGTGTGGAAATTATCTACTG 57.981 43.478 0.00 0.00 46.38 2.74
500 502 5.880054 ACGTTTTTCTAGTTCCATGGATG 57.120 39.130 17.06 6.74 0.00 3.51
503 505 8.488651 ACTAATACGTTTTTCTAGTTCCATGG 57.511 34.615 4.97 4.97 0.00 3.66
544 546 0.451383 GCTGCATTGTGACGGCAATA 59.549 50.000 0.00 0.00 37.00 1.90
562 564 2.481471 GCTAGGGGCATTGTTCCGC 61.481 63.158 0.00 0.00 41.35 5.54
586 588 3.362693 GCGACCTATACGTAGCAAATTGC 60.363 47.826 10.41 10.41 45.46 3.56
663 669 3.206150 GCAGGAATTTTCTGGCTCGATA 58.794 45.455 6.82 0.00 33.16 2.92
688 698 4.326278 TGAACGATCGACAATCTAAAGTGC 59.674 41.667 24.34 0.00 31.68 4.40
725 735 3.374367 TCGTCGTCACTAAGAAGATCAGG 59.626 47.826 0.00 0.00 37.10 3.86
894 915 4.919774 AACAAAGGGTTTCAAAGGGTTT 57.080 36.364 0.00 0.00 35.82 3.27
895 916 7.678207 TTATAACAAAGGGTTTCAAAGGGTT 57.322 32.000 0.00 0.00 40.96 4.11
971 995 0.102481 GTCGCGGTATGTGGATCTGT 59.898 55.000 6.13 0.00 0.00 3.41
978 1002 1.390123 CTTCACAAGTCGCGGTATGTG 59.610 52.381 23.68 23.68 43.42 3.21
979 1003 1.710013 CTTCACAAGTCGCGGTATGT 58.290 50.000 6.13 5.98 0.00 2.29
980 1004 0.370273 GCTTCACAAGTCGCGGTATG 59.630 55.000 6.13 5.26 0.00 2.39
1038 1062 1.434622 CTGCAGCAGAGGCCGTAATG 61.435 60.000 18.42 0.00 42.56 1.90
1128 1152 5.944007 AGATTGCTTCCCATTAAGTACGTTT 59.056 36.000 0.00 0.00 0.00 3.60
1257 1289 0.911769 TCTGGATCCGTCATTGGCTT 59.088 50.000 7.39 0.00 0.00 4.35
1350 1386 9.982651 ACGATGTGCTACTAGTATTCATTTATT 57.017 29.630 2.33 0.00 0.00 1.40
1397 1433 7.627340 AGCAATATTACACGTTAACACTATGC 58.373 34.615 6.39 3.68 0.00 3.14
1400 1436 8.991243 AAGAGCAATATTACACGTTAACACTA 57.009 30.769 6.39 0.00 0.00 2.74
1467 1503 4.642885 TGACATTTGAGAAACCCGAAAGTT 59.357 37.500 0.00 0.00 0.00 2.66
1473 1509 2.226437 CAGGTGACATTTGAGAAACCCG 59.774 50.000 0.00 0.00 0.00 5.28
1479 1515 4.055360 CGTGTTACAGGTGACATTTGAGA 58.945 43.478 0.22 0.00 31.70 3.27
1507 1543 8.590719 TGATGTGTTTGTAAGTTGTCGTTATA 57.409 30.769 0.00 0.00 0.00 0.98
1541 1577 2.730382 TGAGCTATCCGACCACTTGTA 58.270 47.619 0.00 0.00 0.00 2.41
1566 1602 1.275291 TCGTCGGAGAAGCAAATCCTT 59.725 47.619 0.00 0.00 39.69 3.36
1567 1603 0.895530 TCGTCGGAGAAGCAAATCCT 59.104 50.000 0.00 0.00 39.69 3.24
1605 1642 1.826024 GCCATCACATCGAGAGGGT 59.174 57.895 5.84 0.00 39.08 4.34
1660 1697 1.252215 TGTGTTCCCGCATCCTCGTA 61.252 55.000 0.00 0.00 0.00 3.43
1687 1724 7.025485 TCGTTACCGGTTTTGTTCTTATTTT 57.975 32.000 15.04 0.00 33.95 1.82
1762 1803 6.127814 GCTTCATGATTCTCACAAAATCCAGA 60.128 38.462 0.00 0.00 33.13 3.86
1767 1808 6.872020 CCTTTGCTTCATGATTCTCACAAAAT 59.128 34.615 0.00 0.00 0.00 1.82
1777 1819 4.337555 CGATCTTCCCTTTGCTTCATGATT 59.662 41.667 0.00 0.00 0.00 2.57
1800 1842 5.353123 TCGAGTAAACCTTTGGTTATCATGC 59.647 40.000 2.15 0.00 46.20 4.06
2020 2072 4.362470 TCCGGATCCTCTCGAAACTATA 57.638 45.455 10.75 0.00 0.00 1.31
2091 2143 4.567558 TGCTTAGCGCGCTATTTAAAACTA 59.432 37.500 38.51 20.65 43.27 2.24
2092 2144 3.372822 TGCTTAGCGCGCTATTTAAAACT 59.627 39.130 38.51 14.50 43.27 2.66
2093 2145 3.676540 TGCTTAGCGCGCTATTTAAAAC 58.323 40.909 38.51 22.00 43.27 2.43
2094 2146 4.272504 AGATGCTTAGCGCGCTATTTAAAA 59.727 37.500 38.51 24.43 43.27 1.52
2095 2147 3.807622 AGATGCTTAGCGCGCTATTTAAA 59.192 39.130 38.51 25.16 43.27 1.52
2096 2148 3.390135 AGATGCTTAGCGCGCTATTTAA 58.610 40.909 38.51 25.53 43.27 1.52
2097 2149 3.026630 AGATGCTTAGCGCGCTATTTA 57.973 42.857 38.51 26.65 43.27 1.40
2098 2150 1.871080 AGATGCTTAGCGCGCTATTT 58.129 45.000 38.51 23.54 43.27 1.40
2099 2151 1.871080 AAGATGCTTAGCGCGCTATT 58.129 45.000 38.51 26.01 43.27 1.73
2100 2152 2.600731 CTAAGATGCTTAGCGCGCTAT 58.399 47.619 38.51 26.50 43.27 2.97
2101 2153 1.930817 GCTAAGATGCTTAGCGCGCTA 60.931 52.381 35.48 35.48 43.27 4.26
2102 2154 1.218230 GCTAAGATGCTTAGCGCGCT 61.218 55.000 38.01 38.01 43.27 5.92
2103 2155 1.202816 GCTAAGATGCTTAGCGCGC 59.797 57.895 26.66 26.66 43.27 6.86
2107 2159 1.560860 CCGCCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
2108 2160 0.032130 TCCGCCGCTAAGATGCTTAG 59.968 55.000 9.30 9.30 0.00 2.18
2109 2161 0.249322 GTCCGCCGCTAAGATGCTTA 60.249 55.000 0.00 0.00 0.00 3.09
2110 2162 1.521681 GTCCGCCGCTAAGATGCTT 60.522 57.895 0.00 0.00 0.00 3.91
2111 2163 2.107141 GTCCGCCGCTAAGATGCT 59.893 61.111 0.00 0.00 0.00 3.79
2112 2164 2.967615 GGTCCGCCGCTAAGATGC 60.968 66.667 0.00 0.00 0.00 3.91
2113 2165 1.300233 GAGGTCCGCCGCTAAGATG 60.300 63.158 0.00 0.00 40.50 2.90
2114 2166 1.043673 AAGAGGTCCGCCGCTAAGAT 61.044 55.000 0.00 0.00 44.34 2.40
2115 2167 1.664321 GAAGAGGTCCGCCGCTAAGA 61.664 60.000 0.00 0.00 44.34 2.10
2116 2168 1.227002 GAAGAGGTCCGCCGCTAAG 60.227 63.158 0.00 0.00 44.34 2.18
2117 2169 2.718073 GGAAGAGGTCCGCCGCTAA 61.718 63.158 0.00 0.00 44.34 3.09
2118 2170 3.145551 GGAAGAGGTCCGCCGCTA 61.146 66.667 0.00 0.00 44.34 4.26
2123 2175 7.905656 GCTATAGCATATGGAAGAGGTCCGC 62.906 52.000 20.01 0.00 44.91 5.54
2124 2176 4.440802 GCTATAGCATATGGAAGAGGTCCG 60.441 50.000 20.01 0.00 44.91 4.79
2125 2177 4.440802 CGCTATAGCATATGGAAGAGGTCC 60.441 50.000 23.99 0.00 43.81 4.46
2126 2178 4.158764 ACGCTATAGCATATGGAAGAGGTC 59.841 45.833 23.99 0.00 42.21 3.85
2127 2179 4.081972 CACGCTATAGCATATGGAAGAGGT 60.082 45.833 23.99 6.60 42.21 3.85
2128 2180 4.428209 CACGCTATAGCATATGGAAGAGG 58.572 47.826 23.99 5.98 42.21 3.69
2129 2181 3.862267 GCACGCTATAGCATATGGAAGAG 59.138 47.826 23.99 6.48 42.21 2.85
2130 2182 3.511540 AGCACGCTATAGCATATGGAAGA 59.488 43.478 23.99 0.00 42.21 2.87
2131 2183 3.854666 AGCACGCTATAGCATATGGAAG 58.145 45.455 23.99 7.87 42.21 3.46
2132 2184 3.961480 AGCACGCTATAGCATATGGAA 57.039 42.857 23.99 0.00 42.21 3.53
2133 2185 6.319141 CTATAGCACGCTATAGCATATGGA 57.681 41.667 25.42 5.24 46.26 3.41
2142 2194 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
2143 2195 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
2144 2196 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
2145 2197 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
2146 2198 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
2154 2206 2.868196 CGCGCTATAGCTCCGCTA 59.132 61.111 21.98 0.00 45.55 4.26
2157 2209 0.179161 AATAGCGCGCTATAGCTCCG 60.179 55.000 43.81 22.32 43.44 4.63
2158 2210 1.997669 AAATAGCGCGCTATAGCTCC 58.002 50.000 43.81 10.26 43.44 4.70
2159 2211 5.511088 TTTTAAATAGCGCGCTATAGCTC 57.489 39.130 43.81 13.77 43.44 4.09
2160 2212 5.408604 ACATTTTAAATAGCGCGCTATAGCT 59.591 36.000 43.81 33.17 46.53 3.32
2161 2213 5.618561 ACATTTTAAATAGCGCGCTATAGC 58.381 37.500 43.81 15.09 38.20 2.97
2162 2214 7.586300 ACAAACATTTTAAATAGCGCGCTATAG 59.414 33.333 43.81 29.40 38.20 1.31
2163 2215 7.411274 ACAAACATTTTAAATAGCGCGCTATA 58.589 30.769 43.81 31.73 38.20 1.31
2164 2216 6.262601 ACAAACATTTTAAATAGCGCGCTAT 58.737 32.000 40.32 40.32 40.63 2.97
2165 2217 5.632959 ACAAACATTTTAAATAGCGCGCTA 58.367 33.333 39.72 39.72 0.00 4.26
2166 2218 4.481463 ACAAACATTTTAAATAGCGCGCT 58.519 34.783 38.01 38.01 0.00 5.92
2167 2219 4.816277 ACAAACATTTTAAATAGCGCGC 57.184 36.364 26.66 26.66 0.00 6.86
2168 2220 6.369326 TGAACAAACATTTTAAATAGCGCG 57.631 33.333 0.00 0.00 0.00 6.86
2169 2221 9.039500 CAAATGAACAAACATTTTAAATAGCGC 57.961 29.630 0.00 0.00 44.63 5.92
2177 2229 8.669243 GGTCCAAACAAATGAACAAACATTTTA 58.331 29.630 0.00 0.00 44.63 1.52
2178 2230 7.175641 TGGTCCAAACAAATGAACAAACATTTT 59.824 29.630 0.00 0.00 44.63 1.82
2179 2231 6.656693 TGGTCCAAACAAATGAACAAACATTT 59.343 30.769 0.00 0.00 46.85 2.32
2180 2232 6.176183 TGGTCCAAACAAATGAACAAACATT 58.824 32.000 0.00 0.00 41.43 2.71
2181 2233 5.738909 TGGTCCAAACAAATGAACAAACAT 58.261 33.333 0.00 0.00 0.00 2.71
2182 2234 5.152623 TGGTCCAAACAAATGAACAAACA 57.847 34.783 0.00 0.00 0.00 2.83
2183 2235 6.148645 ACTTTGGTCCAAACAAATGAACAAAC 59.851 34.615 13.26 0.00 39.91 2.93
2184 2236 6.234177 ACTTTGGTCCAAACAAATGAACAAA 58.766 32.000 13.26 0.00 41.86 2.83
2185 2237 5.799213 ACTTTGGTCCAAACAAATGAACAA 58.201 33.333 13.26 0.00 37.22 2.83
2186 2238 5.186797 AGACTTTGGTCCAAACAAATGAACA 59.813 36.000 13.26 0.00 43.05 3.18
2187 2239 5.660460 AGACTTTGGTCCAAACAAATGAAC 58.340 37.500 13.26 4.31 43.05 3.18
2188 2240 5.656416 AGAGACTTTGGTCCAAACAAATGAA 59.344 36.000 13.26 0.00 43.05 2.57
2189 2241 5.200483 AGAGACTTTGGTCCAAACAAATGA 58.800 37.500 13.26 0.00 43.05 2.57
2190 2242 5.520376 AGAGACTTTGGTCCAAACAAATG 57.480 39.130 13.26 6.01 43.05 2.32
2191 2243 7.277174 CTAAGAGACTTTGGTCCAAACAAAT 57.723 36.000 13.26 0.00 43.05 2.32
2192 2244 6.693315 CTAAGAGACTTTGGTCCAAACAAA 57.307 37.500 13.26 0.00 43.05 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.