Multiple sequence alignment - TraesCS2A01G048600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G048600 chr2A 100.000 3493 0 0 1 3493 18832595 18836087 0.000000e+00 6451.0
1 TraesCS2A01G048600 chr2D 93.893 1179 51 13 1231 2405 17452847 17454008 0.000000e+00 1759.0
2 TraesCS2A01G048600 chr2D 91.383 1056 55 7 169 1210 17451830 17452863 0.000000e+00 1413.0
3 TraesCS2A01G048600 chr2D 88.000 175 7 5 2408 2568 17454063 17454237 9.890000e-46 195.0
4 TraesCS2A01G048600 chr2D 87.413 143 15 3 21 163 17439562 17439701 1.000000e-35 161.0
5 TraesCS2A01G048600 chr2D 97.674 43 1 0 2622 2664 17454237 17454279 1.340000e-09 75.0
6 TraesCS2A01G048600 chr2B 90.193 1193 73 21 1231 2405 29761094 29759928 0.000000e+00 1515.0
7 TraesCS2A01G048600 chr2B 85.580 853 62 14 369 1210 29761880 29761078 0.000000e+00 837.0
8 TraesCS2A01G048600 chr2B 84.672 274 18 9 2522 2771 29746865 29746592 5.790000e-63 252.0
9 TraesCS2A01G048600 chr2B 95.385 130 4 1 2403 2530 29759878 29759749 4.570000e-49 206.0
10 TraesCS2A01G048600 chr2B 100.000 29 0 0 2771 2799 795477830 795477802 2.000000e-03 54.7
11 TraesCS2A01G048600 chr5B 91.104 607 46 8 2761 3364 516024007 516024608 0.000000e+00 815.0
12 TraesCS2A01G048600 chr5B 84.474 599 65 12 2771 3367 122836821 122836249 1.820000e-157 566.0
13 TraesCS2A01G048600 chr3A 89.621 607 38 8 2762 3367 657463909 657463327 0.000000e+00 749.0
14 TraesCS2A01G048600 chr3A 88.926 605 42 10 2762 3364 442773063 442773644 0.000000e+00 723.0
15 TraesCS2A01G048600 chr4A 89.465 598 40 6 2770 3367 374500677 374500103 0.000000e+00 734.0
16 TraesCS2A01G048600 chr1A 89.316 599 38 11 2770 3367 471475499 471474926 0.000000e+00 728.0
17 TraesCS2A01G048600 chr5A 86.080 625 61 9 2767 3368 383170731 383171352 0.000000e+00 649.0
18 TraesCS2A01G048600 chr6A 91.546 414 31 4 2954 3367 112265025 112264616 5.060000e-158 568.0
19 TraesCS2A01G048600 chr7B 83.612 598 70 15 2775 3369 23444279 23443707 1.430000e-148 536.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G048600 chr2A 18832595 18836087 3492 False 6451.000000 6451 100.0000 1 3493 1 chr2A.!!$F1 3492
1 TraesCS2A01G048600 chr2D 17451830 17454279 2449 False 860.500000 1759 92.7375 169 2664 4 chr2D.!!$F2 2495
2 TraesCS2A01G048600 chr2B 29759749 29761880 2131 True 852.666667 1515 90.3860 369 2530 3 chr2B.!!$R3 2161
3 TraesCS2A01G048600 chr5B 516024007 516024608 601 False 815.000000 815 91.1040 2761 3364 1 chr5B.!!$F1 603
4 TraesCS2A01G048600 chr5B 122836249 122836821 572 True 566.000000 566 84.4740 2771 3367 1 chr5B.!!$R1 596
5 TraesCS2A01G048600 chr3A 657463327 657463909 582 True 749.000000 749 89.6210 2762 3367 1 chr3A.!!$R1 605
6 TraesCS2A01G048600 chr3A 442773063 442773644 581 False 723.000000 723 88.9260 2762 3364 1 chr3A.!!$F1 602
7 TraesCS2A01G048600 chr4A 374500103 374500677 574 True 734.000000 734 89.4650 2770 3367 1 chr4A.!!$R1 597
8 TraesCS2A01G048600 chr1A 471474926 471475499 573 True 728.000000 728 89.3160 2770 3367 1 chr1A.!!$R1 597
9 TraesCS2A01G048600 chr5A 383170731 383171352 621 False 649.000000 649 86.0800 2767 3368 1 chr5A.!!$F1 601
10 TraesCS2A01G048600 chr7B 23443707 23444279 572 True 536.000000 536 83.6120 2775 3369 1 chr7B.!!$R1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.178068 ATGGACCATGTGGACTACGC 59.822 55.0 6.06 0.00 38.94 4.42 F
756 779 0.229753 GAGCGAACACAAGACACGTG 59.770 55.0 15.48 15.48 40.32 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1229 1257 0.252742 ATGGAGGGAGGTCGGACTTT 60.253 55.0 8.23 0.00 0.0 2.66 R
2614 2742 0.172352 CATACGGCCGGCATTTTGTT 59.828 50.0 31.76 7.29 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.118454 CCGCAACTGCACCGGTAG 61.118 66.667 6.87 4.38 42.21 3.18
22 23 3.118454 CGCAACTGCACCGGTAGG 61.118 66.667 6.87 2.52 42.21 3.18
23 24 2.345991 GCAACTGCACCGGTAGGA 59.654 61.111 6.87 1.93 41.84 2.94
24 25 1.741770 GCAACTGCACCGGTAGGAG 60.742 63.158 6.87 15.11 41.84 3.69
25 26 1.079127 CAACTGCACCGGTAGGAGG 60.079 63.158 22.49 7.38 41.02 4.30
26 27 1.229082 AACTGCACCGGTAGGAGGA 60.229 57.895 22.49 7.02 41.02 3.71
27 28 3.211288 CTGCACCGGTAGGAGGAG 58.789 66.667 6.87 0.75 39.75 3.69
28 29 2.363795 TGCACCGGTAGGAGGAGG 60.364 66.667 6.87 0.00 41.02 4.30
29 30 2.363925 GCACCGGTAGGAGGAGGT 60.364 66.667 6.87 0.00 41.02 3.85
30 31 3.617368 CACCGGTAGGAGGAGGTG 58.383 66.667 6.87 0.00 46.52 4.00
31 32 2.363925 ACCGGTAGGAGGAGGTGC 60.364 66.667 4.49 0.00 41.02 5.01
32 33 3.155167 CCGGTAGGAGGAGGTGCC 61.155 72.222 0.00 0.00 41.02 5.01
40 41 2.681778 AGGAGGTGCCTCGTCTGG 60.682 66.667 11.66 0.00 46.97 3.86
41 42 2.997897 GGAGGTGCCTCGTCTGGT 60.998 66.667 11.66 0.00 43.59 4.00
42 43 2.584391 GGAGGTGCCTCGTCTGGTT 61.584 63.158 11.66 0.00 43.59 3.67
43 44 1.255667 GGAGGTGCCTCGTCTGGTTA 61.256 60.000 11.66 0.00 43.59 2.85
44 45 0.606604 GAGGTGCCTCGTCTGGTTAA 59.393 55.000 2.11 0.00 33.06 2.01
45 46 1.207329 GAGGTGCCTCGTCTGGTTAAT 59.793 52.381 2.11 0.00 33.06 1.40
46 47 1.066143 AGGTGCCTCGTCTGGTTAATG 60.066 52.381 0.00 0.00 0.00 1.90
47 48 1.338769 GGTGCCTCGTCTGGTTAATGT 60.339 52.381 0.00 0.00 0.00 2.71
48 49 2.423577 GTGCCTCGTCTGGTTAATGTT 58.576 47.619 0.00 0.00 0.00 2.71
49 50 2.812011 GTGCCTCGTCTGGTTAATGTTT 59.188 45.455 0.00 0.00 0.00 2.83
50 51 2.811431 TGCCTCGTCTGGTTAATGTTTG 59.189 45.455 0.00 0.00 0.00 2.93
51 52 2.812011 GCCTCGTCTGGTTAATGTTTGT 59.188 45.455 0.00 0.00 0.00 2.83
52 53 3.364964 GCCTCGTCTGGTTAATGTTTGTG 60.365 47.826 0.00 0.00 0.00 3.33
53 54 4.062293 CCTCGTCTGGTTAATGTTTGTGA 58.938 43.478 0.00 0.00 0.00 3.58
54 55 4.084013 CCTCGTCTGGTTAATGTTTGTGAC 60.084 45.833 0.00 0.00 0.00 3.67
55 56 4.443621 TCGTCTGGTTAATGTTTGTGACA 58.556 39.130 0.00 0.00 43.71 3.58
56 57 4.876679 TCGTCTGGTTAATGTTTGTGACAA 59.123 37.500 0.00 0.00 42.62 3.18
57 58 5.529430 TCGTCTGGTTAATGTTTGTGACAAT 59.471 36.000 0.00 0.00 42.62 2.71
58 59 5.624900 CGTCTGGTTAATGTTTGTGACAATG 59.375 40.000 0.00 0.00 42.62 2.82
59 60 6.512578 CGTCTGGTTAATGTTTGTGACAATGA 60.513 38.462 0.00 0.00 42.62 2.57
60 61 6.636850 GTCTGGTTAATGTTTGTGACAATGAC 59.363 38.462 0.00 0.00 42.62 3.06
61 62 6.319911 TCTGGTTAATGTTTGTGACAATGACA 59.680 34.615 5.42 5.42 42.62 3.58
62 63 7.014134 TCTGGTTAATGTTTGTGACAATGACAT 59.986 33.333 9.24 9.24 42.62 3.06
63 64 6.922407 TGGTTAATGTTTGTGACAATGACATG 59.078 34.615 14.33 0.00 42.62 3.21
64 65 6.365789 GGTTAATGTTTGTGACAATGACATGG 59.634 38.462 14.33 0.00 42.62 3.66
65 66 5.787953 AATGTTTGTGACAATGACATGGA 57.212 34.783 14.33 0.00 42.62 3.41
66 67 4.566545 TGTTTGTGACAATGACATGGAC 57.433 40.909 0.00 0.00 34.69 4.02
67 68 3.317711 TGTTTGTGACAATGACATGGACC 59.682 43.478 0.00 0.00 34.69 4.46
68 69 2.947127 TGTGACAATGACATGGACCA 57.053 45.000 0.00 0.00 0.00 4.02
69 70 3.438216 TGTGACAATGACATGGACCAT 57.562 42.857 0.00 0.00 0.00 3.55
70 71 3.083293 TGTGACAATGACATGGACCATG 58.917 45.455 29.36 29.36 46.18 3.66
79 80 1.939974 CATGGACCATGTGGACTACG 58.060 55.000 24.15 0.00 37.12 3.51
80 81 0.178068 ATGGACCATGTGGACTACGC 59.822 55.000 6.06 0.00 38.94 4.42
81 82 1.518572 GGACCATGTGGACTACGCG 60.519 63.158 3.53 3.53 38.94 6.01
82 83 1.214589 GACCATGTGGACTACGCGT 59.785 57.895 19.17 19.17 38.94 6.01
83 84 0.452987 GACCATGTGGACTACGCGTA 59.547 55.000 19.40 19.40 38.94 4.42
84 85 0.889994 ACCATGTGGACTACGCGTAA 59.110 50.000 20.97 4.31 38.94 3.18
85 86 1.274596 CCATGTGGACTACGCGTAAC 58.725 55.000 20.97 15.47 37.39 2.50
86 87 1.403116 CCATGTGGACTACGCGTAACA 60.403 52.381 20.97 20.53 37.39 2.41
87 88 2.330286 CATGTGGACTACGCGTAACAA 58.670 47.619 21.38 10.12 0.00 2.83
88 89 2.505628 TGTGGACTACGCGTAACAAA 57.494 45.000 20.97 11.69 0.00 2.83
89 90 2.819115 TGTGGACTACGCGTAACAAAA 58.181 42.857 20.97 3.44 0.00 2.44
90 91 3.391965 TGTGGACTACGCGTAACAAAAT 58.608 40.909 20.97 1.61 0.00 1.82
91 92 3.184783 TGTGGACTACGCGTAACAAAATG 59.815 43.478 20.97 9.08 0.00 2.32
92 93 2.737783 TGGACTACGCGTAACAAAATGG 59.262 45.455 20.97 8.33 0.00 3.16
93 94 2.738314 GGACTACGCGTAACAAAATGGT 59.262 45.455 20.97 11.66 0.00 3.55
94 95 3.187022 GGACTACGCGTAACAAAATGGTT 59.813 43.478 20.97 0.00 34.81 3.67
95 96 4.388469 GGACTACGCGTAACAAAATGGTTA 59.612 41.667 20.97 0.00 32.29 2.85
96 97 5.063817 GGACTACGCGTAACAAAATGGTTAT 59.936 40.000 20.97 0.00 35.83 1.89
97 98 6.098367 ACTACGCGTAACAAAATGGTTATC 57.902 37.500 20.97 0.00 35.83 1.75
98 99 5.870978 ACTACGCGTAACAAAATGGTTATCT 59.129 36.000 20.97 0.00 35.83 1.98
99 100 7.035004 ACTACGCGTAACAAAATGGTTATCTA 58.965 34.615 20.97 0.00 35.83 1.98
100 101 6.340537 ACGCGTAACAAAATGGTTATCTAG 57.659 37.500 11.67 0.00 35.83 2.43
101 102 5.870978 ACGCGTAACAAAATGGTTATCTAGT 59.129 36.000 11.67 0.00 35.83 2.57
102 103 6.182634 CGCGTAACAAAATGGTTATCTAGTG 58.817 40.000 0.00 0.00 35.83 2.74
103 104 6.483687 GCGTAACAAAATGGTTATCTAGTGG 58.516 40.000 0.00 0.00 35.83 4.00
104 105 6.314400 GCGTAACAAAATGGTTATCTAGTGGA 59.686 38.462 0.00 0.00 35.83 4.02
105 106 7.012044 GCGTAACAAAATGGTTATCTAGTGGAT 59.988 37.037 0.00 0.00 35.83 3.41
106 107 8.548721 CGTAACAAAATGGTTATCTAGTGGATC 58.451 37.037 0.00 0.00 35.83 3.36
107 108 9.614792 GTAACAAAATGGTTATCTAGTGGATCT 57.385 33.333 0.00 0.00 35.83 2.75
109 110 9.533831 AACAAAATGGTTATCTAGTGGATCTTT 57.466 29.630 0.00 0.00 35.98 2.52
110 111 9.178758 ACAAAATGGTTATCTAGTGGATCTTTC 57.821 33.333 0.00 0.00 35.98 2.62
111 112 9.401058 CAAAATGGTTATCTAGTGGATCTTTCT 57.599 33.333 0.00 0.00 35.98 2.52
112 113 8.970859 AAATGGTTATCTAGTGGATCTTTCTG 57.029 34.615 0.00 0.00 35.98 3.02
113 114 5.918608 TGGTTATCTAGTGGATCTTTCTGC 58.081 41.667 0.00 0.00 35.98 4.26
114 115 5.663106 TGGTTATCTAGTGGATCTTTCTGCT 59.337 40.000 0.00 0.00 35.98 4.24
115 116 5.988561 GGTTATCTAGTGGATCTTTCTGCTG 59.011 44.000 0.00 0.00 35.98 4.41
116 117 3.533606 TCTAGTGGATCTTTCTGCTGC 57.466 47.619 0.00 0.00 0.00 5.25
117 118 2.159184 TCTAGTGGATCTTTCTGCTGCG 60.159 50.000 0.00 0.00 0.00 5.18
118 119 1.023513 AGTGGATCTTTCTGCTGCGC 61.024 55.000 0.00 0.00 0.00 6.09
119 120 1.746615 TGGATCTTTCTGCTGCGCC 60.747 57.895 4.18 0.00 0.00 6.53
120 121 1.746615 GGATCTTTCTGCTGCGCCA 60.747 57.895 4.18 0.00 0.00 5.69
121 122 1.099879 GGATCTTTCTGCTGCGCCAT 61.100 55.000 4.18 0.00 0.00 4.40
122 123 1.586422 GATCTTTCTGCTGCGCCATA 58.414 50.000 4.18 0.00 0.00 2.74
123 124 2.149578 GATCTTTCTGCTGCGCCATAT 58.850 47.619 4.18 0.00 0.00 1.78
124 125 2.042686 TCTTTCTGCTGCGCCATATT 57.957 45.000 4.18 0.00 0.00 1.28
125 126 2.368439 TCTTTCTGCTGCGCCATATTT 58.632 42.857 4.18 0.00 0.00 1.40
126 127 2.355756 TCTTTCTGCTGCGCCATATTTC 59.644 45.455 4.18 0.00 0.00 2.17
127 128 2.042686 TTCTGCTGCGCCATATTTCT 57.957 45.000 4.18 0.00 0.00 2.52
128 129 1.302366 TCTGCTGCGCCATATTTCTG 58.698 50.000 4.18 0.00 0.00 3.02
129 130 1.134431 TCTGCTGCGCCATATTTCTGA 60.134 47.619 4.18 0.00 0.00 3.27
130 131 1.003116 CTGCTGCGCCATATTTCTGAC 60.003 52.381 4.18 0.00 0.00 3.51
131 132 1.303309 GCTGCGCCATATTTCTGACT 58.697 50.000 4.18 0.00 0.00 3.41
132 133 1.262683 GCTGCGCCATATTTCTGACTC 59.737 52.381 4.18 0.00 0.00 3.36
133 134 2.831333 CTGCGCCATATTTCTGACTCT 58.169 47.619 4.18 0.00 0.00 3.24
134 135 3.800261 GCTGCGCCATATTTCTGACTCTA 60.800 47.826 4.18 0.00 0.00 2.43
135 136 4.564041 CTGCGCCATATTTCTGACTCTAT 58.436 43.478 4.18 0.00 0.00 1.98
136 137 4.309933 TGCGCCATATTTCTGACTCTATG 58.690 43.478 4.18 0.00 0.00 2.23
137 138 4.202253 TGCGCCATATTTCTGACTCTATGT 60.202 41.667 4.18 0.00 0.00 2.29
138 139 4.752101 GCGCCATATTTCTGACTCTATGTT 59.248 41.667 0.00 0.00 0.00 2.71
139 140 5.237344 GCGCCATATTTCTGACTCTATGTTT 59.763 40.000 0.00 0.00 0.00 2.83
140 141 6.423905 GCGCCATATTTCTGACTCTATGTTTA 59.576 38.462 0.00 0.00 0.00 2.01
141 142 7.042051 GCGCCATATTTCTGACTCTATGTTTAA 60.042 37.037 0.00 0.00 0.00 1.52
142 143 8.491152 CGCCATATTTCTGACTCTATGTTTAAG 58.509 37.037 0.00 0.00 0.00 1.85
143 144 9.547753 GCCATATTTCTGACTCTATGTTTAAGA 57.452 33.333 0.00 0.00 0.00 2.10
150 151 8.268850 TCTGACTCTATGTTTAAGATTTTGGC 57.731 34.615 0.00 0.00 0.00 4.52
151 152 8.103305 TCTGACTCTATGTTTAAGATTTTGGCT 58.897 33.333 0.00 0.00 0.00 4.75
152 153 8.635765 TGACTCTATGTTTAAGATTTTGGCTT 57.364 30.769 0.00 0.00 0.00 4.35
153 154 9.077885 TGACTCTATGTTTAAGATTTTGGCTTT 57.922 29.630 0.00 0.00 0.00 3.51
154 155 9.561270 GACTCTATGTTTAAGATTTTGGCTTTC 57.439 33.333 0.00 0.00 0.00 2.62
155 156 9.301897 ACTCTATGTTTAAGATTTTGGCTTTCT 57.698 29.630 0.00 0.00 0.00 2.52
157 158 9.912634 TCTATGTTTAAGATTTTGGCTTTCTTG 57.087 29.630 0.00 0.00 32.28 3.02
158 159 6.843069 TGTTTAAGATTTTGGCTTTCTTGC 57.157 33.333 0.00 0.00 32.28 4.01
159 160 6.344500 TGTTTAAGATTTTGGCTTTCTTGCA 58.656 32.000 0.00 0.00 32.28 4.08
160 161 6.479660 TGTTTAAGATTTTGGCTTTCTTGCAG 59.520 34.615 0.00 0.00 32.28 4.41
161 162 3.036075 AGATTTTGGCTTTCTTGCAGC 57.964 42.857 0.00 0.00 36.45 5.25
162 163 2.366266 AGATTTTGGCTTTCTTGCAGCA 59.634 40.909 0.00 0.00 39.21 4.41
163 164 2.228138 TTTTGGCTTTCTTGCAGCAG 57.772 45.000 0.00 0.00 39.21 4.24
164 165 0.249573 TTTGGCTTTCTTGCAGCAGC 60.250 50.000 0.00 0.00 39.21 5.25
211 213 3.157217 AAGGATCAGCTAGGCGGCG 62.157 63.158 0.51 0.51 37.29 6.46
233 235 3.247173 GTGATTGATGATCTTCGAGTGGC 59.753 47.826 4.94 0.00 35.69 5.01
340 342 5.284079 GCATGTTTGTCTTGTTGTCTCATT 58.716 37.500 0.00 0.00 0.00 2.57
389 391 7.320443 TCTATTTCTTGTGTGAATATGGTGC 57.680 36.000 0.00 0.00 0.00 5.01
424 426 9.890629 ATTATAAAGTGAGATGAAAGTGTGCTA 57.109 29.630 0.00 0.00 0.00 3.49
437 439 8.579850 TGAAAGTGTGCTATGAAAGGATAAAT 57.420 30.769 0.00 0.00 0.00 1.40
462 464 7.033791 TGTTTTGCGGTTGAACTACATAAAAA 58.966 30.769 0.00 0.00 0.00 1.94
463 465 7.707035 TGTTTTGCGGTTGAACTACATAAAAAT 59.293 29.630 0.00 0.00 0.00 1.82
466 468 9.745880 TTTGCGGTTGAACTACATAAAAATTTA 57.254 25.926 0.00 0.00 0.00 1.40
498 504 6.821665 TGAACTCTAGGATAAATTTTCACCCG 59.178 38.462 0.00 0.00 0.00 5.28
510 516 5.733226 ATTTTCACCCGCAAAAAGAAAAG 57.267 34.783 0.00 0.00 40.28 2.27
543 552 7.648770 TCTTAAGGGTAAATTTAGGGAGCAAT 58.351 34.615 1.85 0.00 0.00 3.56
544 553 8.119891 TCTTAAGGGTAAATTTAGGGAGCAATT 58.880 33.333 1.85 0.00 0.00 2.32
562 571 2.725203 TTTGGACTTCCGTGGAGCCG 62.725 60.000 0.00 0.00 39.43 5.52
608 618 3.253432 CGGATGTGATTCGGTGAGAGATA 59.747 47.826 0.00 0.00 0.00 1.98
627 650 3.369921 CAAGAGTTTGCCTGGGCC 58.630 61.111 9.28 0.00 41.09 5.80
701 724 4.320023 GAGGAGAAACCAAGAGGAAGTTC 58.680 47.826 0.00 0.00 42.04 3.01
705 728 1.884235 AACCAAGAGGAAGTTCGCAG 58.116 50.000 0.00 0.00 38.69 5.18
745 768 2.947118 AAGACACGTGCGAGCGAACA 62.947 55.000 17.22 0.00 35.59 3.18
746 769 3.264487 GACACGTGCGAGCGAACAC 62.264 63.158 17.22 0.00 35.59 3.32
747 770 3.326981 CACGTGCGAGCGAACACA 61.327 61.111 0.82 0.00 36.57 3.72
748 771 2.583868 ACGTGCGAGCGAACACAA 60.584 55.556 1.54 0.00 36.57 3.33
749 772 2.168621 CGTGCGAGCGAACACAAG 59.831 61.111 1.54 0.00 36.57 3.16
750 773 2.300066 CGTGCGAGCGAACACAAGA 61.300 57.895 1.54 0.00 36.57 3.02
751 774 1.201825 GTGCGAGCGAACACAAGAC 59.798 57.895 0.00 0.00 36.77 3.01
752 775 1.227118 TGCGAGCGAACACAAGACA 60.227 52.632 0.00 0.00 0.00 3.41
753 776 1.201825 GCGAGCGAACACAAGACAC 59.798 57.895 0.00 0.00 0.00 3.67
754 777 1.482955 CGAGCGAACACAAGACACG 59.517 57.895 0.00 0.00 0.00 4.49
755 778 1.206745 CGAGCGAACACAAGACACGT 61.207 55.000 0.00 0.00 0.00 4.49
756 779 0.229753 GAGCGAACACAAGACACGTG 59.770 55.000 15.48 15.48 40.32 4.49
757 780 1.367665 GCGAACACAAGACACGTGC 60.368 57.895 17.22 8.74 37.93 5.34
758 781 1.084290 CGAACACAAGACACGTGCG 60.084 57.895 17.22 3.56 37.93 5.34
759 782 1.476235 CGAACACAAGACACGTGCGA 61.476 55.000 17.22 0.00 37.93 5.10
760 783 0.229753 GAACACAAGACACGTGCGAG 59.770 55.000 17.22 5.89 37.93 5.03
761 784 1.762222 AACACAAGACACGTGCGAGC 61.762 55.000 17.22 2.64 37.93 5.03
762 785 3.030308 ACAAGACACGTGCGAGCG 61.030 61.111 17.22 3.12 37.94 5.03
825 848 0.899019 GTGAGGAGTGAGGAGGAACC 59.101 60.000 0.00 0.00 39.35 3.62
835 858 2.087646 GAGGAGGAACCATTCAACAGC 58.912 52.381 0.00 0.00 42.04 4.40
869 892 4.485163 GAAGAAAGCATGGCACGTATTTT 58.515 39.130 0.00 0.00 0.00 1.82
873 896 2.378038 AGCATGGCACGTATTTTCCAT 58.622 42.857 0.00 0.00 39.72 3.41
979 1005 2.743928 CTCGGTTCAGCCCACAGC 60.744 66.667 0.00 0.00 44.25 4.40
992 1018 1.011242 CACAGCCAACGAACACACG 60.011 57.895 0.00 0.00 39.31 4.49
1035 1063 3.243367 CGAGAGAGAGAAAGATGGCGAAT 60.243 47.826 0.00 0.00 0.00 3.34
1199 1227 2.038975 TCTCCCTCCCCAAGTCCG 59.961 66.667 0.00 0.00 0.00 4.79
1205 1233 2.284405 TCCCCAAGTCCGACCTCC 60.284 66.667 0.00 0.00 0.00 4.30
1209 1237 2.359967 CCAAGTCCGACCTCCCTCC 61.360 68.421 0.00 0.00 0.00 4.30
1210 1238 2.362632 AAGTCCGACCTCCCTCCG 60.363 66.667 0.00 0.00 0.00 4.63
1211 1239 2.915504 AAGTCCGACCTCCCTCCGA 61.916 63.158 0.00 0.00 0.00 4.55
1212 1240 2.829458 GTCCGACCTCCCTCCGAG 60.829 72.222 0.00 0.00 38.46 4.63
1213 1241 3.336568 TCCGACCTCCCTCCGAGT 61.337 66.667 0.00 0.00 36.82 4.18
1214 1242 2.362632 CCGACCTCCCTCCGAGTT 60.363 66.667 0.00 0.00 36.82 3.01
1215 1243 2.711922 CCGACCTCCCTCCGAGTTG 61.712 68.421 0.00 0.00 36.82 3.16
1216 1244 1.977544 CGACCTCCCTCCGAGTTGT 60.978 63.158 0.00 0.00 36.82 3.32
1217 1245 1.891616 GACCTCCCTCCGAGTTGTC 59.108 63.158 0.00 0.00 36.82 3.18
1218 1246 0.898789 GACCTCCCTCCGAGTTGTCA 60.899 60.000 0.00 0.00 36.82 3.58
1219 1247 0.471211 ACCTCCCTCCGAGTTGTCAA 60.471 55.000 0.00 0.00 36.82 3.18
1220 1248 0.685097 CCTCCCTCCGAGTTGTCAAA 59.315 55.000 0.00 0.00 36.82 2.69
1221 1249 1.071699 CCTCCCTCCGAGTTGTCAAAA 59.928 52.381 0.00 0.00 36.82 2.44
1222 1250 2.486548 CCTCCCTCCGAGTTGTCAAAAA 60.487 50.000 0.00 0.00 36.82 1.94
1259 1287 4.247380 CCTCCATCCCTGCCGCTC 62.247 72.222 0.00 0.00 0.00 5.03
1433 1481 1.007118 GTCCCTTTCCATGGACCCATT 59.993 52.381 15.91 0.00 44.32 3.16
1444 1492 0.915364 GGACCCATTCTGAGCTTCCT 59.085 55.000 0.00 0.00 0.00 3.36
1489 1537 3.716872 AGCATCCCCTTTTTAGCTAGCTA 59.283 43.478 20.67 20.67 0.00 3.32
1520 1570 9.084533 GAATCTTACTATCTCACTACCTCCAAT 57.915 37.037 0.00 0.00 0.00 3.16
1522 1572 6.711194 TCTTACTATCTCACTACCTCCAATCG 59.289 42.308 0.00 0.00 0.00 3.34
1523 1573 4.794334 ACTATCTCACTACCTCCAATCGT 58.206 43.478 0.00 0.00 0.00 3.73
1524 1574 5.202004 ACTATCTCACTACCTCCAATCGTT 58.798 41.667 0.00 0.00 0.00 3.85
1604 1658 0.962489 ACTGACTTGTCCTGGTCTCG 59.038 55.000 0.00 0.00 34.01 4.04
1605 1659 0.962489 CTGACTTGTCCTGGTCTCGT 59.038 55.000 0.00 0.00 34.01 4.18
1609 1663 0.389391 CTTGTCCTGGTCTCGTGTGT 59.611 55.000 0.00 0.00 0.00 3.72
1622 1676 1.735360 GTGTGTGTGTGGCTGCAAT 59.265 52.632 0.50 0.00 0.00 3.56
1628 1682 1.290955 GTGTGGCTGCAATGCATGT 59.709 52.632 8.91 0.00 38.13 3.21
2065 2119 1.215647 CCCCTTCGAGTTCTCCACG 59.784 63.158 0.00 0.00 0.00 4.94
2071 2125 2.687805 CGAGTTCTCCACGGAGCGA 61.688 63.158 8.31 0.00 41.71 4.93
2072 2126 1.810532 GAGTTCTCCACGGAGCGAT 59.189 57.895 8.31 0.00 41.71 4.58
2078 2132 2.202919 CCACGGAGCGATGCATGA 60.203 61.111 2.46 0.00 0.00 3.07
2172 2226 4.406173 CGACGCCGAGACTGTGCT 62.406 66.667 0.00 0.00 38.22 4.40
2275 2335 3.200605 TGAGGCCTTAAGAATCAGATGCA 59.799 43.478 6.77 0.00 0.00 3.96
2284 2344 2.554462 AGAATCAGATGCAGCATGATGC 59.446 45.455 28.44 28.44 46.68 3.91
2329 2390 0.179240 CGCTTTCATGTCTGCACGTC 60.179 55.000 0.00 0.00 0.00 4.34
2399 2460 2.094234 GCCGCTGGACCATTTTATTTGT 60.094 45.455 0.00 0.00 0.00 2.83
2509 2632 6.367374 TGTGGATGTTACCTTTGTCTATCA 57.633 37.500 0.00 0.00 0.00 2.15
2539 2667 4.569761 TGTTATTTTTGCGGTGTTGCTA 57.430 36.364 0.00 0.00 35.36 3.49
2550 2678 2.223377 CGGTGTTGCTAAAACTGAGTCC 59.777 50.000 0.00 0.00 0.00 3.85
2552 2680 2.870411 GTGTTGCTAAAACTGAGTCCGT 59.130 45.455 0.00 0.00 0.00 4.69
2563 2691 2.691526 ACTGAGTCCGTTGTGTTAGTCA 59.308 45.455 0.00 0.00 0.00 3.41
2568 2696 6.282167 TGAGTCCGTTGTGTTAGTCAATTTA 58.718 36.000 0.00 0.00 0.00 1.40
2569 2697 6.201425 TGAGTCCGTTGTGTTAGTCAATTTAC 59.799 38.462 0.00 0.00 0.00 2.01
2570 2698 5.467735 AGTCCGTTGTGTTAGTCAATTTACC 59.532 40.000 0.00 0.00 0.00 2.85
2571 2699 5.236911 GTCCGTTGTGTTAGTCAATTTACCA 59.763 40.000 0.00 0.00 0.00 3.25
2572 2700 5.236911 TCCGTTGTGTTAGTCAATTTACCAC 59.763 40.000 0.00 0.00 0.00 4.16
2573 2701 5.445845 CGTTGTGTTAGTCAATTTACCACC 58.554 41.667 0.00 0.00 0.00 4.61
2574 2702 5.237779 CGTTGTGTTAGTCAATTTACCACCT 59.762 40.000 0.00 0.00 0.00 4.00
2575 2703 6.238538 CGTTGTGTTAGTCAATTTACCACCTT 60.239 38.462 0.00 0.00 0.00 3.50
2576 2704 6.627395 TGTGTTAGTCAATTTACCACCTTG 57.373 37.500 0.00 0.00 0.00 3.61
2577 2705 6.358178 TGTGTTAGTCAATTTACCACCTTGA 58.642 36.000 0.00 0.00 0.00 3.02
2578 2706 6.261381 TGTGTTAGTCAATTTACCACCTTGAC 59.739 38.462 6.55 6.55 45.75 3.18
2586 2714 9.139174 GTCAATTTACCACCTTGACAATTAATG 57.861 33.333 9.18 0.00 45.09 1.90
2587 2715 9.083422 TCAATTTACCACCTTGACAATTAATGA 57.917 29.630 0.00 0.00 0.00 2.57
2588 2716 9.703892 CAATTTACCACCTTGACAATTAATGAA 57.296 29.630 0.00 0.00 0.00 2.57
2592 2720 7.645058 ACCACCTTGACAATTAATGAATAGG 57.355 36.000 0.00 0.00 32.88 2.57
2593 2721 7.182060 ACCACCTTGACAATTAATGAATAGGT 58.818 34.615 0.00 0.00 37.06 3.08
2594 2722 7.673926 ACCACCTTGACAATTAATGAATAGGTT 59.326 33.333 0.00 0.00 35.62 3.50
2595 2723 7.975616 CCACCTTGACAATTAATGAATAGGTTG 59.024 37.037 0.00 0.00 35.62 3.77
2596 2724 8.739039 CACCTTGACAATTAATGAATAGGTTGA 58.261 33.333 0.00 0.00 35.62 3.18
2597 2725 9.308000 ACCTTGACAATTAATGAATAGGTTGAA 57.692 29.630 0.00 0.00 34.83 2.69
2610 2738 9.739276 ATGAATAGGTTGAAAGTTATTCTCACA 57.261 29.630 5.13 0.00 34.92 3.58
2611 2739 9.567776 TGAATAGGTTGAAAGTTATTCTCACAA 57.432 29.630 5.13 0.00 34.92 3.33
2649 2777 3.736252 CCGTATGATTTAGAGCGTCAAGG 59.264 47.826 0.00 0.00 0.00 3.61
2664 2792 1.822186 AAGGTTCGTGCGTTGGCTT 60.822 52.632 0.00 0.00 40.82 4.35
2665 2793 1.381165 AAGGTTCGTGCGTTGGCTTT 61.381 50.000 0.00 0.00 40.82 3.51
2666 2794 1.065109 GGTTCGTGCGTTGGCTTTT 59.935 52.632 0.00 0.00 40.82 2.27
2667 2795 0.526739 GGTTCGTGCGTTGGCTTTTT 60.527 50.000 0.00 0.00 40.82 1.94
2668 2796 0.570272 GTTCGTGCGTTGGCTTTTTG 59.430 50.000 0.00 0.00 40.82 2.44
2669 2797 0.526524 TTCGTGCGTTGGCTTTTTGG 60.527 50.000 0.00 0.00 40.82 3.28
2670 2798 2.584967 CGTGCGTTGGCTTTTTGGC 61.585 57.895 0.00 0.00 40.82 4.52
2671 2799 1.227234 GTGCGTTGGCTTTTTGGCT 60.227 52.632 0.00 0.00 42.34 4.75
2672 2800 1.227205 TGCGTTGGCTTTTTGGCTG 60.227 52.632 0.00 0.00 42.34 4.85
2673 2801 2.597713 GCGTTGGCTTTTTGGCTGC 61.598 57.895 0.00 0.00 42.34 5.25
2674 2802 1.067916 CGTTGGCTTTTTGGCTGCT 59.932 52.632 0.00 0.00 42.34 4.24
2675 2803 0.530431 CGTTGGCTTTTTGGCTGCTT 60.530 50.000 0.00 0.00 42.34 3.91
2676 2804 1.667236 GTTGGCTTTTTGGCTGCTTT 58.333 45.000 0.00 0.00 42.34 3.51
2677 2805 2.016318 GTTGGCTTTTTGGCTGCTTTT 58.984 42.857 0.00 0.00 42.34 2.27
2678 2806 2.416680 TGGCTTTTTGGCTGCTTTTT 57.583 40.000 0.00 0.00 42.34 1.94
2699 2827 6.484364 TTTTCCTTTGAGAAAATCTTGGCT 57.516 33.333 0.00 0.00 40.04 4.75
2700 2828 7.595819 TTTTCCTTTGAGAAAATCTTGGCTA 57.404 32.000 0.00 0.00 40.04 3.93
2701 2829 6.575162 TTCCTTTGAGAAAATCTTGGCTAC 57.425 37.500 0.00 0.00 0.00 3.58
2702 2830 5.630121 TCCTTTGAGAAAATCTTGGCTACA 58.370 37.500 0.00 0.00 0.00 2.74
2703 2831 6.248433 TCCTTTGAGAAAATCTTGGCTACAT 58.752 36.000 0.00 0.00 0.00 2.29
2704 2832 7.402054 TCCTTTGAGAAAATCTTGGCTACATA 58.598 34.615 0.00 0.00 0.00 2.29
2705 2833 8.055181 TCCTTTGAGAAAATCTTGGCTACATAT 58.945 33.333 0.00 0.00 0.00 1.78
2706 2834 8.689972 CCTTTGAGAAAATCTTGGCTACATATT 58.310 33.333 0.00 0.00 0.00 1.28
2708 2836 9.859427 TTTGAGAAAATCTTGGCTACATATTTG 57.141 29.630 0.00 0.00 0.00 2.32
2709 2837 7.999679 TGAGAAAATCTTGGCTACATATTTGG 58.000 34.615 0.00 0.00 0.00 3.28
2710 2838 7.833682 TGAGAAAATCTTGGCTACATATTTGGA 59.166 33.333 0.00 0.00 0.00 3.53
2711 2839 8.593945 AGAAAATCTTGGCTACATATTTGGAA 57.406 30.769 0.00 0.00 0.00 3.53
2712 2840 9.205513 AGAAAATCTTGGCTACATATTTGGAAT 57.794 29.630 0.00 0.00 0.00 3.01
2716 2844 7.905604 TCTTGGCTACATATTTGGAATATCG 57.094 36.000 0.00 0.00 0.00 2.92
2717 2845 6.878923 TCTTGGCTACATATTTGGAATATCGG 59.121 38.462 0.00 0.00 0.00 4.18
2718 2846 6.367374 TGGCTACATATTTGGAATATCGGA 57.633 37.500 0.00 0.00 0.00 4.55
2719 2847 6.170506 TGGCTACATATTTGGAATATCGGAC 58.829 40.000 0.00 0.00 0.00 4.79
2720 2848 5.291128 GGCTACATATTTGGAATATCGGACG 59.709 44.000 0.00 0.00 0.00 4.79
2721 2849 5.867716 GCTACATATTTGGAATATCGGACGT 59.132 40.000 0.00 0.00 0.00 4.34
2722 2850 6.183360 GCTACATATTTGGAATATCGGACGTG 60.183 42.308 0.00 0.00 0.00 4.49
2723 2851 4.994852 ACATATTTGGAATATCGGACGTGG 59.005 41.667 0.00 0.00 0.00 4.94
2724 2852 2.319136 TTTGGAATATCGGACGTGGG 57.681 50.000 0.00 0.00 0.00 4.61
2725 2853 0.466543 TTGGAATATCGGACGTGGGG 59.533 55.000 0.00 0.00 0.00 4.96
2726 2854 1.301479 GGAATATCGGACGTGGGGC 60.301 63.158 0.00 0.00 0.00 5.80
2727 2855 1.444250 GAATATCGGACGTGGGGCA 59.556 57.895 0.00 0.00 0.00 5.36
2728 2856 0.600255 GAATATCGGACGTGGGGCAG 60.600 60.000 0.00 0.00 0.00 4.85
2729 2857 2.660258 AATATCGGACGTGGGGCAGC 62.660 60.000 0.00 0.00 0.00 5.25
2740 2868 2.360475 GGGCAGCAGGACCTGTTC 60.360 66.667 22.58 11.48 43.78 3.18
2741 2869 2.743928 GGCAGCAGGACCTGTTCG 60.744 66.667 22.58 12.15 35.28 3.95
2742 2870 2.743928 GCAGCAGGACCTGTTCGG 60.744 66.667 22.58 8.89 35.28 4.30
2743 2871 2.743928 CAGCAGGACCTGTTCGGC 60.744 66.667 22.58 8.00 35.61 5.54
2744 2872 4.021925 AGCAGGACCTGTTCGGCC 62.022 66.667 22.58 4.94 35.61 6.13
2745 2873 4.329545 GCAGGACCTGTTCGGCCA 62.330 66.667 22.58 0.00 35.61 5.36
2746 2874 2.358737 CAGGACCTGTTCGGCCAC 60.359 66.667 13.84 0.00 35.61 5.01
2747 2875 2.526873 AGGACCTGTTCGGCCACT 60.527 61.111 2.24 0.00 35.61 4.00
2748 2876 2.358737 GGACCTGTTCGGCCACTG 60.359 66.667 2.24 0.00 35.61 3.66
2749 2877 2.358737 GACCTGTTCGGCCACTGG 60.359 66.667 15.24 15.24 40.70 4.00
2750 2878 3.901797 GACCTGTTCGGCCACTGGG 62.902 68.421 19.40 12.07 39.51 4.45
2773 2901 6.145535 GGCATTGTTCTCTTTGTTTCTACTG 58.854 40.000 0.00 0.00 0.00 2.74
2882 3014 6.241207 ACACTATCACTTTCAATTTCGTGG 57.759 37.500 0.00 0.00 0.00 4.94
2885 3017 6.797033 CACTATCACTTTCAATTTCGTGGAAC 59.203 38.462 0.00 0.00 0.00 3.62
2942 3074 6.991485 AAAACTCGTGCACATATTTGAAAG 57.009 33.333 18.64 0.00 0.00 2.62
3139 3275 7.779326 TGATGGATGAAAATCTGGTAATAAGCA 59.221 33.333 0.00 0.00 0.00 3.91
3174 3312 5.104259 AGGAGTAAGAAACATCCATGTCC 57.896 43.478 0.00 0.00 40.80 4.02
3181 3320 9.838339 AGTAAGAAACATCCATGTCCTTAATAG 57.162 33.333 12.41 0.00 40.80 1.73
3329 3487 4.729227 TTGAAGTTGGGGTTTGAAAGAC 57.271 40.909 0.00 0.00 0.00 3.01
3373 3534 8.114331 ACTTGAATCTGCAAAAGAATACATGA 57.886 30.769 0.00 0.00 38.79 3.07
3374 3535 8.579006 ACTTGAATCTGCAAAAGAATACATGAA 58.421 29.630 0.00 0.00 38.79 2.57
3375 3536 8.975410 TTGAATCTGCAAAAGAATACATGAAG 57.025 30.769 0.00 0.00 38.79 3.02
3376 3537 7.541162 TGAATCTGCAAAAGAATACATGAAGG 58.459 34.615 0.00 0.00 38.79 3.46
3377 3538 7.394077 TGAATCTGCAAAAGAATACATGAAGGA 59.606 33.333 0.00 0.00 38.79 3.36
3378 3539 7.893124 ATCTGCAAAAGAATACATGAAGGAT 57.107 32.000 0.00 0.00 38.79 3.24
3379 3540 8.985315 ATCTGCAAAAGAATACATGAAGGATA 57.015 30.769 0.00 0.00 38.79 2.59
3380 3541 8.806429 TCTGCAAAAGAATACATGAAGGATAA 57.194 30.769 0.00 0.00 29.54 1.75
3381 3542 8.677300 TCTGCAAAAGAATACATGAAGGATAAC 58.323 33.333 0.00 0.00 29.54 1.89
3382 3543 7.771183 TGCAAAAGAATACATGAAGGATAACC 58.229 34.615 0.00 0.00 0.00 2.85
3383 3544 7.147915 TGCAAAAGAATACATGAAGGATAACCC 60.148 37.037 0.00 0.00 36.73 4.11
3384 3545 7.684428 GCAAAAGAATACATGAAGGATAACCCC 60.684 40.741 0.00 0.00 36.73 4.95
3385 3546 6.848562 AAGAATACATGAAGGATAACCCCT 57.151 37.500 0.00 0.00 38.42 4.79
3386 3547 6.441088 AGAATACATGAAGGATAACCCCTC 57.559 41.667 0.00 0.00 34.95 4.30
3387 3548 4.891992 ATACATGAAGGATAACCCCTCG 57.108 45.455 0.00 0.00 34.95 4.63
3388 3549 1.141053 ACATGAAGGATAACCCCTCGC 59.859 52.381 0.00 0.00 34.95 5.03
3389 3550 0.393077 ATGAAGGATAACCCCTCGCG 59.607 55.000 0.00 0.00 34.95 5.87
3390 3551 0.974010 TGAAGGATAACCCCTCGCGT 60.974 55.000 5.77 0.00 34.95 6.01
3391 3552 0.529992 GAAGGATAACCCCTCGCGTG 60.530 60.000 5.77 2.75 34.95 5.34
3392 3553 1.262640 AAGGATAACCCCTCGCGTGT 61.263 55.000 5.77 0.00 34.95 4.49
3393 3554 1.227176 GGATAACCCCTCGCGTGTC 60.227 63.158 5.77 0.00 0.00 3.67
3394 3555 1.673808 GGATAACCCCTCGCGTGTCT 61.674 60.000 5.77 0.00 0.00 3.41
3395 3556 1.027357 GATAACCCCTCGCGTGTCTA 58.973 55.000 5.77 0.00 0.00 2.59
3396 3557 1.001597 GATAACCCCTCGCGTGTCTAG 60.002 57.143 5.77 0.00 0.00 2.43
3397 3558 1.660560 TAACCCCTCGCGTGTCTAGC 61.661 60.000 5.77 0.00 0.00 3.42
3398 3559 3.449227 CCCCTCGCGTGTCTAGCA 61.449 66.667 5.77 0.00 34.19 3.49
3399 3560 2.786495 CCCCTCGCGTGTCTAGCAT 61.786 63.158 5.77 0.00 34.19 3.79
3400 3561 1.141881 CCCTCGCGTGTCTAGCATT 59.858 57.895 5.77 0.00 34.19 3.56
3401 3562 0.384309 CCCTCGCGTGTCTAGCATTA 59.616 55.000 5.77 0.00 34.19 1.90
3402 3563 1.478137 CCTCGCGTGTCTAGCATTAC 58.522 55.000 5.77 0.00 34.19 1.89
3403 3564 1.065701 CCTCGCGTGTCTAGCATTACT 59.934 52.381 5.77 0.00 34.19 2.24
3404 3565 2.376956 CTCGCGTGTCTAGCATTACTC 58.623 52.381 5.77 0.00 34.19 2.59
3405 3566 1.113253 CGCGTGTCTAGCATTACTCG 58.887 55.000 0.00 0.00 36.12 4.18
3406 3567 1.531264 CGCGTGTCTAGCATTACTCGT 60.531 52.381 0.00 0.00 35.62 4.18
3407 3568 2.286008 CGCGTGTCTAGCATTACTCGTA 60.286 50.000 0.00 0.00 35.62 3.43
3408 3569 3.289911 GCGTGTCTAGCATTACTCGTAG 58.710 50.000 5.89 0.00 35.62 3.51
3409 3570 3.848917 GCGTGTCTAGCATTACTCGTAGG 60.849 52.174 5.89 0.00 35.62 3.18
3410 3571 3.558829 CGTGTCTAGCATTACTCGTAGGA 59.441 47.826 0.00 0.00 0.00 2.94
3411 3572 4.213694 CGTGTCTAGCATTACTCGTAGGAT 59.786 45.833 0.00 0.00 0.00 3.24
3412 3573 5.453648 GTGTCTAGCATTACTCGTAGGATG 58.546 45.833 0.00 0.00 0.00 3.51
3413 3574 4.519350 TGTCTAGCATTACTCGTAGGATGG 59.481 45.833 0.00 0.00 0.00 3.51
3414 3575 4.079970 TCTAGCATTACTCGTAGGATGGG 58.920 47.826 0.00 0.00 0.00 4.00
3415 3576 1.344763 AGCATTACTCGTAGGATGGGC 59.655 52.381 0.00 0.00 0.00 5.36
3416 3577 1.344763 GCATTACTCGTAGGATGGGCT 59.655 52.381 0.00 0.00 0.00 5.19
3417 3578 2.224305 GCATTACTCGTAGGATGGGCTT 60.224 50.000 0.00 0.00 0.00 4.35
3418 3579 3.393800 CATTACTCGTAGGATGGGCTTG 58.606 50.000 0.00 0.00 0.00 4.01
3419 3580 2.154567 TACTCGTAGGATGGGCTTGT 57.845 50.000 0.00 0.00 0.00 3.16
3420 3581 0.824759 ACTCGTAGGATGGGCTTGTC 59.175 55.000 0.00 0.00 0.00 3.18
3421 3582 1.115467 CTCGTAGGATGGGCTTGTCT 58.885 55.000 0.00 0.00 0.00 3.41
3422 3583 2.307768 CTCGTAGGATGGGCTTGTCTA 58.692 52.381 0.00 0.00 0.00 2.59
3423 3584 2.894126 CTCGTAGGATGGGCTTGTCTAT 59.106 50.000 0.00 0.00 0.00 1.98
3424 3585 3.305720 TCGTAGGATGGGCTTGTCTATT 58.694 45.455 0.00 0.00 0.00 1.73
3425 3586 3.709653 TCGTAGGATGGGCTTGTCTATTT 59.290 43.478 0.00 0.00 0.00 1.40
3426 3587 3.809832 CGTAGGATGGGCTTGTCTATTTG 59.190 47.826 0.00 0.00 0.00 2.32
3427 3588 2.659428 AGGATGGGCTTGTCTATTTGC 58.341 47.619 0.00 0.00 0.00 3.68
3428 3589 1.683385 GGATGGGCTTGTCTATTTGCC 59.317 52.381 0.00 0.00 44.22 4.52
3429 3590 2.659428 GATGGGCTTGTCTATTTGCCT 58.341 47.619 0.00 0.00 44.36 4.75
3430 3591 2.128771 TGGGCTTGTCTATTTGCCTC 57.871 50.000 0.00 0.00 44.36 4.70
3431 3592 1.354031 TGGGCTTGTCTATTTGCCTCA 59.646 47.619 0.00 0.00 44.36 3.86
3432 3593 2.019984 GGGCTTGTCTATTTGCCTCAG 58.980 52.381 0.00 0.00 44.36 3.35
3433 3594 2.619074 GGGCTTGTCTATTTGCCTCAGT 60.619 50.000 0.00 0.00 44.36 3.41
3434 3595 3.084786 GGCTTGTCTATTTGCCTCAGTT 58.915 45.455 0.00 0.00 41.92 3.16
3435 3596 4.261801 GGCTTGTCTATTTGCCTCAGTTA 58.738 43.478 0.00 0.00 41.92 2.24
3436 3597 4.884164 GGCTTGTCTATTTGCCTCAGTTAT 59.116 41.667 0.00 0.00 41.92 1.89
3437 3598 5.220931 GGCTTGTCTATTTGCCTCAGTTATG 60.221 44.000 0.00 0.00 41.92 1.90
3438 3599 5.586243 GCTTGTCTATTTGCCTCAGTTATGA 59.414 40.000 0.00 0.00 0.00 2.15
3451 3612 5.147330 TCAGTTATGAGTTGTGTGTAGGG 57.853 43.478 0.00 0.00 0.00 3.53
3452 3613 4.836175 TCAGTTATGAGTTGTGTGTAGGGA 59.164 41.667 0.00 0.00 0.00 4.20
3453 3614 5.305902 TCAGTTATGAGTTGTGTGTAGGGAA 59.694 40.000 0.00 0.00 0.00 3.97
3454 3615 5.408604 CAGTTATGAGTTGTGTGTAGGGAAC 59.591 44.000 0.00 0.00 0.00 3.62
3455 3616 5.071250 AGTTATGAGTTGTGTGTAGGGAACA 59.929 40.000 0.00 0.00 35.06 3.18
3456 3617 4.640771 ATGAGTTGTGTGTAGGGAACAT 57.359 40.909 0.00 0.00 41.10 2.71
3457 3618 5.755409 ATGAGTTGTGTGTAGGGAACATA 57.245 39.130 0.00 0.00 41.10 2.29
3458 3619 5.554437 TGAGTTGTGTGTAGGGAACATAA 57.446 39.130 0.00 0.00 41.10 1.90
3459 3620 5.931294 TGAGTTGTGTGTAGGGAACATAAA 58.069 37.500 0.00 0.00 41.10 1.40
3460 3621 6.358178 TGAGTTGTGTGTAGGGAACATAAAA 58.642 36.000 0.00 0.00 41.10 1.52
3461 3622 6.261381 TGAGTTGTGTGTAGGGAACATAAAAC 59.739 38.462 1.05 1.05 43.98 2.43
3462 3623 6.362248 AGTTGTGTGTAGGGAACATAAAACT 58.638 36.000 5.04 5.04 46.98 2.66
3463 3624 7.733402 GTTGTGTGTAGGGAACATAAAACTA 57.267 36.000 1.92 0.00 41.71 2.24
3464 3625 7.578852 GTTGTGTGTAGGGAACATAAAACTAC 58.421 38.462 1.92 0.00 41.71 2.73
3465 3626 6.232692 TGTGTGTAGGGAACATAAAACTACC 58.767 40.000 0.00 0.00 41.10 3.18
3466 3627 5.349543 GTGTGTAGGGAACATAAAACTACCG 59.650 44.000 0.00 0.00 41.10 4.02
3467 3628 5.011943 TGTGTAGGGAACATAAAACTACCGT 59.988 40.000 0.00 0.00 41.10 4.83
3468 3629 6.210385 TGTGTAGGGAACATAAAACTACCGTA 59.790 38.462 0.00 0.00 41.10 4.02
3469 3630 6.753744 GTGTAGGGAACATAAAACTACCGTAG 59.246 42.308 3.88 3.88 41.10 3.51
3470 3631 6.127366 TGTAGGGAACATAAAACTACCGTAGG 60.127 42.308 10.34 0.00 44.64 3.18
3487 3648 5.878133 CCGTAGGTGACTAGAGTTTCTTAC 58.122 45.833 0.00 0.00 45.49 2.34
3488 3649 5.647225 CCGTAGGTGACTAGAGTTTCTTACT 59.353 44.000 0.00 0.00 45.49 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.118454 CTACCGGTGCAGTTGCGG 61.118 66.667 19.93 0.00 45.83 5.69
5 6 3.118454 CCTACCGGTGCAGTTGCG 61.118 66.667 19.93 0.00 45.83 4.85
6 7 1.741770 CTCCTACCGGTGCAGTTGC 60.742 63.158 19.93 0.00 42.50 4.17
7 8 1.079127 CCTCCTACCGGTGCAGTTG 60.079 63.158 19.93 2.21 0.00 3.16
8 9 1.229082 TCCTCCTACCGGTGCAGTT 60.229 57.895 19.93 0.00 0.00 3.16
9 10 1.682684 CTCCTCCTACCGGTGCAGT 60.683 63.158 19.93 0.00 0.00 4.40
10 11 2.427245 CCTCCTCCTACCGGTGCAG 61.427 68.421 19.93 7.50 0.00 4.41
11 12 2.363795 CCTCCTCCTACCGGTGCA 60.364 66.667 19.93 0.00 0.00 4.57
12 13 2.363925 ACCTCCTCCTACCGGTGC 60.364 66.667 19.93 0.00 0.00 5.01
13 14 3.617368 CACCTCCTCCTACCGGTG 58.383 66.667 19.93 7.24 40.71 4.94
14 15 2.363925 GCACCTCCTCCTACCGGT 60.364 66.667 13.98 13.98 0.00 5.28
15 16 3.155167 GGCACCTCCTCCTACCGG 61.155 72.222 0.00 0.00 0.00 5.28
16 17 2.042843 AGGCACCTCCTCCTACCG 60.043 66.667 0.00 0.00 43.20 4.02
24 25 1.255667 TAACCAGACGAGGCACCTCC 61.256 60.000 11.09 0.00 39.77 4.30
25 26 0.606604 TTAACCAGACGAGGCACCTC 59.393 55.000 6.62 6.62 39.55 3.85
26 27 1.066143 CATTAACCAGACGAGGCACCT 60.066 52.381 0.00 0.00 0.00 4.00
27 28 1.338769 ACATTAACCAGACGAGGCACC 60.339 52.381 0.00 0.00 0.00 5.01
28 29 2.094762 ACATTAACCAGACGAGGCAC 57.905 50.000 0.00 0.00 0.00 5.01
29 30 2.811431 CAAACATTAACCAGACGAGGCA 59.189 45.455 0.00 0.00 0.00 4.75
30 31 2.812011 ACAAACATTAACCAGACGAGGC 59.188 45.455 0.00 0.00 0.00 4.70
31 32 4.062293 TCACAAACATTAACCAGACGAGG 58.938 43.478 0.00 0.00 0.00 4.63
32 33 4.509970 TGTCACAAACATTAACCAGACGAG 59.490 41.667 0.00 0.00 31.20 4.18
33 34 4.443621 TGTCACAAACATTAACCAGACGA 58.556 39.130 0.00 0.00 31.20 4.20
34 35 4.804608 TGTCACAAACATTAACCAGACG 57.195 40.909 0.00 0.00 31.20 4.18
35 36 6.636850 GTCATTGTCACAAACATTAACCAGAC 59.363 38.462 0.00 0.00 37.82 3.51
36 37 6.319911 TGTCATTGTCACAAACATTAACCAGA 59.680 34.615 0.00 0.00 37.82 3.86
37 38 6.502652 TGTCATTGTCACAAACATTAACCAG 58.497 36.000 0.00 0.00 37.82 4.00
38 39 6.456795 TGTCATTGTCACAAACATTAACCA 57.543 33.333 0.00 0.00 37.82 3.67
39 40 6.365789 CCATGTCATTGTCACAAACATTAACC 59.634 38.462 5.27 0.00 37.82 2.85
40 41 7.114811 GTCCATGTCATTGTCACAAACATTAAC 59.885 37.037 5.27 3.97 37.82 2.01
41 42 7.144661 GTCCATGTCATTGTCACAAACATTAA 58.855 34.615 5.27 0.00 37.82 1.40
42 43 6.294453 GGTCCATGTCATTGTCACAAACATTA 60.294 38.462 5.27 0.00 37.82 1.90
43 44 5.509501 GGTCCATGTCATTGTCACAAACATT 60.510 40.000 5.27 0.00 37.82 2.71
44 45 4.022068 GGTCCATGTCATTGTCACAAACAT 60.022 41.667 2.48 2.48 37.82 2.71
45 46 3.317711 GGTCCATGTCATTGTCACAAACA 59.682 43.478 0.00 0.00 35.59 2.83
46 47 3.317711 TGGTCCATGTCATTGTCACAAAC 59.682 43.478 0.00 0.00 0.00 2.93
47 48 3.560105 TGGTCCATGTCATTGTCACAAA 58.440 40.909 0.00 0.00 0.00 2.83
48 49 3.220674 TGGTCCATGTCATTGTCACAA 57.779 42.857 0.00 0.00 0.00 3.33
49 50 2.947127 TGGTCCATGTCATTGTCACA 57.053 45.000 0.00 0.00 0.00 3.58
50 51 3.770263 CATGGTCCATGTCATTGTCAC 57.230 47.619 21.98 0.00 37.12 3.67
60 61 1.939974 CGTAGTCCACATGGTCCATG 58.060 55.000 27.31 27.31 46.18 3.66
61 62 0.178068 GCGTAGTCCACATGGTCCAT 59.822 55.000 0.00 0.00 36.34 3.41
62 63 1.594833 GCGTAGTCCACATGGTCCA 59.405 57.895 0.00 0.00 36.34 4.02
63 64 1.518572 CGCGTAGTCCACATGGTCC 60.519 63.158 0.00 0.00 36.34 4.46
64 65 0.452987 TACGCGTAGTCCACATGGTC 59.547 55.000 16.41 0.00 36.34 4.02
65 66 0.889994 TTACGCGTAGTCCACATGGT 59.110 50.000 19.61 0.00 36.34 3.55
66 67 1.274596 GTTACGCGTAGTCCACATGG 58.725 55.000 19.61 0.00 0.00 3.66
67 68 1.985334 TGTTACGCGTAGTCCACATG 58.015 50.000 19.61 0.00 0.00 3.21
68 69 2.728690 TTGTTACGCGTAGTCCACAT 57.271 45.000 19.61 0.00 0.00 3.21
69 70 2.505628 TTTGTTACGCGTAGTCCACA 57.494 45.000 19.61 17.33 0.00 4.17
70 71 3.423907 CCATTTTGTTACGCGTAGTCCAC 60.424 47.826 19.61 14.86 0.00 4.02
71 72 2.737783 CCATTTTGTTACGCGTAGTCCA 59.262 45.455 19.61 14.19 0.00 4.02
72 73 2.738314 ACCATTTTGTTACGCGTAGTCC 59.262 45.455 19.61 11.78 0.00 3.85
73 74 4.394099 AACCATTTTGTTACGCGTAGTC 57.606 40.909 19.61 16.24 0.00 2.59
74 75 5.870978 AGATAACCATTTTGTTACGCGTAGT 59.129 36.000 19.61 8.34 33.78 2.73
75 76 6.340537 AGATAACCATTTTGTTACGCGTAG 57.659 37.500 19.61 7.67 33.78 3.51
76 77 7.009448 CACTAGATAACCATTTTGTTACGCGTA 59.991 37.037 16.41 16.41 33.78 4.42
77 78 5.870978 ACTAGATAACCATTTTGTTACGCGT 59.129 36.000 19.17 19.17 33.78 6.01
78 79 6.182634 CACTAGATAACCATTTTGTTACGCG 58.817 40.000 3.53 3.53 33.78 6.01
79 80 6.314400 TCCACTAGATAACCATTTTGTTACGC 59.686 38.462 0.00 0.00 33.78 4.42
80 81 7.837202 TCCACTAGATAACCATTTTGTTACG 57.163 36.000 0.00 0.00 33.78 3.18
81 82 9.614792 AGATCCACTAGATAACCATTTTGTTAC 57.385 33.333 0.00 0.00 34.42 2.50
83 84 9.533831 AAAGATCCACTAGATAACCATTTTGTT 57.466 29.630 0.00 0.00 34.42 2.83
84 85 9.178758 GAAAGATCCACTAGATAACCATTTTGT 57.821 33.333 0.00 0.00 34.42 2.83
85 86 9.401058 AGAAAGATCCACTAGATAACCATTTTG 57.599 33.333 0.00 0.00 34.42 2.44
86 87 9.401058 CAGAAAGATCCACTAGATAACCATTTT 57.599 33.333 0.00 0.00 34.42 1.82
87 88 7.500559 GCAGAAAGATCCACTAGATAACCATTT 59.499 37.037 0.00 0.00 34.42 2.32
88 89 6.995091 GCAGAAAGATCCACTAGATAACCATT 59.005 38.462 0.00 0.00 34.42 3.16
89 90 6.328672 AGCAGAAAGATCCACTAGATAACCAT 59.671 38.462 0.00 0.00 34.42 3.55
90 91 5.663106 AGCAGAAAGATCCACTAGATAACCA 59.337 40.000 0.00 0.00 34.42 3.67
91 92 5.988561 CAGCAGAAAGATCCACTAGATAACC 59.011 44.000 0.00 0.00 34.42 2.85
92 93 5.465056 GCAGCAGAAAGATCCACTAGATAAC 59.535 44.000 0.00 0.00 34.42 1.89
93 94 5.605534 GCAGCAGAAAGATCCACTAGATAA 58.394 41.667 0.00 0.00 34.42 1.75
94 95 4.261783 CGCAGCAGAAAGATCCACTAGATA 60.262 45.833 0.00 0.00 34.42 1.98
95 96 3.492309 CGCAGCAGAAAGATCCACTAGAT 60.492 47.826 0.00 0.00 38.17 1.98
96 97 2.159184 CGCAGCAGAAAGATCCACTAGA 60.159 50.000 0.00 0.00 0.00 2.43
97 98 2.200067 CGCAGCAGAAAGATCCACTAG 58.800 52.381 0.00 0.00 0.00 2.57
98 99 2.299993 CGCAGCAGAAAGATCCACTA 57.700 50.000 0.00 0.00 0.00 2.74
99 100 3.149899 CGCAGCAGAAAGATCCACT 57.850 52.632 0.00 0.00 0.00 4.00
113 114 2.831333 AGAGTCAGAAATATGGCGCAG 58.169 47.619 10.83 0.00 0.00 5.18
114 115 2.988010 AGAGTCAGAAATATGGCGCA 57.012 45.000 10.83 0.00 0.00 6.09
115 116 4.310769 ACATAGAGTCAGAAATATGGCGC 58.689 43.478 0.00 0.00 31.34 6.53
116 117 6.851222 AAACATAGAGTCAGAAATATGGCG 57.149 37.500 0.00 0.00 31.34 5.69
117 118 9.547753 TCTTAAACATAGAGTCAGAAATATGGC 57.452 33.333 0.00 0.00 31.34 4.40
124 125 8.730680 GCCAAAATCTTAAACATAGAGTCAGAA 58.269 33.333 0.00 0.00 0.00 3.02
125 126 8.103305 AGCCAAAATCTTAAACATAGAGTCAGA 58.897 33.333 0.00 0.00 0.00 3.27
126 127 8.273780 AGCCAAAATCTTAAACATAGAGTCAG 57.726 34.615 0.00 0.00 0.00 3.51
127 128 8.635765 AAGCCAAAATCTTAAACATAGAGTCA 57.364 30.769 0.00 0.00 0.00 3.41
128 129 9.561270 GAAAGCCAAAATCTTAAACATAGAGTC 57.439 33.333 0.00 0.00 0.00 3.36
129 130 9.301897 AGAAAGCCAAAATCTTAAACATAGAGT 57.698 29.630 0.00 0.00 0.00 3.24
131 132 9.912634 CAAGAAAGCCAAAATCTTAAACATAGA 57.087 29.630 0.00 0.00 32.38 1.98
132 133 8.650714 GCAAGAAAGCCAAAATCTTAAACATAG 58.349 33.333 0.00 0.00 32.38 2.23
133 134 8.147058 TGCAAGAAAGCCAAAATCTTAAACATA 58.853 29.630 0.00 0.00 32.38 2.29
134 135 6.991531 TGCAAGAAAGCCAAAATCTTAAACAT 59.008 30.769 0.00 0.00 32.38 2.71
135 136 6.344500 TGCAAGAAAGCCAAAATCTTAAACA 58.656 32.000 0.00 0.00 32.38 2.83
136 137 6.564686 GCTGCAAGAAAGCCAAAATCTTAAAC 60.565 38.462 0.00 0.00 34.07 2.01
137 138 5.466393 GCTGCAAGAAAGCCAAAATCTTAAA 59.534 36.000 0.00 0.00 34.07 1.52
138 139 4.990426 GCTGCAAGAAAGCCAAAATCTTAA 59.010 37.500 0.00 0.00 34.07 1.85
139 140 4.039004 TGCTGCAAGAAAGCCAAAATCTTA 59.961 37.500 0.00 0.00 40.06 2.10
140 141 3.181463 TGCTGCAAGAAAGCCAAAATCTT 60.181 39.130 0.00 0.00 40.06 2.40
141 142 2.366266 TGCTGCAAGAAAGCCAAAATCT 59.634 40.909 0.00 0.00 40.06 2.40
142 143 2.735134 CTGCTGCAAGAAAGCCAAAATC 59.265 45.455 3.02 0.00 40.06 2.17
143 144 2.762745 CTGCTGCAAGAAAGCCAAAAT 58.237 42.857 3.02 0.00 40.06 1.82
144 145 1.807377 GCTGCTGCAAGAAAGCCAAAA 60.807 47.619 11.11 0.00 38.72 2.44
145 146 0.249573 GCTGCTGCAAGAAAGCCAAA 60.250 50.000 11.11 0.00 38.72 3.28
146 147 1.364901 GCTGCTGCAAGAAAGCCAA 59.635 52.632 11.11 0.00 38.72 4.52
147 148 3.045142 GCTGCTGCAAGAAAGCCA 58.955 55.556 11.11 0.00 38.72 4.75
157 158 3.431725 GGGTACCGTTGCTGCTGC 61.432 66.667 8.89 8.89 40.86 5.25
211 213 3.247173 GCCACTCGAAGATCATCAATCAC 59.753 47.826 0.00 0.00 36.79 3.06
233 235 2.670934 AAGCGACTTGGCAGCCTG 60.671 61.111 14.15 8.25 34.64 4.85
340 342 7.187824 AGTGCATGAAGAGAAAATAGGTCTA 57.812 36.000 0.00 0.00 0.00 2.59
372 374 3.192001 AGCAAGCACCATATTCACACAAG 59.808 43.478 0.00 0.00 0.00 3.16
424 426 6.036577 ACCGCAAAACATTTATCCTTTCAT 57.963 33.333 0.00 0.00 0.00 2.57
437 439 5.752892 TTATGTAGTTCAACCGCAAAACA 57.247 34.783 0.00 0.00 0.00 2.83
498 504 9.973246 CTTAAGAGTTTTTCCTTTTCTTTTTGC 57.027 29.630 0.00 0.00 31.19 3.68
562 571 1.997928 GCCGCTGCATCCTTTTCTCC 61.998 60.000 0.00 0.00 37.47 3.71
592 602 3.954258 TCTTGCTATCTCTCACCGAATCA 59.046 43.478 0.00 0.00 0.00 2.57
627 650 2.176546 CCCACTCGTTGCATTGCG 59.823 61.111 3.84 0.00 0.00 4.85
678 701 2.300437 ACTTCCTCTTGGTTTCTCCTCG 59.700 50.000 0.00 0.00 37.07 4.63
684 707 2.218603 TGCGAACTTCCTCTTGGTTTC 58.781 47.619 0.00 0.00 34.23 2.78
705 728 3.692791 GTGTTGTCACAGGAAAGTTCC 57.307 47.619 1.53 1.53 43.37 3.62
719 742 0.738063 TCGCACGTGTCTTGTGTTGT 60.738 50.000 18.38 0.00 39.53 3.32
745 768 2.947118 TTCGCTCGCACGTGTCTTGT 62.947 55.000 18.38 0.00 0.00 3.16
746 769 2.300066 TTCGCTCGCACGTGTCTTG 61.300 57.895 18.38 5.19 0.00 3.02
747 770 2.027024 TTCGCTCGCACGTGTCTT 59.973 55.556 18.38 0.00 0.00 3.01
748 771 2.679132 AAGTTCGCTCGCACGTGTCT 62.679 55.000 18.38 0.83 0.00 3.41
749 772 2.300787 AAGTTCGCTCGCACGTGTC 61.301 57.895 18.38 8.63 0.00 3.67
750 773 2.279252 AAGTTCGCTCGCACGTGT 60.279 55.556 18.38 0.00 0.00 4.49
751 774 2.168621 CAAGTTCGCTCGCACGTG 59.831 61.111 12.28 12.28 0.00 4.49
752 775 2.279252 ACAAGTTCGCTCGCACGT 60.279 55.556 0.00 0.00 0.00 4.49
753 776 2.465920 GACAAGTTCGCTCGCACG 59.534 61.111 0.00 0.00 0.00 5.34
754 777 0.388134 TAGGACAAGTTCGCTCGCAC 60.388 55.000 0.00 0.00 0.00 5.34
755 778 0.530744 ATAGGACAAGTTCGCTCGCA 59.469 50.000 0.00 0.00 0.00 5.10
756 779 1.641577 AATAGGACAAGTTCGCTCGC 58.358 50.000 0.00 0.00 0.00 5.03
757 780 3.512680 AGAAATAGGACAAGTTCGCTCG 58.487 45.455 0.00 0.00 0.00 5.03
758 781 3.866327 GGAGAAATAGGACAAGTTCGCTC 59.134 47.826 0.00 0.00 0.00 5.03
759 782 3.260884 TGGAGAAATAGGACAAGTTCGCT 59.739 43.478 0.00 0.00 0.00 4.93
760 783 3.371285 GTGGAGAAATAGGACAAGTTCGC 59.629 47.826 0.00 0.00 0.00 4.70
761 784 3.612860 CGTGGAGAAATAGGACAAGTTCG 59.387 47.826 0.00 0.00 0.00 3.95
762 785 4.626172 GTCGTGGAGAAATAGGACAAGTTC 59.374 45.833 0.00 0.00 0.00 3.01
802 825 1.612395 CCTCCTCACTCCTCACTGGC 61.612 65.000 0.00 0.00 35.26 4.85
835 858 3.614092 TGCTTTCTTCCCAAGCTATCTG 58.386 45.455 6.24 0.00 45.90 2.90
869 892 0.948623 CGTGGACGTGCTTTCATGGA 60.949 55.000 8.99 0.00 33.54 3.41
873 896 2.970324 GGCGTGGACGTGCTTTCA 60.970 61.111 8.99 0.00 42.22 2.69
948 974 0.467384 ACCGAGGAGATGGATGCTTG 59.533 55.000 0.00 0.00 0.00 4.01
979 1005 2.544359 CTCGCGTGTGTTCGTTGG 59.456 61.111 5.77 0.00 0.00 3.77
1000 1028 2.742760 TCTCGCTCGCTCACTCGT 60.743 61.111 0.00 0.00 0.00 4.18
1002 1030 1.087202 TCTCTCTCGCTCGCTCACTC 61.087 60.000 0.00 0.00 0.00 3.51
1003 1031 1.078778 TCTCTCTCGCTCGCTCACT 60.079 57.895 0.00 0.00 0.00 3.41
1004 1032 1.087202 TCTCTCTCTCGCTCGCTCAC 61.087 60.000 0.00 0.00 0.00 3.51
1005 1033 0.391793 TTCTCTCTCTCGCTCGCTCA 60.392 55.000 0.00 0.00 0.00 4.26
1199 1227 0.898789 TGACAACTCGGAGGGAGGTC 60.899 60.000 10.23 10.88 42.13 3.85
1227 1255 0.691332 GGAGGGAGGTCGGACTTTTT 59.309 55.000 8.23 0.00 0.00 1.94
1228 1256 0.473117 TGGAGGGAGGTCGGACTTTT 60.473 55.000 8.23 0.00 0.00 2.27
1229 1257 0.252742 ATGGAGGGAGGTCGGACTTT 60.253 55.000 8.23 0.00 0.00 2.66
1230 1258 0.688087 GATGGAGGGAGGTCGGACTT 60.688 60.000 8.23 0.00 0.00 3.01
1231 1259 1.075896 GATGGAGGGAGGTCGGACT 60.076 63.158 8.23 0.00 0.00 3.85
1232 1260 2.134933 GGATGGAGGGAGGTCGGAC 61.135 68.421 0.00 0.00 0.00 4.79
1233 1261 2.282446 GGATGGAGGGAGGTCGGA 59.718 66.667 0.00 0.00 0.00 4.55
1234 1262 2.844839 GGGATGGAGGGAGGTCGG 60.845 72.222 0.00 0.00 0.00 4.79
1235 1263 2.136878 CAGGGATGGAGGGAGGTCG 61.137 68.421 0.00 0.00 0.00 4.79
1236 1264 2.447714 GCAGGGATGGAGGGAGGTC 61.448 68.421 0.00 0.00 0.00 3.85
1237 1265 2.367512 GCAGGGATGGAGGGAGGT 60.368 66.667 0.00 0.00 0.00 3.85
1238 1266 3.174265 GGCAGGGATGGAGGGAGG 61.174 72.222 0.00 0.00 0.00 4.30
1239 1267 3.554342 CGGCAGGGATGGAGGGAG 61.554 72.222 0.00 0.00 0.00 4.30
1242 1270 4.247380 GAGCGGCAGGGATGGAGG 62.247 72.222 1.45 0.00 0.00 4.30
1243 1271 4.247380 GGAGCGGCAGGGATGGAG 62.247 72.222 1.45 0.00 0.00 3.86
1259 1287 2.028112 TGAAGAGAAACTCATGGACGGG 60.028 50.000 0.00 0.00 32.06 5.28
1349 1397 7.831753 TCTCGAGACTAGTCAATCAAAGATTT 58.168 34.615 24.44 0.00 0.00 2.17
1433 1481 1.048601 AACGAACCAGGAAGCTCAGA 58.951 50.000 0.00 0.00 0.00 3.27
1444 1492 3.277652 GAGTGGTCGAAACGAACCA 57.722 52.632 6.73 8.55 43.57 3.67
1489 1537 8.062536 AGGTAGTGAGATAGTAAGATTCCAACT 58.937 37.037 0.00 0.00 0.00 3.16
1520 1570 5.586339 TGATGTTGAATGCAAGAAAAACGA 58.414 33.333 0.00 0.00 34.01 3.85
1522 1572 5.234757 TGCTGATGTTGAATGCAAGAAAAAC 59.765 36.000 0.00 0.00 34.01 2.43
1523 1573 5.358090 TGCTGATGTTGAATGCAAGAAAAA 58.642 33.333 0.00 0.00 34.01 1.94
1524 1574 4.946445 TGCTGATGTTGAATGCAAGAAAA 58.054 34.783 0.00 0.00 34.01 2.29
1604 1658 0.595567 CATTGCAGCCACACACACAC 60.596 55.000 0.00 0.00 0.00 3.82
1605 1659 1.734748 CATTGCAGCCACACACACA 59.265 52.632 0.00 0.00 0.00 3.72
1609 1663 1.290639 CATGCATTGCAGCCACACA 59.709 52.632 17.52 0.00 43.65 3.72
1622 1676 2.108514 GCTTCGCCAGCTACATGCA 61.109 57.895 0.00 0.00 46.27 3.96
1780 1834 2.107546 ACGGTGACCACGTCAACC 59.892 61.111 1.11 4.34 46.36 3.77
1783 1837 4.595538 GCCACGGTGACCACGTCA 62.596 66.667 10.28 0.00 43.58 4.35
2065 2119 1.493950 CGAGGTTCATGCATCGCTCC 61.494 60.000 0.00 0.00 35.95 4.70
2071 2125 0.532573 AGTCGTCGAGGTTCATGCAT 59.467 50.000 4.85 0.00 0.00 3.96
2072 2126 1.135489 GTAGTCGTCGAGGTTCATGCA 60.135 52.381 4.85 0.00 0.00 3.96
2078 2132 1.538950 GGTGAAGTAGTCGTCGAGGTT 59.461 52.381 4.85 0.00 0.00 3.50
2160 2214 0.389166 GAAGTCCAGCACAGTCTCGG 60.389 60.000 0.00 0.00 0.00 4.63
2262 2316 3.004839 GCATCATGCTGCATCTGATTCTT 59.995 43.478 16.39 0.00 40.96 2.52
2275 2335 1.134818 CCACTTGCATTGCATCATGCT 60.135 47.619 20.89 2.02 45.31 3.79
2329 2390 1.191944 CCATCGTCACTTCGATCGTG 58.808 55.000 15.94 11.74 46.64 4.35
2399 2460 6.254976 TGGAATAGGAATAGGAGGGGAATA 57.745 41.667 0.00 0.00 0.00 1.75
2539 2667 4.510571 ACTAACACAACGGACTCAGTTTT 58.489 39.130 0.00 0.00 0.00 2.43
2542 2670 2.691526 TGACTAACACAACGGACTCAGT 59.308 45.455 0.00 0.00 0.00 3.41
2550 2678 5.237779 AGGTGGTAAATTGACTAACACAACG 59.762 40.000 6.24 0.00 38.49 4.10
2552 2680 6.829298 TCAAGGTGGTAAATTGACTAACACAA 59.171 34.615 6.24 0.00 38.49 3.33
2568 2696 7.182060 ACCTATTCATTAATTGTCAAGGTGGT 58.818 34.615 5.78 0.00 33.38 4.16
2569 2697 7.645058 ACCTATTCATTAATTGTCAAGGTGG 57.355 36.000 5.78 0.00 33.38 4.61
2570 2698 8.739039 TCAACCTATTCATTAATTGTCAAGGTG 58.261 33.333 6.91 0.00 34.23 4.00
2571 2699 8.877864 TCAACCTATTCATTAATTGTCAAGGT 57.122 30.769 0.00 0.00 34.91 3.50
2584 2712 9.739276 TGTGAGAATAACTTTCAACCTATTCAT 57.261 29.630 0.00 0.00 34.56 2.57
2585 2713 9.567776 TTGTGAGAATAACTTTCAACCTATTCA 57.432 29.630 0.00 0.00 34.56 2.57
2611 2739 0.179070 ACGGCCGGCATTTTGTTTTT 60.179 45.000 31.76 0.00 0.00 1.94
2612 2740 0.674534 TACGGCCGGCATTTTGTTTT 59.325 45.000 31.76 5.83 0.00 2.43
2613 2741 0.892063 ATACGGCCGGCATTTTGTTT 59.108 45.000 31.76 10.17 0.00 2.83
2614 2742 0.172352 CATACGGCCGGCATTTTGTT 59.828 50.000 31.76 7.29 0.00 2.83
2615 2743 0.678366 TCATACGGCCGGCATTTTGT 60.678 50.000 31.76 19.36 0.00 2.83
2616 2744 0.667993 ATCATACGGCCGGCATTTTG 59.332 50.000 31.76 19.52 0.00 2.44
2617 2745 1.398692 AATCATACGGCCGGCATTTT 58.601 45.000 31.76 14.38 0.00 1.82
2618 2746 1.398692 AAATCATACGGCCGGCATTT 58.601 45.000 31.76 20.53 0.00 2.32
2619 2747 2.151202 CTAAATCATACGGCCGGCATT 58.849 47.619 31.76 17.00 0.00 3.56
2620 2748 1.346395 TCTAAATCATACGGCCGGCAT 59.654 47.619 31.76 19.42 0.00 4.40
2621 2749 0.753867 TCTAAATCATACGGCCGGCA 59.246 50.000 31.76 17.80 0.00 5.69
2649 2777 0.570272 CAAAAAGCCAACGCACGAAC 59.430 50.000 0.00 0.00 37.52 3.95
2675 2803 6.888105 AGCCAAGATTTTCTCAAAGGAAAAA 58.112 32.000 6.50 0.00 44.71 1.94
2676 2804 6.484364 AGCCAAGATTTTCTCAAAGGAAAA 57.516 33.333 5.13 5.13 45.32 2.29
2677 2805 6.549364 TGTAGCCAAGATTTTCTCAAAGGAAA 59.451 34.615 0.00 0.00 33.98 3.13
2678 2806 6.068010 TGTAGCCAAGATTTTCTCAAAGGAA 58.932 36.000 0.00 0.00 0.00 3.36
2679 2807 5.630121 TGTAGCCAAGATTTTCTCAAAGGA 58.370 37.500 0.00 0.00 0.00 3.36
2680 2808 5.964958 TGTAGCCAAGATTTTCTCAAAGG 57.035 39.130 0.00 0.00 0.00 3.11
2682 2810 9.859427 CAAATATGTAGCCAAGATTTTCTCAAA 57.141 29.630 0.00 0.00 0.00 2.69
2683 2811 8.469200 CCAAATATGTAGCCAAGATTTTCTCAA 58.531 33.333 0.00 0.00 0.00 3.02
2684 2812 7.833682 TCCAAATATGTAGCCAAGATTTTCTCA 59.166 33.333 0.00 0.00 0.00 3.27
2685 2813 8.225603 TCCAAATATGTAGCCAAGATTTTCTC 57.774 34.615 0.00 0.00 0.00 2.87
2686 2814 8.593945 TTCCAAATATGTAGCCAAGATTTTCT 57.406 30.769 0.00 0.00 0.00 2.52
2690 2818 8.950210 CGATATTCCAAATATGTAGCCAAGATT 58.050 33.333 0.00 0.00 0.00 2.40
2691 2819 7.554118 CCGATATTCCAAATATGTAGCCAAGAT 59.446 37.037 0.00 0.00 0.00 2.40
2692 2820 6.878923 CCGATATTCCAAATATGTAGCCAAGA 59.121 38.462 0.00 0.00 0.00 3.02
2693 2821 6.878923 TCCGATATTCCAAATATGTAGCCAAG 59.121 38.462 0.00 0.00 0.00 3.61
2694 2822 6.653320 GTCCGATATTCCAAATATGTAGCCAA 59.347 38.462 0.00 0.00 0.00 4.52
2695 2823 6.170506 GTCCGATATTCCAAATATGTAGCCA 58.829 40.000 0.00 0.00 0.00 4.75
2696 2824 5.291128 CGTCCGATATTCCAAATATGTAGCC 59.709 44.000 0.00 0.00 0.00 3.93
2697 2825 5.867716 ACGTCCGATATTCCAAATATGTAGC 59.132 40.000 0.00 0.00 0.00 3.58
2698 2826 6.310467 CCACGTCCGATATTCCAAATATGTAG 59.690 42.308 0.00 0.00 0.00 2.74
2699 2827 6.160684 CCACGTCCGATATTCCAAATATGTA 58.839 40.000 0.00 0.00 0.00 2.29
2700 2828 4.994852 CCACGTCCGATATTCCAAATATGT 59.005 41.667 0.00 0.00 0.00 2.29
2701 2829 4.391830 CCCACGTCCGATATTCCAAATATG 59.608 45.833 0.00 0.00 0.00 1.78
2702 2830 4.564821 CCCCACGTCCGATATTCCAAATAT 60.565 45.833 0.00 0.00 0.00 1.28
2703 2831 3.244284 CCCCACGTCCGATATTCCAAATA 60.244 47.826 0.00 0.00 0.00 1.40
2704 2832 2.486548 CCCCACGTCCGATATTCCAAAT 60.487 50.000 0.00 0.00 0.00 2.32
2705 2833 1.134340 CCCCACGTCCGATATTCCAAA 60.134 52.381 0.00 0.00 0.00 3.28
2706 2834 0.466543 CCCCACGTCCGATATTCCAA 59.533 55.000 0.00 0.00 0.00 3.53
2707 2835 2.035237 GCCCCACGTCCGATATTCCA 62.035 60.000 0.00 0.00 0.00 3.53
2708 2836 1.301479 GCCCCACGTCCGATATTCC 60.301 63.158 0.00 0.00 0.00 3.01
2709 2837 0.600255 CTGCCCCACGTCCGATATTC 60.600 60.000 0.00 0.00 0.00 1.75
2710 2838 1.445942 CTGCCCCACGTCCGATATT 59.554 57.895 0.00 0.00 0.00 1.28
2711 2839 3.138625 CTGCCCCACGTCCGATAT 58.861 61.111 0.00 0.00 0.00 1.63
2712 2840 3.845259 GCTGCCCCACGTCCGATA 61.845 66.667 0.00 0.00 0.00 2.92
2720 2848 4.729918 CAGGTCCTGCTGCCCCAC 62.730 72.222 5.79 0.00 0.00 4.61
2722 2850 3.927481 GAACAGGTCCTGCTGCCCC 62.927 68.421 19.40 0.00 34.37 5.80
2723 2851 2.360475 GAACAGGTCCTGCTGCCC 60.360 66.667 19.40 0.11 34.37 5.36
2724 2852 2.743928 CGAACAGGTCCTGCTGCC 60.744 66.667 19.40 4.73 34.37 4.85
2725 2853 2.743928 CCGAACAGGTCCTGCTGC 60.744 66.667 19.40 7.42 34.37 5.25
2726 2854 2.743928 GCCGAACAGGTCCTGCTG 60.744 66.667 19.40 8.59 43.70 4.41
2727 2855 4.021925 GGCCGAACAGGTCCTGCT 62.022 66.667 19.40 6.65 43.70 4.24
2728 2856 4.329545 TGGCCGAACAGGTCCTGC 62.330 66.667 19.40 4.07 46.38 4.85
2729 2857 2.358737 GTGGCCGAACAGGTCCTG 60.359 66.667 17.88 17.88 46.38 3.86
2730 2858 2.526873 AGTGGCCGAACAGGTCCT 60.527 61.111 0.00 0.00 46.38 3.85
2731 2859 2.358737 CAGTGGCCGAACAGGTCC 60.359 66.667 0.00 0.00 46.38 4.46
2733 2861 3.953775 CCCAGTGGCCGAACAGGT 61.954 66.667 2.61 0.00 43.70 4.00
2743 2871 1.915141 AAGAGAACAATGCCCAGTGG 58.085 50.000 0.63 0.63 0.00 4.00
2744 2872 2.624838 ACAAAGAGAACAATGCCCAGTG 59.375 45.455 0.00 0.00 0.00 3.66
2745 2873 2.949447 ACAAAGAGAACAATGCCCAGT 58.051 42.857 0.00 0.00 0.00 4.00
2746 2874 4.038402 AGAAACAAAGAGAACAATGCCCAG 59.962 41.667 0.00 0.00 0.00 4.45
2747 2875 3.960102 AGAAACAAAGAGAACAATGCCCA 59.040 39.130 0.00 0.00 0.00 5.36
2748 2876 4.590850 AGAAACAAAGAGAACAATGCCC 57.409 40.909 0.00 0.00 0.00 5.36
2749 2877 6.145535 CAGTAGAAACAAAGAGAACAATGCC 58.854 40.000 0.00 0.00 0.00 4.40
2750 2878 6.145535 CCAGTAGAAACAAAGAGAACAATGC 58.854 40.000 0.00 0.00 0.00 3.56
2751 2879 6.145535 GCCAGTAGAAACAAAGAGAACAATG 58.854 40.000 0.00 0.00 0.00 2.82
2752 2880 5.827797 TGCCAGTAGAAACAAAGAGAACAAT 59.172 36.000 0.00 0.00 0.00 2.71
2753 2881 5.189928 TGCCAGTAGAAACAAAGAGAACAA 58.810 37.500 0.00 0.00 0.00 2.83
2754 2882 4.776349 TGCCAGTAGAAACAAAGAGAACA 58.224 39.130 0.00 0.00 0.00 3.18
2755 2883 5.751243 TTGCCAGTAGAAACAAAGAGAAC 57.249 39.130 0.00 0.00 0.00 3.01
2756 2884 6.601613 TCTTTTGCCAGTAGAAACAAAGAGAA 59.398 34.615 0.00 0.00 33.87 2.87
2757 2885 6.119536 TCTTTTGCCAGTAGAAACAAAGAGA 58.880 36.000 0.00 0.00 33.87 3.10
2758 2886 6.377327 TCTTTTGCCAGTAGAAACAAAGAG 57.623 37.500 0.00 0.00 33.87 2.85
2759 2887 5.221048 GCTCTTTTGCCAGTAGAAACAAAGA 60.221 40.000 0.00 0.00 33.87 2.52
3181 3320 7.870954 CACCCTTAATTGGTACTTTCCTTTTTC 59.129 37.037 0.00 0.00 33.84 2.29
3257 3397 8.190784 CGCCCAGAAAATTTTGTAGATTCTAAT 58.809 33.333 8.47 0.00 0.00 1.73
3364 3525 5.238583 CGAGGGGTTATCCTTCATGTATTC 58.761 45.833 0.00 0.00 41.30 1.75
3369 3530 1.873903 CGCGAGGGGTTATCCTTCATG 60.874 57.143 0.00 0.00 41.30 3.07
3370 3531 0.393077 CGCGAGGGGTTATCCTTCAT 59.607 55.000 0.00 0.00 41.30 2.57
3371 3532 0.974010 ACGCGAGGGGTTATCCTTCA 60.974 55.000 15.93 0.00 41.30 3.02
3372 3533 0.529992 CACGCGAGGGGTTATCCTTC 60.530 60.000 15.93 0.00 37.25 3.46
3373 3534 1.262640 ACACGCGAGGGGTTATCCTT 61.263 55.000 15.93 0.00 40.46 3.36
3374 3535 1.673808 GACACGCGAGGGGTTATCCT 61.674 60.000 15.93 0.00 40.46 3.24
3375 3536 1.227176 GACACGCGAGGGGTTATCC 60.227 63.158 15.93 0.00 40.46 2.59
3376 3537 1.001597 CTAGACACGCGAGGGGTTATC 60.002 57.143 15.93 0.00 40.46 1.75
3377 3538 1.030457 CTAGACACGCGAGGGGTTAT 58.970 55.000 15.93 1.43 40.46 1.89
3378 3539 1.660560 GCTAGACACGCGAGGGGTTA 61.661 60.000 15.93 0.00 40.46 2.85
3379 3540 3.003113 GCTAGACACGCGAGGGGTT 62.003 63.158 15.93 0.00 40.46 4.11
3380 3541 3.450115 GCTAGACACGCGAGGGGT 61.450 66.667 15.93 4.97 40.46 4.95
3381 3542 2.298158 AATGCTAGACACGCGAGGGG 62.298 60.000 15.93 1.08 40.46 4.79
3382 3543 0.384309 TAATGCTAGACACGCGAGGG 59.616 55.000 15.93 4.07 43.28 4.30
3383 3544 1.065701 AGTAATGCTAGACACGCGAGG 59.934 52.381 15.93 7.12 0.00 4.63
3384 3545 2.376956 GAGTAATGCTAGACACGCGAG 58.623 52.381 15.93 7.88 0.00 5.03
3385 3546 1.267882 CGAGTAATGCTAGACACGCGA 60.268 52.381 15.93 0.00 36.49 5.87
3386 3547 1.113253 CGAGTAATGCTAGACACGCG 58.887 55.000 3.53 3.53 0.00 6.01
3387 3548 2.190325 ACGAGTAATGCTAGACACGC 57.810 50.000 0.00 0.00 33.68 5.34
3388 3549 3.558829 TCCTACGAGTAATGCTAGACACG 59.441 47.826 0.00 0.00 36.02 4.49
3389 3550 5.453648 CATCCTACGAGTAATGCTAGACAC 58.546 45.833 0.00 0.00 0.00 3.67
3390 3551 4.519350 CCATCCTACGAGTAATGCTAGACA 59.481 45.833 0.00 0.00 0.00 3.41
3391 3552 4.082679 CCCATCCTACGAGTAATGCTAGAC 60.083 50.000 0.00 0.00 0.00 2.59
3392 3553 4.079970 CCCATCCTACGAGTAATGCTAGA 58.920 47.826 0.00 0.00 0.00 2.43
3393 3554 3.367498 GCCCATCCTACGAGTAATGCTAG 60.367 52.174 0.00 0.00 0.00 3.42
3394 3555 2.561419 GCCCATCCTACGAGTAATGCTA 59.439 50.000 0.00 0.00 0.00 3.49
3395 3556 1.344763 GCCCATCCTACGAGTAATGCT 59.655 52.381 0.00 0.00 0.00 3.79
3396 3557 1.344763 AGCCCATCCTACGAGTAATGC 59.655 52.381 0.00 0.00 0.00 3.56
3397 3558 3.181465 ACAAGCCCATCCTACGAGTAATG 60.181 47.826 0.00 0.00 0.00 1.90
3398 3559 3.039011 ACAAGCCCATCCTACGAGTAAT 58.961 45.455 0.00 0.00 0.00 1.89
3399 3560 2.429610 GACAAGCCCATCCTACGAGTAA 59.570 50.000 0.00 0.00 0.00 2.24
3400 3561 2.029623 GACAAGCCCATCCTACGAGTA 58.970 52.381 0.00 0.00 0.00 2.59
3401 3562 0.824759 GACAAGCCCATCCTACGAGT 59.175 55.000 0.00 0.00 0.00 4.18
3402 3563 1.115467 AGACAAGCCCATCCTACGAG 58.885 55.000 0.00 0.00 0.00 4.18
3403 3564 2.447408 TAGACAAGCCCATCCTACGA 57.553 50.000 0.00 0.00 0.00 3.43
3404 3565 3.753294 AATAGACAAGCCCATCCTACG 57.247 47.619 0.00 0.00 0.00 3.51
3405 3566 3.565902 GCAAATAGACAAGCCCATCCTAC 59.434 47.826 0.00 0.00 0.00 3.18
3406 3567 3.435026 GGCAAATAGACAAGCCCATCCTA 60.435 47.826 0.00 0.00 41.25 2.94
3407 3568 2.659428 GCAAATAGACAAGCCCATCCT 58.341 47.619 0.00 0.00 0.00 3.24
3408 3569 1.683385 GGCAAATAGACAAGCCCATCC 59.317 52.381 0.00 0.00 41.25 3.51
3413 3574 9.062132 CTCATAACTGAGGCAAATAGACAAGCC 62.062 44.444 0.00 0.00 44.40 4.35
3414 3575 5.586243 TCATAACTGAGGCAAATAGACAAGC 59.414 40.000 0.00 0.00 0.00 4.01
3415 3576 7.244166 CTCATAACTGAGGCAAATAGACAAG 57.756 40.000 0.00 0.00 44.40 3.16
3429 3590 4.836175 TCCCTACACACAACTCATAACTGA 59.164 41.667 0.00 0.00 0.00 3.41
3430 3591 5.147330 TCCCTACACACAACTCATAACTG 57.853 43.478 0.00 0.00 0.00 3.16
3431 3592 5.071250 TGTTCCCTACACACAACTCATAACT 59.929 40.000 0.00 0.00 0.00 2.24
3432 3593 5.302360 TGTTCCCTACACACAACTCATAAC 58.698 41.667 0.00 0.00 0.00 1.89
3433 3594 5.554437 TGTTCCCTACACACAACTCATAA 57.446 39.130 0.00 0.00 0.00 1.90
3434 3595 5.755409 ATGTTCCCTACACACAACTCATA 57.245 39.130 0.00 0.00 40.19 2.15
3435 3596 4.640771 ATGTTCCCTACACACAACTCAT 57.359 40.909 0.00 0.00 40.19 2.90
3436 3597 5.554437 TTATGTTCCCTACACACAACTCA 57.446 39.130 0.00 0.00 40.19 3.41
3437 3598 6.485648 AGTTTTATGTTCCCTACACACAACTC 59.514 38.462 0.00 0.00 40.19 3.01
3438 3599 6.362248 AGTTTTATGTTCCCTACACACAACT 58.638 36.000 0.00 0.00 40.19 3.16
3439 3600 6.628919 AGTTTTATGTTCCCTACACACAAC 57.371 37.500 0.00 0.00 40.19 3.32
3440 3601 6.711645 GGTAGTTTTATGTTCCCTACACACAA 59.288 38.462 0.00 0.00 40.19 3.33
3441 3602 6.232692 GGTAGTTTTATGTTCCCTACACACA 58.767 40.000 0.00 0.00 40.19 3.72
3442 3603 5.349543 CGGTAGTTTTATGTTCCCTACACAC 59.650 44.000 0.00 0.00 40.19 3.82
3443 3604 5.011943 ACGGTAGTTTTATGTTCCCTACACA 59.988 40.000 0.00 0.00 40.19 3.72
3444 3605 5.482006 ACGGTAGTTTTATGTTCCCTACAC 58.518 41.667 0.00 0.00 40.19 2.90
3445 3606 5.743636 ACGGTAGTTTTATGTTCCCTACA 57.256 39.130 0.00 0.00 41.97 2.74
3446 3607 6.127338 ACCTACGGTAGTTTTATGTTCCCTAC 60.127 42.308 13.76 0.00 32.11 3.18
3447 3608 5.957774 ACCTACGGTAGTTTTATGTTCCCTA 59.042 40.000 13.76 0.00 32.11 3.53
3448 3609 4.779489 ACCTACGGTAGTTTTATGTTCCCT 59.221 41.667 13.76 0.00 32.11 4.20
3449 3610 4.872124 CACCTACGGTAGTTTTATGTTCCC 59.128 45.833 13.76 0.00 32.11 3.97
3450 3611 5.578336 GTCACCTACGGTAGTTTTATGTTCC 59.422 44.000 13.76 0.00 32.11 3.62
3451 3612 6.393171 AGTCACCTACGGTAGTTTTATGTTC 58.607 40.000 13.76 0.94 32.11 3.18
3452 3613 6.350629 AGTCACCTACGGTAGTTTTATGTT 57.649 37.500 13.76 0.00 32.11 2.71
3453 3614 5.990120 AGTCACCTACGGTAGTTTTATGT 57.010 39.130 13.76 1.11 32.11 2.29
3454 3615 7.066766 ACTCTAGTCACCTACGGTAGTTTTATG 59.933 40.741 13.76 4.81 32.11 1.90
3455 3616 7.115414 ACTCTAGTCACCTACGGTAGTTTTAT 58.885 38.462 13.76 0.56 32.11 1.40
3456 3617 6.476378 ACTCTAGTCACCTACGGTAGTTTTA 58.524 40.000 13.76 0.00 32.11 1.52
3457 3618 5.320277 ACTCTAGTCACCTACGGTAGTTTT 58.680 41.667 13.76 0.00 32.11 2.43
3458 3619 4.916183 ACTCTAGTCACCTACGGTAGTTT 58.084 43.478 13.76 0.00 32.11 2.66
3459 3620 4.566426 ACTCTAGTCACCTACGGTAGTT 57.434 45.455 13.76 0.00 32.11 2.24
3460 3621 4.566426 AACTCTAGTCACCTACGGTAGT 57.434 45.455 13.76 0.12 32.11 2.73
3461 3622 5.184711 AGAAACTCTAGTCACCTACGGTAG 58.815 45.833 8.22 8.22 32.11 3.18
3462 3623 5.171339 AGAAACTCTAGTCACCTACGGTA 57.829 43.478 0.00 0.00 32.11 4.02
3463 3624 4.031636 AGAAACTCTAGTCACCTACGGT 57.968 45.455 0.00 0.00 35.62 4.83
3464 3625 5.647225 AGTAAGAAACTCTAGTCACCTACGG 59.353 44.000 0.00 0.00 30.33 4.02
3465 3626 6.740411 AGTAAGAAACTCTAGTCACCTACG 57.260 41.667 0.00 0.00 30.33 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.