Multiple sequence alignment - TraesCS2A01G047900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G047900 chr2A 100.000 1317 0 0 1 1317 18583592 18584908 0.000000e+00 2433.0
1 TraesCS2A01G047900 chr2A 100.000 722 0 0 1519 2240 18585110 18585831 0.000000e+00 1334.0
2 TraesCS2A01G047900 chr2A 93.703 397 21 2 919 1315 18634282 18634674 1.920000e-165 592.0
3 TraesCS2A01G047900 chr2A 89.497 457 37 7 1782 2236 18634957 18635404 3.230000e-158 568.0
4 TraesCS2A01G047900 chr2A 93.966 116 6 1 1533 1648 18634727 18634841 8.220000e-40 174.0
5 TraesCS2A01G047900 chr2A 81.967 183 32 1 219 400 18662263 18662445 1.070000e-33 154.0
6 TraesCS2A01G047900 chr2A 100.000 34 0 0 811 844 18584355 18584388 1.860000e-06 63.9
7 TraesCS2A01G047900 chr2A 100.000 34 0 0 764 797 18584402 18584435 1.860000e-06 63.9
8 TraesCS2A01G047900 chr2D 87.326 718 78 10 86 797 17309827 17310537 0.000000e+00 809.0
9 TraesCS2A01G047900 chr2D 93.849 504 27 2 812 1315 17310505 17311004 0.000000e+00 756.0
10 TraesCS2A01G047900 chr2D 84.349 722 78 19 81 797 17164936 17165627 0.000000e+00 675.0
11 TraesCS2A01G047900 chr2D 91.647 431 34 2 1782 2212 17311286 17311714 1.480000e-166 595.0
12 TraesCS2A01G047900 chr2D 89.912 456 42 4 1782 2236 17168224 17168676 3.210000e-163 584.0
13 TraesCS2A01G047900 chr2D 91.722 302 22 1 812 1113 17165595 17165893 1.240000e-112 416.0
14 TraesCS2A01G047900 chr2D 94.828 116 5 1 1533 1648 17311057 17311171 1.770000e-41 180.0
15 TraesCS2A01G047900 chr2D 94.545 110 4 2 1167 1276 17165886 17165993 3.830000e-38 169.0
16 TraesCS2A01G047900 chr2D 92.683 41 3 0 2146 2186 17168559 17168599 2.400000e-05 60.2
17 TraesCS2A01G047900 chr2D 90.244 41 4 0 2146 2186 17311620 17311660 1.000000e-03 54.7
18 TraesCS2A01G047900 chr2B 94.872 507 23 3 811 1317 29044434 29044937 0.000000e+00 789.0
19 TraesCS2A01G047900 chr2B 89.117 634 62 6 167 797 28906525 28907154 0.000000e+00 782.0
20 TraesCS2A01G047900 chr2B 94.303 509 26 3 1732 2240 29045296 29045801 0.000000e+00 776.0
21 TraesCS2A01G047900 chr2B 84.873 747 103 10 55 797 29994313 29993573 0.000000e+00 745.0
22 TraesCS2A01G047900 chr2B 83.995 781 101 16 34 797 29043694 29044467 0.000000e+00 728.0
23 TraesCS2A01G047900 chr2B 92.172 511 33 4 811 1315 29993606 29993097 0.000000e+00 715.0
24 TraesCS2A01G047900 chr2B 91.865 504 30 3 812 1315 28907122 28907614 0.000000e+00 693.0
25 TraesCS2A01G047900 chr2B 89.693 456 42 5 1782 2236 28907898 28908349 5.360000e-161 577.0
26 TraesCS2A01G047900 chr2B 87.204 422 43 7 1732 2152 29992858 29992447 9.370000e-129 470.0
27 TraesCS2A01G047900 chr2B 92.500 200 11 3 1533 1730 29045069 29045266 1.310000e-72 283.0
28 TraesCS2A01G047900 chr2B 93.966 116 6 1 1533 1648 29993043 29992929 8.220000e-40 174.0
29 TraesCS2A01G047900 chr2B 91.525 118 7 2 1533 1648 28907667 28907783 2.300000e-35 159.0
30 TraesCS2A01G047900 chr2B 87.500 96 7 4 2146 2240 29992482 29992391 3.040000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G047900 chr2A 18583592 18585831 2239 False 973.700000 2433 100.000000 1 2240 4 chr2A.!!$F2 2239
1 TraesCS2A01G047900 chr2A 18634282 18635404 1122 False 444.666667 592 92.388667 919 2236 3 chr2A.!!$F3 1317
2 TraesCS2A01G047900 chr2D 17309827 17311714 1887 False 478.940000 809 91.578800 86 2212 5 chr2D.!!$F2 2126
3 TraesCS2A01G047900 chr2D 17164936 17168676 3740 False 380.840000 675 90.642200 81 2236 5 chr2D.!!$F1 2155
4 TraesCS2A01G047900 chr2B 29043694 29045801 2107 False 644.000000 789 91.417500 34 2240 4 chr2B.!!$F2 2206
5 TraesCS2A01G047900 chr2B 28906525 28908349 1824 False 552.750000 782 90.550000 167 2236 4 chr2B.!!$F1 2069
6 TraesCS2A01G047900 chr2B 29992391 29994313 1922 True 442.000000 745 89.143000 55 2240 5 chr2B.!!$R1 2185

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 292 1.745087 GGACATGCACCAACGATTCAT 59.255 47.619 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 3973 0.109039 GACAACAGGCGAGACTCTCC 60.109 60.0 3.06 3.06 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 8.840833 ATAGTTTTTCAAAATAACGGGCAATT 57.159 26.923 0.00 0.00 0.00 2.32
62 64 7.184800 AGTTTTTCAAAATAACGGGCAATTC 57.815 32.000 0.00 0.00 0.00 2.17
68 70 5.923684 TCAAAATAACGGGCAATTCTTTGAC 59.076 36.000 0.00 0.00 40.42 3.18
76 78 4.990426 CGGGCAATTCTTTGACTTTTCAAT 59.010 37.500 0.00 0.00 41.50 2.57
77 79 6.155827 CGGGCAATTCTTTGACTTTTCAATA 58.844 36.000 0.00 0.00 41.50 1.90
78 80 6.644592 CGGGCAATTCTTTGACTTTTCAATAA 59.355 34.615 0.00 0.00 41.50 1.40
161 164 6.726258 AAATTTCCATCCTTTTGAATTCGC 57.274 33.333 0.04 0.00 0.00 4.70
162 165 4.862902 TTTCCATCCTTTTGAATTCGCA 57.137 36.364 0.04 0.00 0.00 5.10
163 166 3.848272 TCCATCCTTTTGAATTCGCAC 57.152 42.857 0.04 0.00 0.00 5.34
223 228 9.649024 CCACAAACATTGTTTTTATTTTAGCAG 57.351 29.630 12.02 0.05 43.23 4.24
233 238 7.041030 TGTTTTTATTTTAGCAGGTGTCGATCA 60.041 33.333 0.00 0.00 0.00 2.92
234 239 7.441890 TTTTATTTTAGCAGGTGTCGATCAA 57.558 32.000 0.00 0.00 0.00 2.57
236 241 2.380084 TTAGCAGGTGTCGATCAACC 57.620 50.000 6.76 6.76 33.55 3.77
267 272 3.274586 CGATCACCATGGCGGCAG 61.275 66.667 19.29 7.31 39.03 4.85
287 292 1.745087 GGACATGCACCAACGATTCAT 59.255 47.619 0.00 0.00 0.00 2.57
294 300 2.869801 GCACCAACGATTCATAATCCGA 59.130 45.455 0.00 0.00 34.35 4.55
297 303 4.209288 CACCAACGATTCATAATCCGAGTC 59.791 45.833 0.00 0.00 34.35 3.36
304 310 6.662234 ACGATTCATAATCCGAGTCCCTAATA 59.338 38.462 0.00 0.00 34.35 0.98
347 353 7.942894 GGCCAGGAGGTATATTTTGTACTAAAT 59.057 37.037 17.35 17.35 37.19 1.40
401 407 3.452627 AGGCTAGACCAGGTTATCACAAG 59.547 47.826 0.00 0.00 43.14 3.16
501 508 2.780010 ACTTATTACCTGCCATGCTCCT 59.220 45.455 0.00 0.00 0.00 3.69
560 570 9.624373 ATGTCATACTGAAAGATAGCTGAAAAT 57.376 29.630 0.00 0.00 37.43 1.82
596 606 4.230745 TGGCCTTCTCCACTAAATTACC 57.769 45.455 3.32 0.00 0.00 2.85
683 693 6.147000 CCACAATACTAAAATGTTTTGCACCC 59.853 38.462 1.16 0.00 34.02 4.61
734 744 2.524306 CTTACCCCACCAGAAATTGCA 58.476 47.619 0.00 0.00 0.00 4.08
742 752 3.763360 CCACCAGAAATTGCATCACCTAA 59.237 43.478 0.00 0.00 0.00 2.69
790 812 3.155093 GGCACTGCCTATTGTCAATTG 57.845 47.619 13.28 0.00 46.69 2.32
791 813 2.159198 GGCACTGCCTATTGTCAATTGG 60.159 50.000 18.50 18.50 46.69 3.16
792 814 2.754552 GCACTGCCTATTGTCAATTGGA 59.245 45.455 24.78 11.97 36.08 3.53
793 815 3.193267 GCACTGCCTATTGTCAATTGGAA 59.807 43.478 24.78 16.22 36.08 3.53
794 816 4.321899 GCACTGCCTATTGTCAATTGGAAA 60.322 41.667 24.78 13.42 36.08 3.13
795 817 5.625197 GCACTGCCTATTGTCAATTGGAAAT 60.625 40.000 24.78 6.23 36.08 2.17
796 818 6.038356 CACTGCCTATTGTCAATTGGAAATC 58.962 40.000 24.78 10.92 36.08 2.17
797 819 5.954150 ACTGCCTATTGTCAATTGGAAATCT 59.046 36.000 24.78 2.49 36.08 2.40
798 820 7.067372 CACTGCCTATTGTCAATTGGAAATCTA 59.933 37.037 24.78 6.74 36.08 1.98
799 821 7.781693 ACTGCCTATTGTCAATTGGAAATCTAT 59.218 33.333 24.78 4.58 36.08 1.98
800 822 8.537728 TGCCTATTGTCAATTGGAAATCTATT 57.462 30.769 24.78 0.00 36.08 1.73
801 823 8.415553 TGCCTATTGTCAATTGGAAATCTATTG 58.584 33.333 24.78 0.00 39.05 1.90
802 824 8.416329 GCCTATTGTCAATTGGAAATCTATTGT 58.584 33.333 24.78 0.00 38.87 2.71
808 830 9.642327 TGTCAATTGGAAATCTATTGTTCATTG 57.358 29.630 5.42 0.00 38.87 2.82
809 831 9.643693 GTCAATTGGAAATCTATTGTTCATTGT 57.356 29.630 5.42 0.00 38.87 2.71
819 841 9.860898 AATCTATTGTTCATTGTTTAAAGAGGC 57.139 29.630 0.00 0.00 0.00 4.70
820 842 8.402798 TCTATTGTTCATTGTTTAAAGAGGCA 57.597 30.769 0.00 0.00 0.00 4.75
821 843 8.296713 TCTATTGTTCATTGTTTAAAGAGGCAC 58.703 33.333 0.00 0.00 0.00 5.01
823 845 5.830912 TGTTCATTGTTTAAAGAGGCACTG 58.169 37.500 0.00 0.00 41.55 3.66
824 846 4.503741 TCATTGTTTAAAGAGGCACTGC 57.496 40.909 0.00 0.00 41.55 4.40
883 905 6.769822 CCATGTGGTTCAGAAAGCTCTATTAT 59.230 38.462 0.00 0.00 33.95 1.28
963 993 6.053005 TCATTATAGGAAAACCAGTAAGCCG 58.947 40.000 0.00 0.00 0.00 5.52
1073 1103 4.070552 GTCTTCTCGCACGGGGCT 62.071 66.667 0.00 0.00 41.67 5.19
1250 1281 3.510846 GCCATGAGCAAGCCTGAG 58.489 61.111 0.00 0.00 42.97 3.35
1275 3215 1.202031 GCATGCCTTTGTACGTAGCAC 60.202 52.381 6.36 0.00 36.06 4.40
1891 3880 6.048509 ACCAGAAAACCATGAAACAATCAAC 58.951 36.000 0.00 0.00 42.54 3.18
1898 3887 5.591099 ACCATGAAACAATCAACTGTTGAC 58.409 37.500 24.17 11.68 43.48 3.18
2020 4009 2.358957 TGTCTGCTGGCATGATACAAC 58.641 47.619 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.769093 CCGTTATTTTGAAAAACTATTCGAGAT 57.231 29.630 0.00 0.00 31.80 2.75
30 31 8.231837 CCCGTTATTTTGAAAAACTATTCGAGA 58.768 33.333 0.00 0.00 31.80 4.04
31 32 7.007995 GCCCGTTATTTTGAAAAACTATTCGAG 59.992 37.037 0.00 0.00 31.80 4.04
32 33 6.802834 GCCCGTTATTTTGAAAAACTATTCGA 59.197 34.615 0.00 0.00 31.80 3.71
39 40 7.184800 AGAATTGCCCGTTATTTTGAAAAAC 57.815 32.000 0.00 0.00 0.00 2.43
46 47 6.096673 AGTCAAAGAATTGCCCGTTATTTT 57.903 33.333 0.00 0.00 36.45 1.82
47 48 5.722021 AGTCAAAGAATTGCCCGTTATTT 57.278 34.783 0.00 0.00 36.45 1.40
50 51 5.067936 TGAAAAGTCAAAGAATTGCCCGTTA 59.932 36.000 0.00 0.00 36.45 3.18
51 52 4.142049 TGAAAAGTCAAAGAATTGCCCGTT 60.142 37.500 0.00 0.00 36.45 4.44
52 53 3.383185 TGAAAAGTCAAAGAATTGCCCGT 59.617 39.130 0.00 0.00 36.45 5.28
53 54 3.976169 TGAAAAGTCAAAGAATTGCCCG 58.024 40.909 0.00 0.00 36.45 6.13
143 145 3.057596 GTGTGCGAATTCAAAAGGATGGA 60.058 43.478 6.22 0.00 0.00 3.41
145 148 4.164822 AGTGTGCGAATTCAAAAGGATG 57.835 40.909 6.22 0.00 0.00 3.51
206 211 7.028926 TCGACACCTGCTAAAATAAAAACAA 57.971 32.000 0.00 0.00 0.00 2.83
208 213 7.302524 TGATCGACACCTGCTAAAATAAAAAC 58.697 34.615 0.00 0.00 0.00 2.43
213 218 4.873827 GGTTGATCGACACCTGCTAAAATA 59.126 41.667 15.11 0.00 0.00 1.40
223 228 1.659098 GATGAACGGTTGATCGACACC 59.341 52.381 15.11 6.92 0.00 4.16
233 238 1.373748 CGACCACGGATGAACGGTT 60.374 57.895 0.00 0.00 38.39 4.44
234 239 1.601419 ATCGACCACGGATGAACGGT 61.601 55.000 0.00 0.00 40.21 4.83
236 241 0.179148 TGATCGACCACGGATGAACG 60.179 55.000 0.00 0.00 40.21 3.95
267 272 1.164411 TGAATCGTTGGTGCATGTCC 58.836 50.000 0.00 0.00 0.00 4.02
272 277 2.611751 CGGATTATGAATCGTTGGTGCA 59.388 45.455 0.00 0.00 38.82 4.57
278 283 3.641906 AGGGACTCGGATTATGAATCGTT 59.358 43.478 0.00 0.00 38.82 3.85
280 285 3.944055 AGGGACTCGGATTATGAATCG 57.056 47.619 0.00 0.00 38.82 3.34
287 292 7.696981 ACTGTAGATATTAGGGACTCGGATTA 58.303 38.462 0.00 0.00 41.75 1.75
297 303 9.127277 GCCTAGATCTAACTGTAGATATTAGGG 57.873 40.741 21.29 12.86 45.40 3.53
370 376 2.573915 CCTGGTCTAGCCTCCTTTTCTT 59.426 50.000 5.06 0.00 38.35 2.52
401 407 6.599638 AGGTGGTAAGATCTTTAAAGCATGAC 59.400 38.462 14.36 1.95 0.00 3.06
560 570 8.668653 TGGAGAAGGCCATTATTATATCTCAAA 58.331 33.333 5.01 0.00 35.04 2.69
577 587 2.612672 GCGGTAATTTAGTGGAGAAGGC 59.387 50.000 0.00 0.00 0.00 4.35
596 606 1.032794 TGCCTCACTACTGGATAGCG 58.967 55.000 0.00 0.00 33.73 4.26
683 693 5.601662 TCTGTCCAACTCAGTAACTTTCTG 58.398 41.667 0.00 0.00 34.86 3.02
712 722 2.524306 CAATTTCTGGTGGGGTAAGCA 58.476 47.619 0.00 0.00 0.00 3.91
734 744 1.273838 TGGGCTCTCCACTTAGGTGAT 60.274 52.381 6.55 0.00 45.61 3.06
782 804 9.642327 CAATGAACAATAGATTTCCAATTGACA 57.358 29.630 7.12 0.00 35.18 3.58
783 805 9.643693 ACAATGAACAATAGATTTCCAATTGAC 57.356 29.630 7.12 0.00 35.18 3.18
793 815 9.860898 GCCTCTTTAAACAATGAACAATAGATT 57.139 29.630 0.00 0.00 0.00 2.40
794 816 9.023962 TGCCTCTTTAAACAATGAACAATAGAT 57.976 29.630 0.00 0.00 0.00 1.98
795 817 8.296713 GTGCCTCTTTAAACAATGAACAATAGA 58.703 33.333 0.00 0.00 0.00 1.98
796 818 8.299570 AGTGCCTCTTTAAACAATGAACAATAG 58.700 33.333 0.00 0.00 0.00 1.73
797 819 8.081633 CAGTGCCTCTTTAAACAATGAACAATA 58.918 33.333 0.00 0.00 30.09 1.90
798 820 6.925165 CAGTGCCTCTTTAAACAATGAACAAT 59.075 34.615 0.00 0.00 30.09 2.71
799 821 6.272318 CAGTGCCTCTTTAAACAATGAACAA 58.728 36.000 0.00 0.00 30.09 2.83
800 822 5.735922 GCAGTGCCTCTTTAAACAATGAACA 60.736 40.000 2.85 0.00 30.09 3.18
801 823 4.681483 GCAGTGCCTCTTTAAACAATGAAC 59.319 41.667 2.85 0.00 30.09 3.18
802 824 4.261994 GGCAGTGCCTCTTTAAACAATGAA 60.262 41.667 27.48 0.00 46.69 2.57
803 825 3.255642 GGCAGTGCCTCTTTAAACAATGA 59.744 43.478 27.48 0.00 46.69 2.57
804 826 3.578688 GGCAGTGCCTCTTTAAACAATG 58.421 45.455 27.48 1.02 46.69 2.82
805 827 3.942130 GGCAGTGCCTCTTTAAACAAT 57.058 42.857 27.48 0.00 46.69 2.71
818 840 2.754552 TCCAATTGACAATAGGCAGTGC 59.245 45.455 6.55 6.55 0.00 4.40
819 841 5.389859 TTTCCAATTGACAATAGGCAGTG 57.610 39.130 7.12 0.00 0.00 3.66
820 842 5.716228 TGATTTCCAATTGACAATAGGCAGT 59.284 36.000 7.12 0.00 0.00 4.40
821 843 6.211587 TGATTTCCAATTGACAATAGGCAG 57.788 37.500 7.12 0.00 0.00 4.85
822 844 6.014755 TGTTGATTTCCAATTGACAATAGGCA 60.015 34.615 7.12 2.26 37.08 4.75
823 845 6.397272 TGTTGATTTCCAATTGACAATAGGC 58.603 36.000 7.12 0.00 37.08 3.93
824 846 9.740239 CTATGTTGATTTCCAATTGACAATAGG 57.260 33.333 7.12 0.00 37.08 2.57
835 857 7.230747 TGGAGTTTCTCTATGTTGATTTCCAA 58.769 34.615 0.00 0.00 0.00 3.53
883 905 8.244802 GCGTTATTTATAGGCAGAGAGATAGAA 58.755 37.037 0.00 0.00 0.00 2.10
1070 1100 3.556999 TCTAGTACATGGTCTCTCAGCC 58.443 50.000 0.00 0.00 0.00 4.85
1073 1103 5.103898 ACTCCATCTAGTACATGGTCTCTCA 60.104 44.000 9.79 0.00 41.59 3.27
1250 1281 4.377431 GCTACGTACAAAGGCATGCATATC 60.377 45.833 21.36 1.15 0.00 1.63
1275 3215 1.665679 CGTACCCTAGCATGCAAAGTG 59.334 52.381 21.98 10.57 0.00 3.16
1518 3458 6.403746 CCTTAATTTACACACACACACACACA 60.404 38.462 0.00 0.00 0.00 3.72
1519 3459 5.968848 CCTTAATTTACACACACACACACAC 59.031 40.000 0.00 0.00 0.00 3.82
1520 3460 5.066634 CCCTTAATTTACACACACACACACA 59.933 40.000 0.00 0.00 0.00 3.72
1521 3461 5.066764 ACCCTTAATTTACACACACACACAC 59.933 40.000 0.00 0.00 0.00 3.82
1522 3462 5.066634 CACCCTTAATTTACACACACACACA 59.933 40.000 0.00 0.00 0.00 3.72
1523 3463 5.297278 TCACCCTTAATTTACACACACACAC 59.703 40.000 0.00 0.00 0.00 3.82
1524 3464 5.437946 TCACCCTTAATTTACACACACACA 58.562 37.500 0.00 0.00 0.00 3.72
1525 3465 5.562113 GCTCACCCTTAATTTACACACACAC 60.562 44.000 0.00 0.00 0.00 3.82
1526 3466 4.517453 GCTCACCCTTAATTTACACACACA 59.483 41.667 0.00 0.00 0.00 3.72
1527 3467 4.082949 GGCTCACCCTTAATTTACACACAC 60.083 45.833 0.00 0.00 0.00 3.82
1528 3468 4.076394 GGCTCACCCTTAATTTACACACA 58.924 43.478 0.00 0.00 0.00 3.72
1529 3469 3.126343 CGGCTCACCCTTAATTTACACAC 59.874 47.826 0.00 0.00 0.00 3.82
1530 3470 3.340034 CGGCTCACCCTTAATTTACACA 58.660 45.455 0.00 0.00 0.00 3.72
1531 3471 2.681344 CCGGCTCACCCTTAATTTACAC 59.319 50.000 0.00 0.00 0.00 2.90
1597 3539 7.969536 ATCAATGAATATAGAGGAACGTTGG 57.030 36.000 5.00 0.00 0.00 3.77
1631 3573 8.436046 GATGAAATCTACTTCAAGAGCTCATT 57.564 34.615 17.77 4.52 41.17 2.57
1668 3610 8.750298 TCTCCTTGGTAGTACTCAAGATTTAAG 58.250 37.037 20.47 11.82 41.94 1.85
1782 3760 9.890629 GTCCATAGCAATATCACCATCTATTAA 57.109 33.333 0.00 0.00 0.00 1.40
1783 3761 9.271921 AGTCCATAGCAATATCACCATCTATTA 57.728 33.333 0.00 0.00 0.00 0.98
1784 3762 8.155620 AGTCCATAGCAATATCACCATCTATT 57.844 34.615 0.00 0.00 0.00 1.73
1785 3763 7.401204 TGAGTCCATAGCAATATCACCATCTAT 59.599 37.037 0.00 0.00 0.00 1.98
1786 3764 6.725834 TGAGTCCATAGCAATATCACCATCTA 59.274 38.462 0.00 0.00 0.00 1.98
1787 3765 5.545335 TGAGTCCATAGCAATATCACCATCT 59.455 40.000 0.00 0.00 0.00 2.90
1788 3766 5.798132 TGAGTCCATAGCAATATCACCATC 58.202 41.667 0.00 0.00 0.00 3.51
1789 3767 5.830799 TGAGTCCATAGCAATATCACCAT 57.169 39.130 0.00 0.00 0.00 3.55
1790 3768 5.830799 ATGAGTCCATAGCAATATCACCA 57.169 39.130 0.00 0.00 0.00 4.17
1791 3769 7.615403 TCTTATGAGTCCATAGCAATATCACC 58.385 38.462 0.00 0.00 36.68 4.02
1792 3770 9.664332 AATCTTATGAGTCCATAGCAATATCAC 57.336 33.333 0.00 0.00 36.68 3.06
1872 3861 7.064490 GTCAACAGTTGATTGTTTCATGGTTTT 59.936 33.333 19.04 0.00 42.47 2.43
1891 3880 8.835467 TTTCTTTTATTTTCTCACGTCAACAG 57.165 30.769 0.00 0.00 0.00 3.16
1930 3919 7.883391 TGTTTCCCTTCAAGTTTACACATAA 57.117 32.000 0.00 0.00 0.00 1.90
1939 3928 3.642848 ACATGCATGTTTCCCTTCAAGTT 59.357 39.130 26.61 0.00 37.90 2.66
1984 3973 0.109039 GACAACAGGCGAGACTCTCC 60.109 60.000 3.06 3.06 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.