Multiple sequence alignment - TraesCS2A01G045700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G045700 chr2A 100.000 4710 0 0 1 4710 17929056 17933765 0.000000e+00 8698.0
1 TraesCS2A01G045700 chr2A 87.743 514 57 2 1060 1570 17981456 17981966 3.140000e-166 595.0
2 TraesCS2A01G045700 chr2A 81.729 717 106 15 864 1570 18006378 18007079 4.090000e-160 575.0
3 TraesCS2A01G045700 chr2A 83.220 441 73 1 2305 2745 17984443 17984882 2.040000e-108 403.0
4 TraesCS2A01G045700 chr2A 97.059 170 5 0 1713 1882 15754456 15754287 2.140000e-73 287.0
5 TraesCS2A01G045700 chr2A 96.552 174 5 1 1713 1886 199082148 199082320 2.140000e-73 287.0
6 TraesCS2A01G045700 chr2D 88.508 2506 243 18 2244 4710 16016318 16018817 0.000000e+00 2990.0
7 TraesCS2A01G045700 chr2D 95.683 973 36 2 622 1588 16015296 16016268 0.000000e+00 1559.0
8 TraesCS2A01G045700 chr2D 86.933 551 63 2 1015 1562 16232552 16233096 1.120000e-170 610.0
9 TraesCS2A01G045700 chr2D 86.245 538 65 2 1036 1570 16124676 16125207 4.090000e-160 575.0
10 TraesCS2A01G045700 chr2D 83.559 444 72 1 2302 2745 16236982 16237424 9.430000e-112 414.0
11 TraesCS2A01G045700 chr2D 87.222 360 36 8 1881 2238 590806372 590806723 7.340000e-108 401.0
12 TraesCS2A01G045700 chr2D 81.461 356 40 11 212 564 16014953 16015285 7.770000e-68 268.0
13 TraesCS2A01G045700 chr2D 85.484 62 6 3 2940 2998 160678695 160678634 1.420000e-05 62.1
14 TraesCS2A01G045700 chr2B 90.773 1940 152 11 2094 4030 28272785 28274700 0.000000e+00 2566.0
15 TraesCS2A01G045700 chr2B 90.389 1904 142 16 2094 3982 28293007 28294884 0.000000e+00 2464.0
16 TraesCS2A01G045700 chr2B 89.386 1743 84 24 6 1719 28270941 28272611 0.000000e+00 2100.0
17 TraesCS2A01G045700 chr2B 88.623 668 54 13 1060 1719 28292180 28292833 0.000000e+00 793.0
18 TraesCS2A01G045700 chr2B 83.042 743 89 17 838 1578 28254475 28255182 1.430000e-179 640.0
19 TraesCS2A01G045700 chr2B 86.691 541 57 6 1036 1570 28331659 28332190 1.890000e-163 586.0
20 TraesCS2A01G045700 chr2B 82.769 650 106 4 3065 3710 28257226 28257873 4.090000e-160 575.0
21 TraesCS2A01G045700 chr2B 86.304 533 58 6 1036 1562 28349232 28349755 2.460000e-157 566.0
22 TraesCS2A01G045700 chr2B 84.831 534 70 6 4179 4710 28274874 28275398 1.160000e-145 527.0
23 TraesCS2A01G045700 chr2B 85.207 507 64 6 4201 4705 28295535 28296032 1.170000e-140 510.0
24 TraesCS2A01G045700 chr2B 83.784 444 71 1 2302 2745 28357695 28358137 2.030000e-113 420.0
25 TraesCS2A01G045700 chr2B 97.110 173 4 1 1712 1884 232243552 232243381 1.660000e-74 291.0
26 TraesCS2A01G045700 chr2B 97.619 168 4 0 1718 1885 23589093 23589260 5.960000e-74 289.0
27 TraesCS2A01G045700 chr2B 91.667 72 1 2 622 689 28271493 28271563 1.400000e-15 95.3
28 TraesCS2A01G045700 chr2B 85.484 62 5 3 2940 2998 840886 840826 1.420000e-05 62.1
29 TraesCS2A01G045700 chr6B 87.143 350 41 3 1884 2232 64169207 64169553 1.230000e-105 394.0
30 TraesCS2A01G045700 chr4D 85.794 359 49 2 1881 2238 447286092 447285735 3.440000e-101 379.0
31 TraesCS2A01G045700 chr5D 85.754 358 49 2 1882 2238 412268086 412267730 1.240000e-100 377.0
32 TraesCS2A01G045700 chr5D 94.972 179 7 1 1709 1885 5556838 5556660 3.590000e-71 279.0
33 TraesCS2A01G045700 chr1B 85.635 362 45 6 1881 2238 684914682 684914324 1.600000e-99 374.0
34 TraesCS2A01G045700 chr7D 85.552 353 49 2 1881 2232 13684983 13685334 7.450000e-98 368.0
35 TraesCS2A01G045700 chr7B 85.434 357 48 4 1881 2235 532292315 532292669 7.450000e-98 368.0
36 TraesCS2A01G045700 chr7B 85.278 360 46 6 1881 2238 610857462 610857108 9.630000e-97 364.0
37 TraesCS2A01G045700 chr7B 96.571 175 4 1 1718 1890 500023182 500023008 5.960000e-74 289.0
38 TraesCS2A01G045700 chr7B 94.972 179 7 2 1704 1882 707826962 707827138 3.590000e-71 279.0
39 TraesCS2A01G045700 chr7B 80.645 186 29 6 146 328 462791223 462791042 2.290000e-28 137.0
40 TraesCS2A01G045700 chr7B 86.916 107 13 1 1613 1719 610857566 610857461 8.280000e-23 119.0
41 TraesCS2A01G045700 chr5B 84.958 359 52 2 1881 2238 711883306 711882949 3.460000e-96 363.0
42 TraesCS2A01G045700 chr3B 97.619 168 4 0 1718 1885 246304014 246303847 5.960000e-74 289.0
43 TraesCS2A01G045700 chr3D 96.532 173 6 0 1714 1886 325403372 325403200 2.140000e-73 287.0
44 TraesCS2A01G045700 chr3D 86.275 102 14 0 1612 1713 562374601 562374702 1.390000e-20 111.0
45 TraesCS2A01G045700 chr5A 88.889 108 12 0 1612 1719 389765285 389765392 2.960000e-27 134.0
46 TraesCS2A01G045700 chr5A 84.483 58 8 1 2942 2998 411445646 411445703 6.580000e-04 56.5
47 TraesCS2A01G045700 chr1D 87.387 111 13 1 1603 1713 2688021 2688130 4.950000e-25 126.0
48 TraesCS2A01G045700 chr7A 86.667 105 14 0 1607 1711 639293731 639293627 2.980000e-22 117.0
49 TraesCS2A01G045700 chr4A 86.111 108 15 0 1612 1719 730115095 730114988 2.980000e-22 117.0
50 TraesCS2A01G045700 chr3A 86.667 105 14 0 1607 1711 673896705 673896601 2.980000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G045700 chr2A 17929056 17933765 4709 False 8698.000000 8698 100.000000 1 4710 1 chr2A.!!$F1 4709
1 TraesCS2A01G045700 chr2A 18006378 18007079 701 False 575.000000 575 81.729000 864 1570 1 chr2A.!!$F2 706
2 TraesCS2A01G045700 chr2A 17981456 17984882 3426 False 499.000000 595 85.481500 1060 2745 2 chr2A.!!$F4 1685
3 TraesCS2A01G045700 chr2D 16014953 16018817 3864 False 1605.666667 2990 88.550667 212 4710 3 chr2D.!!$F3 4498
4 TraesCS2A01G045700 chr2D 16124676 16125207 531 False 575.000000 575 86.245000 1036 1570 1 chr2D.!!$F1 534
5 TraesCS2A01G045700 chr2D 16232552 16237424 4872 False 512.000000 610 85.246000 1015 2745 2 chr2D.!!$F4 1730
6 TraesCS2A01G045700 chr2B 28270941 28275398 4457 False 1322.075000 2566 89.164250 6 4710 4 chr2B.!!$F6 4704
7 TraesCS2A01G045700 chr2B 28292180 28296032 3852 False 1255.666667 2464 88.073000 1060 4705 3 chr2B.!!$F7 3645
8 TraesCS2A01G045700 chr2B 28254475 28257873 3398 False 607.500000 640 82.905500 838 3710 2 chr2B.!!$F5 2872
9 TraesCS2A01G045700 chr2B 28331659 28332190 531 False 586.000000 586 86.691000 1036 1570 1 chr2B.!!$F2 534
10 TraesCS2A01G045700 chr2B 28349232 28349755 523 False 566.000000 566 86.304000 1036 1562 1 chr2B.!!$F3 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 728 0.038526 AAGTGCTCACCGACGTAAGG 60.039 55.0 7.89 7.89 46.39 2.69 F
768 794 0.244178 GGTCAGTGAGGACGAAGACC 59.756 60.0 0.00 0.00 44.20 3.85 F
1671 1860 0.035458 CCTAGTCATCCATTCCCCGC 59.965 60.0 0.00 0.00 0.00 6.13 F
1675 1864 0.179020 GTCATCCATTCCCCGCATCA 60.179 55.0 0.00 0.00 0.00 3.07 F
3337 9053 0.179129 CCATGGCCGACTGCAAAATC 60.179 55.0 0.00 0.00 43.89 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1666 1855 0.242825 GCATGAATCATGATGCGGGG 59.757 55.000 25.77 1.86 43.81 5.73 R
2745 8439 0.765510 AGGTGAGGTTTGTGAGGTCC 59.234 55.000 0.00 0.00 0.00 4.46 R
3445 9161 0.464036 CAGCGCTACCACCTTCCATA 59.536 55.000 10.99 0.00 0.00 2.74 R
3496 9212 1.203001 CCAGTCCCAAAGGGCAAGTAA 60.203 52.381 0.00 0.00 43.94 2.24 R
4429 10667 1.076024 ACTTGTGGCAATCCAGGACAT 59.924 47.619 0.00 0.00 44.48 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 5.365021 AGATCTCCCTGATGTTTTGGTAG 57.635 43.478 0.00 0.00 35.14 3.18
74 75 7.448748 ATGTTTTGGTAGACAAACCATACTC 57.551 36.000 1.76 0.00 46.34 2.59
75 76 6.433093 ATGTTTTGGTAGACAAACCATACTCC 59.567 38.462 1.76 0.00 46.34 3.85
76 77 7.910999 ATGTTTTGGTAGACAAACCATACTCCA 60.911 37.037 1.76 0.00 46.34 3.86
78 79 5.772393 TGGTAGACAAACCATACTCCATT 57.228 39.130 0.00 0.00 44.68 3.16
79 80 6.134535 TGGTAGACAAACCATACTCCATTT 57.865 37.500 0.00 0.00 44.68 2.32
80 81 5.943416 TGGTAGACAAACCATACTCCATTTG 59.057 40.000 0.00 0.00 44.68 2.32
81 82 5.357032 GGTAGACAAACCATACTCCATTTGG 59.643 44.000 0.00 0.00 39.50 3.28
82 83 4.998051 AGACAAACCATACTCCATTTGGT 58.002 39.130 0.00 0.00 45.54 3.67
128 129 5.805994 CACTGTACCCTACGAAAAGAATCTC 59.194 44.000 0.00 0.00 0.00 2.75
138 139 4.872691 ACGAAAAGAATCTCGATCTTGCAT 59.127 37.500 0.67 0.00 37.22 3.96
270 271 1.135746 ACTCGGTCGTTTCTCTAAGCG 60.136 52.381 0.00 0.00 40.28 4.68
277 278 1.579808 CGTTTCTCTAAGCGCTCTTCG 59.420 52.381 12.06 3.89 42.12 3.79
280 281 0.733729 TCTCTAAGCGCTCTTCGACC 59.266 55.000 12.06 0.00 41.67 4.79
294 295 2.027625 CGACCTGTTTCCACTCCGC 61.028 63.158 0.00 0.00 0.00 5.54
324 325 5.580691 TGATGTGTCGGTAATGAATCAGAAC 59.419 40.000 0.00 0.00 0.00 3.01
343 344 4.289672 AGAACTCCCATGTATCAAGTGGTT 59.710 41.667 0.00 0.00 0.00 3.67
344 345 3.955471 ACTCCCATGTATCAAGTGGTTG 58.045 45.455 0.00 0.00 34.67 3.77
357 358 1.077357 TGGTTGTGGTGGTGGTGAC 60.077 57.895 0.00 0.00 0.00 3.67
565 590 4.025401 GAGTTGTGTTGCCGCCCG 62.025 66.667 0.00 0.00 0.00 6.13
585 610 2.915659 AAGAGACGGGCGGTGTGA 60.916 61.111 1.11 0.00 0.00 3.58
589 614 3.681835 GACGGGCGGTGTGAGACT 61.682 66.667 1.11 0.00 0.00 3.24
601 626 3.572255 GGTGTGAGACTAGGATGAGGATC 59.428 52.174 0.00 0.00 0.00 3.36
692 718 3.764885 AGTTTGTGTTCAAGTGCTCAC 57.235 42.857 0.00 0.00 34.88 3.51
702 728 0.038526 AAGTGCTCACCGACGTAAGG 60.039 55.000 7.89 7.89 46.39 2.69
733 759 1.525197 GTTGAAGCGTGTCACAATCGA 59.475 47.619 3.42 0.00 0.00 3.59
768 794 0.244178 GGTCAGTGAGGACGAAGACC 59.756 60.000 0.00 0.00 44.20 3.85
882 910 9.768662 AGTTTTCTTCTAAATAAACTACGGACA 57.231 29.630 0.00 0.00 38.62 4.02
980 1009 2.202932 CCAGCGACCAATCCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
1089 1129 1.110442 CAGCCCTAGTGGTCTCTCTG 58.890 60.000 0.00 0.00 36.04 3.35
1117 1157 3.075884 GTCTGTCCACTTCTCGTACTCT 58.924 50.000 0.00 0.00 0.00 3.24
1583 1623 3.747529 GCCAACCATCAACTTGAATTTGG 59.252 43.478 17.51 17.51 37.00 3.28
1590 1630 4.462508 TCAACTTGAATTTGGTTGCACA 57.537 36.364 11.61 0.00 39.79 4.57
1593 1633 5.293814 TCAACTTGAATTTGGTTGCACATTG 59.706 36.000 11.61 0.00 39.79 2.82
1594 1634 4.768583 ACTTGAATTTGGTTGCACATTGT 58.231 34.783 0.00 0.00 0.00 2.71
1638 1678 6.382869 AATATGTTTTAGAGCACCTGCATC 57.617 37.500 0.00 0.00 45.16 3.91
1651 1691 2.353357 CTGCATCCAGGCCATTCTTA 57.647 50.000 5.01 0.00 35.38 2.10
1657 1846 3.130734 TCCAGGCCATTCTTACCTAGT 57.869 47.619 5.01 0.00 30.84 2.57
1666 1855 5.703130 GCCATTCTTACCTAGTCATCCATTC 59.297 44.000 0.00 0.00 0.00 2.67
1668 1857 5.888982 TTCTTACCTAGTCATCCATTCCC 57.111 43.478 0.00 0.00 0.00 3.97
1671 1860 0.035458 CCTAGTCATCCATTCCCCGC 59.965 60.000 0.00 0.00 0.00 6.13
1675 1864 0.179020 GTCATCCATTCCCCGCATCA 60.179 55.000 0.00 0.00 0.00 3.07
1676 1865 0.773014 TCATCCATTCCCCGCATCAT 59.227 50.000 0.00 0.00 0.00 2.45
1677 1866 0.885879 CATCCATTCCCCGCATCATG 59.114 55.000 0.00 0.00 0.00 3.07
1682 1871 2.232399 CATTCCCCGCATCATGATTCA 58.768 47.619 5.16 0.00 0.00 2.57
1691 3418 4.216731 CGCATCATGATTCATGCAAGTAC 58.783 43.478 19.74 6.76 44.88 2.73
1695 3422 6.700081 GCATCATGATTCATGCAAGTACATTT 59.300 34.615 19.74 0.00 44.18 2.32
1696 3423 7.096189 GCATCATGATTCATGCAAGTACATTTC 60.096 37.037 19.74 0.58 44.18 2.17
1729 3457 8.840200 TGTTTCTCTTATATACTCCCTCAGTT 57.160 34.615 0.00 0.00 36.43 3.16
1731 3459 8.361889 GTTTCTCTTATATACTCCCTCAGTTCC 58.638 40.741 0.00 0.00 36.43 3.62
1732 3460 7.409408 TCTCTTATATACTCCCTCAGTTCCT 57.591 40.000 0.00 0.00 36.43 3.36
1733 3461 8.521519 TCTCTTATATACTCCCTCAGTTCCTA 57.478 38.462 0.00 0.00 36.43 2.94
1767 3700 8.594881 TCTTTCTAGAGATTTCAACAAGTGAC 57.405 34.615 0.00 0.00 35.39 3.67
1768 3701 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
1769 3702 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
1770 3703 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
1771 3704 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
1772 3705 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
1774 3707 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
1775 3708 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
1776 3709 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
1777 3710 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
1778 3711 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
1779 3712 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
1780 3713 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
1781 3714 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
1782 3715 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
1783 3716 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
1784 3717 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
1785 3718 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
1786 3719 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
1787 3720 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
1788 3721 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1789 3722 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1790 3723 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1791 3724 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1792 3725 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1793 3726 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1794 3727 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1795 3728 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1796 3729 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1797 3730 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1798 3731 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1811 3744 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
1812 3745 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
1813 3746 9.856488 GTGAATCTACACTCTAAAACATGTCTA 57.144 33.333 0.00 0.00 37.73 2.59
1814 3747 9.856488 TGAATCTACACTCTAAAACATGTCTAC 57.144 33.333 0.00 0.00 0.00 2.59
1815 3748 9.856488 GAATCTACACTCTAAAACATGTCTACA 57.144 33.333 0.00 0.00 0.00 2.74
1821 3754 9.587772 ACACTCTAAAACATGTCTACATACATC 57.412 33.333 0.00 0.00 38.01 3.06
1822 3755 9.035607 CACTCTAAAACATGTCTACATACATCC 57.964 37.037 0.00 0.00 38.01 3.51
1823 3756 7.921214 ACTCTAAAACATGTCTACATACATCCG 59.079 37.037 0.00 0.00 38.01 4.18
1824 3757 7.778083 TCTAAAACATGTCTACATACATCCGT 58.222 34.615 0.00 0.00 38.01 4.69
1825 3758 8.905850 TCTAAAACATGTCTACATACATCCGTA 58.094 33.333 0.00 0.00 38.01 4.02
1826 3759 9.692749 CTAAAACATGTCTACATACATCCGTAT 57.307 33.333 0.00 0.00 38.01 3.06
1837 3770 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
1838 3771 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
1839 3772 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
1840 3773 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
1841 3774 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
1842 3775 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
1843 3776 5.416083 TCCGTATGTTGTAGTCCATTTGAG 58.584 41.667 0.00 0.00 0.00 3.02
1844 3777 5.186215 TCCGTATGTTGTAGTCCATTTGAGA 59.814 40.000 0.00 0.00 0.00 3.27
1845 3778 6.049149 CCGTATGTTGTAGTCCATTTGAGAT 58.951 40.000 0.00 0.00 0.00 2.75
1846 3779 6.018751 CCGTATGTTGTAGTCCATTTGAGATG 60.019 42.308 0.00 0.00 0.00 2.90
1856 3789 5.190528 AGTCCATTTGAGATGGCTAGAAAGA 59.809 40.000 0.00 0.00 39.01 2.52
1857 3790 5.295540 GTCCATTTGAGATGGCTAGAAAGAC 59.704 44.000 0.00 0.00 39.01 3.01
1859 3792 5.649395 CCATTTGAGATGGCTAGAAAGACAA 59.351 40.000 0.00 0.00 46.32 3.18
1863 3796 9.638176 ATTTGAGATGGCTAGAAAGACAATTAT 57.362 29.630 0.00 0.00 46.32 1.28
1866 3799 8.896744 TGAGATGGCTAGAAAGACAATTATTTG 58.103 33.333 0.00 0.00 46.32 2.32
1867 3800 9.113838 GAGATGGCTAGAAAGACAATTATTTGA 57.886 33.333 4.42 0.00 46.32 2.69
1868 3801 9.118300 AGATGGCTAGAAAGACAATTATTTGAG 57.882 33.333 4.42 0.00 46.32 3.02
1870 3803 8.862325 TGGCTAGAAAGACAATTATTTGAGAA 57.138 30.769 4.42 0.00 38.01 2.87
1871 3804 8.730680 TGGCTAGAAAGACAATTATTTGAGAAC 58.269 33.333 4.42 0.00 38.01 3.01
1872 3805 8.730680 GGCTAGAAAGACAATTATTTGAGAACA 58.269 33.333 4.42 0.00 36.64 3.18
1873 3806 9.766277 GCTAGAAAGACAATTATTTGAGAACAG 57.234 33.333 4.42 0.00 36.64 3.16
1876 3809 9.007901 AGAAAGACAATTATTTGAGAACAGAGG 57.992 33.333 4.42 0.00 36.64 3.69
1877 3810 7.693969 AAGACAATTATTTGAGAACAGAGGG 57.306 36.000 4.42 0.00 36.64 4.30
1878 3811 7.020827 AGACAATTATTTGAGAACAGAGGGA 57.979 36.000 4.42 0.00 36.64 4.20
1879 3812 7.108847 AGACAATTATTTGAGAACAGAGGGAG 58.891 38.462 4.42 0.00 36.64 4.30
1881 3814 7.918076 ACAATTATTTGAGAACAGAGGGAGTA 58.082 34.615 4.42 0.00 36.64 2.59
1908 3841 9.612620 GAACATGTCTTGAAGTTTAAACCTATG 57.387 33.333 14.72 9.82 0.00 2.23
1913 3846 9.706691 TGTCTTGAAGTTTAAACCTATGTAGAG 57.293 33.333 14.72 3.47 0.00 2.43
1921 3854 7.447238 AGTTTAAACCTATGTAGAGCAGCAAAA 59.553 33.333 14.72 0.00 0.00 2.44
2046 7275 4.927422 TGTCGGACCAAAAATTCTGAAAC 58.073 39.130 5.55 0.00 0.00 2.78
2054 7283 8.935844 GGACCAAAAATTCTGAAACATTTATCC 58.064 33.333 0.00 4.16 0.00 2.59
2055 7284 9.710900 GACCAAAAATTCTGAAACATTTATCCT 57.289 29.630 0.00 0.00 0.00 3.24
2085 7314 9.515020 TTCTAATTAAAAAGCTTTGACACACTG 57.485 29.630 13.54 0.91 0.00 3.66
2086 7315 6.588348 AATTAAAAAGCTTTGACACACTGC 57.412 33.333 13.54 0.00 0.00 4.40
2087 7316 3.591196 AAAAAGCTTTGACACACTGCA 57.409 38.095 13.54 0.00 0.00 4.41
2088 7317 3.591196 AAAAGCTTTGACACACTGCAA 57.409 38.095 13.54 0.00 0.00 4.08
2089 7318 3.806625 AAAGCTTTGACACACTGCAAT 57.193 38.095 11.80 0.00 0.00 3.56
2090 7319 2.787601 AGCTTTGACACACTGCAATG 57.212 45.000 0.00 0.00 0.00 2.82
2091 7320 1.338973 AGCTTTGACACACTGCAATGG 59.661 47.619 0.00 0.00 0.00 3.16
2092 7321 1.067516 GCTTTGACACACTGCAATGGT 59.932 47.619 0.00 0.00 0.00 3.55
2117 7346 8.462016 GTTTGAACTTCAAGGCATGTTCTATAT 58.538 33.333 4.43 0.00 37.70 0.86
2126 7355 7.712639 TCAAGGCATGTTCTATATGAGAGAAAC 59.287 37.037 0.00 0.00 34.78 2.78
2127 7356 7.129457 AGGCATGTTCTATATGAGAGAAACA 57.871 36.000 0.00 0.00 34.78 2.83
2165 7808 9.772973 AACATATGTAGAAAGTTAGTTGTGTCA 57.227 29.630 9.21 0.00 0.00 3.58
2187 7830 8.194769 TGTCACATAGATCTTAAAGCGACATTA 58.805 33.333 0.00 0.00 0.00 1.90
2191 7834 8.851145 ACATAGATCTTAAAGCGACATTAGAGA 58.149 33.333 0.00 0.00 0.00 3.10
2206 7849 2.380064 AGAGAGTCAGGATAGCAGGG 57.620 55.000 0.00 0.00 0.00 4.45
2215 7858 3.909086 GATAGCAGGGCCGGGATGC 62.909 68.421 2.18 6.59 40.29 3.91
2259 7953 1.888512 GTGCATGTTGTCCACCTCATT 59.111 47.619 0.00 0.00 0.00 2.57
2306 8000 1.733402 CTCTGCTCGCCTCCTCGATT 61.733 60.000 0.00 0.00 37.87 3.34
2381 8075 1.745141 GCCATGGACATGAGTGACCTC 60.745 57.143 18.40 0.00 41.20 3.85
2394 8088 0.389817 TGACCTCCTCAACGCATTCG 60.390 55.000 0.00 0.00 42.43 3.34
2426 8120 2.974692 TTTGCCATGCTGTGTCCGGT 62.975 55.000 0.00 0.00 0.00 5.28
2538 8232 2.348411 CTTCCCAGTGTTGGTGAAGT 57.652 50.000 12.66 0.00 43.40 3.01
2624 8318 4.511617 TCTCAATAGCCTCATCGATGAC 57.488 45.455 23.99 15.22 32.50 3.06
2745 8439 4.762289 ATTAAGGCTCAGTTGGAGGTAG 57.238 45.455 0.00 0.00 44.22 3.18
2794 8488 8.446599 ACATATATTAAGGTTCCGTTCCAAAG 57.553 34.615 0.00 0.00 0.00 2.77
3025 8741 8.512138 ACTTTAAATAATTTGGAACGGAGAGTG 58.488 33.333 0.00 0.00 0.00 3.51
3026 8742 7.989416 TTAAATAATTTGGAACGGAGAGTGT 57.011 32.000 0.00 0.00 0.00 3.55
3045 8761 9.119329 GAGAGTGTAGCTTATATATGTTGTTCG 57.881 37.037 0.00 0.00 0.00 3.95
3103 8819 0.961019 TCATGTTTGAAGCTGGCACC 59.039 50.000 0.00 0.00 0.00 5.01
3187 8903 4.000988 TGAATAAGCTGAAAACCGAGGTC 58.999 43.478 0.00 0.00 0.00 3.85
3337 9053 0.179129 CCATGGCCGACTGCAAAATC 60.179 55.000 0.00 0.00 43.89 2.17
3349 9065 3.056607 ACTGCAAAATCAATGGCTACACC 60.057 43.478 0.00 0.00 39.84 4.16
3406 9122 0.622665 CTCTTGCAAGGGATCCCAGT 59.377 55.000 32.69 17.30 38.92 4.00
3445 9161 0.250901 AGTTCATGCCTGAGCGGTTT 60.251 50.000 0.48 0.00 44.31 3.27
3488 9204 5.556915 CAACTATGGACTACAAGGGAAACA 58.443 41.667 0.00 0.00 0.00 2.83
3547 9263 1.075374 TGCCCAGGTATCAACTTTGCT 59.925 47.619 0.00 0.00 0.00 3.91
3556 9272 5.351465 AGGTATCAACTTTGCTATTGTGACG 59.649 40.000 0.00 0.00 0.00 4.35
3693 9409 1.846712 AAGCTCCTCCTTGTCCCTGC 61.847 60.000 0.00 0.00 0.00 4.85
3699 9415 2.121992 CTCCTTGTCCCTGCAGTGCT 62.122 60.000 17.60 0.00 0.00 4.40
3720 9436 7.669722 AGTGCTGGAAGATTAATAAAAACTGGA 59.330 33.333 0.00 0.00 34.07 3.86
3721 9437 8.303876 GTGCTGGAAGATTAATAAAAACTGGAA 58.696 33.333 0.00 0.00 34.07 3.53
3768 9487 7.538575 AGTCATATGGATTTTCGGACTTTTTG 58.461 34.615 2.13 0.00 30.53 2.44
3788 9507 6.606234 TTTGTTAAGCACGAGTGTATTGAA 57.394 33.333 5.07 0.00 0.00 2.69
3793 9512 8.225107 TGTTAAGCACGAGTGTATTGAATAAAC 58.775 33.333 5.07 0.00 0.00 2.01
3808 9527 7.725818 TTGAATAAACAAAGCATTGCATCAA 57.274 28.000 11.91 3.41 40.34 2.57
3829 9548 9.687210 CATCAAAAATCGATCACCATATTCATT 57.313 29.630 0.00 0.00 0.00 2.57
3863 9582 9.703892 ATTAAGACTAGTACATGAATGCTCATC 57.296 33.333 0.00 0.00 40.49 2.92
3866 9585 6.548993 AGACTAGTACATGAATGCTCATCTGA 59.451 38.462 0.00 0.00 40.49 3.27
3879 9598 8.565896 AATGCTCATCTGAACAGTTTATAACA 57.434 30.769 1.73 0.00 0.00 2.41
3897 9616 8.806177 TTATAACATTATATGTGCGACTCGTT 57.194 30.769 0.00 0.00 44.07 3.85
3907 9626 3.155998 GTGCGACTCGTTGATTGAAATG 58.844 45.455 0.00 0.00 0.00 2.32
3914 9633 6.454318 CGACTCGTTGATTGAAATGTCCTTAG 60.454 42.308 0.00 0.00 0.00 2.18
3928 9647 5.102953 TGTCCTTAGCAGCAATACTCAAT 57.897 39.130 0.00 0.00 0.00 2.57
3953 9672 6.394809 ACTTCCTTGTACAACTTGGTTTTTG 58.605 36.000 3.59 0.00 0.00 2.44
3958 9677 6.532302 CCTTGTACAACTTGGTTTTTGGTAAC 59.468 38.462 3.59 0.00 0.00 2.50
3982 9701 6.841755 ACAGATAGATACCCTTGCTTACTTCT 59.158 38.462 0.00 0.00 0.00 2.85
3983 9702 7.151308 CAGATAGATACCCTTGCTTACTTCTG 58.849 42.308 0.00 0.00 0.00 3.02
3985 9704 2.380084 TACCCTTGCTTACTTCTGCG 57.620 50.000 0.00 0.00 0.00 5.18
3995 9714 2.380084 TACTTCTGCGGGTCACAATC 57.620 50.000 0.00 0.00 0.00 2.67
4013 9732 0.768221 TCAAAGAGCCTCTGGTGGGT 60.768 55.000 0.00 0.00 40.97 4.51
4032 9751 3.582647 GGGTTTCCATTTTCCTTCACCAT 59.417 43.478 0.00 0.00 0.00 3.55
4070 9809 5.282055 TGAGATCATCAAGCGACCTTATT 57.718 39.130 0.00 0.00 34.02 1.40
4071 9810 6.405278 TGAGATCATCAAGCGACCTTATTA 57.595 37.500 0.00 0.00 34.02 0.98
4072 9811 6.816136 TGAGATCATCAAGCGACCTTATTAA 58.184 36.000 0.00 0.00 34.02 1.40
4073 9812 7.445121 TGAGATCATCAAGCGACCTTATTAAT 58.555 34.615 0.00 0.00 34.02 1.40
4078 9817 8.450578 TCATCAAGCGACCTTATTAATGAAAT 57.549 30.769 0.00 0.00 0.00 2.17
4086 9825 7.456253 CGACCTTATTAATGAAATATGCCTCG 58.544 38.462 0.00 0.00 30.11 4.63
4087 9826 7.117812 CGACCTTATTAATGAAATATGCCTCGT 59.882 37.037 0.00 0.00 30.11 4.18
4093 9832 7.566760 TTAATGAAATATGCCTCGTGTCATT 57.433 32.000 0.00 0.00 37.79 2.57
4095 9834 4.512484 TGAAATATGCCTCGTGTCATTGA 58.488 39.130 0.00 0.00 0.00 2.57
4099 9838 0.250252 TGCCTCGTGTCATTGAGCAA 60.250 50.000 0.00 0.00 0.00 3.91
4109 9848 2.030371 TCATTGAGCAACAACCTGCAA 58.970 42.857 0.00 0.00 45.18 4.08
4134 9873 7.306205 CCAATGTTTGGTTTAAAGCATATGG 57.694 36.000 19.95 17.60 45.93 2.74
4143 9882 8.354711 TGGTTTAAAGCATATGGTTGTCAATA 57.645 30.769 20.22 6.43 35.72 1.90
4175 9920 4.734398 GACCACTGTCTCTCATTCTCAT 57.266 45.455 0.00 0.00 38.53 2.90
4189 9996 5.545588 TCATTCTCATAGAGCCACTAATGC 58.454 41.667 0.00 0.00 34.56 3.56
4190 9997 5.070847 TCATTCTCATAGAGCCACTAATGCA 59.929 40.000 0.00 0.00 34.56 3.96
4192 9999 4.953667 TCTCATAGAGCCACTAATGCAAG 58.046 43.478 0.00 0.00 34.56 4.01
4233 10467 8.187913 AGTGCTCTTAGTATGATGTGATATGT 57.812 34.615 0.00 0.00 0.00 2.29
4244 10478 6.293004 TGATGTGATATGTAAGGACACACA 57.707 37.500 0.00 0.00 41.56 3.72
4250 10484 7.280652 TGTGATATGTAAGGACACACATCAATG 59.719 37.037 0.00 0.00 38.76 2.82
4261 10499 2.819608 ACACATCAATGCACACCCTAAC 59.180 45.455 0.00 0.00 0.00 2.34
4271 10509 2.493278 GCACACCCTAACTCATTGCATT 59.507 45.455 0.00 0.00 0.00 3.56
4276 10514 4.400251 CACCCTAACTCATTGCATTGTCAT 59.600 41.667 8.36 0.00 0.00 3.06
4277 10515 4.400251 ACCCTAACTCATTGCATTGTCATG 59.600 41.667 8.36 0.00 0.00 3.07
4340 10578 4.820897 TCCTCACATTGTGTAGTCATGTC 58.179 43.478 16.06 0.00 34.79 3.06
4347 10585 5.049680 ACATTGTGTAGTCATGTCGGAAAAC 60.050 40.000 0.00 0.00 0.00 2.43
4357 10595 1.409790 TGTCGGAAAACGTCTCTTCCA 59.590 47.619 18.71 7.83 41.10 3.53
4380 10618 7.923878 TCCATTTTCTTGGTTTTACTTTGTAGC 59.076 33.333 0.00 0.00 38.01 3.58
4387 10625 7.776500 TCTTGGTTTTACTTTGTAGCTTTACCT 59.224 33.333 0.00 0.00 0.00 3.08
4396 10634 5.818678 TTGTAGCTTTACCTTCTCCAAGA 57.181 39.130 0.00 0.00 0.00 3.02
4400 10638 5.096443 AGCTTTACCTTCTCCAAGATCTG 57.904 43.478 0.00 0.00 0.00 2.90
4402 10640 5.013599 AGCTTTACCTTCTCCAAGATCTGTT 59.986 40.000 0.00 0.00 0.00 3.16
4403 10641 5.707764 GCTTTACCTTCTCCAAGATCTGTTT 59.292 40.000 0.00 0.00 0.00 2.83
4424 10662 9.350357 CTGTTTTATATAGCATGCAATCATTCC 57.650 33.333 21.98 0.99 0.00 3.01
4429 10667 7.770366 ATATAGCATGCAATCATTCCTTTGA 57.230 32.000 21.98 0.00 0.00 2.69
4467 10705 7.415877 GCCACAAGTAAACTCCTTTTTGTCTTA 60.416 37.037 0.00 0.00 0.00 2.10
4470 10708 8.464404 ACAAGTAAACTCCTTTTTGTCTTAACC 58.536 33.333 0.00 0.00 0.00 2.85
4502 10740 5.645497 CCCACTAGATTTATCTATGCCTTGC 59.355 44.000 0.00 0.00 38.60 4.01
4504 10742 6.370994 CCACTAGATTTATCTATGCCTTGCTG 59.629 42.308 0.00 0.00 38.60 4.41
4529 10767 5.104610 AGTCTTGCATGTCTACTTCCATGAT 60.105 40.000 0.00 0.00 40.70 2.45
4566 10804 3.435275 TGGGTTTAGCCACATTTGCATA 58.565 40.909 0.00 0.00 39.65 3.14
4569 10807 4.810491 GGGTTTAGCCACATTTGCATAATG 59.190 41.667 15.58 15.58 39.65 1.90
4579 10817 4.951715 ACATTTGCATAATGAGAAGAGGCA 59.048 37.500 20.96 0.00 0.00 4.75
4586 10824 5.448360 GCATAATGAGAAGAGGCACTGTTTC 60.448 44.000 0.00 0.00 43.97 2.78
4595 10834 3.327757 AGAGGCACTGTTTCTCCATGTTA 59.672 43.478 0.00 0.00 41.55 2.41
4599 10838 7.071196 AGAGGCACTGTTTCTCCATGTTATATA 59.929 37.037 0.00 0.00 41.55 0.86
4630 10869 6.690098 GGATTCTTCATTCAACATGATGTTCG 59.310 38.462 8.03 4.79 38.77 3.95
4647 10886 3.572682 TGTTCGTCACCATCTCTAGTGTT 59.427 43.478 0.00 0.00 35.45 3.32
4669 10908 2.492088 GGCCTACCATTTGAACCTGAAC 59.508 50.000 0.00 0.00 35.26 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.841295 TCGAAAATAATGGCTTACTAGGTAAAT 57.159 29.630 0.00 0.00 0.00 1.40
4 5 9.101655 GTCGAAAATAATGGCTTACTAGGTAAA 57.898 33.333 0.00 0.00 0.00 2.01
27 28 1.889829 GGGAGATCTAGGTCCATGTCG 59.110 57.143 0.00 0.00 34.14 4.35
93 94 6.766944 TCGTAGGGTACAGTGAAAATGAAAAA 59.233 34.615 0.00 0.00 34.17 1.94
108 109 5.240713 TCGAGATTCTTTTCGTAGGGTAC 57.759 43.478 0.00 0.00 37.99 3.34
128 129 6.506147 TCCCAAAATGAATTATGCAAGATCG 58.494 36.000 0.00 0.00 0.00 3.69
138 139 9.282569 CATTTTTCCAACTCCCAAAATGAATTA 57.717 29.630 9.59 0.00 44.24 1.40
196 197 6.777782 AGGAAGACTTGTCTTGATCAATTCT 58.222 36.000 19.18 1.91 36.74 2.40
277 278 0.321653 ATGCGGAGTGGAAACAGGTC 60.322 55.000 0.00 0.00 44.46 3.85
280 281 3.689161 TCATAAATGCGGAGTGGAAACAG 59.311 43.478 0.00 0.00 44.46 3.16
294 295 8.558700 TGATTCATTACCGACACATCATAAATG 58.441 33.333 0.00 0.00 0.00 2.32
324 325 3.691118 CACAACCACTTGATACATGGGAG 59.309 47.826 0.00 0.00 37.86 4.30
343 344 4.555709 GCCGTCACCACCACCACA 62.556 66.667 0.00 0.00 0.00 4.17
344 345 4.555709 TGCCGTCACCACCACCAC 62.556 66.667 0.00 0.00 0.00 4.16
486 487 5.070313 CCAAAACTCCTTGAAATCTCCCAAA 59.930 40.000 0.00 0.00 0.00 3.28
601 626 3.798337 GCATTGAACACAAACTTCACTGG 59.202 43.478 0.00 0.00 31.96 4.00
692 718 2.144482 ACAACAGAACCTTACGTCGG 57.856 50.000 0.00 0.00 0.00 4.79
702 728 3.308866 ACACGCTTCAACTACAACAGAAC 59.691 43.478 0.00 0.00 0.00 3.01
733 759 1.001760 ACCTCACACGATAGCCCCT 59.998 57.895 0.00 0.00 42.67 4.79
768 794 3.129988 ACGTCTTGTAGTTTATCCCTCGG 59.870 47.826 0.00 0.00 0.00 4.63
952 981 0.536460 GGTCGCTGGGTTTCTTTCCA 60.536 55.000 0.00 0.00 0.00 3.53
980 1009 2.215196 TGGCTGTTCAGTTTACGGAAC 58.785 47.619 15.84 15.84 46.43 3.62
1089 1129 1.005630 AAGTGGACAGACGAGCAGC 60.006 57.895 0.00 0.00 0.00 5.25
1117 1157 3.033764 GAAGCGACGTGCCACGAA 61.034 61.111 25.94 0.00 46.05 3.85
1156 1196 2.685017 TCTGGCTCTGGCGGTGAT 60.685 61.111 0.00 0.00 39.81 3.06
1548 1588 0.606604 GGTTGGCTACCTCGTTCTCA 59.393 55.000 11.03 0.00 44.10 3.27
1638 1678 2.771943 TGACTAGGTAAGAATGGCCTGG 59.228 50.000 3.32 0.00 36.99 4.45
1648 1688 3.006967 CGGGGAATGGATGACTAGGTAAG 59.993 52.174 0.00 0.00 0.00 2.34
1651 1691 1.424638 CGGGGAATGGATGACTAGGT 58.575 55.000 0.00 0.00 0.00 3.08
1657 1846 0.773014 ATGATGCGGGGAATGGATGA 59.227 50.000 0.00 0.00 0.00 2.92
1666 1855 0.242825 GCATGAATCATGATGCGGGG 59.757 55.000 25.77 1.86 43.81 5.73
1668 1857 2.034179 ACTTGCATGAATCATGATGCGG 59.966 45.455 25.77 11.69 46.66 5.69
1671 1860 8.135529 AGAAATGTACTTGCATGAATCATGATG 58.864 33.333 25.77 15.80 43.81 3.07
1675 1864 7.876936 AGAGAAATGTACTTGCATGAATCAT 57.123 32.000 6.60 0.00 0.00 2.45
1676 1865 7.692460 AAGAGAAATGTACTTGCATGAATCA 57.308 32.000 6.60 3.11 0.00 2.57
1677 1866 8.976986 AAAAGAGAAATGTACTTGCATGAATC 57.023 30.769 6.60 0.00 0.00 2.52
1705 3433 8.361889 GGAACTGAGGGAGTATATAAGAGAAAC 58.638 40.741 0.00 0.00 33.09 2.78
1743 3676 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
1748 3681 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
1750 3683 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
1751 3684 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
1752 3685 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
1753 3686 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
1754 3687 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
1755 3688 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
1756 3689 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
1757 3690 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
1758 3691 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
1759 3692 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
1760 3693 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
1761 3694 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
1762 3695 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
1763 3696 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
1764 3697 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
1765 3698 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
1766 3699 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
1767 3700 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
1768 3701 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1769 3702 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1770 3703 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1771 3704 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1772 3705 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1773 3706 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1774 3707 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1775 3708 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1776 3709 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1787 3720 8.764524 AGACATGTTTTAGAGTGTAGATTCAC 57.235 34.615 0.00 0.00 38.46 3.18
1788 3721 9.856488 GTAGACATGTTTTAGAGTGTAGATTCA 57.144 33.333 0.00 0.00 0.00 2.57
1789 3722 9.856488 TGTAGACATGTTTTAGAGTGTAGATTC 57.144 33.333 0.00 0.00 0.00 2.52
1795 3728 9.587772 GATGTATGTAGACATGTTTTAGAGTGT 57.412 33.333 0.00 0.00 40.18 3.55
1796 3729 9.035607 GGATGTATGTAGACATGTTTTAGAGTG 57.964 37.037 0.00 0.00 40.18 3.51
1797 3730 7.921214 CGGATGTATGTAGACATGTTTTAGAGT 59.079 37.037 0.00 0.00 40.18 3.24
1798 3731 7.921214 ACGGATGTATGTAGACATGTTTTAGAG 59.079 37.037 0.00 0.00 40.18 2.43
1799 3732 7.778083 ACGGATGTATGTAGACATGTTTTAGA 58.222 34.615 0.00 0.00 40.18 2.10
1800 3733 9.692749 ATACGGATGTATGTAGACATGTTTTAG 57.307 33.333 0.00 0.00 40.18 1.85
1815 3748 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
1816 3749 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
1818 3751 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
1819 3752 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
1820 3753 5.186215 TCTCAAATGGACTACAACATACGGA 59.814 40.000 0.00 0.00 0.00 4.69
1821 3754 5.416083 TCTCAAATGGACTACAACATACGG 58.584 41.667 0.00 0.00 0.00 4.02
1822 3755 6.018751 CCATCTCAAATGGACTACAACATACG 60.019 42.308 0.00 0.00 41.64 3.06
1823 3756 6.238484 GCCATCTCAAATGGACTACAACATAC 60.238 42.308 8.23 0.00 41.64 2.39
1824 3757 5.822519 GCCATCTCAAATGGACTACAACATA 59.177 40.000 8.23 0.00 41.64 2.29
1825 3758 4.641989 GCCATCTCAAATGGACTACAACAT 59.358 41.667 8.23 0.00 41.64 2.71
1826 3759 4.009675 GCCATCTCAAATGGACTACAACA 58.990 43.478 8.23 0.00 41.64 3.33
1827 3760 4.265073 AGCCATCTCAAATGGACTACAAC 58.735 43.478 8.23 0.00 41.64 3.32
1828 3761 4.574674 AGCCATCTCAAATGGACTACAA 57.425 40.909 8.23 0.00 41.64 2.41
1829 3762 4.962362 TCTAGCCATCTCAAATGGACTACA 59.038 41.667 8.23 0.00 41.64 2.74
1830 3763 5.537300 TCTAGCCATCTCAAATGGACTAC 57.463 43.478 8.23 0.00 41.64 2.73
1831 3764 6.384015 TCTTTCTAGCCATCTCAAATGGACTA 59.616 38.462 8.23 7.79 41.64 2.59
1832 3765 5.190528 TCTTTCTAGCCATCTCAAATGGACT 59.809 40.000 8.23 7.12 41.64 3.85
1833 3766 5.295540 GTCTTTCTAGCCATCTCAAATGGAC 59.704 44.000 8.23 0.19 41.64 4.02
1834 3767 5.045651 TGTCTTTCTAGCCATCTCAAATGGA 60.046 40.000 8.23 0.00 41.64 3.41
1835 3768 5.188434 TGTCTTTCTAGCCATCTCAAATGG 58.812 41.667 0.00 0.00 41.99 3.16
1836 3769 6.748333 TTGTCTTTCTAGCCATCTCAAATG 57.252 37.500 0.00 0.00 0.00 2.32
1837 3770 7.951347 AATTGTCTTTCTAGCCATCTCAAAT 57.049 32.000 0.00 0.00 0.00 2.32
1838 3771 9.466497 AATAATTGTCTTTCTAGCCATCTCAAA 57.534 29.630 0.00 0.00 0.00 2.69
1839 3772 9.466497 AAATAATTGTCTTTCTAGCCATCTCAA 57.534 29.630 0.00 0.00 0.00 3.02
1840 3773 8.896744 CAAATAATTGTCTTTCTAGCCATCTCA 58.103 33.333 0.00 0.00 0.00 3.27
1841 3774 9.113838 TCAAATAATTGTCTTTCTAGCCATCTC 57.886 33.333 0.00 0.00 37.79 2.75
1842 3775 9.118300 CTCAAATAATTGTCTTTCTAGCCATCT 57.882 33.333 0.00 0.00 37.79 2.90
1843 3776 9.113838 TCTCAAATAATTGTCTTTCTAGCCATC 57.886 33.333 0.00 0.00 37.79 3.51
1844 3777 9.466497 TTCTCAAATAATTGTCTTTCTAGCCAT 57.534 29.630 0.00 0.00 37.79 4.40
1845 3778 8.730680 GTTCTCAAATAATTGTCTTTCTAGCCA 58.269 33.333 0.00 0.00 37.79 4.75
1846 3779 8.730680 TGTTCTCAAATAATTGTCTTTCTAGCC 58.269 33.333 0.00 0.00 37.79 3.93
1856 3789 6.784031 ACTCCCTCTGTTCTCAAATAATTGT 58.216 36.000 0.00 0.00 37.79 2.71
1857 3790 8.260818 TCTACTCCCTCTGTTCTCAAATAATTG 58.739 37.037 0.00 0.00 37.92 2.32
1858 3791 8.380742 TCTACTCCCTCTGTTCTCAAATAATT 57.619 34.615 0.00 0.00 0.00 1.40
1859 3792 7.979786 TCTACTCCCTCTGTTCTCAAATAAT 57.020 36.000 0.00 0.00 0.00 1.28
1863 3796 4.899457 TGTTCTACTCCCTCTGTTCTCAAA 59.101 41.667 0.00 0.00 0.00 2.69
1866 3799 4.464597 ACATGTTCTACTCCCTCTGTTCTC 59.535 45.833 0.00 0.00 0.00 2.87
1867 3800 4.421131 ACATGTTCTACTCCCTCTGTTCT 58.579 43.478 0.00 0.00 0.00 3.01
1868 3801 4.464597 AGACATGTTCTACTCCCTCTGTTC 59.535 45.833 0.00 0.00 30.17 3.18
1870 3803 4.054359 AGACATGTTCTACTCCCTCTGT 57.946 45.455 0.00 0.00 30.17 3.41
1871 3804 4.464244 TCAAGACATGTTCTACTCCCTCTG 59.536 45.833 0.00 0.00 32.51 3.35
1872 3805 4.678256 TCAAGACATGTTCTACTCCCTCT 58.322 43.478 0.00 0.00 32.51 3.69
1873 3806 5.046950 ACTTCAAGACATGTTCTACTCCCTC 60.047 44.000 0.00 0.00 32.51 4.30
1875 3808 5.153950 ACTTCAAGACATGTTCTACTCCC 57.846 43.478 0.00 0.00 32.51 4.30
1876 3809 8.603242 TTAAACTTCAAGACATGTTCTACTCC 57.397 34.615 0.00 0.00 32.51 3.85
1877 3810 9.865484 GTTTAAACTTCAAGACATGTTCTACTC 57.135 33.333 11.18 0.00 32.51 2.59
1878 3811 8.837389 GGTTTAAACTTCAAGACATGTTCTACT 58.163 33.333 17.50 0.00 32.51 2.57
1879 3812 8.837389 AGGTTTAAACTTCAAGACATGTTCTAC 58.163 33.333 17.50 0.00 32.51 2.59
1881 3814 7.881775 AGGTTTAAACTTCAAGACATGTTCT 57.118 32.000 17.50 0.00 35.32 3.01
1908 3841 6.546972 AGTTAGAAAGTTTTGCTGCTCTAC 57.453 37.500 0.00 0.00 0.00 2.59
1911 3844 6.787085 TCTAGTTAGAAAGTTTTGCTGCTC 57.213 37.500 0.00 0.00 0.00 4.26
1913 3846 7.811653 AGATTCTAGTTAGAAAGTTTTGCTGC 58.188 34.615 5.75 0.00 44.63 5.25
2059 7288 9.515020 CAGTGTGTCAAAGCTTTTTAATTAGAA 57.485 29.630 9.53 0.00 0.00 2.10
2060 7289 7.647715 GCAGTGTGTCAAAGCTTTTTAATTAGA 59.352 33.333 9.53 0.00 0.00 2.10
2061 7290 7.434897 TGCAGTGTGTCAAAGCTTTTTAATTAG 59.565 33.333 9.53 0.00 0.00 1.73
2062 7291 7.261325 TGCAGTGTGTCAAAGCTTTTTAATTA 58.739 30.769 9.53 0.00 0.00 1.40
2063 7292 6.105333 TGCAGTGTGTCAAAGCTTTTTAATT 58.895 32.000 9.53 0.00 0.00 1.40
2064 7293 5.659463 TGCAGTGTGTCAAAGCTTTTTAAT 58.341 33.333 9.53 0.00 0.00 1.40
2065 7294 5.065704 TGCAGTGTGTCAAAGCTTTTTAA 57.934 34.783 9.53 0.00 0.00 1.52
2066 7295 4.710423 TGCAGTGTGTCAAAGCTTTTTA 57.290 36.364 9.53 0.00 0.00 1.52
2067 7296 3.591196 TGCAGTGTGTCAAAGCTTTTT 57.409 38.095 9.53 0.00 0.00 1.94
2068 7297 3.591196 TTGCAGTGTGTCAAAGCTTTT 57.409 38.095 9.53 0.00 0.00 2.27
2069 7298 3.450578 CATTGCAGTGTGTCAAAGCTTT 58.549 40.909 5.69 5.69 0.00 3.51
2070 7299 2.223876 CCATTGCAGTGTGTCAAAGCTT 60.224 45.455 8.53 0.00 0.00 3.74
2071 7300 1.338973 CCATTGCAGTGTGTCAAAGCT 59.661 47.619 8.53 0.00 0.00 3.74
2072 7301 1.067516 ACCATTGCAGTGTGTCAAAGC 59.932 47.619 8.53 0.00 0.00 3.51
2073 7302 3.441496 AACCATTGCAGTGTGTCAAAG 57.559 42.857 8.53 0.00 0.00 2.77
2074 7303 3.194329 TCAAACCATTGCAGTGTGTCAAA 59.806 39.130 8.53 0.00 36.45 2.69
2075 7304 2.757314 TCAAACCATTGCAGTGTGTCAA 59.243 40.909 8.53 0.00 36.45 3.18
2076 7305 2.373224 TCAAACCATTGCAGTGTGTCA 58.627 42.857 8.53 0.00 36.45 3.58
2077 7306 3.115554 GTTCAAACCATTGCAGTGTGTC 58.884 45.455 8.53 0.00 36.45 3.67
2078 7307 2.760092 AGTTCAAACCATTGCAGTGTGT 59.240 40.909 8.53 3.21 36.45 3.72
2079 7308 3.441496 AGTTCAAACCATTGCAGTGTG 57.559 42.857 8.53 0.32 36.45 3.82
2080 7309 3.446873 TGAAGTTCAAACCATTGCAGTGT 59.553 39.130 8.53 0.00 36.45 3.55
2081 7310 4.044336 TGAAGTTCAAACCATTGCAGTG 57.956 40.909 2.20 1.49 36.45 3.66
2082 7311 4.441913 CCTTGAAGTTCAAACCATTGCAGT 60.442 41.667 18.55 0.00 35.73 4.40
2083 7312 4.053295 CCTTGAAGTTCAAACCATTGCAG 58.947 43.478 18.55 4.37 35.73 4.41
2084 7313 3.740764 GCCTTGAAGTTCAAACCATTGCA 60.741 43.478 18.55 0.00 35.73 4.08
2085 7314 2.802247 GCCTTGAAGTTCAAACCATTGC 59.198 45.455 18.55 10.67 35.73 3.56
2086 7315 4.057406 TGCCTTGAAGTTCAAACCATTG 57.943 40.909 18.55 6.54 35.73 2.82
2087 7316 4.101430 ACATGCCTTGAAGTTCAAACCATT 59.899 37.500 18.55 11.14 35.73 3.16
2088 7317 3.642848 ACATGCCTTGAAGTTCAAACCAT 59.357 39.130 18.55 18.29 35.73 3.55
2089 7318 3.030291 ACATGCCTTGAAGTTCAAACCA 58.970 40.909 18.55 17.05 35.73 3.67
2090 7319 3.733443 ACATGCCTTGAAGTTCAAACC 57.267 42.857 18.55 12.55 35.73 3.27
2091 7320 4.936891 AGAACATGCCTTGAAGTTCAAAC 58.063 39.130 18.55 13.90 42.01 2.93
2092 7321 6.899393 ATAGAACATGCCTTGAAGTTCAAA 57.101 33.333 18.55 5.42 42.01 2.69
2140 7783 9.204570 GTGACACAACTAACTTTCTACATATGT 57.795 33.333 13.93 13.93 0.00 2.29
2146 7789 9.640963 ATCTATGTGACACAACTAACTTTCTAC 57.359 33.333 13.23 0.00 0.00 2.59
2165 7808 8.851145 TCTCTAATGTCGCTTTAAGATCTATGT 58.149 33.333 0.00 0.00 0.00 2.29
2187 7830 1.757405 GCCCTGCTATCCTGACTCTCT 60.757 57.143 0.00 0.00 0.00 3.10
2191 7834 2.136878 CGGCCCTGCTATCCTGACT 61.137 63.158 0.00 0.00 0.00 3.41
2259 7953 9.056005 CAGCAATAGTTAATTTCAGTATGGCTA 57.944 33.333 11.27 0.00 35.43 3.93
2283 7977 4.527583 GGAGGCGAGCAGAGGCAG 62.528 72.222 0.00 0.00 44.61 4.85
2306 8000 1.847737 ACCACCAACCTCACCTTGTTA 59.152 47.619 0.00 0.00 0.00 2.41
2381 8075 1.154225 GTTGGCGAATGCGTTGAGG 60.154 57.895 0.00 0.00 44.10 3.86
2408 8102 2.118233 TACCGGACACAGCATGGCAA 62.118 55.000 9.46 0.00 43.62 4.52
2426 8120 4.142038 GGCCTTGTTTCCTGAAAGACTTA 58.858 43.478 0.00 0.00 34.07 2.24
2554 8248 2.360350 CCTTGGCGCACACCATCT 60.360 61.111 10.83 0.00 40.13 2.90
2745 8439 0.765510 AGGTGAGGTTTGTGAGGTCC 59.234 55.000 0.00 0.00 0.00 4.46
3112 8828 6.441274 CATGGCATATTCCAACACTATGAAC 58.559 40.000 0.00 0.00 39.96 3.18
3187 8903 2.304180 CCCCTTGGATATAGTGCTCCTG 59.696 54.545 0.00 0.00 32.47 3.86
3349 9065 1.956170 GCGCGTCCCTGATGGTATG 60.956 63.158 8.43 0.00 34.77 2.39
3376 9092 0.756442 TTGCAAGAGCCCAGCTGTTT 60.756 50.000 13.81 0.00 39.07 2.83
3406 9122 0.532573 CTTCTGCGCTCTCCCAACTA 59.467 55.000 9.73 0.00 0.00 2.24
3445 9161 0.464036 CAGCGCTACCACCTTCCATA 59.536 55.000 10.99 0.00 0.00 2.74
3488 9204 3.582647 CCAAAGGGCAAGTAAGGGAAATT 59.417 43.478 0.00 0.00 0.00 1.82
3496 9212 1.203001 CCAGTCCCAAAGGGCAAGTAA 60.203 52.381 0.00 0.00 43.94 2.24
3547 9263 6.682423 AGCATGATTTCAATCGTCACAATA 57.318 33.333 0.00 0.00 38.26 1.90
3556 9272 7.423199 TGAGATTTGCTAGCATGATTTCAATC 58.577 34.615 20.13 20.54 35.97 2.67
3693 9409 7.756722 CCAGTTTTTATTAATCTTCCAGCACTG 59.243 37.037 0.00 0.00 0.00 3.66
3758 9474 3.001939 ACTCGTGCTTAACAAAAAGTCCG 59.998 43.478 0.00 0.00 0.00 4.79
3768 9487 8.225107 TGTTTATTCAATACACTCGTGCTTAAC 58.775 33.333 0.00 0.00 0.00 2.01
3788 9507 7.958567 CGATTTTTGATGCAATGCTTTGTTTAT 59.041 29.630 6.82 6.43 35.17 1.40
3793 9512 5.518529 TCGATTTTTGATGCAATGCTTTG 57.481 34.783 6.82 7.93 35.85 2.77
3835 9554 9.890629 TGAGCATTCATGTACTAGTCTTAATTT 57.109 29.630 0.00 0.00 0.00 1.82
3856 9575 8.565896 AATGTTATAAACTGTTCAGATGAGCA 57.434 30.769 6.83 0.00 34.17 4.26
3879 9598 5.983118 TCAATCAACGAGTCGCACATATAAT 59.017 36.000 13.59 0.00 0.00 1.28
3894 9613 5.295431 TGCTAAGGACATTTCAATCAACG 57.705 39.130 0.00 0.00 0.00 4.10
3897 9616 4.334552 TGCTGCTAAGGACATTTCAATCA 58.665 39.130 0.00 0.00 0.00 2.57
3907 9626 6.284459 AGTATTGAGTATTGCTGCTAAGGAC 58.716 40.000 0.00 0.00 0.00 3.85
3914 9633 5.355350 ACAAGGAAGTATTGAGTATTGCTGC 59.645 40.000 0.00 0.00 0.00 5.25
3928 9647 7.363094 CCAAAAACCAAGTTGTACAAGGAAGTA 60.363 37.037 16.89 0.00 0.00 2.24
3953 9672 5.810080 AGCAAGGGTATCTATCTGTTACC 57.190 43.478 0.00 0.00 39.26 2.85
3958 9677 7.151308 CAGAAGTAAGCAAGGGTATCTATCTG 58.849 42.308 0.00 0.00 0.00 2.90
3960 9679 5.929415 GCAGAAGTAAGCAAGGGTATCTATC 59.071 44.000 0.00 0.00 0.00 2.08
3966 9685 1.066430 CCGCAGAAGTAAGCAAGGGTA 60.066 52.381 0.00 0.00 0.00 3.69
3968 9687 1.026718 CCCGCAGAAGTAAGCAAGGG 61.027 60.000 0.00 0.00 0.00 3.95
3970 9689 1.079503 GACCCGCAGAAGTAAGCAAG 58.920 55.000 0.00 0.00 0.00 4.01
3982 9701 1.522668 CTCTTTGATTGTGACCCGCA 58.477 50.000 0.00 0.00 0.00 5.69
3983 9702 0.169009 GCTCTTTGATTGTGACCCGC 59.831 55.000 0.00 0.00 0.00 6.13
3985 9704 2.087646 GAGGCTCTTTGATTGTGACCC 58.912 52.381 7.40 0.00 0.00 4.46
3995 9714 0.111253 AACCCACCAGAGGCTCTTTG 59.889 55.000 15.90 14.57 0.00 2.77
4013 9732 4.230455 ACCATGGTGAAGGAAAATGGAAA 58.770 39.130 18.99 0.00 40.23 3.13
4032 9751 5.447757 TGATCTCATCAATGGCAATTACCA 58.552 37.500 0.00 0.00 38.10 3.25
4070 9809 6.765512 TCAATGACACGAGGCATATTTCATTA 59.234 34.615 0.19 0.00 32.36 1.90
4071 9810 5.589855 TCAATGACACGAGGCATATTTCATT 59.410 36.000 0.19 0.00 33.53 2.57
4072 9811 5.125356 TCAATGACACGAGGCATATTTCAT 58.875 37.500 0.19 0.00 0.00 2.57
4073 9812 4.512484 TCAATGACACGAGGCATATTTCA 58.488 39.130 0.19 0.00 0.00 2.69
4078 9817 1.206849 TGCTCAATGACACGAGGCATA 59.793 47.619 0.19 0.00 0.00 3.14
4086 9825 2.859806 GCAGGTTGTTGCTCAATGACAC 60.860 50.000 0.00 0.00 40.89 3.67
4087 9826 1.337703 GCAGGTTGTTGCTCAATGACA 59.662 47.619 0.00 0.00 40.89 3.58
4093 9832 0.682532 TGGTTGCAGGTTGTTGCTCA 60.683 50.000 0.00 0.00 44.38 4.26
4095 9834 1.122227 ATTGGTTGCAGGTTGTTGCT 58.878 45.000 0.00 0.00 44.38 3.91
4099 9838 2.419851 CCAAACATTGGTTGCAGGTTGT 60.420 45.455 8.99 0.00 45.93 3.32
4158 9898 4.584325 GGCTCTATGAGAATGAGAGACAGT 59.416 45.833 2.37 0.00 34.92 3.55
4161 9901 4.584325 AGTGGCTCTATGAGAATGAGAGAC 59.416 45.833 2.37 0.00 35.35 3.36
4189 9996 3.249320 CACTTCAGATCACACACCACTTG 59.751 47.826 0.00 0.00 0.00 3.16
4190 9997 3.470709 CACTTCAGATCACACACCACTT 58.529 45.455 0.00 0.00 0.00 3.16
4192 9999 1.532868 GCACTTCAGATCACACACCAC 59.467 52.381 0.00 0.00 0.00 4.16
4233 10467 3.501828 GTGTGCATTGATGTGTGTCCTTA 59.498 43.478 0.00 0.00 0.00 2.69
4244 10478 3.719268 TGAGTTAGGGTGTGCATTGAT 57.281 42.857 0.00 0.00 0.00 2.57
4250 10484 1.533625 TGCAATGAGTTAGGGTGTGC 58.466 50.000 0.00 0.00 0.00 4.57
4314 10552 7.568349 ACATGACTACACAATGTGAGGATTAT 58.432 34.615 21.34 4.44 36.96 1.28
4317 10555 5.423015 GACATGACTACACAATGTGAGGAT 58.577 41.667 21.34 0.00 36.96 3.24
4340 10578 4.213482 AGAAAATGGAAGAGACGTTTTCCG 59.787 41.667 17.25 0.00 46.98 4.30
4347 10585 5.438761 AAACCAAGAAAATGGAAGAGACG 57.561 39.130 0.00 0.00 43.54 4.18
4357 10595 9.884636 AAAGCTACAAAGTAAAACCAAGAAAAT 57.115 25.926 0.00 0.00 0.00 1.82
4380 10618 7.751768 AAAACAGATCTTGGAGAAGGTAAAG 57.248 36.000 0.00 0.00 0.00 1.85
4400 10638 9.918630 AAGGAATGATTGCATGCTATATAAAAC 57.081 29.630 20.33 4.37 34.26 2.43
4402 10640 9.917129 CAAAGGAATGATTGCATGCTATATAAA 57.083 29.630 20.33 3.55 34.26 1.40
4403 10641 9.299465 TCAAAGGAATGATTGCATGCTATATAA 57.701 29.630 20.33 4.37 34.26 0.98
4424 10662 2.165030 GTGGCAATCCAGGACATCAAAG 59.835 50.000 0.00 0.00 44.48 2.77
4429 10667 1.076024 ACTTGTGGCAATCCAGGACAT 59.924 47.619 0.00 0.00 44.48 3.06
4467 10705 7.570607 AGATAAATCTAGTGGGAGATCAAGGTT 59.429 37.037 0.00 0.00 35.01 3.50
4502 10740 4.180057 GGAAGTAGACATGCAAGACTCAG 58.820 47.826 0.00 0.00 0.00 3.35
4504 10742 4.193826 TGGAAGTAGACATGCAAGACTC 57.806 45.455 0.00 0.00 0.00 3.36
4566 10804 4.322567 GAGAAACAGTGCCTCTTCTCATT 58.677 43.478 14.99 0.00 42.16 2.57
4569 10807 2.037772 TGGAGAAACAGTGCCTCTTCTC 59.962 50.000 12.88 12.88 41.95 2.87
4599 10838 9.953565 ATCATGTTGAATGAAGAATCCAAAAAT 57.046 25.926 0.00 0.00 0.00 1.82
4630 10869 2.622436 GCCAACACTAGAGATGGTGAC 58.378 52.381 15.96 0.00 36.87 3.67
4664 10903 2.229675 TGTGTCACTCAGCAGTTCAG 57.770 50.000 4.27 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.