Multiple sequence alignment - TraesCS2A01G045600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G045600 chr2A 100.000 5430 0 0 1 5430 17892131 17897560 0.000000e+00 10028.0
1 TraesCS2A01G045600 chr2A 94.172 652 38 0 1885 2536 138922379 138923030 0.000000e+00 994.0
2 TraesCS2A01G045600 chr2A 81.627 762 81 35 874 1588 17981264 17982013 1.310000e-160 577.0
3 TraesCS2A01G045600 chr2A 85.739 568 43 19 1060 1592 18006566 18007130 2.840000e-157 566.0
4 TraesCS2A01G045600 chr2A 81.579 494 89 2 4223 4715 769759000 769759492 1.820000e-109 407.0
5 TraesCS2A01G045600 chr5A 97.257 1203 30 3 4229 5430 219581442 219580242 0.000000e+00 2036.0
6 TraesCS2A01G045600 chr5A 97.174 1203 33 1 4229 5430 470338068 470336866 0.000000e+00 2032.0
7 TraesCS2A01G045600 chr5A 86.056 251 28 7 551 796 426897658 426897906 4.170000e-66 263.0
8 TraesCS2A01G045600 chr6A 97.007 1203 33 3 4229 5430 325901416 325902616 0.000000e+00 2019.0
9 TraesCS2A01G045600 chr6A 88.462 650 61 10 4794 5430 447497865 447497217 0.000000e+00 773.0
10 TraesCS2A01G045600 chr2B 95.861 894 33 1 3339 4228 28256667 28257560 0.000000e+00 1443.0
11 TraesCS2A01G045600 chr2B 94.589 887 45 3 849 1734 28254476 28255360 0.000000e+00 1369.0
12 TraesCS2A01G045600 chr2B 93.987 765 36 6 2587 3343 28255852 28256614 0.000000e+00 1149.0
13 TraesCS2A01G045600 chr2B 85.816 564 46 16 1060 1590 28331677 28332239 7.890000e-158 568.0
14 TraesCS2A01G045600 chr2B 85.563 568 44 19 1060 1592 28349250 28349814 1.320000e-155 560.0
15 TraesCS2A01G045600 chr2B 86.139 505 46 9 1060 1540 28292180 28292684 1.730000e-144 523.0
16 TraesCS2A01G045600 chr2B 92.962 341 21 3 17 357 28253903 28254240 1.360000e-135 494.0
17 TraesCS2A01G045600 chr2B 92.029 138 6 2 419 556 28254248 28254380 7.180000e-44 189.0
18 TraesCS2A01G045600 chr2B 86.508 126 13 4 554 676 761973199 761973075 9.490000e-28 135.0
19 TraesCS2A01G045600 chr2B 97.674 43 1 0 807 849 28254375 28254417 2.100000e-09 75.0
20 TraesCS2A01G045600 chr3D 94.012 668 39 1 1881 2548 597288358 597289024 0.000000e+00 1011.0
21 TraesCS2A01G045600 chr3D 82.751 916 129 20 4229 5127 274456264 274455361 0.000000e+00 789.0
22 TraesCS2A01G045600 chr3D 95.276 254 9 3 550 800 590117757 590117504 3.050000e-107 399.0
23 TraesCS2A01G045600 chr3D 80.220 364 62 5 4441 4797 547597771 547598131 1.160000e-66 265.0
24 TraesCS2A01G045600 chr7D 94.368 657 37 0 1886 2542 2260231 2260887 0.000000e+00 1009.0
25 TraesCS2A01G045600 chr7D 82.751 916 129 20 4229 5127 47017420 47016517 0.000000e+00 789.0
26 TraesCS2A01G045600 chr7D 86.903 649 59 11 4801 5430 184039975 184039334 0.000000e+00 704.0
27 TraesCS2A01G045600 chr1B 94.216 657 38 0 1880 2536 453521958 453522614 0.000000e+00 1003.0
28 TraesCS2A01G045600 chr1B 87.673 649 66 5 4795 5430 393649604 393650251 0.000000e+00 743.0
29 TraesCS2A01G045600 chr5D 93.949 661 38 1 1887 2547 465903026 465903684 0.000000e+00 998.0
30 TraesCS2A01G045600 chr5D 81.915 94 17 0 220 313 10072474 10072567 4.510000e-11 80.5
31 TraesCS2A01G045600 chr3B 94.325 652 35 2 1885 2536 12765069 12765718 0.000000e+00 998.0
32 TraesCS2A01G045600 chr3B 94.018 652 39 0 1885 2536 27513582 27514233 0.000000e+00 989.0
33 TraesCS2A01G045600 chr3B 83.217 143 21 3 173 315 558082725 558082586 1.590000e-25 128.0
34 TraesCS2A01G045600 chr4A 94.037 654 38 1 1886 2539 69306109 69305457 0.000000e+00 990.0
35 TraesCS2A01G045600 chr4A 84.615 156 19 5 554 706 636373351 636373198 3.390000e-32 150.0
36 TraesCS2A01G045600 chr1D 93.524 664 41 1 1885 2548 235679547 235680208 0.000000e+00 987.0
37 TraesCS2A01G045600 chr1D 100.000 29 0 0 283 311 443949449 443949477 3.000000e-03 54.7
38 TraesCS2A01G045600 chr7B 94.401 643 29 3 4795 5430 636820318 636820960 0.000000e+00 981.0
39 TraesCS2A01G045600 chr7B 93.997 583 24 6 4229 4800 636819708 636820290 0.000000e+00 872.0
40 TraesCS2A01G045600 chr7B 86.275 153 16 5 550 700 739990435 739990584 1.570000e-35 161.0
41 TraesCS2A01G045600 chr5B 88.444 649 61 7 4795 5430 187091380 187092027 0.000000e+00 771.0
42 TraesCS2A01G045600 chr5B 83.507 576 90 3 4229 4800 638280175 638279601 2.880000e-147 532.0
43 TraesCS2A01G045600 chr5B 81.044 364 60 7 4441 4800 187090982 187091340 1.150000e-71 281.0
44 TraesCS2A01G045600 chr3A 81.223 916 142 21 4229 5127 743057773 743058675 0.000000e+00 712.0
45 TraesCS2A01G045600 chr3A 86.412 655 64 9 4795 5430 739891026 739891674 0.000000e+00 693.0
46 TraesCS2A01G045600 chr2D 84.211 741 82 15 849 1555 16015519 16016258 0.000000e+00 688.0
47 TraesCS2A01G045600 chr2D 85.481 613 45 20 1015 1592 16232552 16233155 2.800000e-167 599.0
48 TraesCS2A01G045600 chr2D 86.170 564 45 17 1060 1590 16124694 16125257 3.650000e-161 579.0
49 TraesCS2A01G045600 chr2D 81.267 363 62 4 4441 4800 339491812 339492171 6.880000e-74 289.0
50 TraesCS2A01G045600 chr4D 81.267 363 62 4 4441 4800 330119856 330120215 6.880000e-74 289.0
51 TraesCS2A01G045600 chr1A 87.037 162 15 5 554 711 1821262 1821421 1.550000e-40 178.0
52 TraesCS2A01G045600 chr7A 84.277 159 18 7 554 708 3535578 3535423 1.220000e-31 148.0
53 TraesCS2A01G045600 chr7A 93.548 62 3 1 554 614 679034131 679034192 2.080000e-14 91.6
54 TraesCS2A01G045600 chr7A 90.769 65 5 1 554 617 50228950 50228886 9.690000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G045600 chr2A 17892131 17897560 5429 False 10028.0 10028 100.000 1 5430 1 chr2A.!!$F1 5429
1 TraesCS2A01G045600 chr2A 138922379 138923030 651 False 994.0 994 94.172 1885 2536 1 chr2A.!!$F4 651
2 TraesCS2A01G045600 chr2A 17981264 17982013 749 False 577.0 577 81.627 874 1588 1 chr2A.!!$F2 714
3 TraesCS2A01G045600 chr2A 18006566 18007130 564 False 566.0 566 85.739 1060 1592 1 chr2A.!!$F3 532
4 TraesCS2A01G045600 chr5A 219580242 219581442 1200 True 2036.0 2036 97.257 4229 5430 1 chr5A.!!$R1 1201
5 TraesCS2A01G045600 chr5A 470336866 470338068 1202 True 2032.0 2032 97.174 4229 5430 1 chr5A.!!$R2 1201
6 TraesCS2A01G045600 chr6A 325901416 325902616 1200 False 2019.0 2019 97.007 4229 5430 1 chr6A.!!$F1 1201
7 TraesCS2A01G045600 chr6A 447497217 447497865 648 True 773.0 773 88.462 4794 5430 1 chr6A.!!$R1 636
8 TraesCS2A01G045600 chr2B 28253903 28257560 3657 False 786.5 1443 94.517 17 4228 6 chr2B.!!$F4 4211
9 TraesCS2A01G045600 chr2B 28331677 28332239 562 False 568.0 568 85.816 1060 1590 1 chr2B.!!$F2 530
10 TraesCS2A01G045600 chr2B 28349250 28349814 564 False 560.0 560 85.563 1060 1592 1 chr2B.!!$F3 532
11 TraesCS2A01G045600 chr2B 28292180 28292684 504 False 523.0 523 86.139 1060 1540 1 chr2B.!!$F1 480
12 TraesCS2A01G045600 chr3D 597288358 597289024 666 False 1011.0 1011 94.012 1881 2548 1 chr3D.!!$F2 667
13 TraesCS2A01G045600 chr3D 274455361 274456264 903 True 789.0 789 82.751 4229 5127 1 chr3D.!!$R1 898
14 TraesCS2A01G045600 chr7D 2260231 2260887 656 False 1009.0 1009 94.368 1886 2542 1 chr7D.!!$F1 656
15 TraesCS2A01G045600 chr7D 47016517 47017420 903 True 789.0 789 82.751 4229 5127 1 chr7D.!!$R1 898
16 TraesCS2A01G045600 chr7D 184039334 184039975 641 True 704.0 704 86.903 4801 5430 1 chr7D.!!$R2 629
17 TraesCS2A01G045600 chr1B 453521958 453522614 656 False 1003.0 1003 94.216 1880 2536 1 chr1B.!!$F2 656
18 TraesCS2A01G045600 chr1B 393649604 393650251 647 False 743.0 743 87.673 4795 5430 1 chr1B.!!$F1 635
19 TraesCS2A01G045600 chr5D 465903026 465903684 658 False 998.0 998 93.949 1887 2547 1 chr5D.!!$F2 660
20 TraesCS2A01G045600 chr3B 12765069 12765718 649 False 998.0 998 94.325 1885 2536 1 chr3B.!!$F1 651
21 TraesCS2A01G045600 chr3B 27513582 27514233 651 False 989.0 989 94.018 1885 2536 1 chr3B.!!$F2 651
22 TraesCS2A01G045600 chr4A 69305457 69306109 652 True 990.0 990 94.037 1886 2539 1 chr4A.!!$R1 653
23 TraesCS2A01G045600 chr1D 235679547 235680208 661 False 987.0 987 93.524 1885 2548 1 chr1D.!!$F1 663
24 TraesCS2A01G045600 chr7B 636819708 636820960 1252 False 926.5 981 94.199 4229 5430 2 chr7B.!!$F2 1201
25 TraesCS2A01G045600 chr5B 638279601 638280175 574 True 532.0 532 83.507 4229 4800 1 chr5B.!!$R1 571
26 TraesCS2A01G045600 chr5B 187090982 187092027 1045 False 526.0 771 84.744 4441 5430 2 chr5B.!!$F1 989
27 TraesCS2A01G045600 chr3A 743057773 743058675 902 False 712.0 712 81.223 4229 5127 1 chr3A.!!$F2 898
28 TraesCS2A01G045600 chr3A 739891026 739891674 648 False 693.0 693 86.412 4795 5430 1 chr3A.!!$F1 635
29 TraesCS2A01G045600 chr2D 16015519 16016258 739 False 688.0 688 84.211 849 1555 1 chr2D.!!$F1 706
30 TraesCS2A01G045600 chr2D 16232552 16233155 603 False 599.0 599 85.481 1015 1592 1 chr2D.!!$F3 577
31 TraesCS2A01G045600 chr2D 16124694 16125257 563 False 579.0 579 86.170 1060 1590 1 chr2D.!!$F2 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 593 0.037419 CAAAGCCCCGGTTCCAATTG 60.037 55.0 0.00 0.00 0.00 2.32 F
753 754 0.038801 GTTCCAAAAGGAGCTGCAGC 60.039 55.0 31.53 31.53 42.49 5.25 F
786 787 0.162933 TCAAACGAAATCACGCGCTC 59.837 50.0 5.73 0.00 36.70 5.03 F
2011 2142 0.318441 TACAAGCACTGAAGCGAGCT 59.682 50.0 0.00 0.00 40.15 4.09 F
2561 2738 0.320374 TACTTGCAACCGAGTGAGGG 59.680 55.0 0.00 0.00 36.37 4.30 F
4117 4363 0.318762 AAGAGACACTTCGGCTCCAC 59.681 55.0 0.00 0.00 32.91 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 2308 0.101040 TGTCCGTCTTCGTTCGTGTT 59.899 50.000 0.00 0.00 35.01 3.32 R
2553 2730 0.394625 AGAGACCGCTACCCTCACTC 60.395 60.000 0.00 0.00 0.00 3.51 R
2563 2740 0.558712 AGGGGAAGATAGAGACCGCT 59.441 55.000 0.00 0.00 40.07 5.52 R
3431 3677 0.323999 TGCATTTGGAGGCTGCATCT 60.324 50.000 10.27 0.00 40.75 2.90 R
4186 4432 0.107643 TGATGGTGCGTGTTCCTGAA 59.892 50.000 0.00 0.00 0.00 3.02 R
5234 5600 8.800370 TTTTACATCACATATGGCAGAACTAA 57.200 30.769 7.80 0.75 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.240256 TGTGTTACCATGGTTTCGGC 58.760 50.000 25.38 10.62 0.00 5.54
20 21 0.167251 GTGTTACCATGGTTTCGGCG 59.833 55.000 25.38 0.00 0.00 6.46
35 36 2.423446 GCGGTGATGGCTCCCTAG 59.577 66.667 0.00 0.00 0.00 3.02
88 89 4.263572 CCCTGGCGTGTTGGGTCA 62.264 66.667 0.00 0.00 36.32 4.02
98 99 1.110442 TGTTGGGTCAGCAACTTTGG 58.890 50.000 0.00 0.00 32.91 3.28
102 103 2.582052 TGGGTCAGCAACTTTGGTTAG 58.418 47.619 0.00 0.00 36.65 2.34
107 108 2.173782 TCAGCAACTTTGGTTAGGTGGA 59.826 45.455 0.00 0.00 36.65 4.02
163 164 3.557054 GCTATGGCGTCAATGATAGGGAA 60.557 47.826 0.00 0.00 0.00 3.97
171 172 0.179018 AATGATAGGGAAGCCACGGC 60.179 55.000 0.00 0.00 42.33 5.68
212 213 6.214412 GGAGGTGATATTATTGGTCTCCTCAT 59.786 42.308 18.68 0.00 46.68 2.90
238 239 0.182775 AGGGCTCCGTTGTGAAAACT 59.817 50.000 0.00 0.00 0.00 2.66
254 255 3.436577 AAACTCTAGTCCGGTCTCTCA 57.563 47.619 3.91 0.00 0.00 3.27
261 262 2.438614 CCGGTCTCTCAGGCTCGA 60.439 66.667 0.00 0.00 0.00 4.04
303 304 3.382832 CCCTCTTGAGGGCGTCGT 61.383 66.667 21.32 0.00 42.99 4.34
341 342 4.039124 CCCTTTTGTTTGTAGCTGGTCATT 59.961 41.667 0.00 0.00 0.00 2.57
344 345 3.222173 TGTTTGTAGCTGGTCATTGGT 57.778 42.857 0.00 0.00 0.00 3.67
348 349 5.105146 TGTTTGTAGCTGGTCATTGGTTTTT 60.105 36.000 0.00 0.00 0.00 1.94
349 350 4.582701 TGTAGCTGGTCATTGGTTTTTG 57.417 40.909 0.00 0.00 0.00 2.44
351 352 1.693606 AGCTGGTCATTGGTTTTTGGG 59.306 47.619 0.00 0.00 0.00 4.12
354 355 3.684130 GCTGGTCATTGGTTTTTGGGTTT 60.684 43.478 0.00 0.00 0.00 3.27
355 356 3.876320 CTGGTCATTGGTTTTTGGGTTTG 59.124 43.478 0.00 0.00 0.00 2.93
358 359 3.559655 GTCATTGGTTTTTGGGTTTGCTC 59.440 43.478 0.00 0.00 0.00 4.26
359 360 2.700722 TTGGTTTTTGGGTTTGCTCC 57.299 45.000 0.00 0.00 0.00 4.70
360 361 1.573108 TGGTTTTTGGGTTTGCTCCA 58.427 45.000 0.00 0.00 0.00 3.86
361 362 1.909302 TGGTTTTTGGGTTTGCTCCAA 59.091 42.857 0.00 0.00 41.97 3.53
362 363 2.507471 TGGTTTTTGGGTTTGCTCCAAT 59.493 40.909 0.00 0.00 43.01 3.16
363 364 3.711704 TGGTTTTTGGGTTTGCTCCAATA 59.288 39.130 0.00 0.00 43.01 1.90
364 365 4.202305 TGGTTTTTGGGTTTGCTCCAATAG 60.202 41.667 0.00 0.00 43.01 1.73
365 366 4.314961 GTTTTTGGGTTTGCTCCAATAGG 58.685 43.478 0.00 0.00 43.01 2.57
366 367 1.555967 TTGGGTTTGCTCCAATAGGC 58.444 50.000 0.00 0.00 39.15 3.93
367 368 0.679640 TGGGTTTGCTCCAATAGGCG 60.680 55.000 0.00 0.00 33.74 5.52
368 369 1.433471 GGTTTGCTCCAATAGGCGC 59.567 57.895 0.00 0.00 45.93 6.53
372 373 3.272334 GCTCCAATAGGCGCGTGG 61.272 66.667 13.84 12.03 35.65 4.94
373 374 2.186903 CTCCAATAGGCGCGTGGT 59.813 61.111 13.84 0.00 33.88 4.16
374 375 1.449601 CTCCAATAGGCGCGTGGTT 60.450 57.895 13.84 4.79 33.88 3.67
375 376 1.705337 CTCCAATAGGCGCGTGGTTG 61.705 60.000 13.84 16.25 33.88 3.77
376 377 2.038269 CCAATAGGCGCGTGGTTGT 61.038 57.895 13.84 0.00 0.00 3.32
377 378 1.134487 CAATAGGCGCGTGGTTGTG 59.866 57.895 13.84 0.00 0.00 3.33
378 379 2.686816 AATAGGCGCGTGGTTGTGC 61.687 57.895 13.84 0.00 44.48 4.57
398 399 3.781341 CGGCGCGCTAAAATATTCTAA 57.219 42.857 32.29 0.00 0.00 2.10
399 400 4.322101 CGGCGCGCTAAAATATTCTAAT 57.678 40.909 32.29 0.00 0.00 1.73
400 401 4.081761 CGGCGCGCTAAAATATTCTAATG 58.918 43.478 32.29 0.00 0.00 1.90
401 402 4.377022 CGGCGCGCTAAAATATTCTAATGT 60.377 41.667 32.29 0.00 0.00 2.71
402 403 5.449304 GGCGCGCTAAAATATTCTAATGTT 58.551 37.500 32.29 0.00 0.00 2.71
403 404 5.564127 GGCGCGCTAAAATATTCTAATGTTC 59.436 40.000 32.29 2.61 0.00 3.18
404 405 6.363473 GCGCGCTAAAATATTCTAATGTTCT 58.637 36.000 26.67 0.00 0.00 3.01
405 406 6.516695 GCGCGCTAAAATATTCTAATGTTCTC 59.483 38.462 26.67 0.00 0.00 2.87
406 407 7.569591 GCGCGCTAAAATATTCTAATGTTCTCT 60.570 37.037 26.67 0.00 0.00 3.10
407 408 8.276325 CGCGCTAAAATATTCTAATGTTCTCTT 58.724 33.333 5.56 0.00 0.00 2.85
507 508 3.782443 GCCGTGGGGTGGTCCTAG 61.782 72.222 0.00 0.00 34.97 3.02
512 513 0.323957 GTGGGGTGGTCCTAGTGTTC 59.676 60.000 0.00 0.00 35.33 3.18
523 524 7.147532 GGTGGTCCTAGTGTTCTCCTATTTTAT 60.148 40.741 0.00 0.00 0.00 1.40
524 525 8.921205 GTGGTCCTAGTGTTCTCCTATTTTATA 58.079 37.037 0.00 0.00 0.00 0.98
525 526 9.144298 TGGTCCTAGTGTTCTCCTATTTTATAG 57.856 37.037 0.00 0.00 0.00 1.31
526 527 8.089597 GGTCCTAGTGTTCTCCTATTTTATAGC 58.910 40.741 0.00 0.00 0.00 2.97
552 553 1.760192 AGTCTTCATGGCCTGCATTC 58.240 50.000 3.32 0.00 0.00 2.67
553 554 1.284198 AGTCTTCATGGCCTGCATTCT 59.716 47.619 3.32 0.00 0.00 2.40
554 555 2.097825 GTCTTCATGGCCTGCATTCTT 58.902 47.619 3.32 0.00 0.00 2.52
555 556 2.494870 GTCTTCATGGCCTGCATTCTTT 59.505 45.455 3.32 0.00 0.00 2.52
556 557 3.056322 GTCTTCATGGCCTGCATTCTTTT 60.056 43.478 3.32 0.00 0.00 2.27
557 558 3.579586 TCTTCATGGCCTGCATTCTTTTT 59.420 39.130 3.32 0.00 0.00 1.94
579 580 6.799926 TTTTAATGAAAATGGCTCAAAGCC 57.200 33.333 11.09 11.09 44.34 4.35
580 581 5.704978 TTTTAATGAAAATGGCTCAAAGCCC 59.295 36.000 15.10 0.29 43.90 5.19
581 582 7.245466 TTTTAATGAAAATGGCTCAAAGCCCC 61.245 38.462 15.10 1.05 43.90 5.80
587 588 3.062466 GCTCAAAGCCCCGGTTCC 61.062 66.667 0.00 0.00 34.48 3.62
588 589 2.434331 CTCAAAGCCCCGGTTCCA 59.566 61.111 0.00 0.00 0.00 3.53
589 590 1.228429 CTCAAAGCCCCGGTTCCAA 60.228 57.895 0.00 0.00 0.00 3.53
590 591 0.611896 CTCAAAGCCCCGGTTCCAAT 60.612 55.000 0.00 0.00 0.00 3.16
591 592 0.178947 TCAAAGCCCCGGTTCCAATT 60.179 50.000 0.00 0.00 0.00 2.32
592 593 0.037419 CAAAGCCCCGGTTCCAATTG 60.037 55.000 0.00 0.00 0.00 2.32
593 594 1.191489 AAAGCCCCGGTTCCAATTGG 61.191 55.000 19.08 19.08 0.00 3.16
594 595 2.036572 GCCCCGGTTCCAATTGGA 59.963 61.111 23.63 23.63 43.73 3.53
595 596 1.381191 GCCCCGGTTCCAATTGGAT 60.381 57.895 27.53 0.00 44.98 3.41
596 597 0.975556 GCCCCGGTTCCAATTGGATT 60.976 55.000 27.53 0.00 44.98 3.01
597 598 1.686741 GCCCCGGTTCCAATTGGATTA 60.687 52.381 27.53 11.49 44.98 1.75
598 599 2.028876 CCCCGGTTCCAATTGGATTAC 58.971 52.381 27.53 22.03 44.98 1.89
599 600 2.028876 CCCGGTTCCAATTGGATTACC 58.971 52.381 28.23 28.23 44.98 2.85
600 601 2.621929 CCCGGTTCCAATTGGATTACCA 60.622 50.000 33.12 17.45 42.57 3.25
614 615 4.517453 TGGATTACCAAAAGAAACCAGACG 59.483 41.667 0.00 0.00 43.91 4.18
615 616 4.758165 GGATTACCAAAAGAAACCAGACGA 59.242 41.667 0.00 0.00 35.97 4.20
616 617 5.106673 GGATTACCAAAAGAAACCAGACGAG 60.107 44.000 0.00 0.00 35.97 4.18
617 618 2.572290 ACCAAAAGAAACCAGACGAGG 58.428 47.619 0.00 0.00 0.00 4.63
618 619 2.092592 ACCAAAAGAAACCAGACGAGGT 60.093 45.455 0.00 0.00 45.91 3.85
619 620 2.548480 CCAAAAGAAACCAGACGAGGTC 59.452 50.000 0.00 0.00 42.25 3.85
620 621 2.545537 AAAGAAACCAGACGAGGTCC 57.454 50.000 0.00 0.00 42.25 4.46
621 622 1.420430 AAGAAACCAGACGAGGTCCA 58.580 50.000 0.00 0.00 42.25 4.02
622 623 1.420430 AGAAACCAGACGAGGTCCAA 58.580 50.000 0.00 0.00 42.25 3.53
623 624 1.978580 AGAAACCAGACGAGGTCCAAT 59.021 47.619 0.00 0.00 42.25 3.16
624 625 2.028020 AGAAACCAGACGAGGTCCAATC 60.028 50.000 0.00 0.00 42.25 2.67
625 626 0.613777 AACCAGACGAGGTCCAATCC 59.386 55.000 0.00 0.00 42.25 3.01
626 627 1.141881 CCAGACGAGGTCCAATCCG 59.858 63.158 0.00 0.00 32.18 4.18
627 628 1.605058 CCAGACGAGGTCCAATCCGT 61.605 60.000 0.00 0.00 38.01 4.69
628 629 0.246635 CAGACGAGGTCCAATCCGTT 59.753 55.000 0.00 0.00 35.22 4.44
629 630 1.475280 CAGACGAGGTCCAATCCGTTA 59.525 52.381 0.00 0.00 35.22 3.18
630 631 1.475682 AGACGAGGTCCAATCCGTTAC 59.524 52.381 0.00 0.00 35.22 2.50
631 632 1.203052 GACGAGGTCCAATCCGTTACA 59.797 52.381 0.00 0.00 35.22 2.41
632 633 1.619827 ACGAGGTCCAATCCGTTACAA 59.380 47.619 0.00 0.00 30.41 2.41
633 634 2.268298 CGAGGTCCAATCCGTTACAAG 58.732 52.381 0.00 0.00 0.00 3.16
634 635 2.353406 CGAGGTCCAATCCGTTACAAGT 60.353 50.000 0.00 0.00 0.00 3.16
635 636 3.119388 CGAGGTCCAATCCGTTACAAGTA 60.119 47.826 0.00 0.00 0.00 2.24
636 637 4.179298 GAGGTCCAATCCGTTACAAGTAC 58.821 47.826 0.00 0.00 0.00 2.73
637 638 2.925563 GGTCCAATCCGTTACAAGTACG 59.074 50.000 0.00 0.00 38.67 3.67
638 639 2.346545 GTCCAATCCGTTACAAGTACGC 59.653 50.000 0.00 0.00 37.67 4.42
639 640 1.322338 CCAATCCGTTACAAGTACGCG 59.678 52.381 3.53 3.53 37.67 6.01
640 641 1.322338 CAATCCGTTACAAGTACGCGG 59.678 52.381 12.47 13.11 43.32 6.46
641 642 0.179129 ATCCGTTACAAGTACGCGGG 60.179 55.000 12.47 0.00 42.35 6.13
642 643 1.806758 CCGTTACAAGTACGCGGGG 60.807 63.158 12.47 0.00 38.86 5.73
643 644 1.806758 CGTTACAAGTACGCGGGGG 60.807 63.158 12.47 0.00 31.73 5.40
659 660 1.308998 GGGGGAATAATCAGCACACG 58.691 55.000 0.00 0.00 0.00 4.49
660 661 0.663153 GGGGAATAATCAGCACACGC 59.337 55.000 0.00 0.00 38.99 5.34
661 662 1.378531 GGGAATAATCAGCACACGCA 58.621 50.000 0.00 0.00 42.27 5.24
662 663 1.064060 GGGAATAATCAGCACACGCAC 59.936 52.381 0.00 0.00 42.27 5.34
663 664 2.009774 GGAATAATCAGCACACGCACT 58.990 47.619 0.00 0.00 42.27 4.40
664 665 2.223112 GGAATAATCAGCACACGCACTG 60.223 50.000 0.00 0.00 42.27 3.66
665 666 0.729116 ATAATCAGCACACGCACTGC 59.271 50.000 0.00 0.00 42.27 4.40
666 667 1.298157 TAATCAGCACACGCACTGCC 61.298 55.000 0.00 0.00 42.27 4.85
681 682 3.379880 GCCCCAGCAAAATGAGCA 58.620 55.556 0.00 0.00 39.53 4.26
682 683 1.217244 GCCCCAGCAAAATGAGCAG 59.783 57.895 0.00 0.00 39.53 4.24
683 684 1.252904 GCCCCAGCAAAATGAGCAGA 61.253 55.000 0.00 0.00 39.53 4.26
684 685 0.529378 CCCCAGCAAAATGAGCAGAC 59.471 55.000 0.00 0.00 0.00 3.51
685 686 0.529378 CCCAGCAAAATGAGCAGACC 59.471 55.000 0.00 0.00 0.00 3.85
686 687 0.169672 CCAGCAAAATGAGCAGACCG 59.830 55.000 0.00 0.00 0.00 4.79
687 688 0.877071 CAGCAAAATGAGCAGACCGT 59.123 50.000 0.00 0.00 0.00 4.83
688 689 0.877071 AGCAAAATGAGCAGACCGTG 59.123 50.000 0.00 0.00 0.00 4.94
706 707 3.569210 CCCACAGGGCCACAGTCA 61.569 66.667 6.18 0.00 35.35 3.41
707 708 2.281761 CCACAGGGCCACAGTCAC 60.282 66.667 6.18 0.00 0.00 3.67
708 709 2.281761 CACAGGGCCACAGTCACC 60.282 66.667 6.18 0.00 0.00 4.02
709 710 2.772191 ACAGGGCCACAGTCACCA 60.772 61.111 6.18 0.00 0.00 4.17
710 711 2.382770 ACAGGGCCACAGTCACCAA 61.383 57.895 6.18 0.00 0.00 3.67
711 712 1.075482 CAGGGCCACAGTCACCAAT 59.925 57.895 6.18 0.00 0.00 3.16
712 713 0.540365 CAGGGCCACAGTCACCAATT 60.540 55.000 6.18 0.00 0.00 2.32
713 714 0.188342 AGGGCCACAGTCACCAATTT 59.812 50.000 6.18 0.00 0.00 1.82
714 715 1.427368 AGGGCCACAGTCACCAATTTA 59.573 47.619 6.18 0.00 0.00 1.40
715 716 1.818674 GGGCCACAGTCACCAATTTAG 59.181 52.381 4.39 0.00 0.00 1.85
716 717 1.818674 GGCCACAGTCACCAATTTAGG 59.181 52.381 0.00 0.00 0.00 2.69
717 718 2.554344 GGCCACAGTCACCAATTTAGGA 60.554 50.000 0.00 0.00 0.00 2.94
718 719 2.749621 GCCACAGTCACCAATTTAGGAG 59.250 50.000 0.00 0.00 0.00 3.69
719 720 3.559171 GCCACAGTCACCAATTTAGGAGA 60.559 47.826 0.00 0.00 0.00 3.71
720 721 4.651778 CCACAGTCACCAATTTAGGAGAA 58.348 43.478 0.00 0.00 29.93 2.87
721 722 5.070001 CCACAGTCACCAATTTAGGAGAAA 58.930 41.667 0.00 0.00 29.93 2.52
722 723 5.711976 CCACAGTCACCAATTTAGGAGAAAT 59.288 40.000 0.00 0.00 29.93 2.17
723 724 6.884295 CCACAGTCACCAATTTAGGAGAAATA 59.116 38.462 0.00 0.00 29.93 1.40
724 725 7.557719 CCACAGTCACCAATTTAGGAGAAATAT 59.442 37.037 0.00 0.00 29.93 1.28
725 726 9.613428 CACAGTCACCAATTTAGGAGAAATATA 57.387 33.333 0.00 0.00 29.93 0.86
739 740 8.934023 AGGAGAAATATAACAACAAAGTTCCA 57.066 30.769 0.00 0.00 33.07 3.53
740 741 9.362151 AGGAGAAATATAACAACAAAGTTCCAA 57.638 29.630 0.00 0.00 33.07 3.53
741 742 9.974980 GGAGAAATATAACAACAAAGTTCCAAA 57.025 29.630 0.00 0.00 33.07 3.28
746 747 9.981114 AATATAACAACAAAGTTCCAAAAGGAG 57.019 29.630 0.00 0.00 33.07 3.69
747 748 4.123497 ACAACAAAGTTCCAAAAGGAGC 57.877 40.909 0.00 0.00 0.00 4.70
748 749 3.769300 ACAACAAAGTTCCAAAAGGAGCT 59.231 39.130 0.00 0.00 0.00 4.09
749 750 4.114794 CAACAAAGTTCCAAAAGGAGCTG 58.885 43.478 0.00 0.00 30.20 4.24
750 751 2.101415 ACAAAGTTCCAAAAGGAGCTGC 59.899 45.455 0.00 0.00 30.20 5.25
751 752 2.071778 AAGTTCCAAAAGGAGCTGCA 57.928 45.000 8.35 0.00 30.20 4.41
752 753 1.613836 AGTTCCAAAAGGAGCTGCAG 58.386 50.000 10.11 10.11 0.00 4.41
753 754 0.038801 GTTCCAAAAGGAGCTGCAGC 60.039 55.000 31.53 31.53 42.49 5.25
754 755 0.467844 TTCCAAAAGGAGCTGCAGCA 60.468 50.000 38.24 13.55 45.16 4.41
755 756 0.467844 TCCAAAAGGAGCTGCAGCAA 60.468 50.000 38.24 10.53 45.16 3.91
756 757 0.390124 CCAAAAGGAGCTGCAGCAAA 59.610 50.000 38.24 0.00 45.16 3.68
757 758 1.494824 CAAAAGGAGCTGCAGCAAAC 58.505 50.000 38.24 26.59 45.16 2.93
758 759 1.113788 AAAAGGAGCTGCAGCAAACA 58.886 45.000 38.24 0.00 45.16 2.83
759 760 1.335145 AAAGGAGCTGCAGCAAACAT 58.665 45.000 38.24 23.57 45.16 2.71
760 761 2.205022 AAGGAGCTGCAGCAAACATA 57.795 45.000 38.24 0.00 45.16 2.29
761 762 2.431954 AGGAGCTGCAGCAAACATAT 57.568 45.000 38.24 17.87 45.16 1.78
762 763 3.565764 AGGAGCTGCAGCAAACATATA 57.434 42.857 38.24 0.00 45.16 0.86
763 764 3.474600 AGGAGCTGCAGCAAACATATAG 58.525 45.455 38.24 0.00 45.16 1.31
764 765 2.551459 GGAGCTGCAGCAAACATATAGG 59.449 50.000 38.24 0.00 45.16 2.57
765 766 2.551459 GAGCTGCAGCAAACATATAGGG 59.449 50.000 38.24 0.00 45.16 3.53
766 767 2.173356 AGCTGCAGCAAACATATAGGGA 59.827 45.455 38.24 0.00 45.16 4.20
767 768 3.152341 GCTGCAGCAAACATATAGGGAT 58.848 45.455 33.36 0.00 41.59 3.85
768 769 3.190118 GCTGCAGCAAACATATAGGGATC 59.810 47.826 33.36 0.00 41.59 3.36
769 770 4.392047 CTGCAGCAAACATATAGGGATCA 58.608 43.478 0.00 0.00 0.00 2.92
770 771 4.790937 TGCAGCAAACATATAGGGATCAA 58.209 39.130 0.00 0.00 0.00 2.57
771 772 5.199723 TGCAGCAAACATATAGGGATCAAA 58.800 37.500 0.00 0.00 0.00 2.69
772 773 5.067674 TGCAGCAAACATATAGGGATCAAAC 59.932 40.000 0.00 0.00 0.00 2.93
773 774 5.751680 CAGCAAACATATAGGGATCAAACG 58.248 41.667 0.00 0.00 0.00 3.60
774 775 5.527214 CAGCAAACATATAGGGATCAAACGA 59.473 40.000 0.00 0.00 0.00 3.85
775 776 6.038161 CAGCAAACATATAGGGATCAAACGAA 59.962 38.462 0.00 0.00 0.00 3.85
776 777 6.601613 AGCAAACATATAGGGATCAAACGAAA 59.398 34.615 0.00 0.00 0.00 3.46
777 778 7.285401 AGCAAACATATAGGGATCAAACGAAAT 59.715 33.333 0.00 0.00 0.00 2.17
778 779 7.591426 GCAAACATATAGGGATCAAACGAAATC 59.409 37.037 0.00 0.00 0.00 2.17
779 780 8.620416 CAAACATATAGGGATCAAACGAAATCA 58.380 33.333 0.00 0.00 0.00 2.57
780 781 7.730364 ACATATAGGGATCAAACGAAATCAC 57.270 36.000 0.00 0.00 0.00 3.06
781 782 6.423905 ACATATAGGGATCAAACGAAATCACG 59.576 38.462 0.00 0.00 39.31 4.35
782 783 1.737793 AGGGATCAAACGAAATCACGC 59.262 47.619 0.00 0.00 36.70 5.34
783 784 1.529010 GGGATCAAACGAAATCACGCG 60.529 52.381 3.53 3.53 36.70 6.01
784 785 1.171876 GATCAAACGAAATCACGCGC 58.828 50.000 5.73 0.00 36.70 6.86
785 786 0.796312 ATCAAACGAAATCACGCGCT 59.204 45.000 5.73 0.00 36.70 5.92
786 787 0.162933 TCAAACGAAATCACGCGCTC 59.837 50.000 5.73 0.00 36.70 5.03
787 788 1.114515 CAAACGAAATCACGCGCTCG 61.115 55.000 5.73 12.23 42.43 5.03
788 789 2.811893 AAACGAAATCACGCGCTCGC 62.812 55.000 5.73 3.90 39.84 5.03
789 790 3.837687 CGAAATCACGCGCTCGCA 61.838 61.111 5.73 0.00 42.06 5.10
790 791 2.020559 GAAATCACGCGCTCGCAG 59.979 61.111 5.73 9.38 42.06 5.18
791 792 4.152625 AAATCACGCGCTCGCAGC 62.153 61.111 5.73 0.00 42.06 5.25
801 802 3.764466 CTCGCAGCCCCTCTCGTT 61.764 66.667 0.00 0.00 0.00 3.85
802 803 3.997064 CTCGCAGCCCCTCTCGTTG 62.997 68.421 0.00 0.00 0.00 4.10
803 804 4.069232 CGCAGCCCCTCTCGTTGA 62.069 66.667 0.00 0.00 0.00 3.18
804 805 2.347490 GCAGCCCCTCTCGTTGAA 59.653 61.111 0.00 0.00 0.00 2.69
805 806 1.302511 GCAGCCCCTCTCGTTGAAA 60.303 57.895 0.00 0.00 0.00 2.69
806 807 0.889186 GCAGCCCCTCTCGTTGAAAA 60.889 55.000 0.00 0.00 0.00 2.29
807 808 1.826385 CAGCCCCTCTCGTTGAAAAT 58.174 50.000 0.00 0.00 0.00 1.82
808 809 2.162681 CAGCCCCTCTCGTTGAAAATT 58.837 47.619 0.00 0.00 0.00 1.82
809 810 2.162408 CAGCCCCTCTCGTTGAAAATTC 59.838 50.000 0.00 0.00 0.00 2.17
870 930 0.811616 CCTACATCGGCCTGCAGTTC 60.812 60.000 13.81 3.71 0.00 3.01
891 954 3.009033 TCCCCTGAACAAAGTATGGACTG 59.991 47.826 0.00 0.00 35.52 3.51
910 973 5.810074 GGACTGAAAAAGATGTCTAGCTCTC 59.190 44.000 0.00 0.00 0.00 3.20
929 992 3.699538 TCTCGCTGTAATCTCCAAGCTTA 59.300 43.478 0.00 0.00 0.00 3.09
1032 1123 1.622312 CAGCATAGCCTCCATGAGCTA 59.378 52.381 12.52 12.52 45.17 3.32
1035 1132 2.828520 GCATAGCCTCCATGAGCTACTA 59.171 50.000 12.42 0.91 43.97 1.82
1085 1185 1.123077 CATGCAGCCCTAGTGGTCTA 58.877 55.000 0.00 0.00 36.04 2.59
1221 1342 4.643387 GGCCACCTGCACCTCGTT 62.643 66.667 0.00 0.00 43.89 3.85
1297 1418 2.364186 TCATGCTCCTCCGCCTCA 60.364 61.111 0.00 0.00 0.00 3.86
1412 1533 2.263077 CGTCACCGAAATCCTCTTCTG 58.737 52.381 0.00 0.00 35.63 3.02
1620 1750 3.244044 ACATTTTGTCATTGTTTCGGGGG 60.244 43.478 0.00 0.00 0.00 5.40
1652 1782 7.775093 CCCCTATTGTCTAGAATCATTTTGTCA 59.225 37.037 0.00 0.00 0.00 3.58
1691 1821 6.815641 TGTATTTTTCTGCTTTTTCACTTGCA 59.184 30.769 0.00 0.00 0.00 4.08
1719 1849 1.887797 ATATTTGGGGGACTCGTGGA 58.112 50.000 0.00 0.00 0.00 4.02
1734 1864 2.002586 CGTGGAAATGTGTGCTCCTAG 58.997 52.381 0.00 0.00 0.00 3.02
1735 1865 2.612972 CGTGGAAATGTGTGCTCCTAGT 60.613 50.000 0.00 0.00 0.00 2.57
1736 1866 3.412386 GTGGAAATGTGTGCTCCTAGTT 58.588 45.455 0.00 0.00 0.00 2.24
1737 1867 3.821033 GTGGAAATGTGTGCTCCTAGTTT 59.179 43.478 0.00 0.00 0.00 2.66
1738 1868 4.278419 GTGGAAATGTGTGCTCCTAGTTTT 59.722 41.667 0.00 0.00 0.00 2.43
1739 1869 4.892934 TGGAAATGTGTGCTCCTAGTTTTT 59.107 37.500 0.00 0.00 0.00 1.94
1761 1891 1.904287 TTTGTGGGTATGTGTGCTCC 58.096 50.000 0.00 0.00 0.00 4.70
1762 1892 1.064003 TTGTGGGTATGTGTGCTCCT 58.936 50.000 0.00 0.00 0.00 3.69
1763 1893 1.945580 TGTGGGTATGTGTGCTCCTA 58.054 50.000 0.00 0.00 0.00 2.94
1764 1894 1.831106 TGTGGGTATGTGTGCTCCTAG 59.169 52.381 0.00 0.00 0.00 3.02
1777 1907 5.127356 GTGTGCTCCTAGTTATTGGTAGTCT 59.873 44.000 0.00 0.00 0.00 3.24
1778 1908 5.127194 TGTGCTCCTAGTTATTGGTAGTCTG 59.873 44.000 0.00 0.00 0.00 3.51
1779 1909 5.127356 GTGCTCCTAGTTATTGGTAGTCTGT 59.873 44.000 0.00 0.00 0.00 3.41
1780 1910 5.720041 TGCTCCTAGTTATTGGTAGTCTGTT 59.280 40.000 0.00 0.00 0.00 3.16
1781 1911 6.043411 GCTCCTAGTTATTGGTAGTCTGTTG 58.957 44.000 0.00 0.00 0.00 3.33
1782 1912 6.540438 TCCTAGTTATTGGTAGTCTGTTGG 57.460 41.667 0.00 0.00 0.00 3.77
1783 1913 6.021030 TCCTAGTTATTGGTAGTCTGTTGGT 58.979 40.000 0.00 0.00 0.00 3.67
1784 1914 6.499350 TCCTAGTTATTGGTAGTCTGTTGGTT 59.501 38.462 0.00 0.00 0.00 3.67
1785 1915 7.016858 TCCTAGTTATTGGTAGTCTGTTGGTTT 59.983 37.037 0.00 0.00 0.00 3.27
1786 1916 8.316214 CCTAGTTATTGGTAGTCTGTTGGTTTA 58.684 37.037 0.00 0.00 0.00 2.01
1787 1917 7.974482 AGTTATTGGTAGTCTGTTGGTTTAC 57.026 36.000 0.00 0.00 0.00 2.01
1788 1918 7.511268 AGTTATTGGTAGTCTGTTGGTTTACA 58.489 34.615 0.00 0.00 0.00 2.41
1789 1919 7.443272 AGTTATTGGTAGTCTGTTGGTTTACAC 59.557 37.037 0.00 0.00 0.00 2.90
1790 1920 3.719924 TGGTAGTCTGTTGGTTTACACG 58.280 45.455 0.00 0.00 0.00 4.49
1791 1921 3.384146 TGGTAGTCTGTTGGTTTACACGA 59.616 43.478 0.00 0.00 0.00 4.35
1792 1922 3.737774 GGTAGTCTGTTGGTTTACACGAC 59.262 47.826 0.00 0.00 31.83 4.34
1793 1923 2.830104 AGTCTGTTGGTTTACACGACC 58.170 47.619 0.00 0.00 37.69 4.79
1794 1924 2.168936 AGTCTGTTGGTTTACACGACCA 59.831 45.455 0.00 0.00 45.09 4.02
1800 1930 3.195471 TGGTTTACACGACCAATCACA 57.805 42.857 0.00 0.00 43.87 3.58
1801 1931 3.542648 TGGTTTACACGACCAATCACAA 58.457 40.909 0.00 0.00 43.87 3.33
1802 1932 3.312973 TGGTTTACACGACCAATCACAAC 59.687 43.478 0.00 0.00 43.87 3.32
1803 1933 3.312973 GGTTTACACGACCAATCACAACA 59.687 43.478 0.00 0.00 37.14 3.33
1804 1934 4.201930 GGTTTACACGACCAATCACAACAA 60.202 41.667 0.00 0.00 37.14 2.83
1805 1935 5.333513 GTTTACACGACCAATCACAACAAA 58.666 37.500 0.00 0.00 0.00 2.83
1806 1936 5.562506 TTACACGACCAATCACAACAAAA 57.437 34.783 0.00 0.00 0.00 2.44
1807 1937 4.442375 ACACGACCAATCACAACAAAAA 57.558 36.364 0.00 0.00 0.00 1.94
1808 1938 5.004922 ACACGACCAATCACAACAAAAAT 57.995 34.783 0.00 0.00 0.00 1.82
1809 1939 5.415221 ACACGACCAATCACAACAAAAATT 58.585 33.333 0.00 0.00 0.00 1.82
1810 1940 5.290643 ACACGACCAATCACAACAAAAATTG 59.709 36.000 0.00 0.00 35.59 2.32
1812 1942 5.518487 ACGACCAATCACAACAAAAATTGTC 59.482 36.000 0.00 0.00 44.59 3.18
1813 1943 5.748152 CGACCAATCACAACAAAAATTGTCT 59.252 36.000 0.00 0.00 44.59 3.41
1814 1944 6.074888 CGACCAATCACAACAAAAATTGTCTC 60.075 38.462 0.00 0.00 44.59 3.36
1815 1945 6.877236 ACCAATCACAACAAAAATTGTCTCT 58.123 32.000 0.00 0.00 44.59 3.10
1816 1946 8.006298 ACCAATCACAACAAAAATTGTCTCTA 57.994 30.769 0.00 0.00 44.59 2.43
1817 1947 8.641541 ACCAATCACAACAAAAATTGTCTCTAT 58.358 29.630 0.00 0.00 44.59 1.98
1818 1948 8.918658 CCAATCACAACAAAAATTGTCTCTATG 58.081 33.333 0.00 0.00 44.59 2.23
1819 1949 9.467258 CAATCACAACAAAAATTGTCTCTATGT 57.533 29.630 0.00 0.00 44.59 2.29
1849 1979 3.720002 TCTCCCCTAGAAAACTGTTTGGT 59.280 43.478 6.53 0.00 0.00 3.67
1860 1991 7.892609 AGAAAACTGTTTGGTGTAAGAAAACT 58.107 30.769 6.53 0.00 35.35 2.66
1863 1994 5.961272 ACTGTTTGGTGTAAGAAAACTTGG 58.039 37.500 0.00 0.00 35.35 3.61
1866 1997 7.093509 ACTGTTTGGTGTAAGAAAACTTGGAAT 60.094 33.333 0.00 0.00 35.35 3.01
1867 1998 7.262048 TGTTTGGTGTAAGAAAACTTGGAATC 58.738 34.615 0.00 0.00 35.35 2.52
1868 1999 7.123547 TGTTTGGTGTAAGAAAACTTGGAATCT 59.876 33.333 0.00 0.00 35.35 2.40
1870 2001 7.272037 TGGTGTAAGAAAACTTGGAATCTTC 57.728 36.000 0.00 0.00 34.24 2.87
1872 2003 8.215050 TGGTGTAAGAAAACTTGGAATCTTCTA 58.785 33.333 0.00 0.00 34.24 2.10
1873 2004 9.232473 GGTGTAAGAAAACTTGGAATCTTCTAT 57.768 33.333 0.00 0.00 34.24 1.98
1878 2009 8.800370 AGAAAACTTGGAATCTTCTATCTTCC 57.200 34.615 0.00 0.00 39.13 3.46
1879 2010 7.831690 AGAAAACTTGGAATCTTCTATCTTCCC 59.168 37.037 0.00 0.00 38.11 3.97
1881 2012 5.292815 ACTTGGAATCTTCTATCTTCCCCT 58.707 41.667 0.00 0.00 38.11 4.79
1882 2013 5.733647 ACTTGGAATCTTCTATCTTCCCCTT 59.266 40.000 0.00 0.00 38.11 3.95
1883 2014 5.896073 TGGAATCTTCTATCTTCCCCTTC 57.104 43.478 0.00 0.00 38.11 3.46
2003 2134 0.386858 GCGACGACTACAAGCACTGA 60.387 55.000 0.00 0.00 0.00 3.41
2011 2142 0.318441 TACAAGCACTGAAGCGAGCT 59.682 50.000 0.00 0.00 40.15 4.09
2052 2183 0.618680 CCCCTCCATCACCAGAGTCA 60.619 60.000 0.00 0.00 0.00 3.41
2055 2186 1.620798 CCTCCATCACCAGAGTCAGGA 60.621 57.143 8.83 0.00 0.00 3.86
2177 2308 4.177537 TGGAAAGATCAAACCTGGAACA 57.822 40.909 0.00 0.00 0.00 3.18
2354 2531 2.043752 TACGGAGGGACATCGCCA 60.044 61.111 0.00 0.00 0.00 5.69
2382 2559 1.106944 CAGCCCCAACCAAGACGTTT 61.107 55.000 0.00 0.00 0.00 3.60
2383 2560 0.396556 AGCCCCAACCAAGACGTTTT 60.397 50.000 0.00 0.00 0.00 2.43
2548 2725 3.017442 GGAAAGGGTCCTGAATACTTGC 58.983 50.000 0.00 0.00 43.98 4.01
2549 2726 3.561313 GGAAAGGGTCCTGAATACTTGCA 60.561 47.826 0.00 0.00 43.98 4.08
2550 2727 3.806949 AAGGGTCCTGAATACTTGCAA 57.193 42.857 0.00 0.00 0.00 4.08
2551 2728 3.073274 AGGGTCCTGAATACTTGCAAC 57.927 47.619 0.00 0.00 0.00 4.17
2552 2729 2.092323 GGGTCCTGAATACTTGCAACC 58.908 52.381 0.00 0.00 0.00 3.77
2553 2730 1.737793 GGTCCTGAATACTTGCAACCG 59.262 52.381 0.00 0.00 0.00 4.44
2554 2731 2.614481 GGTCCTGAATACTTGCAACCGA 60.614 50.000 0.00 0.00 0.00 4.69
2555 2732 2.673368 GTCCTGAATACTTGCAACCGAG 59.327 50.000 0.00 0.00 0.00 4.63
2556 2733 2.301870 TCCTGAATACTTGCAACCGAGT 59.698 45.455 0.00 0.00 39.12 4.18
2557 2734 2.416547 CCTGAATACTTGCAACCGAGTG 59.583 50.000 0.00 0.00 36.37 3.51
2558 2735 3.325870 CTGAATACTTGCAACCGAGTGA 58.674 45.455 0.00 0.00 36.37 3.41
2559 2736 3.325870 TGAATACTTGCAACCGAGTGAG 58.674 45.455 0.00 0.00 36.37 3.51
2560 2737 2.386661 ATACTTGCAACCGAGTGAGG 57.613 50.000 0.00 0.00 36.37 3.86
2561 2738 0.320374 TACTTGCAACCGAGTGAGGG 59.680 55.000 0.00 0.00 36.37 4.30
2562 2739 1.071471 CTTGCAACCGAGTGAGGGT 59.929 57.895 0.00 0.00 40.20 4.34
2563 2740 0.320374 CTTGCAACCGAGTGAGGGTA 59.680 55.000 0.00 0.00 36.57 3.69
2564 2741 0.320374 TTGCAACCGAGTGAGGGTAG 59.680 55.000 0.00 0.00 36.57 3.18
2565 2742 1.448013 GCAACCGAGTGAGGGTAGC 60.448 63.158 0.00 0.00 36.57 3.58
2566 2743 1.153823 CAACCGAGTGAGGGTAGCG 60.154 63.158 0.00 0.00 36.57 4.26
2567 2744 2.348888 AACCGAGTGAGGGTAGCGG 61.349 63.158 0.00 0.00 46.83 5.52
2568 2745 2.754658 CCGAGTGAGGGTAGCGGT 60.755 66.667 0.00 0.00 37.35 5.68
2569 2746 2.772691 CCGAGTGAGGGTAGCGGTC 61.773 68.421 0.00 0.00 37.35 4.79
2570 2747 1.749638 CGAGTGAGGGTAGCGGTCT 60.750 63.158 0.00 0.00 0.00 3.85
2571 2748 1.716826 CGAGTGAGGGTAGCGGTCTC 61.717 65.000 0.00 0.00 0.00 3.36
2572 2749 0.394625 GAGTGAGGGTAGCGGTCTCT 60.395 60.000 0.00 0.00 0.00 3.10
2573 2750 0.917533 AGTGAGGGTAGCGGTCTCTA 59.082 55.000 0.00 0.00 0.00 2.43
2574 2751 1.495574 AGTGAGGGTAGCGGTCTCTAT 59.504 52.381 0.00 0.00 0.00 1.98
2575 2752 1.881324 GTGAGGGTAGCGGTCTCTATC 59.119 57.143 0.00 0.00 0.00 2.08
2576 2753 1.775459 TGAGGGTAGCGGTCTCTATCT 59.225 52.381 0.00 0.00 0.00 1.98
2577 2754 2.175069 TGAGGGTAGCGGTCTCTATCTT 59.825 50.000 0.00 0.00 0.00 2.40
2578 2755 2.815503 GAGGGTAGCGGTCTCTATCTTC 59.184 54.545 0.00 0.00 0.00 2.87
2579 2756 1.887854 GGGTAGCGGTCTCTATCTTCC 59.112 57.143 0.00 0.00 0.00 3.46
2580 2757 1.887854 GGTAGCGGTCTCTATCTTCCC 59.112 57.143 0.00 0.00 0.00 3.97
2581 2758 1.887854 GTAGCGGTCTCTATCTTCCCC 59.112 57.143 0.00 0.00 0.00 4.81
2582 2759 0.558712 AGCGGTCTCTATCTTCCCCT 59.441 55.000 0.00 0.00 0.00 4.79
2583 2760 0.963225 GCGGTCTCTATCTTCCCCTC 59.037 60.000 0.00 0.00 0.00 4.30
2584 2761 1.623163 CGGTCTCTATCTTCCCCTCC 58.377 60.000 0.00 0.00 0.00 4.30
2585 2762 1.133450 CGGTCTCTATCTTCCCCTCCA 60.133 57.143 0.00 0.00 0.00 3.86
2618 2795 9.915629 AGATTATTCTTTCATCCGTATAGTGTC 57.084 33.333 0.00 0.00 0.00 3.67
2625 2802 6.525578 TTCATCCGTATAGTGTCTTTGTCT 57.474 37.500 0.00 0.00 0.00 3.41
2626 2803 7.634671 TTCATCCGTATAGTGTCTTTGTCTA 57.365 36.000 0.00 0.00 0.00 2.59
2697 2875 2.358195 CCTAAGGTTTAGGCAGCCCATT 60.358 50.000 8.22 0.00 0.00 3.16
2713 2891 4.082571 AGCCCATTTTCTTCATTTCAGTCG 60.083 41.667 0.00 0.00 0.00 4.18
2720 2898 4.351874 TCTTCATTTCAGTCGGTTCCTT 57.648 40.909 0.00 0.00 0.00 3.36
2721 2899 4.065088 TCTTCATTTCAGTCGGTTCCTTG 58.935 43.478 0.00 0.00 0.00 3.61
2741 2920 5.009410 CCTTGTCCATTGGATTATCTTGAGC 59.991 44.000 9.01 0.00 32.73 4.26
2782 2961 2.204463 TGGGCTCCATCCTGTGATTAA 58.796 47.619 0.00 0.00 0.00 1.40
2931 3111 4.024302 GGAAGTTGCGCTACTTTACACTTT 60.024 41.667 32.12 12.72 38.43 2.66
3015 3195 8.428063 TGAATTTTAGCATTTTTCTTCTCCCAA 58.572 29.630 0.00 0.00 0.00 4.12
3021 3201 7.544804 AGCATTTTTCTTCTCCCAAAGTATT 57.455 32.000 0.00 0.00 0.00 1.89
3022 3202 8.650143 AGCATTTTTCTTCTCCCAAAGTATTA 57.350 30.769 0.00 0.00 0.00 0.98
3145 3325 9.368674 GTTTTTGTTGCTTTACCTTTTTAGGTA 57.631 29.630 0.00 0.00 42.99 3.08
3169 3349 3.318886 TGTGTTGCATTTCATGTCATGC 58.681 40.909 19.11 19.11 45.20 4.06
3185 3365 4.341806 TGTCATGCTGTCCATTGTTTTCTT 59.658 37.500 0.00 0.00 29.71 2.52
3317 3498 9.578439 AAAAGCAATAGTTCTTAGATGCAAATC 57.422 29.630 7.39 0.00 36.30 2.17
3335 3520 9.664332 ATGCAAATCTATCCTAATGCTAGTAAG 57.336 33.333 0.00 0.00 34.97 2.34
3373 3615 2.618241 CCATGCATGGCTACACGTTATT 59.382 45.455 31.95 0.00 41.75 1.40
3413 3659 9.912634 ATACTAAAATTTTCACAGGTGATGTTG 57.087 29.630 6.72 0.00 41.41 3.33
3431 3677 6.900285 ATGTTGGTCATGGCCAAGATTGGA 62.900 45.833 30.46 8.20 46.30 3.53
3470 3716 1.546476 ACCTCCATCGACTTGAGTGAC 59.454 52.381 0.00 0.00 0.00 3.67
3473 3719 2.232452 CTCCATCGACTTGAGTGACCTT 59.768 50.000 0.00 0.00 0.00 3.50
3476 3722 3.306364 CCATCGACTTGAGTGACCTTCTT 60.306 47.826 0.00 0.00 0.00 2.52
3488 3734 2.703536 TGACCTTCTTAGTGCCTTCACA 59.296 45.455 0.00 0.00 45.49 3.58
3489 3735 3.327757 TGACCTTCTTAGTGCCTTCACAT 59.672 43.478 0.00 0.00 45.49 3.21
3556 3802 3.695830 AGGCCACGATAAACTCTTTCA 57.304 42.857 5.01 0.00 0.00 2.69
3557 3803 4.222124 AGGCCACGATAAACTCTTTCAT 57.778 40.909 5.01 0.00 0.00 2.57
3725 3971 0.942252 TCATCGATGAGCATGCAAGC 59.058 50.000 23.99 5.62 32.11 4.01
3739 3985 1.664649 CAAGCAAGCCGACGTCAGA 60.665 57.895 17.16 0.00 0.00 3.27
3756 4002 2.890945 TCAGAACATGACAACGAGGAGA 59.109 45.455 0.00 0.00 31.12 3.71
3768 4014 3.428746 ACGAGGAGAATGACTTCATCG 57.571 47.619 6.95 6.95 38.74 3.84
3850 4096 2.080693 GGCGGTATGATGTCACAAACA 58.919 47.619 0.00 0.00 43.51 2.83
3866 4112 3.005684 ACAAACATTGCCTACACATGTGG 59.994 43.478 28.64 13.29 31.93 4.17
3870 4116 1.533625 TTGCCTACACATGTGGAAGC 58.466 50.000 28.64 25.57 34.19 3.86
3882 4128 6.484643 ACACATGTGGAAGCTTATATGACATC 59.515 38.462 28.64 0.00 34.19 3.06
4013 4259 3.808726 CCTCATGCAGAAGCTACAAGATC 59.191 47.826 0.00 0.00 42.74 2.75
4060 4306 5.417894 GGGAAAAGAAATGGTTACCGAAGAT 59.582 40.000 0.00 0.00 0.00 2.40
4069 4315 7.730364 AATGGTTACCGAAGATGATATCAAC 57.270 36.000 9.99 7.23 0.00 3.18
4117 4363 0.318762 AAGAGACACTTCGGCTCCAC 59.681 55.000 0.00 0.00 32.91 4.02
4142 4388 4.335647 CACCGCTCCTTGTGCCCT 62.336 66.667 0.00 0.00 0.00 5.19
4157 4403 1.749334 GCCCTACCTCTCCATGGTCG 61.749 65.000 12.58 4.49 38.88 4.79
4177 4423 3.682858 TCGACTGCAACATAAAAGGCTAC 59.317 43.478 0.00 0.00 0.00 3.58
4186 4432 6.318900 GCAACATAAAAGGCTACAAGATACCT 59.681 38.462 0.00 0.00 0.00 3.08
4271 4517 3.181446 TGGTGACACATCAATCTGTTGGA 60.181 43.478 8.08 0.00 36.31 3.53
4332 4578 6.432162 ACACATATGCTGACAGAAGACAAAAT 59.568 34.615 6.65 0.00 0.00 1.82
4738 5029 5.066893 TGGCTATTGCTCTGATTCAAATGTC 59.933 40.000 0.00 0.00 39.59 3.06
4847 5191 2.545106 GACAAAGCAAAGTTTGGCCATG 59.455 45.455 17.11 1.60 39.24 3.66
5234 5600 2.949177 TGCCCAGAACACACATAACT 57.051 45.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.956902 ACCGCCGAAACCATGGTAAC 60.957 55.000 20.12 14.07 0.00 2.50
5 6 1.376166 CACCGCCGAAACCATGGTA 60.376 57.895 20.12 0.00 0.00 3.25
6 7 2.478335 ATCACCGCCGAAACCATGGT 62.478 55.000 13.00 13.00 0.00 3.55
7 8 1.748879 ATCACCGCCGAAACCATGG 60.749 57.895 11.19 11.19 0.00 3.66
8 9 1.429021 CATCACCGCCGAAACCATG 59.571 57.895 0.00 0.00 0.00 3.66
9 10 1.748879 CCATCACCGCCGAAACCAT 60.749 57.895 0.00 0.00 0.00 3.55
10 11 2.359354 CCATCACCGCCGAAACCA 60.359 61.111 0.00 0.00 0.00 3.67
11 12 3.810896 GCCATCACCGCCGAAACC 61.811 66.667 0.00 0.00 0.00 3.27
12 13 2.746277 AGCCATCACCGCCGAAAC 60.746 61.111 0.00 0.00 0.00 2.78
13 14 2.435938 GAGCCATCACCGCCGAAA 60.436 61.111 0.00 0.00 0.00 3.46
14 15 4.467084 GGAGCCATCACCGCCGAA 62.467 66.667 0.00 0.00 0.00 4.30
17 18 3.161450 TAGGGAGCCATCACCGCC 61.161 66.667 0.00 0.00 0.00 6.13
18 19 2.370647 GACTAGGGAGCCATCACCGC 62.371 65.000 0.00 0.00 0.00 5.68
19 20 0.757188 AGACTAGGGAGCCATCACCG 60.757 60.000 0.00 0.00 0.00 4.94
20 21 2.158445 TCTAGACTAGGGAGCCATCACC 60.158 54.545 9.64 0.00 0.00 4.02
35 36 3.494048 CCACCATGCTTCCTGATCTAGAC 60.494 52.174 0.00 0.00 0.00 2.59
79 80 1.110442 CCAAAGTTGCTGACCCAACA 58.890 50.000 7.65 0.00 45.73 3.33
88 89 3.157087 CATCCACCTAACCAAAGTTGCT 58.843 45.455 0.00 0.00 36.68 3.91
98 99 4.935808 CCTTACAAGTGACATCCACCTAAC 59.064 45.833 0.00 0.00 46.87 2.34
102 103 2.039879 ACCCTTACAAGTGACATCCACC 59.960 50.000 0.00 0.00 46.87 4.61
107 108 2.233922 CTCGGACCCTTACAAGTGACAT 59.766 50.000 0.00 0.00 0.00 3.06
171 172 3.963733 TCCATGAGGGAAGCAACAG 57.036 52.632 0.00 0.00 44.80 3.16
191 192 6.773638 ACCATGAGGAGACCAATAATATCAC 58.226 40.000 0.00 0.00 38.69 3.06
192 193 7.038302 GGTACCATGAGGAGACCAATAATATCA 60.038 40.741 7.15 0.00 41.33 2.15
193 194 7.038302 TGGTACCATGAGGAGACCAATAATATC 60.038 40.741 11.60 0.00 45.29 1.63
212 213 2.203877 AACGGAGCCCTGGTACCA 60.204 61.111 15.39 15.39 0.00 3.25
238 239 0.107116 GCCTGAGAGACCGGACTAGA 60.107 60.000 9.46 0.00 0.00 2.43
288 289 2.202492 CGACGACGCCCTCAAGAG 60.202 66.667 0.00 0.00 0.00 2.85
341 342 1.573108 TGGAGCAAACCCAAAAACCA 58.427 45.000 0.00 0.00 0.00 3.67
344 345 3.244387 GCCTATTGGAGCAAACCCAAAAA 60.244 43.478 0.00 0.00 45.67 1.94
348 349 0.679640 CGCCTATTGGAGCAAACCCA 60.680 55.000 0.00 0.00 34.57 4.51
349 350 2.106844 CGCCTATTGGAGCAAACCC 58.893 57.895 0.00 0.00 34.57 4.11
358 359 2.038269 ACAACCACGCGCCTATTGG 61.038 57.895 5.73 8.88 36.39 3.16
359 360 1.134487 CACAACCACGCGCCTATTG 59.866 57.895 5.73 8.78 0.00 1.90
360 361 2.686816 GCACAACCACGCGCCTATT 61.687 57.895 5.73 0.00 0.00 1.73
361 362 3.124921 GCACAACCACGCGCCTAT 61.125 61.111 5.73 0.00 0.00 2.57
378 379 3.781341 TTAGAATATTTTAGCGCGCCG 57.219 42.857 30.33 0.00 0.00 6.46
379 380 5.030874 ACATTAGAATATTTTAGCGCGCC 57.969 39.130 30.33 10.31 0.00 6.53
380 381 6.363473 AGAACATTAGAATATTTTAGCGCGC 58.637 36.000 26.66 26.66 0.00 6.86
381 382 7.788055 AGAGAACATTAGAATATTTTAGCGCG 58.212 34.615 0.00 0.00 0.00 6.86
422 423 9.528489 TTTGCCTTATTACTAGGTTTCTTCATT 57.472 29.630 0.00 0.00 35.13 2.57
451 452 8.220559 ACAACATGCTAGGGATAACATTAGAAT 58.779 33.333 0.00 0.00 0.00 2.40
523 524 4.141135 AGGCCATGAAGACTAGTCTAGCTA 60.141 45.833 25.42 12.32 39.39 3.32
524 525 2.962421 GGCCATGAAGACTAGTCTAGCT 59.038 50.000 25.42 10.59 39.39 3.32
525 526 2.962421 AGGCCATGAAGACTAGTCTAGC 59.038 50.000 25.42 20.31 39.39 3.42
526 527 3.243704 GCAGGCCATGAAGACTAGTCTAG 60.244 52.174 25.42 14.89 39.39 2.43
570 571 3.062466 GGAACCGGGGCTTTGAGC 61.062 66.667 6.32 0.00 41.46 4.26
571 572 0.611896 ATTGGAACCGGGGCTTTGAG 60.612 55.000 6.32 0.00 0.00 3.02
572 573 0.178947 AATTGGAACCGGGGCTTTGA 60.179 50.000 6.32 0.00 0.00 2.69
573 574 0.037419 CAATTGGAACCGGGGCTTTG 60.037 55.000 6.32 0.00 0.00 2.77
574 575 1.191489 CCAATTGGAACCGGGGCTTT 61.191 55.000 20.50 0.00 37.39 3.51
575 576 1.609210 CCAATTGGAACCGGGGCTT 60.609 57.895 20.50 0.00 37.39 4.35
576 577 2.037208 CCAATTGGAACCGGGGCT 59.963 61.111 20.50 0.00 37.39 5.19
577 578 2.036572 TCCAATTGGAACCGGGGC 59.963 61.111 25.13 0.00 42.18 5.80
591 592 4.517453 CGTCTGGTTTCTTTTGGTAATCCA 59.483 41.667 0.00 0.00 42.66 3.41
592 593 4.758165 TCGTCTGGTTTCTTTTGGTAATCC 59.242 41.667 0.00 0.00 0.00 3.01
593 594 5.106673 CCTCGTCTGGTTTCTTTTGGTAATC 60.107 44.000 0.00 0.00 0.00 1.75
594 595 4.760204 CCTCGTCTGGTTTCTTTTGGTAAT 59.240 41.667 0.00 0.00 0.00 1.89
595 596 4.131596 CCTCGTCTGGTTTCTTTTGGTAA 58.868 43.478 0.00 0.00 0.00 2.85
596 597 3.135167 ACCTCGTCTGGTTTCTTTTGGTA 59.865 43.478 0.00 0.00 36.89 3.25
597 598 2.092592 ACCTCGTCTGGTTTCTTTTGGT 60.093 45.455 0.00 0.00 36.89 3.67
598 599 2.548480 GACCTCGTCTGGTTTCTTTTGG 59.452 50.000 0.00 0.00 41.00 3.28
599 600 2.548480 GGACCTCGTCTGGTTTCTTTTG 59.452 50.000 0.00 0.00 41.00 2.44
600 601 2.171870 TGGACCTCGTCTGGTTTCTTTT 59.828 45.455 0.00 0.00 41.00 2.27
601 602 1.766496 TGGACCTCGTCTGGTTTCTTT 59.234 47.619 0.00 0.00 41.00 2.52
602 603 1.420430 TGGACCTCGTCTGGTTTCTT 58.580 50.000 0.00 0.00 41.00 2.52
603 604 1.420430 TTGGACCTCGTCTGGTTTCT 58.580 50.000 0.00 0.00 41.00 2.52
604 605 2.347731 GATTGGACCTCGTCTGGTTTC 58.652 52.381 0.00 0.00 41.00 2.78
605 606 1.003233 GGATTGGACCTCGTCTGGTTT 59.997 52.381 0.00 0.00 41.00 3.27
606 607 0.613777 GGATTGGACCTCGTCTGGTT 59.386 55.000 0.00 0.00 41.00 3.67
607 608 1.605058 CGGATTGGACCTCGTCTGGT 61.605 60.000 0.00 0.00 44.10 4.00
608 609 1.141881 CGGATTGGACCTCGTCTGG 59.858 63.158 0.00 0.00 32.47 3.86
609 610 0.246635 AACGGATTGGACCTCGTCTG 59.753 55.000 0.00 0.00 34.60 3.51
610 611 1.475682 GTAACGGATTGGACCTCGTCT 59.524 52.381 0.00 0.00 34.60 4.18
611 612 1.203052 TGTAACGGATTGGACCTCGTC 59.797 52.381 0.00 0.00 34.60 4.20
612 613 1.259609 TGTAACGGATTGGACCTCGT 58.740 50.000 0.00 0.00 37.45 4.18
613 614 2.268298 CTTGTAACGGATTGGACCTCG 58.732 52.381 0.00 0.00 0.00 4.63
614 615 3.329929 ACTTGTAACGGATTGGACCTC 57.670 47.619 0.00 0.00 0.00 3.85
615 616 3.367703 CGTACTTGTAACGGATTGGACCT 60.368 47.826 0.00 0.00 36.71 3.85
616 617 2.925563 CGTACTTGTAACGGATTGGACC 59.074 50.000 0.00 0.00 36.71 4.46
617 618 2.346545 GCGTACTTGTAACGGATTGGAC 59.653 50.000 0.00 0.00 40.64 4.02
618 619 2.609350 GCGTACTTGTAACGGATTGGA 58.391 47.619 0.00 0.00 40.64 3.53
619 620 1.322338 CGCGTACTTGTAACGGATTGG 59.678 52.381 0.00 0.00 40.64 3.16
620 621 1.322338 CCGCGTACTTGTAACGGATTG 59.678 52.381 4.92 0.00 46.71 2.67
621 622 1.632422 CCGCGTACTTGTAACGGATT 58.368 50.000 4.92 0.00 46.71 3.01
622 623 0.179129 CCCGCGTACTTGTAACGGAT 60.179 55.000 18.90 0.00 46.71 4.18
623 624 1.212490 CCCGCGTACTTGTAACGGA 59.788 57.895 18.90 0.00 46.71 4.69
624 625 1.806758 CCCCGCGTACTTGTAACGG 60.807 63.158 4.92 13.36 43.44 4.44
625 626 1.806758 CCCCCGCGTACTTGTAACG 60.807 63.158 4.92 0.00 43.12 3.18
626 627 4.190350 CCCCCGCGTACTTGTAAC 57.810 61.111 4.92 0.00 0.00 2.50
640 641 1.308998 CGTGTGCTGATTATTCCCCC 58.691 55.000 0.00 0.00 0.00 5.40
641 642 0.663153 GCGTGTGCTGATTATTCCCC 59.337 55.000 0.00 0.00 38.39 4.81
642 643 1.064060 GTGCGTGTGCTGATTATTCCC 59.936 52.381 0.00 0.00 43.34 3.97
643 644 2.009774 AGTGCGTGTGCTGATTATTCC 58.990 47.619 0.00 0.00 43.34 3.01
644 645 2.789092 GCAGTGCGTGTGCTGATTATTC 60.789 50.000 0.00 0.00 43.34 1.75
645 646 1.131126 GCAGTGCGTGTGCTGATTATT 59.869 47.619 0.00 0.00 43.34 1.40
646 647 0.729116 GCAGTGCGTGTGCTGATTAT 59.271 50.000 0.00 0.00 43.34 1.28
647 648 1.298157 GGCAGTGCGTGTGCTGATTA 61.298 55.000 9.45 0.00 43.34 1.75
648 649 2.620112 GGCAGTGCGTGTGCTGATT 61.620 57.895 9.45 0.00 43.34 2.57
649 650 3.052082 GGCAGTGCGTGTGCTGAT 61.052 61.111 9.45 0.00 43.34 2.90
664 665 1.217244 CTGCTCATTTTGCTGGGGC 59.783 57.895 0.00 0.00 39.26 5.80
665 666 0.529378 GTCTGCTCATTTTGCTGGGG 59.471 55.000 0.00 0.00 0.00 4.96
666 667 0.529378 GGTCTGCTCATTTTGCTGGG 59.471 55.000 0.00 0.00 0.00 4.45
667 668 0.169672 CGGTCTGCTCATTTTGCTGG 59.830 55.000 0.00 0.00 0.00 4.85
668 669 0.877071 ACGGTCTGCTCATTTTGCTG 59.123 50.000 0.00 0.00 0.00 4.41
669 670 0.877071 CACGGTCTGCTCATTTTGCT 59.123 50.000 0.00 0.00 0.00 3.91
670 671 0.730494 GCACGGTCTGCTCATTTTGC 60.730 55.000 0.00 0.00 43.33 3.68
671 672 0.109597 GGCACGGTCTGCTCATTTTG 60.110 55.000 0.00 0.00 46.25 2.44
672 673 2.257353 GGCACGGTCTGCTCATTTT 58.743 52.632 0.00 0.00 46.25 1.82
673 674 3.987404 GGCACGGTCTGCTCATTT 58.013 55.556 0.00 0.00 46.25 2.32
678 679 4.320456 CTGTGGGCACGGTCTGCT 62.320 66.667 0.00 0.00 46.25 4.24
680 681 4.704833 CCCTGTGGGCACGGTCTG 62.705 72.222 0.00 0.00 35.35 3.51
690 691 2.281761 GTGACTGTGGCCCTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
691 692 2.281761 GGTGACTGTGGCCCTGTG 60.282 66.667 0.00 0.00 0.00 3.66
692 693 1.719063 ATTGGTGACTGTGGCCCTGT 61.719 55.000 0.00 1.36 0.00 4.00
693 694 0.540365 AATTGGTGACTGTGGCCCTG 60.540 55.000 0.00 0.00 0.00 4.45
694 695 0.188342 AAATTGGTGACTGTGGCCCT 59.812 50.000 0.00 0.00 0.00 5.19
695 696 1.818674 CTAAATTGGTGACTGTGGCCC 59.181 52.381 0.00 0.00 0.00 5.80
696 697 1.818674 CCTAAATTGGTGACTGTGGCC 59.181 52.381 0.00 0.00 0.00 5.36
697 698 2.749621 CTCCTAAATTGGTGACTGTGGC 59.250 50.000 0.00 0.00 0.00 5.01
698 699 4.286297 TCTCCTAAATTGGTGACTGTGG 57.714 45.455 0.00 0.00 0.00 4.17
699 700 6.824305 ATTTCTCCTAAATTGGTGACTGTG 57.176 37.500 0.00 0.00 30.44 3.66
714 715 8.934023 TGGAACTTTGTTGTTATATTTCTCCT 57.066 30.769 0.00 0.00 0.00 3.69
715 716 9.974980 TTTGGAACTTTGTTGTTATATTTCTCC 57.025 29.630 0.00 0.00 0.00 3.71
737 738 0.390124 TTTGCTGCAGCTCCTTTTGG 59.610 50.000 36.61 0.00 42.66 3.28
738 739 1.202440 TGTTTGCTGCAGCTCCTTTTG 60.202 47.619 36.61 0.00 42.66 2.44
739 740 1.113788 TGTTTGCTGCAGCTCCTTTT 58.886 45.000 36.61 0.00 42.66 2.27
740 741 1.335145 ATGTTTGCTGCAGCTCCTTT 58.665 45.000 36.61 17.69 42.66 3.11
741 742 2.205022 TATGTTTGCTGCAGCTCCTT 57.795 45.000 36.61 22.88 42.66 3.36
742 743 2.431954 ATATGTTTGCTGCAGCTCCT 57.568 45.000 36.61 21.39 42.66 3.69
743 744 2.551459 CCTATATGTTTGCTGCAGCTCC 59.449 50.000 36.61 24.14 42.66 4.70
744 745 2.551459 CCCTATATGTTTGCTGCAGCTC 59.449 50.000 36.61 25.83 42.66 4.09
745 746 2.173356 TCCCTATATGTTTGCTGCAGCT 59.827 45.455 36.61 20.43 42.66 4.24
746 747 2.575532 TCCCTATATGTTTGCTGCAGC 58.424 47.619 31.89 31.89 42.50 5.25
747 748 4.392047 TGATCCCTATATGTTTGCTGCAG 58.608 43.478 10.11 10.11 0.00 4.41
748 749 4.436113 TGATCCCTATATGTTTGCTGCA 57.564 40.909 0.00 0.00 0.00 4.41
749 750 5.523369 GTTTGATCCCTATATGTTTGCTGC 58.477 41.667 0.00 0.00 0.00 5.25
750 751 5.527214 TCGTTTGATCCCTATATGTTTGCTG 59.473 40.000 0.00 0.00 0.00 4.41
751 752 5.680619 TCGTTTGATCCCTATATGTTTGCT 58.319 37.500 0.00 0.00 0.00 3.91
752 753 6.371809 TTCGTTTGATCCCTATATGTTTGC 57.628 37.500 0.00 0.00 0.00 3.68
753 754 8.620416 TGATTTCGTTTGATCCCTATATGTTTG 58.380 33.333 0.00 0.00 0.00 2.93
754 755 8.621286 GTGATTTCGTTTGATCCCTATATGTTT 58.379 33.333 0.00 0.00 0.00 2.83
755 756 7.042051 CGTGATTTCGTTTGATCCCTATATGTT 60.042 37.037 0.00 0.00 0.00 2.71
756 757 6.423905 CGTGATTTCGTTTGATCCCTATATGT 59.576 38.462 0.00 0.00 0.00 2.29
757 758 6.618592 GCGTGATTTCGTTTGATCCCTATATG 60.619 42.308 0.00 0.00 0.00 1.78
758 759 5.408604 GCGTGATTTCGTTTGATCCCTATAT 59.591 40.000 0.00 0.00 0.00 0.86
759 760 4.748102 GCGTGATTTCGTTTGATCCCTATA 59.252 41.667 0.00 0.00 0.00 1.31
760 761 3.560068 GCGTGATTTCGTTTGATCCCTAT 59.440 43.478 0.00 0.00 0.00 2.57
761 762 2.933906 GCGTGATTTCGTTTGATCCCTA 59.066 45.455 0.00 0.00 0.00 3.53
762 763 1.737793 GCGTGATTTCGTTTGATCCCT 59.262 47.619 0.00 0.00 0.00 4.20
763 764 1.529010 CGCGTGATTTCGTTTGATCCC 60.529 52.381 0.00 0.00 0.00 3.85
764 765 1.797964 CGCGTGATTTCGTTTGATCC 58.202 50.000 0.00 0.00 0.00 3.36
765 766 1.171876 GCGCGTGATTTCGTTTGATC 58.828 50.000 8.43 0.00 0.00 2.92
766 767 0.796312 AGCGCGTGATTTCGTTTGAT 59.204 45.000 8.43 0.00 0.00 2.57
767 768 0.162933 GAGCGCGTGATTTCGTTTGA 59.837 50.000 8.43 0.00 0.00 2.69
768 769 1.114515 CGAGCGCGTGATTTCGTTTG 61.115 55.000 8.43 0.00 0.00 2.93
769 770 1.129809 CGAGCGCGTGATTTCGTTT 59.870 52.632 8.43 0.00 0.00 3.60
770 771 2.769617 CGAGCGCGTGATTTCGTT 59.230 55.556 8.43 0.00 0.00 3.85
771 772 3.838795 GCGAGCGCGTGATTTCGT 61.839 61.111 12.44 0.00 40.36 3.85
772 773 3.741063 CTGCGAGCGCGTGATTTCG 62.741 63.158 12.44 9.80 45.51 3.46
773 774 2.020559 CTGCGAGCGCGTGATTTC 59.979 61.111 12.44 0.00 45.51 2.17
774 775 4.152625 GCTGCGAGCGCGTGATTT 62.153 61.111 12.44 0.00 45.51 2.17
784 785 3.764466 AACGAGAGGGGCTGCGAG 61.764 66.667 0.00 0.00 0.00 5.03
785 786 4.069232 CAACGAGAGGGGCTGCGA 62.069 66.667 0.00 0.00 0.00 5.10
786 787 3.589654 TTCAACGAGAGGGGCTGCG 62.590 63.158 0.00 0.00 0.00 5.18
787 788 0.889186 TTTTCAACGAGAGGGGCTGC 60.889 55.000 0.00 0.00 0.00 5.25
788 789 1.826385 ATTTTCAACGAGAGGGGCTG 58.174 50.000 0.00 0.00 0.00 4.85
789 790 2.040412 AGAATTTTCAACGAGAGGGGCT 59.960 45.455 0.00 0.00 0.00 5.19
790 791 2.437413 AGAATTTTCAACGAGAGGGGC 58.563 47.619 0.00 0.00 0.00 5.80
791 792 3.191371 CCAAGAATTTTCAACGAGAGGGG 59.809 47.826 0.00 0.00 0.00 4.79
792 793 3.821033 ACCAAGAATTTTCAACGAGAGGG 59.179 43.478 0.00 0.00 0.00 4.30
793 794 4.083271 GGACCAAGAATTTTCAACGAGAGG 60.083 45.833 0.00 0.00 0.00 3.69
794 795 4.083271 GGGACCAAGAATTTTCAACGAGAG 60.083 45.833 0.00 0.00 0.00 3.20
795 796 3.818773 GGGACCAAGAATTTTCAACGAGA 59.181 43.478 0.00 0.00 0.00 4.04
796 797 3.364964 CGGGACCAAGAATTTTCAACGAG 60.365 47.826 0.00 0.00 0.00 4.18
797 798 2.550606 CGGGACCAAGAATTTTCAACGA 59.449 45.455 0.00 0.00 0.00 3.85
798 799 2.292292 ACGGGACCAAGAATTTTCAACG 59.708 45.455 0.00 0.00 0.00 4.10
799 800 4.758165 TCTACGGGACCAAGAATTTTCAAC 59.242 41.667 0.00 0.00 0.00 3.18
800 801 4.975631 TCTACGGGACCAAGAATTTTCAA 58.024 39.130 0.00 0.00 0.00 2.69
801 802 4.627284 TCTACGGGACCAAGAATTTTCA 57.373 40.909 0.00 0.00 0.00 2.69
802 803 5.952526 TTTCTACGGGACCAAGAATTTTC 57.047 39.130 0.00 0.00 0.00 2.29
803 804 6.911250 ATTTTCTACGGGACCAAGAATTTT 57.089 33.333 0.00 0.00 0.00 1.82
804 805 6.349033 CGAATTTTCTACGGGACCAAGAATTT 60.349 38.462 0.00 0.00 0.00 1.82
805 806 5.123344 CGAATTTTCTACGGGACCAAGAATT 59.877 40.000 0.00 0.00 0.00 2.17
806 807 4.634443 CGAATTTTCTACGGGACCAAGAAT 59.366 41.667 0.00 0.00 0.00 2.40
807 808 3.998341 CGAATTTTCTACGGGACCAAGAA 59.002 43.478 0.00 0.00 0.00 2.52
808 809 3.007182 ACGAATTTTCTACGGGACCAAGA 59.993 43.478 0.00 0.00 0.00 3.02
809 810 3.332034 ACGAATTTTCTACGGGACCAAG 58.668 45.455 0.00 0.00 0.00 3.61
870 930 3.009033 TCAGTCCATACTTTGTTCAGGGG 59.991 47.826 0.00 0.00 31.97 4.79
882 944 7.044798 AGCTAGACATCTTTTTCAGTCCATAC 58.955 38.462 0.00 0.00 0.00 2.39
910 973 4.387256 GCTATAAGCTTGGAGATTACAGCG 59.613 45.833 9.86 0.00 36.97 5.18
929 992 2.552373 GCCCCGCTGGTTTTATAGCTAT 60.552 50.000 11.77 11.77 37.78 2.97
1085 1185 2.437359 GGCAGACGAGCAAGGCAT 60.437 61.111 0.00 0.00 35.83 4.40
1186 1307 1.153107 CGATGATGGGCAGCCTGAA 60.153 57.895 12.43 0.00 0.00 3.02
1620 1750 3.255634 TCTAGACAATAGGGGTAGGCC 57.744 52.381 0.00 0.00 0.00 5.19
1668 1798 7.840342 TTGCAAGTGAAAAAGCAGAAAAATA 57.160 28.000 0.00 0.00 38.35 1.40
1669 1799 6.740411 TTGCAAGTGAAAAAGCAGAAAAAT 57.260 29.167 0.00 0.00 38.35 1.82
1697 1827 3.977999 TCCACGAGTCCCCCAAATATATT 59.022 43.478 0.00 0.00 0.00 1.28
1740 1870 2.625790 GGAGCACACATACCCACAAAAA 59.374 45.455 0.00 0.00 0.00 1.94
1741 1871 2.158534 AGGAGCACACATACCCACAAAA 60.159 45.455 0.00 0.00 0.00 2.44
1742 1872 1.423541 AGGAGCACACATACCCACAAA 59.576 47.619 0.00 0.00 0.00 2.83
1743 1873 1.064003 AGGAGCACACATACCCACAA 58.936 50.000 0.00 0.00 0.00 3.33
1744 1874 1.831106 CTAGGAGCACACATACCCACA 59.169 52.381 0.00 0.00 0.00 4.17
1745 1875 1.831736 ACTAGGAGCACACATACCCAC 59.168 52.381 0.00 0.00 0.00 4.61
1746 1876 2.247699 ACTAGGAGCACACATACCCA 57.752 50.000 0.00 0.00 0.00 4.51
1747 1877 4.957684 ATAACTAGGAGCACACATACCC 57.042 45.455 0.00 0.00 0.00 3.69
1748 1878 5.057149 CCAATAACTAGGAGCACACATACC 58.943 45.833 0.00 0.00 0.00 2.73
1749 1879 5.671493 ACCAATAACTAGGAGCACACATAC 58.329 41.667 0.00 0.00 0.00 2.39
1750 1880 5.950544 ACCAATAACTAGGAGCACACATA 57.049 39.130 0.00 0.00 0.00 2.29
1751 1881 4.844349 ACCAATAACTAGGAGCACACAT 57.156 40.909 0.00 0.00 0.00 3.21
1752 1882 4.775780 ACTACCAATAACTAGGAGCACACA 59.224 41.667 0.00 0.00 0.00 3.72
1753 1883 5.127356 AGACTACCAATAACTAGGAGCACAC 59.873 44.000 0.00 0.00 0.00 3.82
1754 1884 5.127194 CAGACTACCAATAACTAGGAGCACA 59.873 44.000 0.00 0.00 0.00 4.57
1755 1885 5.127356 ACAGACTACCAATAACTAGGAGCAC 59.873 44.000 0.00 0.00 0.00 4.40
1756 1886 5.269991 ACAGACTACCAATAACTAGGAGCA 58.730 41.667 0.00 0.00 0.00 4.26
1757 1887 5.855740 ACAGACTACCAATAACTAGGAGC 57.144 43.478 0.00 0.00 0.00 4.70
1758 1888 6.154706 ACCAACAGACTACCAATAACTAGGAG 59.845 42.308 0.00 0.00 0.00 3.69
1759 1889 6.021030 ACCAACAGACTACCAATAACTAGGA 58.979 40.000 0.00 0.00 0.00 2.94
1760 1890 6.295719 ACCAACAGACTACCAATAACTAGG 57.704 41.667 0.00 0.00 0.00 3.02
1761 1891 9.148104 GTAAACCAACAGACTACCAATAACTAG 57.852 37.037 0.00 0.00 0.00 2.57
1762 1892 8.649591 TGTAAACCAACAGACTACCAATAACTA 58.350 33.333 0.00 0.00 0.00 2.24
1763 1893 7.443272 GTGTAAACCAACAGACTACCAATAACT 59.557 37.037 0.00 0.00 0.00 2.24
1764 1894 7.569957 CGTGTAAACCAACAGACTACCAATAAC 60.570 40.741 0.00 0.00 0.00 1.89
1780 1910 3.195471 TGTGATTGGTCGTGTAAACCA 57.805 42.857 0.00 0.00 44.98 3.67
1781 1911 3.312973 TGTTGTGATTGGTCGTGTAAACC 59.687 43.478 0.00 0.00 37.31 3.27
1782 1912 4.539509 TGTTGTGATTGGTCGTGTAAAC 57.460 40.909 0.00 0.00 0.00 2.01
1783 1913 5.562506 TTTGTTGTGATTGGTCGTGTAAA 57.437 34.783 0.00 0.00 0.00 2.01
1784 1914 5.562506 TTTTGTTGTGATTGGTCGTGTAA 57.437 34.783 0.00 0.00 0.00 2.41
1785 1915 5.562506 TTTTTGTTGTGATTGGTCGTGTA 57.437 34.783 0.00 0.00 0.00 2.90
1786 1916 4.442375 TTTTTGTTGTGATTGGTCGTGT 57.558 36.364 0.00 0.00 0.00 4.49
1787 1917 5.290643 ACAATTTTTGTTGTGATTGGTCGTG 59.709 36.000 0.00 0.00 42.22 4.35
1788 1918 5.415221 ACAATTTTTGTTGTGATTGGTCGT 58.585 33.333 0.00 0.00 42.22 4.34
1789 1919 5.748152 AGACAATTTTTGTTGTGATTGGTCG 59.252 36.000 0.00 0.00 45.52 4.79
1790 1920 6.980397 AGAGACAATTTTTGTTGTGATTGGTC 59.020 34.615 0.00 0.00 45.52 4.02
1791 1921 6.877236 AGAGACAATTTTTGTTGTGATTGGT 58.123 32.000 0.00 0.00 45.52 3.67
1792 1922 8.918658 CATAGAGACAATTTTTGTTGTGATTGG 58.081 33.333 0.00 0.00 45.52 3.16
1793 1923 9.467258 ACATAGAGACAATTTTTGTTGTGATTG 57.533 29.630 0.00 0.00 45.52 2.67
1806 1936 9.620259 GGGAGAGAATTTTACATAGAGACAATT 57.380 33.333 0.00 0.00 0.00 2.32
1807 1937 8.214364 GGGGAGAGAATTTTACATAGAGACAAT 58.786 37.037 0.00 0.00 0.00 2.71
1808 1938 7.403231 AGGGGAGAGAATTTTACATAGAGACAA 59.597 37.037 0.00 0.00 0.00 3.18
1809 1939 6.903534 AGGGGAGAGAATTTTACATAGAGACA 59.096 38.462 0.00 0.00 0.00 3.41
1810 1940 7.368198 AGGGGAGAGAATTTTACATAGAGAC 57.632 40.000 0.00 0.00 0.00 3.36
1811 1941 8.511969 TCTAGGGGAGAGAATTTTACATAGAGA 58.488 37.037 0.00 0.00 0.00 3.10
1812 1942 8.713708 TCTAGGGGAGAGAATTTTACATAGAG 57.286 38.462 0.00 0.00 0.00 2.43
1813 1943 9.502035 TTTCTAGGGGAGAGAATTTTACATAGA 57.498 33.333 0.00 0.00 34.93 1.98
1815 1945 9.901172 GTTTTCTAGGGGAGAGAATTTTACATA 57.099 33.333 0.00 0.00 34.93 2.29
1816 1946 8.615705 AGTTTTCTAGGGGAGAGAATTTTACAT 58.384 33.333 0.00 0.00 34.93 2.29
1817 1947 7.883311 CAGTTTTCTAGGGGAGAGAATTTTACA 59.117 37.037 0.00 0.00 34.93 2.41
1818 1948 7.883833 ACAGTTTTCTAGGGGAGAGAATTTTAC 59.116 37.037 0.00 0.00 34.93 2.01
1819 1949 7.985589 ACAGTTTTCTAGGGGAGAGAATTTTA 58.014 34.615 0.00 0.00 34.93 1.52
1828 1958 3.821033 CACCAAACAGTTTTCTAGGGGAG 59.179 47.826 0.00 0.00 0.00 4.30
1831 1961 6.059484 TCTTACACCAAACAGTTTTCTAGGG 58.941 40.000 0.00 0.00 0.00 3.53
1860 1991 5.973124 AGAAGGGGAAGATAGAAGATTCCAA 59.027 40.000 5.63 0.00 43.58 3.53
1863 1994 8.815565 AAAAAGAAGGGGAAGATAGAAGATTC 57.184 34.615 0.00 0.00 0.00 2.52
1927 2058 3.904339 ACCTCTTGTGTTCTCCATACAGT 59.096 43.478 0.00 0.00 0.00 3.55
1929 2060 6.620877 ATTACCTCTTGTGTTCTCCATACA 57.379 37.500 0.00 0.00 0.00 2.29
1933 2064 8.934023 ATTTTTATTACCTCTTGTGTTCTCCA 57.066 30.769 0.00 0.00 0.00 3.86
2031 2162 1.997311 CTCTGGTGATGGAGGGGCA 60.997 63.158 0.00 0.00 0.00 5.36
2052 2183 6.126854 ACTGTCTACTACAACAAGGTTTTCCT 60.127 38.462 0.00 0.00 45.15 3.36
2055 2186 5.751990 CGACTGTCTACTACAACAAGGTTTT 59.248 40.000 6.21 0.00 37.74 2.43
2177 2308 0.101040 TGTCCGTCTTCGTTCGTGTT 59.899 50.000 0.00 0.00 35.01 3.32
2382 2559 4.698304 CCCGTTCTCATTTTTGCTAGGTAA 59.302 41.667 0.00 0.00 0.00 2.85
2383 2560 4.258543 CCCGTTCTCATTTTTGCTAGGTA 58.741 43.478 0.00 0.00 0.00 3.08
2489 2666 2.362632 CTTCCTCCTCCCGTCGGT 60.363 66.667 11.06 0.00 0.00 4.69
2548 2725 1.153823 CGCTACCCTCACTCGGTTG 60.154 63.158 0.00 0.00 34.66 3.77
2549 2726 2.348888 CCGCTACCCTCACTCGGTT 61.349 63.158 0.00 0.00 35.75 4.44
2550 2727 2.754658 CCGCTACCCTCACTCGGT 60.755 66.667 0.00 0.00 35.75 4.69
2551 2728 2.754658 ACCGCTACCCTCACTCGG 60.755 66.667 0.00 0.00 45.04 4.63
2552 2729 1.716826 GAGACCGCTACCCTCACTCG 61.717 65.000 0.00 0.00 0.00 4.18
2553 2730 0.394625 AGAGACCGCTACCCTCACTC 60.395 60.000 0.00 0.00 0.00 3.51
2554 2731 0.917533 TAGAGACCGCTACCCTCACT 59.082 55.000 0.00 0.00 0.00 3.41
2555 2732 1.881324 GATAGAGACCGCTACCCTCAC 59.119 57.143 0.00 0.00 0.00 3.51
2556 2733 1.775459 AGATAGAGACCGCTACCCTCA 59.225 52.381 0.00 0.00 0.00 3.86
2557 2734 2.572209 AGATAGAGACCGCTACCCTC 57.428 55.000 0.00 0.00 0.00 4.30
2558 2735 2.489437 GGAAGATAGAGACCGCTACCCT 60.489 54.545 0.00 0.00 0.00 4.34
2559 2736 1.887854 GGAAGATAGAGACCGCTACCC 59.112 57.143 0.00 0.00 0.00 3.69
2560 2737 1.887854 GGGAAGATAGAGACCGCTACC 59.112 57.143 0.00 0.00 0.00 3.18
2561 2738 1.887854 GGGGAAGATAGAGACCGCTAC 59.112 57.143 0.00 0.00 33.55 3.58
2562 2739 1.781529 AGGGGAAGATAGAGACCGCTA 59.218 52.381 0.00 0.00 42.36 4.26
2563 2740 0.558712 AGGGGAAGATAGAGACCGCT 59.441 55.000 0.00 0.00 40.07 5.52
2564 2741 0.963225 GAGGGGAAGATAGAGACCGC 59.037 60.000 0.00 0.00 35.95 5.68
2565 2742 1.133450 TGGAGGGGAAGATAGAGACCG 60.133 57.143 0.00 0.00 0.00 4.79
2566 2743 2.777459 TGGAGGGGAAGATAGAGACC 57.223 55.000 0.00 0.00 0.00 3.85
2567 2744 3.917300 TCTTGGAGGGGAAGATAGAGAC 58.083 50.000 0.00 0.00 0.00 3.36
2568 2745 4.841813 ATCTTGGAGGGGAAGATAGAGA 57.158 45.455 0.00 0.00 38.20 3.10
2569 2746 4.904251 TCAATCTTGGAGGGGAAGATAGAG 59.096 45.833 0.00 0.00 38.88 2.43
2570 2747 4.895836 TCAATCTTGGAGGGGAAGATAGA 58.104 43.478 0.00 0.00 38.88 1.98
2571 2748 4.904251 TCTCAATCTTGGAGGGGAAGATAG 59.096 45.833 0.00 0.00 38.88 2.08
2572 2749 4.895836 TCTCAATCTTGGAGGGGAAGATA 58.104 43.478 0.00 0.00 38.88 1.98
2573 2750 3.740780 TCTCAATCTTGGAGGGGAAGAT 58.259 45.455 0.00 0.00 41.07 2.40
2574 2751 3.205519 TCTCAATCTTGGAGGGGAAGA 57.794 47.619 0.00 0.00 34.00 2.87
2575 2752 4.516652 AATCTCAATCTTGGAGGGGAAG 57.483 45.455 0.00 0.00 33.18 3.46
2576 2753 6.391055 AGAATAATCTCAATCTTGGAGGGGAA 59.609 38.462 0.00 0.00 33.18 3.97
2577 2754 5.913534 AGAATAATCTCAATCTTGGAGGGGA 59.086 40.000 0.00 0.00 33.18 4.81
2578 2755 6.198237 AGAATAATCTCAATCTTGGAGGGG 57.802 41.667 0.00 0.00 33.18 4.79
2579 2756 7.776969 TGAAAGAATAATCTCAATCTTGGAGGG 59.223 37.037 0.00 0.00 33.77 4.30
2580 2757 8.743085 TGAAAGAATAATCTCAATCTTGGAGG 57.257 34.615 0.00 0.00 33.77 4.30
2582 2759 9.347240 GGATGAAAGAATAATCTCAATCTTGGA 57.653 33.333 0.00 0.00 33.77 3.53
2583 2760 8.288208 CGGATGAAAGAATAATCTCAATCTTGG 58.712 37.037 0.00 0.00 33.77 3.61
2584 2761 8.834465 ACGGATGAAAGAATAATCTCAATCTTG 58.166 33.333 0.00 0.00 33.77 3.02
2585 2762 8.970859 ACGGATGAAAGAATAATCTCAATCTT 57.029 30.769 0.00 0.00 33.77 2.40
2618 2795 8.873830 ACGAATGTGTAAGATGAATAGACAAAG 58.126 33.333 0.00 0.00 31.37 2.77
2626 2803 9.341899 GCTTTAAAACGAATGTGTAAGATGAAT 57.658 29.630 0.00 0.00 0.00 2.57
2658 2836 8.997301 ACCTTAGGATAGGAAATCCATAGAAT 57.003 34.615 4.77 0.00 40.61 2.40
2664 2842 6.183361 GCCTAAACCTTAGGATAGGAAATCCA 60.183 42.308 26.85 0.00 40.61 3.41
2673 2851 2.709397 GGGCTGCCTAAACCTTAGGATA 59.291 50.000 19.68 0.00 36.85 2.59
2697 2875 4.714632 AGGAACCGACTGAAATGAAGAAA 58.285 39.130 0.00 0.00 0.00 2.52
2713 2891 5.449553 AGATAATCCAATGGACAAGGAACC 58.550 41.667 3.09 0.00 32.98 3.62
2720 2898 5.378230 AGCTCAAGATAATCCAATGGACA 57.622 39.130 3.09 0.00 32.98 4.02
2721 2899 6.705863 AAAGCTCAAGATAATCCAATGGAC 57.294 37.500 3.09 0.00 32.98 4.02
2741 2920 4.201851 CCATAATCACACCGCTCAGAAAAG 60.202 45.833 0.00 0.00 0.00 2.27
2827 3007 6.507958 TCACTTAGAATCTGACTCTCACTG 57.492 41.667 0.00 0.00 0.00 3.66
2833 3013 6.200665 GCATCACATCACTTAGAATCTGACTC 59.799 42.308 0.00 0.00 0.00 3.36
2896 3076 8.466798 AGTAGCGCAACTTCCATTAATTTAATT 58.533 29.630 11.47 0.00 0.00 1.40
2965 3145 5.660460 AGATCTTCACACATATTACACGCA 58.340 37.500 0.00 0.00 0.00 5.24
3133 3313 6.472686 TGCAACACAATTACCTAAAAAGGT 57.527 33.333 2.15 2.15 45.46 3.50
3169 3349 4.431809 TGCACAAAGAAAACAATGGACAG 58.568 39.130 0.00 0.00 0.00 3.51
3185 3365 6.095720 TGAGCTCAAATGAATATCATGCACAA 59.904 34.615 15.67 0.00 37.15 3.33
3258 3438 4.565652 GGTGTCCTTGTCCATAACATGACT 60.566 45.833 0.00 0.00 39.22 3.41
3365 3607 2.095853 GGCTGATGTGGTGAATAACGTG 59.904 50.000 0.00 0.00 0.00 4.49
3373 3615 4.835284 TTTAGTATGGCTGATGTGGTGA 57.165 40.909 0.00 0.00 0.00 4.02
3431 3677 0.323999 TGCATTTGGAGGCTGCATCT 60.324 50.000 10.27 0.00 40.75 2.90
3470 3716 3.438087 CACATGTGAAGGCACTAAGAAGG 59.562 47.826 21.64 0.00 45.36 3.46
3473 3719 3.070878 TGTCACATGTGAAGGCACTAAGA 59.929 43.478 29.42 0.45 45.36 2.10
3476 3722 3.599343 GATGTCACATGTGAAGGCACTA 58.401 45.455 29.42 10.66 45.36 2.74
3556 3802 0.807667 GTTGGCGTCGATGAGCTCAT 60.808 55.000 29.09 29.09 39.70 2.90
3557 3803 1.446099 GTTGGCGTCGATGAGCTCA 60.446 57.895 20.79 20.79 0.00 4.26
3721 3967 1.221466 TTCTGACGTCGGCTTGCTTG 61.221 55.000 19.89 0.00 0.00 4.01
3725 3971 0.439985 CATGTTCTGACGTCGGCTTG 59.560 55.000 19.89 10.79 0.00 4.01
3739 3985 3.997021 GTCATTCTCCTCGTTGTCATGTT 59.003 43.478 0.00 0.00 0.00 2.71
3756 4002 4.005650 AGCAACACATCGATGAAGTCATT 58.994 39.130 31.33 11.52 36.57 2.57
3791 4037 3.566523 GTCTCTCGTGAGGTTGTACTTG 58.433 50.000 14.12 0.00 40.58 3.16
3792 4038 2.557490 GGTCTCTCGTGAGGTTGTACTT 59.443 50.000 14.12 0.00 40.58 2.24
3850 4096 2.094675 GCTTCCACATGTGTAGGCAAT 58.905 47.619 23.79 0.00 0.00 3.56
3853 4099 1.826385 AAGCTTCCACATGTGTAGGC 58.174 50.000 23.79 20.03 0.00 3.93
3910 4156 3.126831 CCCAGCTTCGAACATGATCTAC 58.873 50.000 0.00 0.00 0.00 2.59
4013 4259 6.109359 CCTTTGGTATAGAACTCCTCAACTG 58.891 44.000 0.00 0.00 0.00 3.16
4060 4306 7.344093 TCCAAATAGGCCAAATTGTTGATATCA 59.656 33.333 5.01 0.00 35.34 2.15
4136 4382 0.983378 ACCATGGAGAGGTAGGGCAC 60.983 60.000 21.47 0.00 37.67 5.01
4142 4388 1.763968 CAGTCGACCATGGAGAGGTA 58.236 55.000 21.47 0.00 40.09 3.08
4157 4403 5.181245 TCTTGTAGCCTTTTATGTTGCAGTC 59.819 40.000 0.00 0.00 0.00 3.51
4177 4423 2.673368 GCGTGTTCCTGAAGGTATCTTG 59.327 50.000 0.00 0.00 36.34 3.02
4186 4432 0.107643 TGATGGTGCGTGTTCCTGAA 59.892 50.000 0.00 0.00 0.00 3.02
4271 4517 3.199071 TCTGTCGGCAAAGGTACCATATT 59.801 43.478 15.94 3.09 0.00 1.28
4738 5029 8.267620 TGTGGATAAGAGTTGAACATTGTATG 57.732 34.615 0.00 0.00 0.00 2.39
4847 5191 3.555547 GTGTTTTCTGGATGTTTGCCAAC 59.444 43.478 0.00 0.00 34.44 3.77
5234 5600 8.800370 TTTTACATCACATATGGCAGAACTAA 57.200 30.769 7.80 0.75 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.