Multiple sequence alignment - TraesCS2A01G045500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G045500 chr2A 100.000 4454 0 0 1 4454 17872731 17868278 0.000000e+00 8226
1 TraesCS2A01G045500 chr2D 96.076 2064 51 15 1708 3767 15991518 15989481 0.000000e+00 3336
2 TraesCS2A01G045500 chr2D 83.012 1813 292 11 1727 3534 15935415 15933614 0.000000e+00 1628
3 TraesCS2A01G045500 chr2D 92.358 458 32 2 759 1214 15992172 15991716 0.000000e+00 649
4 TraesCS2A01G045500 chr2B 91.230 2269 153 26 1367 3620 28175753 28173516 0.000000e+00 3046
5 TraesCS2A01G045500 chr2B 82.535 1878 315 11 1713 3585 28095263 28093394 0.000000e+00 1639
6 TraesCS2A01G045500 chr2B 89.234 548 35 6 681 1204 28176342 28175795 0.000000e+00 664
7 TraesCS2A01G045500 chr2B 87.719 342 30 5 297 638 28177229 28176900 5.400000e-104 388
8 TraesCS2A01G045500 chr2B 85.312 320 25 4 1 300 28211995 28211678 1.200000e-80 311
9 TraesCS2A01G045500 chr2B 89.412 170 16 2 4285 4454 66029259 66029092 3.490000e-51 213
10 TraesCS2A01G045500 chr2B 88.068 176 11 2 3618 3783 28173487 28173312 2.720000e-47 200
11 TraesCS2A01G045500 chr2B 97.468 79 2 0 3780 3858 130028243 130028165 7.770000e-28 135
12 TraesCS2A01G045500 chr2B 93.103 87 6 0 3772 3858 519482210 519482124 1.300000e-25 128
13 TraesCS2A01G045500 chr5D 82.831 1625 262 11 1803 3417 6822536 6820919 0.000000e+00 1439
14 TraesCS2A01G045500 chr5D 82.796 186 23 5 3867 4050 34880737 34880915 1.660000e-34 158
15 TraesCS2A01G045500 chr5A 82.737 1622 257 16 1803 3411 3086901 3088512 0.000000e+00 1423
16 TraesCS2A01G045500 chr5A 81.086 1639 296 11 1803 3428 34982753 34981116 0.000000e+00 1297
17 TraesCS2A01G045500 chr5A 97.368 76 2 0 3783 3858 30052639 30052714 3.620000e-26 130
18 TraesCS2A01G045500 chr5B 82.696 1595 263 10 1803 3386 862685 861093 0.000000e+00 1404
19 TraesCS2A01G045500 chr5B 80.804 1667 298 18 1781 3428 44140279 44141942 0.000000e+00 1286
20 TraesCS2A01G045500 chr5B 96.154 78 3 0 3781 3858 700004862 700004785 1.300000e-25 128
21 TraesCS2A01G045500 chr1A 97.470 672 17 0 3783 4454 278672086 278672757 0.000000e+00 1147
22 TraesCS2A01G045500 chr1A 83.333 186 20 8 3863 4045 563787942 563788119 1.280000e-35 161
23 TraesCS2A01G045500 chr4A 79.716 1622 281 31 1783 3375 657071313 657072915 0.000000e+00 1129
24 TraesCS2A01G045500 chr4A 96.207 290 10 1 3863 4151 642930052 642929763 1.450000e-129 473
25 TraesCS2A01G045500 chr4A 96.341 164 6 0 4148 4311 642929575 642929412 2.040000e-68 270
26 TraesCS2A01G045500 chr4A 96.154 78 3 0 3781 3858 615022410 615022333 1.300000e-25 128
27 TraesCS2A01G045500 chr7A 81.952 1158 195 12 2231 3380 47511682 47512833 0.000000e+00 968
28 TraesCS2A01G045500 chr7A 92.734 289 14 2 3863 4151 567493642 567493361 1.150000e-110 411
29 TraesCS2A01G045500 chr7A 91.765 170 14 0 4285 4454 567492872 567492703 2.070000e-58 237
30 TraesCS2A01G045500 chr7A 90.476 126 12 0 4148 4273 567493159 567493034 2.760000e-37 167
31 TraesCS2A01G045500 chr7B 95.779 308 12 1 4148 4454 479755974 479756281 3.090000e-136 496
32 TraesCS2A01G045500 chr7B 96.207 290 10 1 3863 4151 479755497 479755786 1.450000e-129 473
33 TraesCS2A01G045500 chr7B 96.154 78 3 0 3781 3858 697776911 697776988 1.300000e-25 128
34 TraesCS2A01G045500 chr3B 96.886 289 8 1 3863 4151 89174107 89174394 2.410000e-132 483
35 TraesCS2A01G045500 chr3B 93.485 307 20 0 4148 4454 89174596 89174902 1.460000e-124 457
36 TraesCS2A01G045500 chr6B 89.412 170 16 2 4285 4454 11986725 11986558 3.490000e-51 213
37 TraesCS2A01G045500 chr6B 89.286 168 16 2 4287 4454 663148545 663148380 4.510000e-50 209
38 TraesCS2A01G045500 chr6B 96.104 77 3 0 3782 3858 356091292 356091216 4.680000e-25 126
39 TraesCS2A01G045500 chrUn 88.824 170 17 2 4285 4454 313235328 313235161 1.620000e-49 207
40 TraesCS2A01G045500 chrUn 88.824 170 17 2 4285 4454 313239110 313238943 1.620000e-49 207
41 TraesCS2A01G045500 chrUn 85.535 159 20 2 3863 4019 330525628 330525471 3.560000e-36 163
42 TraesCS2A01G045500 chr4D 83.505 194 22 6 3859 4050 325370410 325370225 5.920000e-39 172
43 TraesCS2A01G045500 chr1B 97.368 76 2 0 3783 3858 502911507 502911432 3.620000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G045500 chr2A 17868278 17872731 4453 True 8226.000000 8226 100.000000 1 4454 1 chr2A.!!$R1 4453
1 TraesCS2A01G045500 chr2D 15989481 15992172 2691 True 1992.500000 3336 94.217000 759 3767 2 chr2D.!!$R2 3008
2 TraesCS2A01G045500 chr2D 15933614 15935415 1801 True 1628.000000 1628 83.012000 1727 3534 1 chr2D.!!$R1 1807
3 TraesCS2A01G045500 chr2B 28093394 28095263 1869 True 1639.000000 1639 82.535000 1713 3585 1 chr2B.!!$R1 1872
4 TraesCS2A01G045500 chr2B 28173312 28177229 3917 True 1074.500000 3046 89.062750 297 3783 4 chr2B.!!$R6 3486
5 TraesCS2A01G045500 chr5D 6820919 6822536 1617 True 1439.000000 1439 82.831000 1803 3417 1 chr5D.!!$R1 1614
6 TraesCS2A01G045500 chr5A 3086901 3088512 1611 False 1423.000000 1423 82.737000 1803 3411 1 chr5A.!!$F1 1608
7 TraesCS2A01G045500 chr5A 34981116 34982753 1637 True 1297.000000 1297 81.086000 1803 3428 1 chr5A.!!$R1 1625
8 TraesCS2A01G045500 chr5B 861093 862685 1592 True 1404.000000 1404 82.696000 1803 3386 1 chr5B.!!$R1 1583
9 TraesCS2A01G045500 chr5B 44140279 44141942 1663 False 1286.000000 1286 80.804000 1781 3428 1 chr5B.!!$F1 1647
10 TraesCS2A01G045500 chr1A 278672086 278672757 671 False 1147.000000 1147 97.470000 3783 4454 1 chr1A.!!$F1 671
11 TraesCS2A01G045500 chr4A 657071313 657072915 1602 False 1129.000000 1129 79.716000 1783 3375 1 chr4A.!!$F1 1592
12 TraesCS2A01G045500 chr4A 642929412 642930052 640 True 371.500000 473 96.274000 3863 4311 2 chr4A.!!$R2 448
13 TraesCS2A01G045500 chr7A 47511682 47512833 1151 False 968.000000 968 81.952000 2231 3380 1 chr7A.!!$F1 1149
14 TraesCS2A01G045500 chr7A 567492703 567493642 939 True 271.666667 411 91.658333 3863 4454 3 chr7A.!!$R1 591
15 TraesCS2A01G045500 chr7B 479755497 479756281 784 False 484.500000 496 95.993000 3863 4454 2 chr7B.!!$F2 591
16 TraesCS2A01G045500 chr3B 89174107 89174902 795 False 470.000000 483 95.185500 3863 4454 2 chr3B.!!$F1 591
17 TraesCS2A01G045500 chrUn 313235161 313239110 3949 True 207.000000 207 88.824000 4285 4454 2 chrUn.!!$R2 169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.306228 TGGCATGTGTGAACGAAACG 59.694 50.0 0.00 0.00 0.00 3.60 F
924 1464 0.325272 GGCCGGTTTCTTCTCCTCTT 59.675 55.0 1.90 0.00 0.00 2.85 F
1342 1882 0.106868 CTGCATTGAGCCAGGATCCA 60.107 55.0 15.82 0.00 44.83 3.41 F
1343 1883 0.332293 TGCATTGAGCCAGGATCCAA 59.668 50.0 15.82 0.00 44.83 3.53 F
1348 1888 0.700564 TGAGCCAGGATCCAAAAGCT 59.299 50.0 15.82 15.46 0.00 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1323 1863 0.106868 TGGATCCTGGCTCAATGCAG 60.107 55.000 14.23 0.0 45.15 4.41 R
1899 2450 2.789409 AGAAGTTGAGTATGGTGGCC 57.211 50.000 0.00 0.0 0.00 5.36 R
3273 3847 1.236026 ATAGGTCCACCCTCCCCTCA 61.236 60.000 0.00 0.0 44.81 3.86 R
3298 3872 2.359850 GATGGCAGCCGTGACCAA 60.360 61.111 12.21 0.0 34.72 3.67 R
3557 4134 5.221722 GCTTGATCATTCCCACATACTCCTA 60.222 44.000 0.00 0.0 0.00 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.312399 TCACATTTACCACATTGAGTCAAC 57.688 37.500 7.96 0.00 0.00 3.18
26 27 6.977502 CACATTTACCACATTGAGTCAACAAA 59.022 34.615 7.96 2.95 33.44 2.83
27 28 7.652909 CACATTTACCACATTGAGTCAACAAAT 59.347 33.333 7.96 4.99 33.44 2.32
28 29 8.203485 ACATTTACCACATTGAGTCAACAAATT 58.797 29.630 7.96 0.00 33.44 1.82
37 38 9.787532 ACATTGAGTCAACAAATTATAATTCGG 57.212 29.630 7.96 9.17 33.44 4.30
40 41 8.208718 TGAGTCAACAAATTATAATTCGGAGG 57.791 34.615 11.08 5.55 0.00 4.30
41 42 7.827236 TGAGTCAACAAATTATAATTCGGAGGT 59.173 33.333 11.08 3.19 0.00 3.85
42 43 8.209917 AGTCAACAAATTATAATTCGGAGGTC 57.790 34.615 11.08 1.44 0.00 3.85
44 45 8.621286 GTCAACAAATTATAATTCGGAGGTCAT 58.379 33.333 11.08 0.00 0.00 3.06
53 54 4.982241 ATTCGGAGGTCATAATCATGGT 57.018 40.909 0.00 0.00 32.61 3.55
54 55 3.751479 TCGGAGGTCATAATCATGGTG 57.249 47.619 0.00 0.00 32.61 4.17
55 56 3.304829 TCGGAGGTCATAATCATGGTGA 58.695 45.455 0.00 0.00 32.61 4.02
56 57 3.903714 TCGGAGGTCATAATCATGGTGAT 59.096 43.478 0.00 0.00 39.09 3.06
59 60 4.763793 GGAGGTCATAATCATGGTGATTGG 59.236 45.833 13.82 7.38 45.77 3.16
60 61 4.147321 AGGTCATAATCATGGTGATTGGC 58.853 43.478 13.82 2.39 45.77 4.52
61 62 3.890756 GGTCATAATCATGGTGATTGGCA 59.109 43.478 13.82 0.00 45.77 4.92
62 63 4.525487 GGTCATAATCATGGTGATTGGCAT 59.475 41.667 13.82 0.00 45.77 4.40
63 64 5.466819 GTCATAATCATGGTGATTGGCATG 58.533 41.667 13.82 10.17 45.77 4.06
64 65 5.010314 GTCATAATCATGGTGATTGGCATGT 59.990 40.000 13.82 0.00 45.77 3.21
65 66 3.812156 AATCATGGTGATTGGCATGTG 57.188 42.857 4.50 0.00 44.68 3.21
66 67 2.219080 TCATGGTGATTGGCATGTGT 57.781 45.000 0.00 0.00 0.00 3.72
67 68 1.819903 TCATGGTGATTGGCATGTGTG 59.180 47.619 0.00 0.00 0.00 3.82
69 70 1.992538 TGGTGATTGGCATGTGTGAA 58.007 45.000 0.00 0.00 0.00 3.18
70 71 1.612950 TGGTGATTGGCATGTGTGAAC 59.387 47.619 0.00 0.00 0.00 3.18
71 72 1.401409 GGTGATTGGCATGTGTGAACG 60.401 52.381 0.00 0.00 0.00 3.95
72 73 1.535028 GTGATTGGCATGTGTGAACGA 59.465 47.619 0.00 0.00 0.00 3.85
74 75 2.620585 TGATTGGCATGTGTGAACGAAA 59.379 40.909 0.00 0.00 0.00 3.46
75 76 2.483583 TTGGCATGTGTGAACGAAAC 57.516 45.000 0.00 0.00 0.00 2.78
76 77 0.306228 TGGCATGTGTGAACGAAACG 59.694 50.000 0.00 0.00 0.00 3.60
77 78 0.385473 GGCATGTGTGAACGAAACGG 60.385 55.000 0.00 0.00 0.00 4.44
79 80 1.196808 GCATGTGTGAACGAAACGGAT 59.803 47.619 0.00 0.00 0.00 4.18
80 81 2.413796 GCATGTGTGAACGAAACGGATA 59.586 45.455 0.00 0.00 0.00 2.59
81 82 3.723835 GCATGTGTGAACGAAACGGATAC 60.724 47.826 0.00 0.00 0.00 2.24
83 84 3.655486 TGTGTGAACGAAACGGATACAT 58.345 40.909 0.00 0.00 0.00 2.29
85 86 5.228665 TGTGTGAACGAAACGGATACATAA 58.771 37.500 0.00 0.00 0.00 1.90
86 87 5.695363 TGTGTGAACGAAACGGATACATAAA 59.305 36.000 0.00 0.00 0.00 1.40
88 89 5.927689 TGTGAACGAAACGGATACATAAAGT 59.072 36.000 0.00 0.00 0.00 2.66
89 90 6.424509 TGTGAACGAAACGGATACATAAAGTT 59.575 34.615 0.00 0.00 0.00 2.66
91 92 5.212589 ACGAAACGGATACATAAAGTTGC 57.787 39.130 0.00 0.00 0.00 4.17
92 93 4.201647 ACGAAACGGATACATAAAGTTGCG 60.202 41.667 5.58 5.58 46.05 4.85
93 94 4.201647 CGAAACGGATACATAAAGTTGCGT 60.202 41.667 0.00 0.00 38.59 5.24
95 96 3.852286 ACGGATACATAAAGTTGCGTCA 58.148 40.909 0.00 0.00 33.01 4.35
96 97 4.439057 ACGGATACATAAAGTTGCGTCAT 58.561 39.130 0.00 0.00 33.01 3.06
98 99 5.353123 ACGGATACATAAAGTTGCGTCATTT 59.647 36.000 0.00 0.00 33.01 2.32
99 100 6.535865 ACGGATACATAAAGTTGCGTCATTTA 59.464 34.615 0.00 0.00 33.01 1.40
100 101 7.225931 ACGGATACATAAAGTTGCGTCATTTAT 59.774 33.333 0.00 0.00 33.01 1.40
101 102 7.740346 CGGATACATAAAGTTGCGTCATTTATC 59.260 37.037 0.00 0.00 28.98 1.75
102 103 8.556194 GGATACATAAAGTTGCGTCATTTATCA 58.444 33.333 0.00 0.00 28.98 2.15
103 104 9.929722 GATACATAAAGTTGCGTCATTTATCAA 57.070 29.630 0.00 0.00 28.98 2.57
116 117 8.327429 GCGTCATTTATCAATTATTTTTGTGGG 58.673 33.333 0.00 0.00 0.00 4.61
118 119 8.327429 GTCATTTATCAATTATTTTTGTGGGCG 58.673 33.333 0.00 0.00 0.00 6.13
119 120 8.037758 TCATTTATCAATTATTTTTGTGGGCGT 58.962 29.630 0.00 0.00 0.00 5.68
120 121 7.588143 TTTATCAATTATTTTTGTGGGCGTG 57.412 32.000 0.00 0.00 0.00 5.34
121 122 4.592485 TCAATTATTTTTGTGGGCGTGT 57.408 36.364 0.00 0.00 0.00 4.49
122 123 4.950050 TCAATTATTTTTGTGGGCGTGTT 58.050 34.783 0.00 0.00 0.00 3.32
123 124 5.360591 TCAATTATTTTTGTGGGCGTGTTT 58.639 33.333 0.00 0.00 0.00 2.83
124 125 5.817816 TCAATTATTTTTGTGGGCGTGTTTT 59.182 32.000 0.00 0.00 0.00 2.43
183 184 6.868339 ACAAACATCTACTTAAAAAGCATGGC 59.132 34.615 0.00 0.00 0.00 4.40
184 185 6.588719 AACATCTACTTAAAAAGCATGGCA 57.411 33.333 0.00 0.00 0.00 4.92
185 186 6.588719 ACATCTACTTAAAAAGCATGGCAA 57.411 33.333 0.00 0.00 0.00 4.52
186 187 7.174107 ACATCTACTTAAAAAGCATGGCAAT 57.826 32.000 0.00 0.00 0.00 3.56
187 188 7.037438 ACATCTACTTAAAAAGCATGGCAATG 58.963 34.615 0.00 0.00 36.82 2.82
188 189 6.832520 TCTACTTAAAAAGCATGGCAATGA 57.167 33.333 4.87 0.00 35.67 2.57
189 190 7.225784 TCTACTTAAAAAGCATGGCAATGAA 57.774 32.000 4.87 0.00 35.67 2.57
190 191 7.090173 TCTACTTAAAAAGCATGGCAATGAAC 58.910 34.615 4.87 0.00 35.67 3.18
191 192 5.609423 ACTTAAAAAGCATGGCAATGAACA 58.391 33.333 4.87 0.00 35.67 3.18
192 193 6.232692 ACTTAAAAAGCATGGCAATGAACAT 58.767 32.000 4.87 0.00 35.67 2.71
193 194 6.148150 ACTTAAAAAGCATGGCAATGAACATG 59.852 34.615 4.87 12.08 45.49 3.21
200 201 4.357142 CATGGCAATGAACATGCTTACTC 58.643 43.478 0.00 0.00 43.34 2.59
201 202 3.419943 TGGCAATGAACATGCTTACTCA 58.580 40.909 0.00 0.00 43.34 3.41
202 203 3.441222 TGGCAATGAACATGCTTACTCAG 59.559 43.478 0.00 0.00 43.34 3.35
216 217 4.036498 GCTTACTCAGCTAGTCAATACGGA 59.964 45.833 0.00 0.00 46.27 4.69
218 219 8.115887 GCTTACTCAGCTAGTCAATACGGACT 62.116 46.154 1.15 1.15 46.27 3.85
222 223 4.945543 TCAGCTAGTCAATACGGACTAACA 59.054 41.667 4.78 0.00 46.59 2.41
224 225 5.687730 CAGCTAGTCAATACGGACTAACATG 59.312 44.000 4.78 0.00 46.59 3.21
225 226 5.360144 AGCTAGTCAATACGGACTAACATGT 59.640 40.000 0.00 0.00 46.59 3.21
226 227 6.040878 GCTAGTCAATACGGACTAACATGTT 58.959 40.000 16.68 16.68 46.59 2.71
227 228 7.067859 AGCTAGTCAATACGGACTAACATGTTA 59.932 37.037 17.16 17.16 46.59 2.41
229 230 9.745880 CTAGTCAATACGGACTAACATGTTATT 57.254 33.333 18.35 13.18 46.59 1.40
230 231 8.644318 AGTCAATACGGACTAACATGTTATTC 57.356 34.615 21.66 21.66 45.95 1.75
231 232 8.255206 AGTCAATACGGACTAACATGTTATTCA 58.745 33.333 27.42 14.33 45.95 2.57
232 233 9.042008 GTCAATACGGACTAACATGTTATTCAT 57.958 33.333 27.42 20.08 34.56 2.57
233 234 9.256477 TCAATACGGACTAACATGTTATTCATC 57.744 33.333 27.42 18.27 34.09 2.92
238 239 7.287005 ACGGACTAACATGTTATTCATCTAGGA 59.713 37.037 27.42 4.22 34.09 2.94
239 240 8.141909 CGGACTAACATGTTATTCATCTAGGAA 58.858 37.037 27.42 4.04 34.09 3.36
240 241 9.262358 GGACTAACATGTTATTCATCTAGGAAC 57.738 37.037 27.42 10.84 34.09 3.62
253 254 9.829507 ATTCATCTAGGAACTTCATAGACAAAG 57.170 33.333 13.95 6.54 41.73 2.77
254 255 7.268586 TCATCTAGGAACTTCATAGACAAAGC 58.731 38.462 13.95 0.00 41.73 3.51
255 256 6.605471 TCTAGGAACTTCATAGACAAAGCA 57.395 37.500 8.74 0.00 35.18 3.91
256 257 6.398918 TCTAGGAACTTCATAGACAAAGCAC 58.601 40.000 8.74 0.00 35.18 4.40
257 258 4.973168 AGGAACTTCATAGACAAAGCACA 58.027 39.130 0.00 0.00 27.25 4.57
258 259 5.564550 AGGAACTTCATAGACAAAGCACAT 58.435 37.500 0.00 0.00 27.25 3.21
259 260 5.645497 AGGAACTTCATAGACAAAGCACATC 59.355 40.000 0.00 0.00 27.25 3.06
261 262 6.402983 GGAACTTCATAGACAAAGCACATCAG 60.403 42.308 0.00 0.00 0.00 2.90
262 263 4.940046 ACTTCATAGACAAAGCACATCAGG 59.060 41.667 0.00 0.00 0.00 3.86
265 266 2.486472 AGACAAAGCACATCAGGAGG 57.514 50.000 0.00 0.00 0.00 4.30
266 267 1.980765 AGACAAAGCACATCAGGAGGA 59.019 47.619 0.00 0.00 0.00 3.71
267 268 2.373169 AGACAAAGCACATCAGGAGGAA 59.627 45.455 0.00 0.00 0.00 3.36
269 270 3.565307 ACAAAGCACATCAGGAGGAAAA 58.435 40.909 0.00 0.00 0.00 2.29
271 272 3.795688 AAGCACATCAGGAGGAAAAGA 57.204 42.857 0.00 0.00 0.00 2.52
272 273 3.347077 AGCACATCAGGAGGAAAAGAG 57.653 47.619 0.00 0.00 0.00 2.85
273 274 2.909006 AGCACATCAGGAGGAAAAGAGA 59.091 45.455 0.00 0.00 0.00 3.10
274 275 3.328931 AGCACATCAGGAGGAAAAGAGAA 59.671 43.478 0.00 0.00 0.00 2.87
277 278 5.184671 GCACATCAGGAGGAAAAGAGAAAAT 59.815 40.000 0.00 0.00 0.00 1.82
278 279 6.624642 GCACATCAGGAGGAAAAGAGAAAATC 60.625 42.308 0.00 0.00 0.00 2.17
279 280 6.432162 CACATCAGGAGGAAAAGAGAAAATCA 59.568 38.462 0.00 0.00 0.00 2.57
280 281 7.006509 ACATCAGGAGGAAAAGAGAAAATCAA 58.993 34.615 0.00 0.00 0.00 2.57
281 282 7.673082 ACATCAGGAGGAAAAGAGAAAATCAAT 59.327 33.333 0.00 0.00 0.00 2.57
283 284 6.435277 TCAGGAGGAAAAGAGAAAATCAATGG 59.565 38.462 0.00 0.00 0.00 3.16
284 285 6.210185 CAGGAGGAAAAGAGAAAATCAATGGT 59.790 38.462 0.00 0.00 0.00 3.55
286 287 6.015095 GGAGGAAAAGAGAAAATCAATGGTGT 60.015 38.462 0.00 0.00 0.00 4.16
287 288 6.986250 AGGAAAAGAGAAAATCAATGGTGTC 58.014 36.000 0.00 0.00 0.00 3.67
288 289 6.015095 AGGAAAAGAGAAAATCAATGGTGTCC 60.015 38.462 0.00 0.00 0.00 4.02
289 290 6.239289 GGAAAAGAGAAAATCAATGGTGTCCA 60.239 38.462 0.00 0.00 38.19 4.02
290 291 5.712152 AAGAGAAAATCAATGGTGTCCAC 57.288 39.130 0.00 0.00 35.80 4.02
300 301 2.357517 GTGTCCACCTCACGGCAG 60.358 66.667 0.00 0.00 0.00 4.85
302 303 2.048127 GTCCACCTCACGGCAGTC 60.048 66.667 0.00 0.00 0.00 3.51
323 324 3.012518 CGTCCTGAGCAATCTCCAAATT 58.987 45.455 0.00 0.00 38.58 1.82
339 340 7.378181 TCTCCAAATTATTCAAGAAAGCAACC 58.622 34.615 0.00 0.00 0.00 3.77
364 365 4.898861 TGTCTGGATTTTAAAAGGGCAAGT 59.101 37.500 6.79 0.00 0.00 3.16
372 373 5.407407 TTTAAAAGGGCAAGTTGTCACAA 57.593 34.783 10.13 0.00 0.00 3.33
394 395 4.179298 ACTCATGATGACTCGTTGATGTG 58.821 43.478 0.00 0.00 0.00 3.21
413 414 3.193903 TGTGATGAATTGCACCATCCTTG 59.806 43.478 15.95 0.00 38.63 3.61
414 415 3.194116 GTGATGAATTGCACCATCCTTGT 59.806 43.478 15.95 0.00 38.63 3.16
415 416 4.398988 GTGATGAATTGCACCATCCTTGTA 59.601 41.667 15.95 0.47 38.63 2.41
425 426 6.125719 TGCACCATCCTTGTAATATTAAGCA 58.874 36.000 0.00 0.00 0.00 3.91
445 446 4.081420 AGCATAGTTTGTCCGAATCTGAGT 60.081 41.667 0.00 0.00 0.00 3.41
449 450 2.808543 GTTTGTCCGAATCTGAGTTGCT 59.191 45.455 0.00 0.00 0.00 3.91
471 472 6.917477 TGCTCAGTGATTTGTTTTAACATGAC 59.083 34.615 0.00 0.00 38.95 3.06
476 477 5.689961 GTGATTTGTTTTAACATGACGCCTT 59.310 36.000 0.00 0.00 38.95 4.35
480 481 8.825667 ATTTGTTTTAACATGACGCCTTTTAT 57.174 26.923 0.00 0.00 38.95 1.40
493 494 6.128282 TGACGCCTTTTATCTCATCTTTTCAC 60.128 38.462 0.00 0.00 0.00 3.18
495 496 6.375455 ACGCCTTTTATCTCATCTTTTCACAT 59.625 34.615 0.00 0.00 0.00 3.21
496 497 6.690098 CGCCTTTTATCTCATCTTTTCACATG 59.310 38.462 0.00 0.00 0.00 3.21
497 498 7.414429 CGCCTTTTATCTCATCTTTTCACATGA 60.414 37.037 0.00 0.00 0.00 3.07
498 499 8.246180 GCCTTTTATCTCATCTTTTCACATGAA 58.754 33.333 0.00 0.00 0.00 2.57
538 539 4.008330 AGACCTGAGCTGTTGATTTCATG 58.992 43.478 0.00 0.00 0.00 3.07
549 550 5.009631 TGTTGATTTCATGAAGTAGTGGGG 58.990 41.667 8.41 0.00 0.00 4.96
599 600 9.549078 CTCCCATATAAAAAGAGAAGGTAAGAC 57.451 37.037 0.00 0.00 0.00 3.01
600 601 9.280456 TCCCATATAAAAAGAGAAGGTAAGACT 57.720 33.333 0.00 0.00 0.00 3.24
638 639 8.727100 ATTACTCATCCTACTTACATCCATGA 57.273 34.615 0.00 0.00 0.00 3.07
651 652 2.411628 TCCATGATGTGTAAACCCGG 57.588 50.000 0.00 0.00 0.00 5.73
652 653 0.738389 CCATGATGTGTAAACCCGGC 59.262 55.000 0.00 0.00 0.00 6.13
653 654 1.458398 CATGATGTGTAAACCCGGCA 58.542 50.000 0.00 0.00 0.00 5.69
654 655 1.815613 CATGATGTGTAAACCCGGCAA 59.184 47.619 0.00 0.00 0.00 4.52
671 925 1.251251 CAAACCTCCCCTGAAAGCTG 58.749 55.000 0.00 0.00 0.00 4.24
723 1239 3.703052 CTCCTCAATTATTTGCCTGGCTT 59.297 43.478 21.03 7.38 32.61 4.35
739 1255 5.644644 CCTGGCTTAGCTTAACAAAATGAG 58.355 41.667 3.59 0.00 0.00 2.90
741 1257 6.254281 TGGCTTAGCTTAACAAAATGAGAC 57.746 37.500 3.59 0.00 0.00 3.36
743 1259 5.393135 GGCTTAGCTTAACAAAATGAGACCC 60.393 44.000 3.59 0.00 0.00 4.46
752 1268 1.064825 AAATGAGACCCTGAACCGGT 58.935 50.000 0.00 0.00 35.88 5.28
795 1333 1.536284 GCCGTATCTCAGGTTTCCTCG 60.536 57.143 0.00 0.00 0.00 4.63
796 1334 1.067212 CCGTATCTCAGGTTTCCTCGG 59.933 57.143 0.00 0.00 29.70 4.63
924 1464 0.325272 GGCCGGTTTCTTCTCCTCTT 59.675 55.000 1.90 0.00 0.00 2.85
937 1477 2.438763 TCTCCTCTTCTCCCCGTACTAG 59.561 54.545 0.00 0.00 0.00 2.57
1004 1544 2.517450 GCTGCACGTACGAGATGGC 61.517 63.158 24.41 16.32 0.00 4.40
1076 1616 1.493446 TGGCATCAGCATGGAGAAGAT 59.507 47.619 0.00 0.00 44.61 2.40
1105 1645 2.031516 GAGACGTCGTCGGGTGAGA 61.032 63.158 19.11 0.00 41.85 3.27
1131 1671 1.022451 GCAACTACCGCGGATGGAAA 61.022 55.000 35.90 8.49 0.00 3.13
1178 1718 2.273123 CCATGCCAGCTACCTGCA 59.727 61.111 2.44 2.44 45.94 4.41
1191 1731 3.120060 GCTACCTGCATCTGTCTGTTTTG 60.120 47.826 0.00 0.00 42.31 2.44
1209 1749 3.462483 TTGCTTGAAACAGTAGGACGA 57.538 42.857 0.00 0.00 0.00 4.20
1210 1750 3.678056 TGCTTGAAACAGTAGGACGAT 57.322 42.857 0.00 0.00 0.00 3.73
1211 1751 3.325870 TGCTTGAAACAGTAGGACGATG 58.674 45.455 0.00 0.00 0.00 3.84
1214 1754 4.143094 GCTTGAAACAGTAGGACGATGTTC 60.143 45.833 0.00 0.00 36.18 3.18
1217 1757 6.335471 TGAAACAGTAGGACGATGTTCTTA 57.665 37.500 0.00 0.00 36.18 2.10
1219 1759 5.979288 AACAGTAGGACGATGTTCTTACT 57.021 39.130 0.00 0.00 38.57 2.24
1221 1761 6.434018 ACAGTAGGACGATGTTCTTACTAC 57.566 41.667 0.00 0.00 36.53 2.73
1222 1762 5.942236 ACAGTAGGACGATGTTCTTACTACA 59.058 40.000 6.27 0.00 36.53 2.74
1223 1763 6.128063 ACAGTAGGACGATGTTCTTACTACAC 60.128 42.308 6.27 0.00 36.53 2.90
1225 1765 5.056894 AGGACGATGTTCTTACTACACAC 57.943 43.478 0.00 0.00 0.00 3.82
1227 1767 4.857588 GGACGATGTTCTTACTACACACTG 59.142 45.833 0.00 0.00 0.00 3.66
1231 1771 4.617253 TGTTCTTACTACACACTGCCAT 57.383 40.909 0.00 0.00 0.00 4.40
1233 1773 5.475719 TGTTCTTACTACACACTGCCATAC 58.524 41.667 0.00 0.00 0.00 2.39
1235 1775 3.760151 TCTTACTACACACTGCCATACGT 59.240 43.478 0.00 0.00 0.00 3.57
1236 1776 2.649331 ACTACACACTGCCATACGTC 57.351 50.000 0.00 0.00 0.00 4.34
1237 1777 1.890489 ACTACACACTGCCATACGTCA 59.110 47.619 0.00 0.00 0.00 4.35
1240 1780 3.603158 ACACACTGCCATACGTCATAA 57.397 42.857 0.00 0.00 0.00 1.90
1242 1782 4.513442 ACACACTGCCATACGTCATAATT 58.487 39.130 0.00 0.00 0.00 1.40
1249 1789 6.594159 ACTGCCATACGTCATAATTTATAGGC 59.406 38.462 0.00 0.00 37.75 3.93
1250 1790 6.468543 TGCCATACGTCATAATTTATAGGCA 58.531 36.000 0.00 0.00 44.13 4.75
1251 1791 7.109501 TGCCATACGTCATAATTTATAGGCAT 58.890 34.615 0.00 0.00 41.79 4.40
1252 1792 7.065683 TGCCATACGTCATAATTTATAGGCATG 59.934 37.037 0.00 0.00 41.79 4.06
1254 1794 9.594478 CCATACGTCATAATTTATAGGCATGTA 57.406 33.333 0.00 0.00 0.00 2.29
1258 1798 9.151471 ACGTCATAATTTATAGGCATGTACATC 57.849 33.333 5.07 1.16 0.00 3.06
1265 1805 7.612065 TTTATAGGCATGTACATCTACCTGT 57.388 36.000 23.08 20.11 0.00 4.00
1266 1806 7.612065 TTATAGGCATGTACATCTACCTGTT 57.388 36.000 23.08 15.83 0.00 3.16
1267 1807 4.142609 AGGCATGTACATCTACCTGTTG 57.857 45.455 17.02 2.57 0.00 3.33
1268 1808 2.614057 GGCATGTACATCTACCTGTTGC 59.386 50.000 5.07 4.53 0.00 4.17
1269 1809 3.535561 GCATGTACATCTACCTGTTGCT 58.464 45.455 5.07 0.00 0.00 3.91
1271 1811 4.396166 GCATGTACATCTACCTGTTGCTTT 59.604 41.667 5.07 0.00 0.00 3.51
1272 1812 5.106157 GCATGTACATCTACCTGTTGCTTTT 60.106 40.000 5.07 0.00 0.00 2.27
1274 1814 6.554334 TGTACATCTACCTGTTGCTTTTTC 57.446 37.500 0.00 0.00 0.00 2.29
1275 1815 6.058833 TGTACATCTACCTGTTGCTTTTTCA 58.941 36.000 0.00 0.00 0.00 2.69
1276 1816 6.544197 TGTACATCTACCTGTTGCTTTTTCAA 59.456 34.615 0.00 0.00 0.00 2.69
1279 1819 6.770785 ACATCTACCTGTTGCTTTTTCAACTA 59.229 34.615 7.93 0.00 44.83 2.24
1281 1821 7.817418 TCTACCTGTTGCTTTTTCAACTATT 57.183 32.000 7.93 0.00 44.83 1.73
1284 1824 9.959749 CTACCTGTTGCTTTTTCAACTATTTTA 57.040 29.630 7.93 0.00 44.83 1.52
1286 1826 9.313118 ACCTGTTGCTTTTTCAACTATTTTAAG 57.687 29.630 7.93 0.00 44.83 1.85
1287 1827 8.764287 CCTGTTGCTTTTTCAACTATTTTAAGG 58.236 33.333 7.93 1.72 44.83 2.69
1288 1828 8.137210 TGTTGCTTTTTCAACTATTTTAAGGC 57.863 30.769 7.93 0.00 44.83 4.35
1289 1829 7.984617 TGTTGCTTTTTCAACTATTTTAAGGCT 59.015 29.630 7.93 0.00 44.83 4.58
1290 1830 8.826710 GTTGCTTTTTCAACTATTTTAAGGCTT 58.173 29.630 4.58 4.58 42.15 4.35
1291 1831 8.587952 TGCTTTTTCAACTATTTTAAGGCTTC 57.412 30.769 1.30 0.00 0.00 3.86
1297 1837 9.787435 TTTCAACTATTTTAAGGCTTCTAGACA 57.213 29.630 1.30 0.00 0.00 3.41
1300 1840 9.383519 CAACTATTTTAAGGCTTCTAGACATGA 57.616 33.333 1.30 0.00 0.00 3.07
1324 1864 9.508642 TGATTTTATTTTTAAAAATTCCGGGCT 57.491 25.926 26.56 7.71 39.24 5.19
1325 1865 9.767684 GATTTTATTTTTAAAAATTCCGGGCTG 57.232 29.630 26.56 0.00 39.24 4.85
1326 1866 6.729391 TTATTTTTAAAAATTCCGGGCTGC 57.271 33.333 26.56 0.00 39.24 5.25
1327 1867 3.753294 TTTTAAAAATTCCGGGCTGCA 57.247 38.095 0.00 0.00 0.00 4.41
1328 1868 3.971245 TTTAAAAATTCCGGGCTGCAT 57.029 38.095 0.00 0.00 0.00 3.96
1329 1869 3.971245 TTAAAAATTCCGGGCTGCATT 57.029 38.095 0.00 0.00 0.00 3.56
1330 1870 2.097680 AAAAATTCCGGGCTGCATTG 57.902 45.000 0.00 0.00 0.00 2.82
1331 1871 1.265236 AAAATTCCGGGCTGCATTGA 58.735 45.000 0.00 0.00 0.00 2.57
1333 1873 1.669999 AATTCCGGGCTGCATTGAGC 61.670 55.000 0.00 0.00 45.96 4.26
1339 1879 4.254721 GCTGCATTGAGCCAGGAT 57.745 55.556 0.00 0.00 44.83 3.24
1340 1880 2.031360 GCTGCATTGAGCCAGGATC 58.969 57.895 0.00 0.00 44.83 3.36
1342 1882 0.106868 CTGCATTGAGCCAGGATCCA 60.107 55.000 15.82 0.00 44.83 3.41
1343 1883 0.332293 TGCATTGAGCCAGGATCCAA 59.668 50.000 15.82 0.00 44.83 3.53
1345 1885 1.826720 GCATTGAGCCAGGATCCAAAA 59.173 47.619 15.82 0.00 37.23 2.44
1346 1886 2.159142 GCATTGAGCCAGGATCCAAAAG 60.159 50.000 15.82 0.00 37.23 2.27
1347 1887 1.549203 TTGAGCCAGGATCCAAAAGC 58.451 50.000 15.82 10.71 0.00 3.51
1348 1888 0.700564 TGAGCCAGGATCCAAAAGCT 59.299 50.000 15.82 15.46 0.00 3.74
1349 1889 1.076024 TGAGCCAGGATCCAAAAGCTT 59.924 47.619 15.82 0.00 0.00 3.74
1350 1890 2.174360 GAGCCAGGATCCAAAAGCTTT 58.826 47.619 15.82 5.69 0.00 3.51
1352 1892 2.301009 AGCCAGGATCCAAAAGCTTTTG 59.699 45.455 34.94 34.94 45.34 2.44
1354 1894 3.862264 GCCAGGATCCAAAAGCTTTTGTC 60.862 47.826 37.05 30.41 44.52 3.18
1355 1895 3.321682 CCAGGATCCAAAAGCTTTTGTCA 59.678 43.478 37.05 27.76 44.52 3.58
1356 1896 4.020839 CCAGGATCCAAAAGCTTTTGTCAT 60.021 41.667 37.05 30.19 44.52 3.06
1357 1897 4.927425 CAGGATCCAAAAGCTTTTGTCATG 59.073 41.667 37.05 32.06 44.52 3.07
1358 1898 4.020839 AGGATCCAAAAGCTTTTGTCATGG 60.021 41.667 37.05 27.78 44.52 3.66
1359 1899 4.262592 GGATCCAAAAGCTTTTGTCATGGT 60.263 41.667 37.05 24.57 44.52 3.55
1360 1900 5.047377 GGATCCAAAAGCTTTTGTCATGGTA 60.047 40.000 37.05 19.84 44.52 3.25
1380 1920 6.558009 TGGTATATGAGTACACGAACAGAAC 58.442 40.000 0.00 0.00 0.00 3.01
1381 1921 6.151480 TGGTATATGAGTACACGAACAGAACA 59.849 38.462 0.00 0.00 0.00 3.18
1389 1929 2.286772 ACACGAACAGAACAATTTCGGC 60.287 45.455 7.75 0.00 45.04 5.54
1491 2034 1.464997 GCAAGAATCCGTGGACTTGAC 59.535 52.381 18.40 9.30 41.16 3.18
1493 2036 3.616560 GCAAGAATCCGTGGACTTGACTA 60.617 47.826 18.40 0.00 41.16 2.59
1509 2052 7.283625 ACTTGACTATCTGTATCATGTCTCC 57.716 40.000 0.00 0.00 0.00 3.71
1526 2071 1.002251 CTCCTCGTCATTCGGCTAGAC 60.002 57.143 0.00 0.00 40.32 2.59
1533 2078 2.103263 GTCATTCGGCTAGACCTTGGAT 59.897 50.000 0.00 0.00 35.61 3.41
1543 2088 3.719214 CCTTGGATAAGGCGCGTC 58.281 61.111 0.21 0.21 46.47 5.19
1564 2109 6.402550 GCGTCTTTTGTCATGATAGTCATTGT 60.403 38.462 0.00 0.00 34.28 2.71
1565 2110 7.201522 GCGTCTTTTGTCATGATAGTCATTGTA 60.202 37.037 0.00 0.00 34.28 2.41
1566 2111 8.323854 CGTCTTTTGTCATGATAGTCATTGTAG 58.676 37.037 0.00 0.00 34.28 2.74
1567 2112 8.607459 GTCTTTTGTCATGATAGTCATTGTAGG 58.393 37.037 0.00 0.00 34.28 3.18
1568 2113 8.539544 TCTTTTGTCATGATAGTCATTGTAGGA 58.460 33.333 0.00 0.00 34.28 2.94
1569 2114 9.334947 CTTTTGTCATGATAGTCATTGTAGGAT 57.665 33.333 0.00 0.00 34.28 3.24
1570 2115 9.685276 TTTTGTCATGATAGTCATTGTAGGATT 57.315 29.630 0.00 0.00 34.28 3.01
1571 2116 8.667076 TTGTCATGATAGTCATTGTAGGATTG 57.333 34.615 0.00 0.00 34.28 2.67
1572 2117 8.021898 TGTCATGATAGTCATTGTAGGATTGA 57.978 34.615 0.00 0.00 34.28 2.57
1573 2118 8.654094 TGTCATGATAGTCATTGTAGGATTGAT 58.346 33.333 0.00 0.00 34.28 2.57
1574 2119 9.499479 GTCATGATAGTCATTGTAGGATTGATT 57.501 33.333 0.00 0.00 34.28 2.57
1575 2120 9.498176 TCATGATAGTCATTGTAGGATTGATTG 57.502 33.333 0.00 0.00 34.28 2.67
1586 2131 8.985315 TTGTAGGATTGATTGCTAATCTCATT 57.015 30.769 9.34 0.00 38.72 2.57
1587 2132 8.387190 TGTAGGATTGATTGCTAATCTCATTG 57.613 34.615 9.34 0.00 38.72 2.82
1633 2178 9.182214 AGACATTGTATCAGCATATTGACTTTT 57.818 29.630 0.00 0.00 0.00 2.27
3048 3622 4.441079 GCTATGATGTCATGCTTTTGGCTT 60.441 41.667 5.78 0.00 42.39 4.35
3273 3847 2.801631 GCTGGCGCAGGACCTAGAT 61.802 63.158 10.83 0.00 35.78 1.98
3548 4125 1.924524 CAACATACACCCTAGCGTTCG 59.075 52.381 0.00 0.00 0.00 3.95
3555 4132 1.340248 CACCCTAGCGTTCGATGGTAT 59.660 52.381 0.00 0.00 0.00 2.73
3556 4133 2.555325 CACCCTAGCGTTCGATGGTATA 59.445 50.000 0.00 0.00 0.00 1.47
3557 4134 3.192844 CACCCTAGCGTTCGATGGTATAT 59.807 47.826 0.00 0.00 0.00 0.86
3558 4135 4.397103 CACCCTAGCGTTCGATGGTATATA 59.603 45.833 0.00 0.00 0.00 0.86
3559 4136 4.639310 ACCCTAGCGTTCGATGGTATATAG 59.361 45.833 0.00 0.00 0.00 1.31
3560 4137 4.036498 CCCTAGCGTTCGATGGTATATAGG 59.964 50.000 0.00 0.00 0.00 2.57
3561 4138 4.880120 CCTAGCGTTCGATGGTATATAGGA 59.120 45.833 0.00 0.00 30.93 2.94
3562 4139 4.966965 AGCGTTCGATGGTATATAGGAG 57.033 45.455 0.00 0.00 0.00 3.69
3588 4165 3.035363 TGGGAATGATCAAGCATGCATT 58.965 40.909 21.98 9.50 33.97 3.56
3638 4249 0.879090 TGCACAGCATCTCAAAGCAG 59.121 50.000 0.00 0.00 31.71 4.24
3647 4258 3.336468 CATCTCAAAGCAGAGCAGTCTT 58.664 45.455 0.00 0.00 35.59 3.01
3750 4371 1.065928 CTGGCTACTACTTCCGCCG 59.934 63.158 0.00 0.00 45.36 6.46
3758 4379 1.200948 ACTACTTCCGCCGAGTTGTAC 59.799 52.381 0.00 0.00 32.67 2.90
3783 4404 7.441458 ACTCATCAACTTGTACTTTCAACCTAC 59.559 37.037 0.00 0.00 0.00 3.18
3784 4405 7.506114 TCATCAACTTGTACTTTCAACCTACT 58.494 34.615 0.00 0.00 0.00 2.57
3785 4406 8.644216 TCATCAACTTGTACTTTCAACCTACTA 58.356 33.333 0.00 0.00 0.00 1.82
3786 4407 8.926710 CATCAACTTGTACTTTCAACCTACTAG 58.073 37.037 0.00 0.00 0.00 2.57
3808 4429 3.404141 AACACCCGTGCGTTGCAAC 62.404 57.895 19.89 19.89 41.47 4.17
3825 4446 2.748465 GCAACGGGGCCATATTAACTCT 60.748 50.000 4.39 0.00 0.00 3.24
3830 4451 4.283722 ACGGGGCCATATTAACTCTAAGAG 59.716 45.833 4.39 0.00 35.52 2.85
4045 4666 4.920640 ACGAGATGTAGATGTAACCTGG 57.079 45.455 0.00 0.00 0.00 4.45
4178 5020 1.183549 CTGCTACCACGGACCTAAGT 58.816 55.000 0.00 0.00 0.00 2.24
4182 5024 3.770933 TGCTACCACGGACCTAAGTAAAT 59.229 43.478 0.00 0.00 0.00 1.40
4188 5030 6.243148 ACCACGGACCTAAGTAAATCAAAAT 58.757 36.000 0.00 0.00 0.00 1.82
4306 5299 3.716601 ACAATTTTCAGCGACAAAAGGG 58.283 40.909 0.00 0.00 0.00 3.95
4379 5372 7.905126 TGTTATATTAACACAAGTGCAGATCG 58.095 34.615 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.825151 TGTTGACTCAATGTGGTAAATGTGA 59.175 36.000 0.00 0.00 0.00 3.58
3 4 8.592105 AATTTGTTGACTCAATGTGGTAAATG 57.408 30.769 0.00 0.00 0.00 2.32
11 12 9.787532 CCGAATTATAATTTGTTGACTCAATGT 57.212 29.630 19.65 0.00 0.00 2.71
14 15 8.673711 CCTCCGAATTATAATTTGTTGACTCAA 58.326 33.333 19.65 0.00 0.00 3.02
15 16 7.827236 ACCTCCGAATTATAATTTGTTGACTCA 59.173 33.333 19.65 0.31 0.00 3.41
16 17 8.209917 ACCTCCGAATTATAATTTGTTGACTC 57.790 34.615 19.65 2.98 0.00 3.36
18 19 7.981142 TGACCTCCGAATTATAATTTGTTGAC 58.019 34.615 19.65 10.83 0.00 3.18
19 20 8.746052 ATGACCTCCGAATTATAATTTGTTGA 57.254 30.769 19.65 12.05 0.00 3.18
26 27 9.618890 CCATGATTATGACCTCCGAATTATAAT 57.381 33.333 0.00 0.00 36.36 1.28
27 28 8.602424 ACCATGATTATGACCTCCGAATTATAA 58.398 33.333 0.00 0.00 36.36 0.98
28 29 8.040727 CACCATGATTATGACCTCCGAATTATA 58.959 37.037 0.00 0.00 36.36 0.98
31 32 5.065914 CACCATGATTATGACCTCCGAATT 58.934 41.667 0.00 0.00 36.36 2.17
32 33 4.347876 TCACCATGATTATGACCTCCGAAT 59.652 41.667 0.00 0.00 36.36 3.34
33 34 3.709141 TCACCATGATTATGACCTCCGAA 59.291 43.478 0.00 0.00 36.36 4.30
34 35 3.304829 TCACCATGATTATGACCTCCGA 58.695 45.455 0.00 0.00 36.36 4.55
35 36 3.751479 TCACCATGATTATGACCTCCG 57.249 47.619 0.00 0.00 36.36 4.63
36 37 4.763793 CCAATCACCATGATTATGACCTCC 59.236 45.833 3.81 0.00 44.60 4.30
37 38 4.217118 GCCAATCACCATGATTATGACCTC 59.783 45.833 3.81 0.00 44.60 3.85
38 39 4.147321 GCCAATCACCATGATTATGACCT 58.853 43.478 3.81 0.00 44.60 3.85
39 40 3.890756 TGCCAATCACCATGATTATGACC 59.109 43.478 3.81 0.00 44.60 4.02
40 41 5.010314 ACATGCCAATCACCATGATTATGAC 59.990 40.000 15.04 3.88 44.60 3.06
41 42 5.010213 CACATGCCAATCACCATGATTATGA 59.990 40.000 15.04 0.00 44.60 2.15
42 43 5.221362 ACACATGCCAATCACCATGATTATG 60.221 40.000 3.81 7.29 44.60 1.90
44 45 4.098196 CACACATGCCAATCACCATGATTA 59.902 41.667 3.81 0.00 44.60 1.75
47 48 1.819903 CACACATGCCAATCACCATGA 59.180 47.619 7.53 0.00 40.92 3.07
48 49 1.819903 TCACACATGCCAATCACCATG 59.180 47.619 0.00 0.00 43.34 3.66
49 50 2.219080 TCACACATGCCAATCACCAT 57.781 45.000 0.00 0.00 0.00 3.55
50 51 1.612950 GTTCACACATGCCAATCACCA 59.387 47.619 0.00 0.00 0.00 4.17
51 52 1.401409 CGTTCACACATGCCAATCACC 60.401 52.381 0.00 0.00 0.00 4.02
53 54 1.889545 TCGTTCACACATGCCAATCA 58.110 45.000 0.00 0.00 0.00 2.57
54 55 2.979813 GTTTCGTTCACACATGCCAATC 59.020 45.455 0.00 0.00 0.00 2.67
55 56 2.604373 CGTTTCGTTCACACATGCCAAT 60.604 45.455 0.00 0.00 0.00 3.16
56 57 1.268285 CGTTTCGTTCACACATGCCAA 60.268 47.619 0.00 0.00 0.00 4.52
59 60 0.584396 TCCGTTTCGTTCACACATGC 59.416 50.000 0.00 0.00 0.00 4.06
60 61 3.430556 TGTATCCGTTTCGTTCACACATG 59.569 43.478 0.00 0.00 0.00 3.21
61 62 3.655486 TGTATCCGTTTCGTTCACACAT 58.345 40.909 0.00 0.00 0.00 3.21
62 63 3.095102 TGTATCCGTTTCGTTCACACA 57.905 42.857 0.00 0.00 0.00 3.72
63 64 5.766702 TTATGTATCCGTTTCGTTCACAC 57.233 39.130 0.00 0.00 0.00 3.82
64 65 5.927689 ACTTTATGTATCCGTTTCGTTCACA 59.072 36.000 0.00 0.00 0.00 3.58
65 66 6.399204 ACTTTATGTATCCGTTTCGTTCAC 57.601 37.500 0.00 0.00 0.00 3.18
66 67 6.619018 GCAACTTTATGTATCCGTTTCGTTCA 60.619 38.462 0.00 0.00 0.00 3.18
67 68 5.731263 GCAACTTTATGTATCCGTTTCGTTC 59.269 40.000 0.00 0.00 0.00 3.95
69 70 4.201647 CGCAACTTTATGTATCCGTTTCGT 60.202 41.667 0.00 0.00 0.00 3.85
70 71 4.201647 ACGCAACTTTATGTATCCGTTTCG 60.202 41.667 0.00 0.00 32.22 3.46
71 72 5.163933 TGACGCAACTTTATGTATCCGTTTC 60.164 40.000 0.00 0.00 0.00 2.78
72 73 4.691685 TGACGCAACTTTATGTATCCGTTT 59.308 37.500 0.00 0.00 0.00 3.60
74 75 3.852286 TGACGCAACTTTATGTATCCGT 58.148 40.909 0.00 0.00 0.00 4.69
75 76 5.403897 AATGACGCAACTTTATGTATCCG 57.596 39.130 0.00 0.00 0.00 4.18
76 77 8.556194 TGATAAATGACGCAACTTTATGTATCC 58.444 33.333 0.00 0.00 0.00 2.59
77 78 9.929722 TTGATAAATGACGCAACTTTATGTATC 57.070 29.630 0.00 0.00 0.00 2.24
89 90 8.867935 CCACAAAAATAATTGATAAATGACGCA 58.132 29.630 0.00 0.00 34.38 5.24
91 92 8.327429 GCCCACAAAAATAATTGATAAATGACG 58.673 33.333 0.00 0.00 34.38 4.35
92 93 8.327429 CGCCCACAAAAATAATTGATAAATGAC 58.673 33.333 0.00 0.00 34.38 3.06
93 94 8.037758 ACGCCCACAAAAATAATTGATAAATGA 58.962 29.630 0.00 0.00 34.38 2.57
95 96 7.821846 ACACGCCCACAAAAATAATTGATAAAT 59.178 29.630 0.00 0.00 34.38 1.40
96 97 7.155328 ACACGCCCACAAAAATAATTGATAAA 58.845 30.769 0.00 0.00 34.38 1.40
98 99 6.274157 ACACGCCCACAAAAATAATTGATA 57.726 33.333 0.00 0.00 34.38 2.15
99 100 5.146010 ACACGCCCACAAAAATAATTGAT 57.854 34.783 0.00 0.00 34.38 2.57
100 101 4.592485 ACACGCCCACAAAAATAATTGA 57.408 36.364 0.00 0.00 34.38 2.57
101 102 5.665381 AAACACGCCCACAAAAATAATTG 57.335 34.783 0.00 0.00 36.37 2.32
102 103 6.685527 AAAAACACGCCCACAAAAATAATT 57.314 29.167 0.00 0.00 0.00 1.40
157 158 7.384932 GCCATGCTTTTTAAGTAGATGTTTGTT 59.615 33.333 0.00 0.00 0.00 2.83
158 159 6.868339 GCCATGCTTTTTAAGTAGATGTTTGT 59.132 34.615 0.00 0.00 0.00 2.83
159 160 6.867816 TGCCATGCTTTTTAAGTAGATGTTTG 59.132 34.615 0.00 0.00 0.00 2.93
160 161 6.991938 TGCCATGCTTTTTAAGTAGATGTTT 58.008 32.000 0.00 0.00 0.00 2.83
161 162 6.588719 TGCCATGCTTTTTAAGTAGATGTT 57.411 33.333 0.00 0.00 0.00 2.71
162 163 6.588719 TTGCCATGCTTTTTAAGTAGATGT 57.411 33.333 0.00 0.00 0.00 3.06
163 164 7.259882 TCATTGCCATGCTTTTTAAGTAGATG 58.740 34.615 0.00 0.00 0.00 2.90
164 165 7.408756 TCATTGCCATGCTTTTTAAGTAGAT 57.591 32.000 0.00 0.00 0.00 1.98
165 166 6.832520 TCATTGCCATGCTTTTTAAGTAGA 57.167 33.333 0.00 0.00 0.00 2.59
166 167 6.867816 TGTTCATTGCCATGCTTTTTAAGTAG 59.132 34.615 0.00 0.00 0.00 2.57
168 169 5.609423 TGTTCATTGCCATGCTTTTTAAGT 58.391 33.333 0.00 0.00 0.00 2.24
169 170 6.539324 CATGTTCATTGCCATGCTTTTTAAG 58.461 36.000 0.00 0.00 32.80 1.85
170 171 6.483385 CATGTTCATTGCCATGCTTTTTAA 57.517 33.333 0.00 0.00 32.80 1.52
178 179 4.142337 TGAGTAAGCATGTTCATTGCCATG 60.142 41.667 10.19 10.19 41.06 3.66
179 180 4.018490 TGAGTAAGCATGTTCATTGCCAT 58.982 39.130 0.00 0.00 41.06 4.40
181 182 4.025015 CTGAGTAAGCATGTTCATTGCC 57.975 45.455 0.00 0.00 41.06 4.52
191 192 9.542809 GTCCGTATTGACTAGCTGAGTAAGCAT 62.543 44.444 1.29 0.00 42.15 3.79
192 193 8.330701 GTCCGTATTGACTAGCTGAGTAAGCA 62.331 46.154 1.29 0.00 42.15 3.91
193 194 6.012914 GTCCGTATTGACTAGCTGAGTAAGC 61.013 48.000 0.00 0.00 39.06 3.09
194 195 5.297278 AGTCCGTATTGACTAGCTGAGTAAG 59.703 44.000 0.00 0.00 43.65 2.34
196 197 4.778579 AGTCCGTATTGACTAGCTGAGTA 58.221 43.478 0.00 0.00 43.65 2.59
197 198 3.622630 AGTCCGTATTGACTAGCTGAGT 58.377 45.455 0.00 0.00 43.65 3.41
198 199 5.066117 TGTTAGTCCGTATTGACTAGCTGAG 59.934 44.000 13.63 0.00 45.77 3.35
200 201 5.244785 TGTTAGTCCGTATTGACTAGCTG 57.755 43.478 13.63 0.00 45.77 4.24
201 202 5.360144 ACATGTTAGTCCGTATTGACTAGCT 59.640 40.000 13.63 0.00 45.77 3.32
202 203 5.589192 ACATGTTAGTCCGTATTGACTAGC 58.411 41.667 0.00 7.76 45.77 3.42
203 204 9.745880 AATAACATGTTAGTCCGTATTGACTAG 57.254 33.333 22.03 0.00 45.77 2.57
204 205 9.740239 GAATAACATGTTAGTCCGTATTGACTA 57.260 33.333 27.62 2.37 43.65 2.59
205 206 8.255206 TGAATAACATGTTAGTCCGTATTGACT 58.745 33.333 31.98 8.27 46.90 3.41
206 207 8.415192 TGAATAACATGTTAGTCCGTATTGAC 57.585 34.615 31.98 13.61 38.82 3.18
207 208 9.256477 GATGAATAACATGTTAGTCCGTATTGA 57.744 33.333 31.98 18.38 38.82 2.57
208 209 9.261180 AGATGAATAACATGTTAGTCCGTATTG 57.739 33.333 31.98 0.00 38.82 1.90
211 212 8.573885 CCTAGATGAATAACATGTTAGTCCGTA 58.426 37.037 31.98 22.11 38.82 4.02
212 213 7.287005 TCCTAGATGAATAACATGTTAGTCCGT 59.713 37.037 31.98 24.00 38.82 4.69
213 214 7.658261 TCCTAGATGAATAACATGTTAGTCCG 58.342 38.462 31.98 19.21 38.82 4.79
214 215 9.262358 GTTCCTAGATGAATAACATGTTAGTCC 57.738 37.037 31.98 21.95 38.82 3.85
227 228 9.829507 CTTTGTCTATGAAGTTCCTAGATGAAT 57.170 33.333 17.56 0.00 28.87 2.57
229 230 7.093333 TGCTTTGTCTATGAAGTTCCTAGATGA 60.093 37.037 17.56 9.18 28.87 2.92
230 231 7.010923 GTGCTTTGTCTATGAAGTTCCTAGATG 59.989 40.741 17.56 11.11 28.87 2.90
231 232 7.044798 GTGCTTTGTCTATGAAGTTCCTAGAT 58.955 38.462 17.56 0.79 28.87 1.98
232 233 6.014584 TGTGCTTTGTCTATGAAGTTCCTAGA 60.015 38.462 12.36 12.36 0.00 2.43
233 234 6.166279 TGTGCTTTGTCTATGAAGTTCCTAG 58.834 40.000 8.47 8.47 0.00 3.02
235 236 4.973168 TGTGCTTTGTCTATGAAGTTCCT 58.027 39.130 0.00 0.00 0.00 3.36
238 239 5.413833 CCTGATGTGCTTTGTCTATGAAGTT 59.586 40.000 0.00 0.00 0.00 2.66
239 240 4.940046 CCTGATGTGCTTTGTCTATGAAGT 59.060 41.667 0.00 0.00 0.00 3.01
240 241 5.181009 TCCTGATGTGCTTTGTCTATGAAG 58.819 41.667 0.00 0.00 0.00 3.02
241 242 5.164620 TCCTGATGTGCTTTGTCTATGAA 57.835 39.130 0.00 0.00 0.00 2.57
242 243 4.383444 CCTCCTGATGTGCTTTGTCTATGA 60.383 45.833 0.00 0.00 0.00 2.15
243 244 3.875727 CCTCCTGATGTGCTTTGTCTATG 59.124 47.826 0.00 0.00 0.00 2.23
244 245 3.776969 TCCTCCTGATGTGCTTTGTCTAT 59.223 43.478 0.00 0.00 0.00 1.98
246 247 1.980765 TCCTCCTGATGTGCTTTGTCT 59.019 47.619 0.00 0.00 0.00 3.41
247 248 2.479566 TCCTCCTGATGTGCTTTGTC 57.520 50.000 0.00 0.00 0.00 3.18
249 250 3.822735 TCTTTTCCTCCTGATGTGCTTTG 59.177 43.478 0.00 0.00 0.00 2.77
250 251 4.077822 CTCTTTTCCTCCTGATGTGCTTT 58.922 43.478 0.00 0.00 0.00 3.51
251 252 3.328931 TCTCTTTTCCTCCTGATGTGCTT 59.671 43.478 0.00 0.00 0.00 3.91
252 253 2.909006 TCTCTTTTCCTCCTGATGTGCT 59.091 45.455 0.00 0.00 0.00 4.40
253 254 3.340814 TCTCTTTTCCTCCTGATGTGC 57.659 47.619 0.00 0.00 0.00 4.57
254 255 6.432162 TGATTTTCTCTTTTCCTCCTGATGTG 59.568 38.462 0.00 0.00 0.00 3.21
255 256 6.546484 TGATTTTCTCTTTTCCTCCTGATGT 58.454 36.000 0.00 0.00 0.00 3.06
256 257 7.458409 TTGATTTTCTCTTTTCCTCCTGATG 57.542 36.000 0.00 0.00 0.00 3.07
257 258 7.123847 CCATTGATTTTCTCTTTTCCTCCTGAT 59.876 37.037 0.00 0.00 0.00 2.90
258 259 6.435277 CCATTGATTTTCTCTTTTCCTCCTGA 59.565 38.462 0.00 0.00 0.00 3.86
259 260 6.210185 ACCATTGATTTTCTCTTTTCCTCCTG 59.790 38.462 0.00 0.00 0.00 3.86
261 262 6.015095 ACACCATTGATTTTCTCTTTTCCTCC 60.015 38.462 0.00 0.00 0.00 4.30
262 263 6.986250 ACACCATTGATTTTCTCTTTTCCTC 58.014 36.000 0.00 0.00 0.00 3.71
265 266 6.642540 GTGGACACCATTGATTTTCTCTTTTC 59.357 38.462 0.00 0.00 35.28 2.29
266 267 6.515832 GTGGACACCATTGATTTTCTCTTTT 58.484 36.000 0.00 0.00 35.28 2.27
267 268 6.089249 GTGGACACCATTGATTTTCTCTTT 57.911 37.500 0.00 0.00 35.28 2.52
300 301 0.532573 TGGAGATTGCTCAGGACGAC 59.467 55.000 0.00 0.00 43.14 4.34
302 303 2.099141 TTTGGAGATTGCTCAGGACG 57.901 50.000 0.00 0.00 43.14 4.79
323 324 4.213270 CAGACACGGTTGCTTTCTTGAATA 59.787 41.667 0.00 0.00 0.00 1.75
339 340 3.254657 TGCCCTTTTAAAATCCAGACACG 59.745 43.478 0.09 0.00 0.00 4.49
364 365 3.989817 CGAGTCATCATGAGTTGTGACAA 59.010 43.478 22.75 0.00 38.12 3.18
372 373 4.082026 TCACATCAACGAGTCATCATGAGT 60.082 41.667 0.09 0.00 31.62 3.41
394 395 5.581126 TTACAAGGATGGTGCAATTCATC 57.419 39.130 14.12 14.12 39.08 2.92
415 416 9.561069 AGATTCGGACAAACTATGCTTAATATT 57.439 29.630 0.00 0.00 0.00 1.28
425 426 4.631813 GCAACTCAGATTCGGACAAACTAT 59.368 41.667 0.00 0.00 0.00 2.12
445 446 7.434897 GTCATGTTAAAACAAATCACTGAGCAA 59.565 33.333 0.00 0.00 43.03 3.91
449 450 5.912396 GCGTCATGTTAAAACAAATCACTGA 59.088 36.000 0.00 0.00 43.03 3.41
452 453 5.219633 AGGCGTCATGTTAAAACAAATCAC 58.780 37.500 0.00 0.00 43.03 3.06
458 459 7.041030 TGAGATAAAAGGCGTCATGTTAAAACA 60.041 33.333 0.00 0.00 44.06 2.83
471 472 6.182039 TGTGAAAAGATGAGATAAAAGGCG 57.818 37.500 0.00 0.00 0.00 5.52
480 481 8.542926 TCCTATCTTTCATGTGAAAAGATGAGA 58.457 33.333 22.11 17.19 42.72 3.27
503 504 7.704727 ACAGCTCAGGTCTATTATATACTCCT 58.295 38.462 0.00 0.00 0.00 3.69
504 505 7.948034 ACAGCTCAGGTCTATTATATACTCC 57.052 40.000 0.00 0.00 0.00 3.85
519 520 4.458295 ACTTCATGAAATCAACAGCTCAGG 59.542 41.667 9.88 0.00 0.00 3.86
526 527 5.009631 CCCCACTACTTCATGAAATCAACA 58.990 41.667 9.88 0.00 0.00 3.33
538 539 4.041321 AGAGTTAACCAACCCCACTACTTC 59.959 45.833 0.88 0.00 35.05 3.01
633 634 0.738389 GCCGGGTTTACACATCATGG 59.262 55.000 2.18 0.00 0.00 3.66
638 639 0.963225 GGTTTGCCGGGTTTACACAT 59.037 50.000 2.18 0.00 0.00 3.21
641 642 0.537828 GGAGGTTTGCCGGGTTTACA 60.538 55.000 2.18 0.00 40.50 2.41
642 643 1.246056 GGGAGGTTTGCCGGGTTTAC 61.246 60.000 2.18 0.00 40.50 2.01
643 644 1.075305 GGGAGGTTTGCCGGGTTTA 59.925 57.895 2.18 0.00 40.50 2.01
644 645 2.203582 GGGAGGTTTGCCGGGTTT 60.204 61.111 2.18 0.00 40.50 3.27
645 646 4.295199 GGGGAGGTTTGCCGGGTT 62.295 66.667 2.18 0.00 40.50 4.11
647 648 4.740822 CAGGGGAGGTTTGCCGGG 62.741 72.222 2.18 0.00 40.50 5.73
648 649 2.706952 TTTCAGGGGAGGTTTGCCGG 62.707 60.000 0.00 0.00 40.50 6.13
651 652 0.540597 AGCTTTCAGGGGAGGTTTGC 60.541 55.000 0.00 0.00 0.00 3.68
652 653 1.251251 CAGCTTTCAGGGGAGGTTTG 58.749 55.000 0.00 0.00 0.00 2.93
653 654 0.113190 CCAGCTTTCAGGGGAGGTTT 59.887 55.000 0.00 0.00 0.00 3.27
654 655 0.772124 TCCAGCTTTCAGGGGAGGTT 60.772 55.000 0.00 0.00 0.00 3.50
671 925 7.309920 TCGATATTTTTGGCTTAAGTGTTTCC 58.690 34.615 4.02 0.00 0.00 3.13
723 1239 6.121776 TCAGGGTCTCATTTTGTTAAGCTA 57.878 37.500 0.00 0.00 0.00 3.32
752 1268 0.904649 AAGCGACATCATGTGGGAGA 59.095 50.000 0.00 0.00 0.00 3.71
795 1333 7.379750 AGTTTGTCTTTCACTCACTATCTACC 58.620 38.462 0.00 0.00 0.00 3.18
796 1334 8.819643 AAGTTTGTCTTTCACTCACTATCTAC 57.180 34.615 0.00 0.00 31.57 2.59
924 1464 1.035932 GCTGCACTAGTACGGGGAGA 61.036 60.000 4.07 0.00 0.00 3.71
1004 1544 2.663188 GATCAGGCTTAGCGGCGG 60.663 66.667 9.78 0.00 44.22 6.13
1076 1616 2.592574 ACGTCTCGTCGGTGGTCA 60.593 61.111 0.00 0.00 33.69 4.02
1101 1641 0.601558 GGTAGTTGCGGACTGTCTCA 59.398 55.000 7.85 3.68 39.48 3.27
1105 1645 2.048503 GCGGTAGTTGCGGACTGT 60.049 61.111 3.04 0.00 39.48 3.55
1131 1671 1.002430 CCTATGACGTATGGCATGGCT 59.998 52.381 21.08 8.52 0.00 4.75
1178 1718 5.581126 TGTTTCAAGCAAAACAGACAGAT 57.419 34.783 7.68 0.00 42.58 2.90
1191 1731 3.326747 ACATCGTCCTACTGTTTCAAGC 58.673 45.455 0.00 0.00 0.00 4.01
1204 1744 4.857588 CAGTGTGTAGTAAGAACATCGTCC 59.142 45.833 0.00 0.00 0.00 4.79
1209 1749 4.617253 TGGCAGTGTGTAGTAAGAACAT 57.383 40.909 0.00 0.00 0.00 2.71
1210 1750 4.617253 ATGGCAGTGTGTAGTAAGAACA 57.383 40.909 0.00 0.00 0.00 3.18
1211 1751 4.561606 CGTATGGCAGTGTGTAGTAAGAAC 59.438 45.833 0.00 0.00 0.00 3.01
1214 1754 4.103357 GACGTATGGCAGTGTGTAGTAAG 58.897 47.826 0.00 0.00 0.00 2.34
1217 1757 1.890489 TGACGTATGGCAGTGTGTAGT 59.110 47.619 0.00 0.00 0.00 2.73
1219 1759 4.722361 TTATGACGTATGGCAGTGTGTA 57.278 40.909 0.00 0.00 0.00 2.90
1221 1761 5.484173 AAATTATGACGTATGGCAGTGTG 57.516 39.130 0.00 0.00 0.00 3.82
1222 1762 7.602644 CCTATAAATTATGACGTATGGCAGTGT 59.397 37.037 0.00 0.00 0.00 3.55
1223 1763 7.413000 GCCTATAAATTATGACGTATGGCAGTG 60.413 40.741 0.00 0.00 35.94 3.66
1225 1765 6.593770 TGCCTATAAATTATGACGTATGGCAG 59.406 38.462 0.00 0.00 40.20 4.85
1227 1767 6.978343 TGCCTATAAATTATGACGTATGGC 57.022 37.500 0.00 0.00 36.38 4.40
1233 1773 9.371136 AGATGTACATGCCTATAAATTATGACG 57.629 33.333 14.43 0.00 0.00 4.35
1240 1780 8.207350 ACAGGTAGATGTACATGCCTATAAAT 57.793 34.615 14.43 0.44 43.39 1.40
1242 1782 7.441836 CAACAGGTAGATGTACATGCCTATAA 58.558 38.462 14.43 0.00 43.39 0.98
1249 1789 6.500684 AAAAGCAACAGGTAGATGTACATG 57.499 37.500 14.43 12.58 44.80 3.21
1250 1790 6.714810 TGAAAAAGCAACAGGTAGATGTACAT 59.285 34.615 8.43 8.43 31.70 2.29
1251 1791 6.058833 TGAAAAAGCAACAGGTAGATGTACA 58.941 36.000 0.00 0.00 31.70 2.90
1252 1792 6.554334 TGAAAAAGCAACAGGTAGATGTAC 57.446 37.500 0.00 0.00 31.70 2.90
1254 1794 5.831997 GTTGAAAAAGCAACAGGTAGATGT 58.168 37.500 0.00 0.00 45.65 3.06
1264 1804 8.365399 AGCCTTAAAATAGTTGAAAAAGCAAC 57.635 30.769 0.00 0.00 46.47 4.17
1265 1805 8.956533 AAGCCTTAAAATAGTTGAAAAAGCAA 57.043 26.923 0.00 0.00 0.00 3.91
1266 1806 8.421002 AGAAGCCTTAAAATAGTTGAAAAAGCA 58.579 29.630 0.00 0.00 0.00 3.91
1267 1807 8.818141 AGAAGCCTTAAAATAGTTGAAAAAGC 57.182 30.769 0.00 0.00 0.00 3.51
1271 1811 9.787435 TGTCTAGAAGCCTTAAAATAGTTGAAA 57.213 29.630 0.00 0.00 0.00 2.69
1272 1812 9.959721 ATGTCTAGAAGCCTTAAAATAGTTGAA 57.040 29.630 0.00 0.00 0.00 2.69
1274 1814 9.383519 TCATGTCTAGAAGCCTTAAAATAGTTG 57.616 33.333 0.00 0.00 0.00 3.16
1300 1840 8.240682 GCAGCCCGGAATTTTTAAAAATAAAAT 58.759 29.630 23.01 10.26 37.62 1.82
1302 1842 6.710744 TGCAGCCCGGAATTTTTAAAAATAAA 59.289 30.769 23.01 0.00 37.62 1.40
1303 1843 6.231211 TGCAGCCCGGAATTTTTAAAAATAA 58.769 32.000 23.01 0.09 37.62 1.40
1304 1844 5.794894 TGCAGCCCGGAATTTTTAAAAATA 58.205 33.333 23.01 0.82 37.62 1.40
1305 1845 4.646572 TGCAGCCCGGAATTTTTAAAAAT 58.353 34.783 18.40 18.40 40.15 1.82
1306 1846 4.073293 TGCAGCCCGGAATTTTTAAAAA 57.927 36.364 15.38 15.38 0.00 1.94
1308 1848 3.971245 ATGCAGCCCGGAATTTTTAAA 57.029 38.095 0.73 0.00 0.00 1.52
1309 1849 3.259374 TCAATGCAGCCCGGAATTTTTAA 59.741 39.130 0.73 0.00 0.00 1.52
1310 1850 2.828520 TCAATGCAGCCCGGAATTTTTA 59.171 40.909 0.73 0.00 0.00 1.52
1311 1851 1.622811 TCAATGCAGCCCGGAATTTTT 59.377 42.857 0.73 0.00 0.00 1.94
1312 1852 1.205417 CTCAATGCAGCCCGGAATTTT 59.795 47.619 0.73 0.00 0.00 1.82
1313 1853 0.819582 CTCAATGCAGCCCGGAATTT 59.180 50.000 0.73 0.00 0.00 1.82
1314 1854 1.669999 GCTCAATGCAGCCCGGAATT 61.670 55.000 0.73 0.00 42.31 2.17
1316 1856 2.751436 GCTCAATGCAGCCCGGAA 60.751 61.111 0.73 0.00 42.31 4.30
1322 1862 1.453762 GGATCCTGGCTCAATGCAGC 61.454 60.000 3.84 0.00 45.15 5.25
1323 1863 0.106868 TGGATCCTGGCTCAATGCAG 60.107 55.000 14.23 0.00 45.15 4.41
1324 1864 0.332293 TTGGATCCTGGCTCAATGCA 59.668 50.000 14.23 0.00 45.15 3.96
1325 1865 1.477553 TTTGGATCCTGGCTCAATGC 58.522 50.000 14.23 0.00 41.94 3.56
1326 1866 2.159142 GCTTTTGGATCCTGGCTCAATG 60.159 50.000 14.23 0.72 0.00 2.82
1327 1867 2.105766 GCTTTTGGATCCTGGCTCAAT 58.894 47.619 14.23 0.00 0.00 2.57
1328 1868 1.076024 AGCTTTTGGATCCTGGCTCAA 59.924 47.619 14.23 0.00 0.00 3.02
1329 1869 0.700564 AGCTTTTGGATCCTGGCTCA 59.299 50.000 14.23 0.00 0.00 4.26
1330 1870 1.844687 AAGCTTTTGGATCCTGGCTC 58.155 50.000 14.23 0.00 0.00 4.70
1331 1871 2.301009 CAAAAGCTTTTGGATCCTGGCT 59.699 45.455 34.51 13.41 42.81 4.75
1342 1882 8.353423 ACTCATATACCATGACAAAAGCTTTT 57.647 30.769 18.74 18.74 0.00 2.27
1343 1883 7.944729 ACTCATATACCATGACAAAAGCTTT 57.055 32.000 5.69 5.69 0.00 3.51
1345 1885 7.495934 GTGTACTCATATACCATGACAAAAGCT 59.504 37.037 0.00 0.00 0.00 3.74
1346 1886 7.516785 CGTGTACTCATATACCATGACAAAAGC 60.517 40.741 0.00 0.00 0.00 3.51
1347 1887 7.704899 TCGTGTACTCATATACCATGACAAAAG 59.295 37.037 0.00 0.00 0.00 2.27
1348 1888 7.548967 TCGTGTACTCATATACCATGACAAAA 58.451 34.615 0.00 0.00 0.00 2.44
1349 1889 7.102847 TCGTGTACTCATATACCATGACAAA 57.897 36.000 0.00 0.00 0.00 2.83
1350 1890 6.702716 TCGTGTACTCATATACCATGACAA 57.297 37.500 0.00 0.00 0.00 3.18
1352 1892 6.500910 TGTTCGTGTACTCATATACCATGAC 58.499 40.000 0.00 0.00 0.00 3.06
1354 1894 6.735130 TCTGTTCGTGTACTCATATACCATG 58.265 40.000 0.00 0.00 0.00 3.66
1355 1895 6.954487 TCTGTTCGTGTACTCATATACCAT 57.046 37.500 0.00 0.00 0.00 3.55
1356 1896 6.151480 TGTTCTGTTCGTGTACTCATATACCA 59.849 38.462 0.00 0.00 0.00 3.25
1357 1897 6.558009 TGTTCTGTTCGTGTACTCATATACC 58.442 40.000 0.00 0.00 0.00 2.73
1358 1898 8.630278 ATTGTTCTGTTCGTGTACTCATATAC 57.370 34.615 0.00 0.00 0.00 1.47
1359 1899 9.647797 AAATTGTTCTGTTCGTGTACTCATATA 57.352 29.630 0.00 0.00 0.00 0.86
1360 1900 8.547967 AAATTGTTCTGTTCGTGTACTCATAT 57.452 30.769 0.00 0.00 0.00 1.78
1380 1920 2.741612 TGCTTGAACTTGCCGAAATTG 58.258 42.857 0.00 0.00 0.00 2.32
1381 1921 3.181476 ACTTGCTTGAACTTGCCGAAATT 60.181 39.130 0.00 0.00 0.00 1.82
1468 2011 0.108615 AGTCCACGGATTCTTGCGAG 60.109 55.000 0.00 0.00 39.29 5.03
1470 2013 0.443869 CAAGTCCACGGATTCTTGCG 59.556 55.000 4.12 0.00 43.08 4.85
1472 2015 3.045601 AGTCAAGTCCACGGATTCTTG 57.954 47.619 9.21 9.21 38.69 3.02
1485 2028 7.066142 AGGAGACATGATACAGATAGTCAAGT 58.934 38.462 0.00 0.00 0.00 3.16
1491 2034 5.703130 TGACGAGGAGACATGATACAGATAG 59.297 44.000 0.00 0.00 0.00 2.08
1493 2036 4.464947 TGACGAGGAGACATGATACAGAT 58.535 43.478 0.00 0.00 0.00 2.90
1509 2052 1.025812 AGGTCTAGCCGAATGACGAG 58.974 55.000 0.00 0.00 45.77 4.18
1533 2078 1.463056 CATGACAAAAGACGCGCCTTA 59.537 47.619 8.45 0.00 0.00 2.69
1540 2085 7.065216 ACAATGACTATCATGACAAAAGACG 57.935 36.000 0.00 0.00 37.15 4.18
1541 2086 8.607459 CCTACAATGACTATCATGACAAAAGAC 58.393 37.037 0.00 0.00 37.15 3.01
1542 2087 8.539544 TCCTACAATGACTATCATGACAAAAGA 58.460 33.333 0.00 0.00 37.15 2.52
1543 2088 8.722480 TCCTACAATGACTATCATGACAAAAG 57.278 34.615 0.00 0.00 37.15 2.27
1564 2109 7.520798 ACCAATGAGATTAGCAATCAATCCTA 58.479 34.615 10.26 0.00 40.42 2.94
1565 2110 6.371278 ACCAATGAGATTAGCAATCAATCCT 58.629 36.000 10.26 0.00 40.42 3.24
1566 2111 6.645790 ACCAATGAGATTAGCAATCAATCC 57.354 37.500 10.26 0.00 40.42 3.01
1568 2113 9.976511 CAATAACCAATGAGATTAGCAATCAAT 57.023 29.630 10.26 3.05 40.42 2.57
1569 2114 8.970020 ACAATAACCAATGAGATTAGCAATCAA 58.030 29.630 10.26 1.28 40.42 2.57
1570 2115 8.523915 ACAATAACCAATGAGATTAGCAATCA 57.476 30.769 10.26 0.00 40.42 2.57
1571 2116 9.241317 CAACAATAACCAATGAGATTAGCAATC 57.759 33.333 0.00 0.00 38.20 2.67
1572 2117 8.752187 ACAACAATAACCAATGAGATTAGCAAT 58.248 29.630 0.00 0.00 0.00 3.56
1573 2118 8.121305 ACAACAATAACCAATGAGATTAGCAA 57.879 30.769 0.00 0.00 0.00 3.91
1574 2119 7.701539 ACAACAATAACCAATGAGATTAGCA 57.298 32.000 0.00 0.00 0.00 3.49
1575 2120 9.722056 CTTACAACAATAACCAATGAGATTAGC 57.278 33.333 0.00 0.00 0.00 3.09
1586 2131 7.284074 TGTCTTTCCTCTTACAACAATAACCA 58.716 34.615 0.00 0.00 0.00 3.67
1587 2132 7.739498 TGTCTTTCCTCTTACAACAATAACC 57.261 36.000 0.00 0.00 0.00 2.85
1603 2148 8.072567 GTCAATATGCTGATACAATGTCTTTCC 58.927 37.037 0.00 0.00 0.00 3.13
1704 2250 7.849804 ATTCAGCAAAGTTTATCGTACAGAT 57.150 32.000 0.00 0.00 43.19 2.90
1705 2251 7.667043 AATTCAGCAAAGTTTATCGTACAGA 57.333 32.000 0.00 0.00 0.00 3.41
1706 2252 8.440059 TGTAATTCAGCAAAGTTTATCGTACAG 58.560 33.333 0.00 0.00 0.00 2.74
1715 2262 8.129211 GTCACTAGTTGTAATTCAGCAAAGTTT 58.871 33.333 0.00 0.00 0.00 2.66
1718 2265 7.426929 AGTCACTAGTTGTAATTCAGCAAAG 57.573 36.000 0.00 0.00 0.00 2.77
1798 2349 3.256383 TCGAACGTCTCATTCCCTGTAAA 59.744 43.478 0.00 0.00 0.00 2.01
1899 2450 2.789409 AGAAGTTGAGTATGGTGGCC 57.211 50.000 0.00 0.00 0.00 5.36
3273 3847 1.236026 ATAGGTCCACCCTCCCCTCA 61.236 60.000 0.00 0.00 44.81 3.86
3298 3872 2.359850 GATGGCAGCCGTGACCAA 60.360 61.111 12.21 0.00 34.72 3.67
3548 4125 7.973048 TTCCCACATACTCCTATATACCATC 57.027 40.000 0.00 0.00 0.00 3.51
3555 4132 7.310671 GCTTGATCATTCCCACATACTCCTATA 60.311 40.741 0.00 0.00 0.00 1.31
3556 4133 6.521427 GCTTGATCATTCCCACATACTCCTAT 60.521 42.308 0.00 0.00 0.00 2.57
3557 4134 5.221722 GCTTGATCATTCCCACATACTCCTA 60.222 44.000 0.00 0.00 0.00 2.94
3558 4135 4.445448 GCTTGATCATTCCCACATACTCCT 60.445 45.833 0.00 0.00 0.00 3.69
3559 4136 3.817647 GCTTGATCATTCCCACATACTCC 59.182 47.826 0.00 0.00 0.00 3.85
3560 4137 4.454678 TGCTTGATCATTCCCACATACTC 58.545 43.478 0.00 0.00 0.00 2.59
3561 4138 4.508551 TGCTTGATCATTCCCACATACT 57.491 40.909 0.00 0.00 0.00 2.12
3562 4139 4.558095 GCATGCTTGATCATTCCCACATAC 60.558 45.833 11.37 0.00 0.00 2.39
3588 4165 2.637382 ACACTCATACCACACATGTCCA 59.363 45.455 0.00 0.00 0.00 4.02
3628 4239 2.632028 AGAAGACTGCTCTGCTTTGAGA 59.368 45.455 6.22 0.00 36.23 3.27
3638 4249 4.934001 TGAATCAACATCAGAAGACTGCTC 59.066 41.667 0.00 0.00 43.17 4.26
3647 4258 2.765122 TGTGCGTGAATCAACATCAGA 58.235 42.857 0.00 0.00 0.00 3.27
3758 4379 6.867662 AGGTTGAAAGTACAAGTTGATGAG 57.132 37.500 10.54 0.00 0.00 2.90
3769 4390 7.598118 GGTGTTCTTCTAGTAGGTTGAAAGTAC 59.402 40.741 0.00 0.00 0.00 2.73
3772 4393 5.932883 GGGTGTTCTTCTAGTAGGTTGAAAG 59.067 44.000 0.00 0.00 0.00 2.62
3774 4395 4.021719 CGGGTGTTCTTCTAGTAGGTTGAA 60.022 45.833 0.00 0.00 0.00 2.69
3783 4404 0.038526 ACGCACGGGTGTTCTTCTAG 60.039 55.000 0.00 0.00 32.83 2.43
3784 4405 0.390124 AACGCACGGGTGTTCTTCTA 59.610 50.000 11.62 0.00 44.03 2.10
3785 4406 1.145377 AACGCACGGGTGTTCTTCT 59.855 52.632 11.62 0.00 44.03 2.85
3786 4407 1.278637 CAACGCACGGGTGTTCTTC 59.721 57.895 14.93 0.00 45.51 2.87
3808 4429 4.283722 ACTCTTAGAGTTAATATGGCCCCG 59.716 45.833 9.37 0.00 40.28 5.73
3825 4446 7.042992 CGCCAATGTCGTAATATTGAACTCTTA 60.043 37.037 0.00 0.00 36.41 2.10
3830 4451 5.195379 GTCGCCAATGTCGTAATATTGAAC 58.805 41.667 0.00 0.00 36.41 3.18
4045 4666 5.041287 GCTTACTGTTTGTTTTGGGAAGAC 58.959 41.667 0.00 0.00 0.00 3.01
4188 5030 8.160765 TCAGACCCTTATTTGTGTTTCATCTTA 58.839 33.333 0.00 0.00 0.00 2.10
4201 5043 7.395617 GGAGTTAAGTTCTCAGACCCTTATTT 58.604 38.462 0.00 0.00 34.04 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.