Multiple sequence alignment - TraesCS2A01G044700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G044700 chr2A 100.000 6643 0 0 1 6643 17614409 17621051 0.000000e+00 12268.0
1 TraesCS2A01G044700 chr2B 94.354 4906 164 52 1714 6578 27708147 27712980 0.000000e+00 7420.0
2 TraesCS2A01G044700 chr2B 92.049 1132 55 13 225 1341 27706999 27708110 0.000000e+00 1559.0
3 TraesCS2A01G044700 chr2B 92.188 64 3 2 6542 6604 38218226 38218288 9.180000e-14 89.8
4 TraesCS2A01G044700 chr2D 95.156 3468 99 24 3145 6589 15588826 15592247 0.000000e+00 5409.0
5 TraesCS2A01G044700 chr2D 91.201 1773 98 19 1714 3473 15587493 15589220 0.000000e+00 2357.0
6 TraesCS2A01G044700 chr2D 95.484 1063 24 8 221 1277 15586368 15587412 0.000000e+00 1676.0
7 TraesCS2A01G044700 chr5D 86.239 109 15 0 6027 6135 510480792 510480684 1.170000e-22 119.0
8 TraesCS2A01G044700 chr5D 89.552 67 5 2 6542 6607 273117883 273117948 4.270000e-12 84.2
9 TraesCS2A01G044700 chr5D 89.583 48 5 0 1 48 169550460 169550507 2.000000e-05 62.1
10 TraesCS2A01G044700 chr5B 93.103 58 4 0 6547 6604 69548106 69548049 1.190000e-12 86.1
11 TraesCS2A01G044700 chr6A 92.982 57 4 0 6547 6603 454654058 454654002 4.270000e-12 84.2
12 TraesCS2A01G044700 chr3D 89.394 66 7 0 6547 6612 435451314 435451249 4.270000e-12 84.2
13 TraesCS2A01G044700 chr3D 87.500 72 6 2 6540 6611 591618640 591618708 5.520000e-11 80.5
14 TraesCS2A01G044700 chr6B 85.897 78 8 3 6041 6117 681320798 681320873 5.520000e-11 80.5
15 TraesCS2A01G044700 chr7A 87.500 72 4 5 6522 6592 506285555 506285488 1.990000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G044700 chr2A 17614409 17621051 6642 False 12268.000000 12268 100.0000 1 6643 1 chr2A.!!$F1 6642
1 TraesCS2A01G044700 chr2B 27706999 27712980 5981 False 4489.500000 7420 93.2015 225 6578 2 chr2B.!!$F2 6353
2 TraesCS2A01G044700 chr2D 15586368 15592247 5879 False 3147.333333 5409 93.9470 221 6589 3 chr2D.!!$F1 6368

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.097325 GACTAGAGCCGTCGACAGTG 59.903 60.0 17.16 4.33 0.00 3.66 F
72 73 0.321387 ACTAGAGCCGTCGACAGTGA 60.321 55.0 17.16 0.00 0.00 3.41 F
73 74 0.375454 CTAGAGCCGTCGACAGTGAG 59.625 60.0 17.16 0.00 0.00 3.51 F
1333 1366 0.388520 GCAAGGCGGTGGCTTTTTAG 60.389 55.0 2.55 0.00 46.16 1.85 F
2294 2337 0.179234 GGAGGAGGCAGGAAGCTTAC 59.821 60.0 0.00 0.00 44.79 2.34 F
4272 4357 0.179023 TGAACTGTGCTCCACATGCA 60.179 50.0 0.00 0.00 43.71 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1286 1319 0.108992 TACCAGAGCGCACGGTTAAG 60.109 55.000 21.25 2.77 34.12 1.85 R
1429 1462 0.243907 CACCGACGACCACAGAATCT 59.756 55.000 0.00 0.00 0.00 2.40 R
1434 1467 0.528924 TATTCCACCGACGACCACAG 59.471 55.000 0.00 0.00 0.00 3.66 R
3061 3104 0.465460 TTCACCTGGTGCTGGTTCAC 60.465 55.000 22.02 0.00 33.44 3.18 R
4275 4360 0.253894 TCACCTCCTCACCATGCATG 59.746 55.000 20.19 20.19 0.00 4.06 R
5723 5808 1.223211 GGCTGCTCCTCCTTTCCTC 59.777 63.158 0.00 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.435410 TCGACGGCGAGCTGACTA 60.435 61.111 10.67 0.00 42.51 2.59
57 58 2.023461 CGACGGCGAGCTGACTAG 59.977 66.667 16.62 0.00 40.82 2.57
58 59 2.461945 CGACGGCGAGCTGACTAGA 61.462 63.158 16.62 0.00 40.82 2.43
59 60 1.353804 GACGGCGAGCTGACTAGAG 59.646 63.158 16.62 0.00 0.00 2.43
60 61 2.025441 CGGCGAGCTGACTAGAGC 59.975 66.667 0.00 0.00 39.46 4.09
61 62 2.415426 GGCGAGCTGACTAGAGCC 59.585 66.667 0.00 0.00 40.08 4.70
62 63 2.025441 GCGAGCTGACTAGAGCCG 59.975 66.667 0.00 3.57 40.08 5.52
63 64 2.766400 GCGAGCTGACTAGAGCCGT 61.766 63.158 0.00 0.00 40.08 5.68
64 65 1.353804 CGAGCTGACTAGAGCCGTC 59.646 63.158 0.00 0.00 40.08 4.79
65 66 1.353804 GAGCTGACTAGAGCCGTCG 59.646 63.158 0.00 0.00 40.08 5.12
66 67 1.078356 AGCTGACTAGAGCCGTCGA 60.078 57.895 0.00 0.00 40.08 4.20
67 68 1.062845 GCTGACTAGAGCCGTCGAC 59.937 63.158 5.18 5.18 34.17 4.20
68 69 1.645704 GCTGACTAGAGCCGTCGACA 61.646 60.000 17.16 0.00 34.17 4.35
69 70 0.375454 CTGACTAGAGCCGTCGACAG 59.625 60.000 17.16 5.18 34.17 3.51
70 71 0.321387 TGACTAGAGCCGTCGACAGT 60.321 55.000 17.16 10.05 34.17 3.55
71 72 0.097325 GACTAGAGCCGTCGACAGTG 59.903 60.000 17.16 4.33 0.00 3.66
72 73 0.321387 ACTAGAGCCGTCGACAGTGA 60.321 55.000 17.16 0.00 0.00 3.41
73 74 0.375454 CTAGAGCCGTCGACAGTGAG 59.625 60.000 17.16 0.00 0.00 3.51
74 75 1.645704 TAGAGCCGTCGACAGTGAGC 61.646 60.000 17.16 9.64 0.00 4.26
75 76 3.973267 GAGCCGTCGACAGTGAGCC 62.973 68.421 17.16 1.28 0.00 4.70
77 78 4.778415 CCGTCGACAGTGAGCCGG 62.778 72.222 17.16 4.26 0.00 6.13
78 79 4.039357 CGTCGACAGTGAGCCGGT 62.039 66.667 17.16 0.00 0.00 5.28
79 80 2.430921 GTCGACAGTGAGCCGGTG 60.431 66.667 11.55 0.00 0.00 4.94
80 81 2.596338 TCGACAGTGAGCCGGTGA 60.596 61.111 1.90 0.00 0.00 4.02
81 82 1.977009 TCGACAGTGAGCCGGTGAT 60.977 57.895 1.90 0.00 0.00 3.06
82 83 1.517257 CGACAGTGAGCCGGTGATC 60.517 63.158 1.90 0.00 0.00 2.92
83 84 1.153549 GACAGTGAGCCGGTGATCC 60.154 63.158 1.90 0.00 0.00 3.36
122 123 4.143333 CGACCTCCGCCGACCATT 62.143 66.667 0.00 0.00 0.00 3.16
123 124 2.511600 GACCTCCGCCGACCATTG 60.512 66.667 0.00 0.00 0.00 2.82
124 125 3.000819 ACCTCCGCCGACCATTGA 61.001 61.111 0.00 0.00 0.00 2.57
125 126 2.311688 GACCTCCGCCGACCATTGAT 62.312 60.000 0.00 0.00 0.00 2.57
126 127 1.153168 CCTCCGCCGACCATTGATT 60.153 57.895 0.00 0.00 0.00 2.57
127 128 0.748005 CCTCCGCCGACCATTGATTT 60.748 55.000 0.00 0.00 0.00 2.17
128 129 1.474320 CCTCCGCCGACCATTGATTTA 60.474 52.381 0.00 0.00 0.00 1.40
129 130 2.494059 CTCCGCCGACCATTGATTTAT 58.506 47.619 0.00 0.00 0.00 1.40
130 131 3.556213 CCTCCGCCGACCATTGATTTATA 60.556 47.826 0.00 0.00 0.00 0.98
131 132 4.062293 CTCCGCCGACCATTGATTTATAA 58.938 43.478 0.00 0.00 0.00 0.98
132 133 4.452825 TCCGCCGACCATTGATTTATAAA 58.547 39.130 0.00 0.00 0.00 1.40
133 134 5.067273 TCCGCCGACCATTGATTTATAAAT 58.933 37.500 10.51 10.51 0.00 1.40
134 135 5.533154 TCCGCCGACCATTGATTTATAAATT 59.467 36.000 11.92 0.00 0.00 1.82
135 136 6.039941 TCCGCCGACCATTGATTTATAAATTT 59.960 34.615 11.92 0.00 0.00 1.82
136 137 6.699642 CCGCCGACCATTGATTTATAAATTTT 59.300 34.615 11.92 0.00 0.00 1.82
137 138 7.863375 CCGCCGACCATTGATTTATAAATTTTA 59.137 33.333 11.92 2.03 0.00 1.52
138 139 8.687301 CGCCGACCATTGATTTATAAATTTTAC 58.313 33.333 11.92 0.56 0.00 2.01
139 140 9.522804 GCCGACCATTGATTTATAAATTTTACA 57.477 29.630 11.92 3.10 0.00 2.41
143 144 9.830975 ACCATTGATTTATAAATTTTACAGGCC 57.169 29.630 11.92 0.00 0.00 5.19
144 145 8.977505 CCATTGATTTATAAATTTTACAGGCCG 58.022 33.333 11.92 0.00 0.00 6.13
145 146 8.977505 CATTGATTTATAAATTTTACAGGCCGG 58.022 33.333 11.92 0.00 0.00 6.13
146 147 7.045126 TGATTTATAAATTTTACAGGCCGGG 57.955 36.000 11.92 1.20 0.00 5.73
147 148 4.922471 TTATAAATTTTACAGGCCGGGC 57.078 40.909 22.67 22.67 0.00 6.13
159 160 2.510664 GCCGGGCCATTTTTATGGA 58.489 52.632 8.12 0.00 44.39 3.41
160 161 1.047801 GCCGGGCCATTTTTATGGAT 58.952 50.000 8.12 0.00 44.39 3.41
161 162 1.000843 GCCGGGCCATTTTTATGGATC 59.999 52.381 8.12 0.00 44.39 3.36
162 163 2.597455 CCGGGCCATTTTTATGGATCT 58.403 47.619 4.39 0.00 44.39 2.75
163 164 2.297033 CCGGGCCATTTTTATGGATCTG 59.703 50.000 4.39 4.59 44.39 2.90
164 165 2.958355 CGGGCCATTTTTATGGATCTGT 59.042 45.455 4.39 0.00 44.39 3.41
165 166 3.384467 CGGGCCATTTTTATGGATCTGTT 59.616 43.478 4.39 0.00 44.39 3.16
166 167 4.499696 CGGGCCATTTTTATGGATCTGTTC 60.500 45.833 4.39 0.00 44.39 3.18
167 168 4.499696 GGGCCATTTTTATGGATCTGTTCG 60.500 45.833 4.39 0.00 44.39 3.95
168 169 4.499696 GGCCATTTTTATGGATCTGTTCGG 60.500 45.833 8.32 0.00 44.39 4.30
169 170 4.499696 GCCATTTTTATGGATCTGTTCGGG 60.500 45.833 8.32 0.00 44.39 5.14
170 171 4.644685 CCATTTTTATGGATCTGTTCGGGT 59.355 41.667 0.00 0.00 44.39 5.28
171 172 5.825679 CCATTTTTATGGATCTGTTCGGGTA 59.174 40.000 0.00 0.00 44.39 3.69
172 173 6.320164 CCATTTTTATGGATCTGTTCGGGTAA 59.680 38.462 0.00 0.00 44.39 2.85
173 174 7.147983 CCATTTTTATGGATCTGTTCGGGTAAA 60.148 37.037 0.00 0.00 44.39 2.01
174 175 7.762588 TTTTTATGGATCTGTTCGGGTAAAA 57.237 32.000 0.00 0.00 0.00 1.52
175 176 7.762588 TTTTATGGATCTGTTCGGGTAAAAA 57.237 32.000 0.00 0.00 0.00 1.94
198 199 8.836959 AAAAAGAAAGCAGTAAAACGTCTTAG 57.163 30.769 0.00 0.00 0.00 2.18
199 200 7.781548 AAAGAAAGCAGTAAAACGTCTTAGA 57.218 32.000 0.00 0.00 0.00 2.10
200 201 7.409465 AAGAAAGCAGTAAAACGTCTTAGAG 57.591 36.000 0.00 0.00 0.00 2.43
201 202 6.746120 AGAAAGCAGTAAAACGTCTTAGAGA 58.254 36.000 0.00 0.00 0.00 3.10
202 203 7.208080 AGAAAGCAGTAAAACGTCTTAGAGAA 58.792 34.615 0.00 0.00 0.00 2.87
203 204 7.709613 AGAAAGCAGTAAAACGTCTTAGAGAAA 59.290 33.333 0.00 0.00 0.00 2.52
204 205 7.781548 AAGCAGTAAAACGTCTTAGAGAAAA 57.218 32.000 0.00 0.00 0.00 2.29
205 206 7.964604 AGCAGTAAAACGTCTTAGAGAAAAT 57.035 32.000 0.00 0.00 0.00 1.82
206 207 9.485206 AAGCAGTAAAACGTCTTAGAGAAAATA 57.515 29.630 0.00 0.00 0.00 1.40
207 208 9.654663 AGCAGTAAAACGTCTTAGAGAAAATAT 57.345 29.630 0.00 0.00 0.00 1.28
215 216 9.713740 AACGTCTTAGAGAAAATATACTGTACG 57.286 33.333 0.00 0.00 0.00 3.67
216 217 9.102757 ACGTCTTAGAGAAAATATACTGTACGA 57.897 33.333 0.00 0.00 0.00 3.43
217 218 9.926751 CGTCTTAGAGAAAATATACTGTACGAA 57.073 33.333 0.00 0.00 0.00 3.85
255 256 8.830201 TTTTCATGTAATCTTTGGGAAACATG 57.170 30.769 6.87 6.87 44.67 3.21
365 370 2.363172 AAGGGCGGCCTCTCTTCTC 61.363 63.158 32.90 0.00 0.00 2.87
578 583 2.926329 AGGTTTCTCTCCCTCTCTCTCT 59.074 50.000 0.00 0.00 0.00 3.10
910 922 2.514824 GGTGCTCGATCCTTGGGC 60.515 66.667 0.00 0.00 0.00 5.36
934 946 4.530857 GAGGTGCCGATCCCCACG 62.531 72.222 4.80 0.00 32.85 4.94
1184 1207 9.699410 AATAGGTGATGAATTGGTAAGAATTGA 57.301 29.630 0.00 0.00 0.00 2.57
1208 1231 7.121020 TGAAGTTATTCTGTCTTGCATTGCATA 59.879 33.333 12.95 0.87 35.89 3.14
1209 1232 7.578310 AGTTATTCTGTCTTGCATTGCATAT 57.422 32.000 12.95 1.21 38.76 1.78
1227 1250 4.025145 GCATATAGTTAAGAAAAGGCGCGT 60.025 41.667 8.43 0.00 0.00 6.01
1237 1260 1.961180 AAAGGCGCGTCTAGGCTCAT 61.961 55.000 16.40 0.00 44.05 2.90
1240 1263 1.946650 GCGCGTCTAGGCTCATGAC 60.947 63.158 8.43 0.00 0.00 3.06
1260 1283 4.706476 TGACAGCAAAATGCCTAGCTTAAT 59.294 37.500 0.00 0.00 46.52 1.40
1270 1303 3.882888 TGCCTAGCTTAATTGCGCTTAAT 59.117 39.130 9.73 0.00 37.68 1.40
1271 1304 4.222114 GCCTAGCTTAATTGCGCTTAATG 58.778 43.478 9.73 2.19 37.68 1.90
1272 1305 4.261197 GCCTAGCTTAATTGCGCTTAATGT 60.261 41.667 9.73 0.00 37.68 2.71
1273 1306 5.207768 CCTAGCTTAATTGCGCTTAATGTG 58.792 41.667 9.73 0.00 37.68 3.21
1274 1307 4.701956 AGCTTAATTGCGCTTAATGTGT 57.298 36.364 9.73 0.00 38.13 3.72
1275 1308 4.414852 AGCTTAATTGCGCTTAATGTGTG 58.585 39.130 9.73 0.00 38.13 3.82
1276 1309 3.000773 GCTTAATTGCGCTTAATGTGTGC 60.001 43.478 9.73 2.01 40.87 4.57
1279 1312 3.994729 TGCGCTTAATGTGTGCATC 57.005 47.368 9.73 0.00 44.53 3.91
1280 1313 1.163554 TGCGCTTAATGTGTGCATCA 58.836 45.000 9.73 0.00 44.53 3.07
1281 1314 1.744522 TGCGCTTAATGTGTGCATCAT 59.255 42.857 9.73 0.00 44.53 2.45
1282 1315 2.164017 TGCGCTTAATGTGTGCATCATT 59.836 40.909 9.73 18.89 44.53 2.57
1283 1316 2.532723 GCGCTTAATGTGTGCATCATTG 59.467 45.455 21.88 12.29 40.28 2.82
1284 1317 3.761657 CGCTTAATGTGTGCATCATTGT 58.238 40.909 21.88 7.10 36.92 2.71
1285 1318 3.544682 CGCTTAATGTGTGCATCATTGTG 59.455 43.478 21.88 16.67 36.92 3.33
1286 1319 3.305094 GCTTAATGTGTGCATCATTGTGC 59.695 43.478 21.88 20.27 45.25 4.57
1287 1320 4.740268 CTTAATGTGTGCATCATTGTGCT 58.260 39.130 21.88 6.03 45.27 4.40
1288 1321 3.671008 AATGTGTGCATCATTGTGCTT 57.329 38.095 15.77 0.00 45.27 3.91
1289 1322 4.787260 AATGTGTGCATCATTGTGCTTA 57.213 36.364 15.77 0.88 45.27 3.09
1290 1323 4.787260 ATGTGTGCATCATTGTGCTTAA 57.213 36.364 10.93 0.00 45.27 1.85
1291 1324 3.899734 TGTGTGCATCATTGTGCTTAAC 58.100 40.909 10.93 7.88 45.27 2.01
1313 1346 2.143925 GTGCGCTCTGGTAAGAAAAGT 58.856 47.619 9.73 0.00 30.03 2.66
1318 1351 3.364366 CGCTCTGGTAAGAAAAGTGCAAG 60.364 47.826 0.00 0.00 32.21 4.01
1321 1354 1.606668 TGGTAAGAAAAGTGCAAGGCG 59.393 47.619 0.00 0.00 0.00 5.52
1333 1366 0.388520 GCAAGGCGGTGGCTTTTTAG 60.389 55.000 2.55 0.00 46.16 1.85
1341 1374 2.794350 CGGTGGCTTTTTAGCTTTGTTG 59.206 45.455 0.00 0.00 34.73 3.33
1342 1375 3.130633 GGTGGCTTTTTAGCTTTGTTGG 58.869 45.455 0.00 0.00 34.73 3.77
1343 1376 3.431626 GGTGGCTTTTTAGCTTTGTTGGT 60.432 43.478 0.00 0.00 34.73 3.67
1344 1377 3.555547 GTGGCTTTTTAGCTTTGTTGGTG 59.444 43.478 0.00 0.00 34.73 4.17
1345 1378 3.449018 TGGCTTTTTAGCTTTGTTGGTGA 59.551 39.130 0.00 0.00 34.73 4.02
1346 1379 4.100808 TGGCTTTTTAGCTTTGTTGGTGAT 59.899 37.500 0.00 0.00 34.73 3.06
1347 1380 5.303078 TGGCTTTTTAGCTTTGTTGGTGATA 59.697 36.000 0.00 0.00 34.73 2.15
1348 1381 5.863935 GGCTTTTTAGCTTTGTTGGTGATAG 59.136 40.000 0.00 0.00 34.73 2.08
1351 1384 7.814587 GCTTTTTAGCTTTGTTGGTGATAGATT 59.185 33.333 0.00 0.00 0.00 2.40
1358 1391 9.125026 AGCTTTGTTGGTGATAGATTATTTAGG 57.875 33.333 0.00 0.00 0.00 2.69
1362 1395 9.967451 TTGTTGGTGATAGATTATTTAGGTTCA 57.033 29.630 0.00 0.00 0.00 3.18
1364 1397 9.614792 GTTGGTGATAGATTATTTAGGTTCACT 57.385 33.333 0.00 0.00 34.23 3.41
1365 1398 9.832445 TTGGTGATAGATTATTTAGGTTCACTC 57.168 33.333 0.00 0.00 34.23 3.51
1367 1400 7.116519 GGTGATAGATTATTTAGGTTCACTCGC 59.883 40.741 0.00 0.00 34.23 5.03
1368 1401 7.652105 GTGATAGATTATTTAGGTTCACTCGCA 59.348 37.037 0.00 0.00 31.78 5.10
1374 1407 9.353999 GATTATTTAGGTTCACTCGCAATTTTT 57.646 29.630 0.00 0.00 0.00 1.94
1417 1450 7.284919 AGGTTAAATTTGTTTAGTGTCAGGG 57.715 36.000 0.00 0.00 0.00 4.45
1418 1451 7.064229 AGGTTAAATTTGTTTAGTGTCAGGGA 58.936 34.615 0.00 0.00 0.00 4.20
1419 1452 7.562088 AGGTTAAATTTGTTTAGTGTCAGGGAA 59.438 33.333 0.00 0.00 0.00 3.97
1420 1453 8.198778 GGTTAAATTTGTTTAGTGTCAGGGAAA 58.801 33.333 0.00 0.00 0.00 3.13
1421 1454 9.244799 GTTAAATTTGTTTAGTGTCAGGGAAAG 57.755 33.333 0.00 0.00 0.00 2.62
1422 1455 7.418337 AAATTTGTTTAGTGTCAGGGAAAGT 57.582 32.000 0.00 0.00 0.00 2.66
1423 1456 8.528044 AAATTTGTTTAGTGTCAGGGAAAGTA 57.472 30.769 0.00 0.00 0.00 2.24
1424 1457 8.528044 AATTTGTTTAGTGTCAGGGAAAGTAA 57.472 30.769 0.00 0.00 0.00 2.24
1425 1458 7.941431 TTTGTTTAGTGTCAGGGAAAGTAAA 57.059 32.000 0.00 0.00 0.00 2.01
1426 1459 8.528044 TTTGTTTAGTGTCAGGGAAAGTAAAT 57.472 30.769 1.04 0.00 30.43 1.40
1427 1460 7.739498 TGTTTAGTGTCAGGGAAAGTAAATC 57.261 36.000 1.04 0.00 30.43 2.17
1428 1461 7.284074 TGTTTAGTGTCAGGGAAAGTAAATCA 58.716 34.615 1.04 0.20 30.43 2.57
1429 1462 7.776030 TGTTTAGTGTCAGGGAAAGTAAATCAA 59.224 33.333 1.04 0.00 30.43 2.57
1430 1463 7.979444 TTAGTGTCAGGGAAAGTAAATCAAG 57.021 36.000 0.00 0.00 0.00 3.02
1431 1464 6.187727 AGTGTCAGGGAAAGTAAATCAAGA 57.812 37.500 0.00 0.00 0.00 3.02
1432 1465 6.784031 AGTGTCAGGGAAAGTAAATCAAGAT 58.216 36.000 0.00 0.00 0.00 2.40
1433 1466 7.234355 AGTGTCAGGGAAAGTAAATCAAGATT 58.766 34.615 0.00 0.00 0.00 2.40
1434 1467 7.391833 AGTGTCAGGGAAAGTAAATCAAGATTC 59.608 37.037 0.00 0.00 0.00 2.52
1435 1468 7.391833 GTGTCAGGGAAAGTAAATCAAGATTCT 59.608 37.037 0.00 0.00 0.00 2.40
1436 1469 7.391554 TGTCAGGGAAAGTAAATCAAGATTCTG 59.608 37.037 0.00 0.00 0.00 3.02
1437 1470 7.391833 GTCAGGGAAAGTAAATCAAGATTCTGT 59.608 37.037 0.00 0.00 0.00 3.41
1438 1471 7.391554 TCAGGGAAAGTAAATCAAGATTCTGTG 59.608 37.037 0.00 0.00 0.00 3.66
1439 1472 6.660949 AGGGAAAGTAAATCAAGATTCTGTGG 59.339 38.462 0.00 0.00 0.00 4.17
1440 1473 6.434340 GGGAAAGTAAATCAAGATTCTGTGGT 59.566 38.462 0.00 0.00 0.00 4.16
1441 1474 7.362142 GGGAAAGTAAATCAAGATTCTGTGGTC 60.362 40.741 0.00 0.00 0.00 4.02
1442 1475 6.727824 AAGTAAATCAAGATTCTGTGGTCG 57.272 37.500 0.00 0.00 0.00 4.79
1443 1476 5.794894 AGTAAATCAAGATTCTGTGGTCGT 58.205 37.500 0.00 0.00 0.00 4.34
1444 1477 5.869888 AGTAAATCAAGATTCTGTGGTCGTC 59.130 40.000 0.00 0.00 0.00 4.20
1445 1478 2.347697 TCAAGATTCTGTGGTCGTCG 57.652 50.000 0.00 0.00 0.00 5.12
1446 1479 1.067846 TCAAGATTCTGTGGTCGTCGG 60.068 52.381 0.00 0.00 0.00 4.79
1447 1480 0.966920 AAGATTCTGTGGTCGTCGGT 59.033 50.000 0.00 0.00 0.00 4.69
1448 1481 0.243907 AGATTCTGTGGTCGTCGGTG 59.756 55.000 0.00 0.00 0.00 4.94
1449 1482 0.736325 GATTCTGTGGTCGTCGGTGG 60.736 60.000 0.00 0.00 0.00 4.61
1450 1483 1.183030 ATTCTGTGGTCGTCGGTGGA 61.183 55.000 0.00 0.00 0.00 4.02
1451 1484 1.393487 TTCTGTGGTCGTCGGTGGAA 61.393 55.000 0.00 0.00 0.00 3.53
1452 1485 1.183030 TCTGTGGTCGTCGGTGGAAT 61.183 55.000 0.00 0.00 0.00 3.01
1453 1486 0.528924 CTGTGGTCGTCGGTGGAATA 59.471 55.000 0.00 0.00 0.00 1.75
1454 1487 0.967662 TGTGGTCGTCGGTGGAATAA 59.032 50.000 0.00 0.00 0.00 1.40
1455 1488 1.551430 TGTGGTCGTCGGTGGAATAAT 59.449 47.619 0.00 0.00 0.00 1.28
1456 1489 1.931172 GTGGTCGTCGGTGGAATAATG 59.069 52.381 0.00 0.00 0.00 1.90
1457 1490 1.826096 TGGTCGTCGGTGGAATAATGA 59.174 47.619 0.00 0.00 0.00 2.57
1458 1491 2.199236 GGTCGTCGGTGGAATAATGAC 58.801 52.381 0.00 0.00 0.00 3.06
1459 1492 2.417651 GGTCGTCGGTGGAATAATGACA 60.418 50.000 0.00 0.00 0.00 3.58
1460 1493 2.601763 GTCGTCGGTGGAATAATGACAC 59.398 50.000 0.00 0.00 0.00 3.67
1461 1494 2.494471 TCGTCGGTGGAATAATGACACT 59.506 45.455 0.00 0.00 35.53 3.55
1462 1495 3.695556 TCGTCGGTGGAATAATGACACTA 59.304 43.478 0.00 0.00 35.53 2.74
1463 1496 3.795101 CGTCGGTGGAATAATGACACTAC 59.205 47.826 0.00 0.00 35.53 2.73
1464 1497 4.439700 CGTCGGTGGAATAATGACACTACT 60.440 45.833 0.00 0.00 35.53 2.57
1465 1498 5.041940 GTCGGTGGAATAATGACACTACTC 58.958 45.833 0.00 0.00 35.53 2.59
1466 1499 4.707934 TCGGTGGAATAATGACACTACTCA 59.292 41.667 0.00 0.00 35.53 3.41
1467 1500 5.362717 TCGGTGGAATAATGACACTACTCAT 59.637 40.000 0.00 0.00 35.53 2.90
1468 1501 5.463392 CGGTGGAATAATGACACTACTCATG 59.537 44.000 0.00 0.00 35.53 3.07
1469 1502 5.237344 GGTGGAATAATGACACTACTCATGC 59.763 44.000 0.00 0.00 35.53 4.06
1470 1503 6.051717 GTGGAATAATGACACTACTCATGCT 58.948 40.000 0.00 0.00 30.92 3.79
1471 1504 6.540189 GTGGAATAATGACACTACTCATGCTT 59.460 38.462 0.00 0.00 30.92 3.91
1472 1505 6.539826 TGGAATAATGACACTACTCATGCTTG 59.460 38.462 0.00 0.00 30.92 4.01
1473 1506 6.540189 GGAATAATGACACTACTCATGCTTGT 59.460 38.462 0.00 0.00 30.92 3.16
1474 1507 7.710907 GGAATAATGACACTACTCATGCTTGTA 59.289 37.037 0.00 0.00 30.92 2.41
1475 1508 9.265901 GAATAATGACACTACTCATGCTTGTAT 57.734 33.333 0.00 0.00 30.92 2.29
1476 1509 9.618890 AATAATGACACTACTCATGCTTGTATT 57.381 29.630 0.00 0.00 30.92 1.89
1477 1510 7.545362 AATGACACTACTCATGCTTGTATTC 57.455 36.000 0.00 0.00 30.92 1.75
1478 1511 5.102313 TGACACTACTCATGCTTGTATTCG 58.898 41.667 0.00 0.00 0.00 3.34
1479 1512 4.433615 ACACTACTCATGCTTGTATTCGG 58.566 43.478 0.00 0.00 0.00 4.30
1480 1513 4.081642 ACACTACTCATGCTTGTATTCGGT 60.082 41.667 0.00 0.00 0.00 4.69
1481 1514 4.504461 CACTACTCATGCTTGTATTCGGTC 59.496 45.833 0.00 0.00 0.00 4.79
1482 1515 3.895232 ACTCATGCTTGTATTCGGTCT 57.105 42.857 0.00 0.00 0.00 3.85
1483 1516 5.593095 ACTACTCATGCTTGTATTCGGTCTA 59.407 40.000 0.00 0.00 0.00 2.59
1484 1517 4.683832 ACTCATGCTTGTATTCGGTCTAC 58.316 43.478 0.00 0.00 0.00 2.59
1485 1518 4.159693 ACTCATGCTTGTATTCGGTCTACA 59.840 41.667 0.00 0.00 0.00 2.74
1486 1519 4.682787 TCATGCTTGTATTCGGTCTACAG 58.317 43.478 0.00 0.00 31.17 2.74
1487 1520 2.888594 TGCTTGTATTCGGTCTACAGC 58.111 47.619 0.00 0.00 31.17 4.40
1488 1521 2.202566 GCTTGTATTCGGTCTACAGCC 58.797 52.381 0.00 0.00 31.17 4.85
1489 1522 2.159085 GCTTGTATTCGGTCTACAGCCT 60.159 50.000 0.00 0.00 31.17 4.58
1490 1523 3.679083 GCTTGTATTCGGTCTACAGCCTT 60.679 47.826 0.00 0.00 31.17 4.35
1491 1524 4.441079 GCTTGTATTCGGTCTACAGCCTTA 60.441 45.833 0.00 0.00 31.17 2.69
1492 1525 4.644103 TGTATTCGGTCTACAGCCTTAC 57.356 45.455 0.00 0.00 0.00 2.34
1493 1526 2.865343 ATTCGGTCTACAGCCTTACG 57.135 50.000 0.00 0.00 0.00 3.18
1494 1527 0.813184 TTCGGTCTACAGCCTTACGG 59.187 55.000 0.00 0.00 0.00 4.02
1495 1528 0.322816 TCGGTCTACAGCCTTACGGT 60.323 55.000 0.00 0.00 0.00 4.83
1496 1529 1.065491 TCGGTCTACAGCCTTACGGTA 60.065 52.381 0.00 0.00 0.00 4.02
1497 1530 1.745087 CGGTCTACAGCCTTACGGTAA 59.255 52.381 0.00 0.00 0.00 2.85
1498 1531 2.478539 CGGTCTACAGCCTTACGGTAAC 60.479 54.545 0.00 0.00 0.00 2.50
1499 1532 2.493278 GGTCTACAGCCTTACGGTAACA 59.507 50.000 0.00 0.00 0.00 2.41
1500 1533 3.056607 GGTCTACAGCCTTACGGTAACAA 60.057 47.826 0.00 0.00 0.00 2.83
1501 1534 4.171754 GTCTACAGCCTTACGGTAACAAG 58.828 47.826 0.00 0.00 0.00 3.16
1502 1535 1.804601 ACAGCCTTACGGTAACAAGC 58.195 50.000 0.00 1.11 0.00 4.01
1503 1536 1.084289 CAGCCTTACGGTAACAAGCC 58.916 55.000 0.00 0.00 0.00 4.35
1504 1537 0.688487 AGCCTTACGGTAACAAGCCA 59.312 50.000 0.00 0.00 0.00 4.75
1505 1538 1.280998 AGCCTTACGGTAACAAGCCAT 59.719 47.619 0.00 0.00 0.00 4.40
1506 1539 2.502538 AGCCTTACGGTAACAAGCCATA 59.497 45.455 0.00 0.00 0.00 2.74
1507 1540 3.054948 AGCCTTACGGTAACAAGCCATAA 60.055 43.478 0.00 0.00 0.00 1.90
1508 1541 3.881089 GCCTTACGGTAACAAGCCATAAT 59.119 43.478 0.00 0.00 0.00 1.28
1509 1542 4.261031 GCCTTACGGTAACAAGCCATAATG 60.261 45.833 0.00 0.00 0.00 1.90
1510 1543 4.261031 CCTTACGGTAACAAGCCATAATGC 60.261 45.833 0.00 0.00 0.00 3.56
1511 1544 2.021457 ACGGTAACAAGCCATAATGCC 58.979 47.619 0.00 0.00 0.00 4.40
1512 1545 1.002900 CGGTAACAAGCCATAATGCCG 60.003 52.381 0.00 0.00 0.00 5.69
1513 1546 1.336755 GGTAACAAGCCATAATGCCGG 59.663 52.381 0.00 0.00 0.00 6.13
1514 1547 1.336755 GTAACAAGCCATAATGCCGGG 59.663 52.381 2.18 0.00 0.00 5.73
1518 1551 3.668386 GCCATAATGCCGGGCTAC 58.332 61.111 21.46 0.00 44.32 3.58
1519 1552 1.971695 GCCATAATGCCGGGCTACC 60.972 63.158 21.46 0.00 44.32 3.18
1520 1553 1.761174 CCATAATGCCGGGCTACCT 59.239 57.895 21.46 4.34 33.28 3.08
1521 1554 0.606401 CCATAATGCCGGGCTACCTG 60.606 60.000 21.46 12.15 33.28 4.00
1522 1555 1.073199 ATAATGCCGGGCTACCTGC 59.927 57.895 21.46 0.00 46.12 4.85
1526 1559 3.467226 GCCGGGCTACCTGCAGTA 61.467 66.667 12.87 4.50 45.34 2.74
1527 1560 2.499685 CCGGGCTACCTGCAGTAC 59.500 66.667 13.81 0.00 45.15 2.73
1528 1561 2.058595 CCGGGCTACCTGCAGTACT 61.059 63.158 13.81 0.00 45.15 2.73
1529 1562 1.141881 CGGGCTACCTGCAGTACTG 59.858 63.158 18.93 18.93 45.15 2.74
1530 1563 1.320344 CGGGCTACCTGCAGTACTGA 61.320 60.000 27.08 10.55 45.15 3.41
1531 1564 1.123928 GGGCTACCTGCAGTACTGAT 58.876 55.000 27.08 10.41 45.15 2.90
1532 1565 1.202580 GGGCTACCTGCAGTACTGATG 60.203 57.143 27.08 16.38 45.15 3.07
1533 1566 1.576356 GCTACCTGCAGTACTGATGC 58.424 55.000 27.08 12.77 44.11 3.91
1540 1573 1.446907 GCAGTACTGATGCAGCAAGT 58.553 50.000 27.08 9.09 43.31 3.16
1541 1574 1.129998 GCAGTACTGATGCAGCAAGTG 59.870 52.381 27.08 6.61 43.31 3.16
1569 1602 4.557205 GACACTACTGTCGATTTCCTTGT 58.443 43.478 0.00 0.00 37.67 3.16
1570 1603 4.307432 ACACTACTGTCGATTTCCTTGTG 58.693 43.478 0.00 0.00 0.00 3.33
1571 1604 4.202223 ACACTACTGTCGATTTCCTTGTGT 60.202 41.667 0.00 0.00 0.00 3.72
1572 1605 4.150627 CACTACTGTCGATTTCCTTGTGTG 59.849 45.833 0.00 0.00 0.00 3.82
1573 1606 3.469008 ACTGTCGATTTCCTTGTGTGA 57.531 42.857 0.00 0.00 0.00 3.58
1574 1607 4.008074 ACTGTCGATTTCCTTGTGTGAT 57.992 40.909 0.00 0.00 0.00 3.06
1575 1608 5.147330 ACTGTCGATTTCCTTGTGTGATA 57.853 39.130 0.00 0.00 0.00 2.15
1576 1609 4.929808 ACTGTCGATTTCCTTGTGTGATAC 59.070 41.667 0.00 0.00 0.00 2.24
1577 1610 4.888917 TGTCGATTTCCTTGTGTGATACA 58.111 39.130 0.00 0.00 37.56 2.29
1591 1624 5.357742 TGTGATACACATGCCACTATCTT 57.642 39.130 0.25 0.00 39.62 2.40
1592 1625 5.118286 TGTGATACACATGCCACTATCTTG 58.882 41.667 0.25 0.00 39.62 3.02
1593 1626 5.118990 GTGATACACATGCCACTATCTTGT 58.881 41.667 0.00 0.00 34.08 3.16
1594 1627 6.127196 TGTGATACACATGCCACTATCTTGTA 60.127 38.462 0.25 0.00 39.62 2.41
1595 1628 6.201044 GTGATACACATGCCACTATCTTGTAC 59.799 42.308 0.00 0.00 34.08 2.90
1596 1629 4.826274 ACACATGCCACTATCTTGTACT 57.174 40.909 0.00 0.00 0.00 2.73
1597 1630 4.759782 ACACATGCCACTATCTTGTACTC 58.240 43.478 0.00 0.00 0.00 2.59
1598 1631 4.122776 CACATGCCACTATCTTGTACTCC 58.877 47.826 0.00 0.00 0.00 3.85
1599 1632 3.774766 ACATGCCACTATCTTGTACTCCA 59.225 43.478 0.00 0.00 0.00 3.86
1600 1633 4.225042 ACATGCCACTATCTTGTACTCCAA 59.775 41.667 0.00 0.00 0.00 3.53
1601 1634 4.901197 TGCCACTATCTTGTACTCCAAA 57.099 40.909 0.00 0.00 31.20 3.28
1602 1635 5.235850 TGCCACTATCTTGTACTCCAAAA 57.764 39.130 0.00 0.00 31.20 2.44
1603 1636 5.815581 TGCCACTATCTTGTACTCCAAAAT 58.184 37.500 0.00 0.00 31.20 1.82
1604 1637 5.647658 TGCCACTATCTTGTACTCCAAAATG 59.352 40.000 0.00 0.00 31.20 2.32
1605 1638 5.066505 GCCACTATCTTGTACTCCAAAATGG 59.933 44.000 0.00 0.00 39.43 3.16
1606 1639 6.414732 CCACTATCTTGTACTCCAAAATGGA 58.585 40.000 0.00 0.00 45.98 3.41
1617 1650 3.379452 TCCAAAATGGAGTGGGTTTTGT 58.621 40.909 0.00 0.00 42.67 2.83
1618 1651 3.133721 TCCAAAATGGAGTGGGTTTTGTG 59.866 43.478 0.00 2.29 42.67 3.33
1619 1652 3.118445 CCAAAATGGAGTGGGTTTTGTGT 60.118 43.478 8.44 0.00 40.96 3.72
1620 1653 4.119136 CAAAATGGAGTGGGTTTTGTGTC 58.881 43.478 0.00 0.00 37.79 3.67
1621 1654 3.312736 AATGGAGTGGGTTTTGTGTCT 57.687 42.857 0.00 0.00 0.00 3.41
1622 1655 2.341846 TGGAGTGGGTTTTGTGTCTC 57.658 50.000 0.00 0.00 0.00 3.36
1623 1656 1.562008 TGGAGTGGGTTTTGTGTCTCA 59.438 47.619 0.00 0.00 0.00 3.27
1624 1657 2.025793 TGGAGTGGGTTTTGTGTCTCAA 60.026 45.455 0.00 0.00 0.00 3.02
1625 1658 2.618709 GGAGTGGGTTTTGTGTCTCAAG 59.381 50.000 0.00 0.00 37.35 3.02
1626 1659 3.541632 GAGTGGGTTTTGTGTCTCAAGA 58.458 45.455 0.00 0.00 37.35 3.02
1627 1660 3.545703 AGTGGGTTTTGTGTCTCAAGAG 58.454 45.455 0.00 0.00 37.35 2.85
1628 1661 3.199946 AGTGGGTTTTGTGTCTCAAGAGA 59.800 43.478 0.00 0.00 37.35 3.10
1629 1662 3.945285 GTGGGTTTTGTGTCTCAAGAGAA 59.055 43.478 0.57 0.00 39.48 2.87
1630 1663 4.580580 GTGGGTTTTGTGTCTCAAGAGAAT 59.419 41.667 0.57 0.00 39.48 2.40
1631 1664 5.067805 GTGGGTTTTGTGTCTCAAGAGAATT 59.932 40.000 0.57 0.00 39.48 2.17
1632 1665 5.656416 TGGGTTTTGTGTCTCAAGAGAATTT 59.344 36.000 0.57 0.00 39.48 1.82
1633 1666 6.183360 TGGGTTTTGTGTCTCAAGAGAATTTC 60.183 38.462 0.57 0.00 39.48 2.17
1634 1667 6.039829 GGGTTTTGTGTCTCAAGAGAATTTCT 59.960 38.462 0.57 0.00 39.48 2.52
1690 1723 8.618702 ATTCATCATCTATCATGAAACCTGAC 57.381 34.615 0.00 0.00 41.28 3.51
1691 1724 7.370905 TCATCATCTATCATGAAACCTGACT 57.629 36.000 0.00 0.00 0.00 3.41
1692 1725 8.482852 TCATCATCTATCATGAAACCTGACTA 57.517 34.615 0.00 0.00 0.00 2.59
1693 1726 8.583296 TCATCATCTATCATGAAACCTGACTAG 58.417 37.037 0.00 0.00 0.00 2.57
1694 1727 7.904558 TCATCTATCATGAAACCTGACTAGT 57.095 36.000 0.00 0.00 0.00 2.57
1695 1728 8.311395 TCATCTATCATGAAACCTGACTAGTT 57.689 34.615 0.00 0.00 0.00 2.24
1696 1729 9.421399 TCATCTATCATGAAACCTGACTAGTTA 57.579 33.333 0.00 0.00 0.00 2.24
1699 1732 9.031537 TCTATCATGAAACCTGACTAGTTAACA 57.968 33.333 8.61 0.00 0.00 2.41
1700 1733 9.823647 CTATCATGAAACCTGACTAGTTAACAT 57.176 33.333 8.61 0.00 0.00 2.71
1702 1735 9.823647 ATCATGAAACCTGACTAGTTAACATAG 57.176 33.333 8.61 9.04 0.00 2.23
1703 1736 8.812972 TCATGAAACCTGACTAGTTAACATAGT 58.187 33.333 8.61 11.96 36.19 2.12
1742 1775 8.333908 GTCTTATGTCTTTTGTCTATGCTCATG 58.666 37.037 0.00 0.00 0.00 3.07
1744 1777 8.791327 TTATGTCTTTTGTCTATGCTCATGAA 57.209 30.769 0.00 0.00 0.00 2.57
1747 1780 6.712095 TGTCTTTTGTCTATGCTCATGAAACT 59.288 34.615 0.00 0.00 0.00 2.66
1749 1782 8.721478 GTCTTTTGTCTATGCTCATGAAACTAA 58.279 33.333 0.00 0.00 0.00 2.24
1752 1785 9.719355 TTTTGTCTATGCTCATGAAACTAAGTA 57.281 29.630 0.00 0.00 0.00 2.24
1789 1828 8.646004 ACTACAACTAATCAGTAGCATCATCAT 58.354 33.333 0.00 0.00 38.98 2.45
1791 1830 7.278135 ACAACTAATCAGTAGCATCATCATGT 58.722 34.615 0.00 0.00 33.48 3.21
1804 1843 5.505819 GCATCATCATGTTCTCATCCTGTTG 60.506 44.000 0.00 0.00 31.86 3.33
1808 1847 4.507710 TCATGTTCTCATCCTGTTGCTAC 58.492 43.478 0.00 0.00 31.15 3.58
1845 1886 2.577700 AGCGTTTTTACCATCACACCA 58.422 42.857 0.00 0.00 0.00 4.17
1854 1895 0.810648 CCATCACACCATTTCACCCG 59.189 55.000 0.00 0.00 0.00 5.28
1860 1901 0.393808 CACCATTTCACCCGGGTAGG 60.394 60.000 29.72 23.77 40.63 3.18
1920 1963 6.686484 AAACCTTGCCAATTTCTAGGAATT 57.314 33.333 2.89 2.89 32.13 2.17
1957 2000 7.928873 TCCTTCTTATAAATGAGAAACACCCT 58.071 34.615 0.00 0.00 32.90 4.34
1963 2006 3.441500 AATGAGAAACACCCTCCTTCC 57.558 47.619 0.00 0.00 0.00 3.46
2090 2133 4.218200 TGGAACAATTATGGCTCAACTGTG 59.782 41.667 0.00 0.00 31.92 3.66
2209 2252 5.305644 AGAAGTTGCCGATACTATTCTGGAT 59.694 40.000 0.00 0.00 0.00 3.41
2294 2337 0.179234 GGAGGAGGCAGGAAGCTTAC 59.821 60.000 0.00 0.00 44.79 2.34
2306 2349 3.274095 GAAGCTTACTGCCAGATTCCT 57.726 47.619 0.00 0.00 44.23 3.36
2408 2451 2.559668 CCAGCAAAAGAAGCAATCAGGA 59.440 45.455 0.00 0.00 0.00 3.86
2409 2452 3.572584 CAGCAAAAGAAGCAATCAGGAC 58.427 45.455 0.00 0.00 0.00 3.85
2433 2476 0.247736 TTCTCTTCCGAAGCAGAGGC 59.752 55.000 3.00 0.00 37.69 4.70
2446 2489 3.213402 GAGGCTCGTCCGCTAGCT 61.213 66.667 13.93 0.00 40.77 3.32
2593 2636 1.078918 CGAAGAGCCAGCATCACCA 60.079 57.895 0.00 0.00 0.00 4.17
2838 2881 1.879380 TGAATGTTGAAAGACCAGCCG 59.121 47.619 0.00 0.00 0.00 5.52
3067 3110 2.515901 ACCAGCACCAGGTGAACC 59.484 61.111 24.96 5.63 45.95 3.62
3068 3111 2.382770 ACCAGCACCAGGTGAACCA 61.383 57.895 24.96 0.00 45.95 3.67
3069 3112 1.601759 CCAGCACCAGGTGAACCAG 60.602 63.158 24.96 6.95 45.95 4.00
3123 3178 1.966451 GCACCAGGTGTACCAGCAC 60.966 63.158 21.26 0.00 38.89 4.40
3129 3184 4.379174 GTGTACCAGCACCAGGTG 57.621 61.111 16.16 16.16 40.26 4.00
3621 3706 2.294078 GGACCTCCACCTCCACCTG 61.294 68.421 0.00 0.00 35.64 4.00
3622 3707 2.203998 ACCTCCACCTCCACCTGG 60.204 66.667 0.00 0.00 0.00 4.45
3628 3713 0.895559 CCACCTCCACCTGGAAAAGC 60.896 60.000 0.00 0.00 44.91 3.51
4010 4095 7.306749 GCAAACCTGTTGACAAAAGTAATGATG 60.307 37.037 4.66 0.00 0.00 3.07
4011 4096 5.772521 ACCTGTTGACAAAAGTAATGATGC 58.227 37.500 4.66 0.00 0.00 3.91
4267 4352 2.939103 GGATACATGAACTGTGCTCCAC 59.061 50.000 0.00 0.00 39.26 4.02
4268 4353 3.599343 GATACATGAACTGTGCTCCACA 58.401 45.455 0.00 0.00 42.45 4.17
4269 4354 2.574006 ACATGAACTGTGCTCCACAT 57.426 45.000 0.00 0.00 43.71 3.21
4270 4355 2.156917 ACATGAACTGTGCTCCACATG 58.843 47.619 0.00 0.00 43.71 3.21
4271 4356 1.135489 CATGAACTGTGCTCCACATGC 60.135 52.381 0.00 0.00 43.71 4.06
4272 4357 0.179023 TGAACTGTGCTCCACATGCA 60.179 50.000 0.00 0.00 43.71 3.96
4273 4358 1.171308 GAACTGTGCTCCACATGCAT 58.829 50.000 0.00 0.00 43.71 3.96
4274 4359 0.885879 AACTGTGCTCCACATGCATG 59.114 50.000 25.09 25.09 43.71 4.06
4275 4360 1.138883 CTGTGCTCCACATGCATGC 59.861 57.895 26.53 11.82 43.71 4.06
4301 4386 4.785301 CATGGTGAGGAGGTGACAAATAT 58.215 43.478 0.00 0.00 0.00 1.28
4302 4387 4.220693 TGGTGAGGAGGTGACAAATATG 57.779 45.455 0.00 0.00 0.00 1.78
4303 4388 3.054434 TGGTGAGGAGGTGACAAATATGG 60.054 47.826 0.00 0.00 0.00 2.74
4304 4389 3.545703 GTGAGGAGGTGACAAATATGGG 58.454 50.000 0.00 0.00 0.00 4.00
4387 4472 1.410004 TCTATGGTAAGCTGGGACCG 58.590 55.000 7.90 0.00 38.69 4.79
4712 4797 3.776969 AGATGCCTCATTCTACTGACCAA 59.223 43.478 0.00 0.00 0.00 3.67
4713 4798 4.411540 AGATGCCTCATTCTACTGACCAAT 59.588 41.667 0.00 0.00 0.00 3.16
4714 4799 5.604231 AGATGCCTCATTCTACTGACCAATA 59.396 40.000 0.00 0.00 0.00 1.90
4715 4800 5.894298 TGCCTCATTCTACTGACCAATAT 57.106 39.130 0.00 0.00 0.00 1.28
4997 5082 2.672996 GCGGCCAAGGAGCAGAAA 60.673 61.111 2.24 0.00 0.00 2.52
5073 5158 0.732880 CGACACGGAGCACTACAAGG 60.733 60.000 0.00 0.00 0.00 3.61
5642 5727 3.243501 GCTCCAGCTCTGATTCTGACTAG 60.244 52.174 8.17 0.00 38.21 2.57
5669 5754 4.864704 AGCTTTCTAGGCTAGCTACATC 57.135 45.455 16.85 0.00 43.08 3.06
5670 5755 3.254657 AGCTTTCTAGGCTAGCTACATCG 59.745 47.826 16.85 0.00 43.08 3.84
5723 5808 1.175654 TGGCAACAGCATACACATGG 58.824 50.000 0.00 0.00 46.17 3.66
5939 6030 7.823149 TTTACTTAGTCTTCGCCAACTAATC 57.177 36.000 0.00 0.00 37.35 1.75
5961 6052 4.778143 ATGCGGCCGGGTGTCTTC 62.778 66.667 29.38 7.83 0.00 2.87
6089 6180 4.458989 TGTGGCATCAAGAGGATACAAAAC 59.541 41.667 0.00 0.00 41.41 2.43
6097 6188 7.815840 TCAAGAGGATACAAAACACAATGAA 57.184 32.000 0.00 0.00 41.41 2.57
6104 6195 9.859427 AGGATACAAAACACAATGAATAACATG 57.141 29.630 0.00 0.00 38.11 3.21
6117 6208 2.042686 TAACATGTGGCCTCTGCATC 57.957 50.000 3.32 0.00 40.13 3.91
6351 6456 4.728608 GCAAACTCTGCGGATTTATTAACG 59.271 41.667 0.00 0.00 42.37 3.18
6355 6460 0.938713 TGCGGATTTATTAACGGCCG 59.061 50.000 26.86 26.86 41.51 6.13
6392 6497 9.630098 AACAATGCACAATTTGAGTATTCTAAG 57.370 29.630 2.79 0.00 0.00 2.18
6440 6545 7.603963 GTTCTAGAGAACCAAGGAGATTTTC 57.396 40.000 10.74 0.00 46.42 2.29
6446 6551 7.946207 AGAGAACCAAGGAGATTTTCTTTTTC 58.054 34.615 0.00 0.00 0.00 2.29
6555 6667 5.906254 AGAGATTAGATAGTTACCCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
6556 6668 4.675038 AGATTAGATAGTTACCCCCTCCG 58.325 47.826 0.00 0.00 0.00 4.63
6574 6687 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
6578 6691 7.902032 TCCGTAAAGAAATATAAGAGCGTTTG 58.098 34.615 0.00 0.00 0.00 2.93
6589 6702 6.710597 ATAAGAGCGTTTGGATCACTACTA 57.289 37.500 0.00 0.00 32.03 1.82
6590 6703 5.599999 AAGAGCGTTTGGATCACTACTAT 57.400 39.130 0.00 0.00 32.03 2.12
6591 6704 6.710597 AAGAGCGTTTGGATCACTACTATA 57.289 37.500 0.00 0.00 32.03 1.31
6592 6705 6.074544 AGAGCGTTTGGATCACTACTATAC 57.925 41.667 0.00 0.00 32.03 1.47
6593 6706 5.593095 AGAGCGTTTGGATCACTACTATACA 59.407 40.000 0.00 0.00 32.03 2.29
6594 6707 5.833082 AGCGTTTGGATCACTACTATACAG 58.167 41.667 0.00 0.00 0.00 2.74
6595 6708 5.593095 AGCGTTTGGATCACTACTATACAGA 59.407 40.000 0.00 0.00 0.00 3.41
6596 6709 6.265649 AGCGTTTGGATCACTACTATACAGAT 59.734 38.462 0.00 0.00 0.00 2.90
6597 6710 6.363626 GCGTTTGGATCACTACTATACAGATG 59.636 42.308 0.00 0.00 0.00 2.90
6598 6711 6.863645 CGTTTGGATCACTACTATACAGATGG 59.136 42.308 0.00 0.00 0.00 3.51
6599 6712 7.255486 CGTTTGGATCACTACTATACAGATGGA 60.255 40.741 0.00 0.00 0.00 3.41
6600 6713 7.767250 TTGGATCACTACTATACAGATGGAG 57.233 40.000 0.00 0.00 0.00 3.86
6601 6714 6.853490 TGGATCACTACTATACAGATGGAGT 58.147 40.000 0.00 0.00 0.00 3.85
6602 6715 7.985589 TGGATCACTACTATACAGATGGAGTA 58.014 38.462 0.00 0.00 0.00 2.59
6603 6716 7.883833 TGGATCACTACTATACAGATGGAGTAC 59.116 40.741 0.00 0.00 0.00 2.73
6604 6717 8.104566 GGATCACTACTATACAGATGGAGTACT 58.895 40.741 0.00 0.00 0.00 2.73
6605 6718 9.509956 GATCACTACTATACAGATGGAGTACTT 57.490 37.037 0.00 0.00 0.00 2.24
6606 6719 8.678593 TCACTACTATACAGATGGAGTACTTG 57.321 38.462 0.00 0.00 0.00 3.16
6607 6720 7.720074 TCACTACTATACAGATGGAGTACTTGG 59.280 40.741 0.00 0.00 0.00 3.61
6608 6721 7.502895 CACTACTATACAGATGGAGTACTTGGT 59.497 40.741 0.00 0.00 0.00 3.67
6609 6722 8.721479 ACTACTATACAGATGGAGTACTTGGTA 58.279 37.037 0.00 0.00 0.00 3.25
6610 6723 9.570468 CTACTATACAGATGGAGTACTTGGTAA 57.430 37.037 0.00 0.00 0.00 2.85
6616 6729 7.736893 ACAGATGGAGTACTTGGTAATAATCC 58.263 38.462 0.00 0.00 0.00 3.01
6617 6730 7.347222 ACAGATGGAGTACTTGGTAATAATCCA 59.653 37.037 0.00 3.21 39.73 3.41
6618 6731 8.210946 CAGATGGAGTACTTGGTAATAATCCAA 58.789 37.037 0.00 0.00 41.84 3.53
6619 6732 8.211629 AGATGGAGTACTTGGTAATAATCCAAC 58.788 37.037 0.00 2.86 39.62 3.77
6620 6733 6.342906 TGGAGTACTTGGTAATAATCCAACG 58.657 40.000 0.00 0.00 39.62 4.10
6621 6734 5.235831 GGAGTACTTGGTAATAATCCAACGC 59.764 44.000 0.00 0.00 39.62 4.84
6622 6735 5.985911 AGTACTTGGTAATAATCCAACGCT 58.014 37.500 0.00 0.00 39.62 5.07
6623 6736 6.047231 AGTACTTGGTAATAATCCAACGCTC 58.953 40.000 0.00 0.00 39.62 5.03
6624 6737 5.099042 ACTTGGTAATAATCCAACGCTCT 57.901 39.130 0.00 0.00 39.62 4.09
6625 6738 5.497474 ACTTGGTAATAATCCAACGCTCTT 58.503 37.500 0.00 0.00 39.62 2.85
6626 6739 5.354234 ACTTGGTAATAATCCAACGCTCTTG 59.646 40.000 0.00 0.00 39.62 3.02
6627 6740 4.839121 TGGTAATAATCCAACGCTCTTGT 58.161 39.130 0.00 0.00 31.50 3.16
6628 6741 5.979993 TGGTAATAATCCAACGCTCTTGTA 58.020 37.500 0.00 0.00 31.50 2.41
6629 6742 6.408035 TGGTAATAATCCAACGCTCTTGTAA 58.592 36.000 0.00 0.00 31.50 2.41
6630 6743 7.051623 TGGTAATAATCCAACGCTCTTGTAAT 58.948 34.615 0.00 0.00 31.50 1.89
6631 6744 7.011950 TGGTAATAATCCAACGCTCTTGTAATG 59.988 37.037 0.00 0.00 31.50 1.90
6632 6745 6.377327 AATAATCCAACGCTCTTGTAATGG 57.623 37.500 0.00 0.00 0.00 3.16
6633 6746 3.627395 ATCCAACGCTCTTGTAATGGA 57.373 42.857 0.00 0.00 40.90 3.41
6634 6747 2.972625 TCCAACGCTCTTGTAATGGAG 58.027 47.619 0.00 0.00 33.30 3.86
6635 6748 2.565391 TCCAACGCTCTTGTAATGGAGA 59.435 45.455 0.00 0.00 33.30 3.71
6636 6749 2.673368 CCAACGCTCTTGTAATGGAGAC 59.327 50.000 0.00 0.00 0.00 3.36
6637 6750 2.279582 ACGCTCTTGTAATGGAGACG 57.720 50.000 0.00 0.00 36.24 4.18
6638 6751 0.924090 CGCTCTTGTAATGGAGACGC 59.076 55.000 0.00 0.00 0.00 5.19
6639 6752 1.735700 CGCTCTTGTAATGGAGACGCA 60.736 52.381 0.00 0.00 0.00 5.24
6640 6753 2.346803 GCTCTTGTAATGGAGACGCAA 58.653 47.619 0.00 0.00 0.00 4.85
6642 6755 3.849911 CTCTTGTAATGGAGACGCAAGA 58.150 45.455 0.00 0.00 41.89 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.435410 TAGTCAGCTCGCCGTCGA 60.435 61.111 0.00 0.00 43.28 4.20
40 41 2.023461 CTAGTCAGCTCGCCGTCG 59.977 66.667 0.00 0.00 0.00 5.12
41 42 1.353804 CTCTAGTCAGCTCGCCGTC 59.646 63.158 0.00 0.00 0.00 4.79
42 43 2.766400 GCTCTAGTCAGCTCGCCGT 61.766 63.158 0.00 0.00 36.38 5.68
43 44 2.025441 GCTCTAGTCAGCTCGCCG 59.975 66.667 0.00 0.00 36.38 6.46
44 45 2.415426 GGCTCTAGTCAGCTCGCC 59.585 66.667 3.67 0.00 39.58 5.54
45 46 2.025441 CGGCTCTAGTCAGCTCGC 59.975 66.667 3.67 0.00 39.58 5.03
46 47 1.353804 GACGGCTCTAGTCAGCTCG 59.646 63.158 3.67 7.72 39.58 5.03
47 48 1.090625 TCGACGGCTCTAGTCAGCTC 61.091 60.000 3.67 0.00 39.58 4.09
48 49 1.078356 TCGACGGCTCTAGTCAGCT 60.078 57.895 3.67 0.00 39.58 4.24
49 50 1.062845 GTCGACGGCTCTAGTCAGC 59.937 63.158 0.00 0.00 38.46 4.26
50 51 0.375454 CTGTCGACGGCTCTAGTCAG 59.625 60.000 12.25 0.00 38.46 3.51
51 52 0.321387 ACTGTCGACGGCTCTAGTCA 60.321 55.000 24.25 0.00 38.46 3.41
52 53 0.097325 CACTGTCGACGGCTCTAGTC 59.903 60.000 24.25 0.00 35.41 2.59
53 54 0.321387 TCACTGTCGACGGCTCTAGT 60.321 55.000 24.25 11.11 0.00 2.57
54 55 0.375454 CTCACTGTCGACGGCTCTAG 59.625 60.000 24.25 10.43 0.00 2.43
55 56 1.645704 GCTCACTGTCGACGGCTCTA 61.646 60.000 24.25 6.36 0.00 2.43
56 57 2.983930 GCTCACTGTCGACGGCTCT 61.984 63.158 24.25 1.83 0.00 4.09
57 58 2.505118 GCTCACTGTCGACGGCTC 60.505 66.667 24.25 7.11 0.00 4.70
58 59 4.057428 GGCTCACTGTCGACGGCT 62.057 66.667 24.25 8.85 0.00 5.52
64 65 1.517257 GATCACCGGCTCACTGTCG 60.517 63.158 0.00 0.00 44.42 4.35
65 66 1.153549 GGATCACCGGCTCACTGTC 60.154 63.158 0.00 0.00 0.00 3.51
66 67 2.982130 GGATCACCGGCTCACTGT 59.018 61.111 0.00 0.00 0.00 3.55
105 106 4.143333 AATGGTCGGCGGAGGTCG 62.143 66.667 7.21 0.00 44.20 4.79
106 107 2.311688 ATCAATGGTCGGCGGAGGTC 62.312 60.000 7.21 0.00 0.00 3.85
107 108 1.910580 AATCAATGGTCGGCGGAGGT 61.911 55.000 7.21 0.00 0.00 3.85
108 109 0.748005 AAATCAATGGTCGGCGGAGG 60.748 55.000 7.21 0.00 0.00 4.30
109 110 1.948104 TAAATCAATGGTCGGCGGAG 58.052 50.000 7.21 0.00 0.00 4.63
110 111 2.631160 ATAAATCAATGGTCGGCGGA 57.369 45.000 7.21 0.00 0.00 5.54
111 112 4.822036 TTTATAAATCAATGGTCGGCGG 57.178 40.909 7.21 0.00 0.00 6.13
112 113 7.692908 AAAATTTATAAATCAATGGTCGGCG 57.307 32.000 11.08 0.00 0.00 6.46
113 114 9.522804 TGTAAAATTTATAAATCAATGGTCGGC 57.477 29.630 11.08 0.00 0.00 5.54
117 118 9.830975 GGCCTGTAAAATTTATAAATCAATGGT 57.169 29.630 11.08 0.00 0.00 3.55
118 119 8.977505 CGGCCTGTAAAATTTATAAATCAATGG 58.022 33.333 11.08 9.77 0.00 3.16
119 120 8.977505 CCGGCCTGTAAAATTTATAAATCAATG 58.022 33.333 11.08 1.74 0.00 2.82
120 121 8.147704 CCCGGCCTGTAAAATTTATAAATCAAT 58.852 33.333 11.08 3.91 0.00 2.57
121 122 7.493367 CCCGGCCTGTAAAATTTATAAATCAA 58.507 34.615 11.08 0.00 0.00 2.57
122 123 6.461788 GCCCGGCCTGTAAAATTTATAAATCA 60.462 38.462 11.08 4.49 0.00 2.57
123 124 5.924254 GCCCGGCCTGTAAAATTTATAAATC 59.076 40.000 11.08 0.04 0.00 2.17
124 125 5.221561 GGCCCGGCCTGTAAAATTTATAAAT 60.222 40.000 22.31 4.81 46.69 1.40
125 126 4.099727 GGCCCGGCCTGTAAAATTTATAAA 59.900 41.667 22.31 0.00 46.69 1.40
126 127 3.637694 GGCCCGGCCTGTAAAATTTATAA 59.362 43.478 22.31 0.00 46.69 0.98
127 128 3.224269 GGCCCGGCCTGTAAAATTTATA 58.776 45.455 22.31 0.00 46.69 0.98
128 129 2.036387 GGCCCGGCCTGTAAAATTTAT 58.964 47.619 22.31 0.00 46.69 1.40
129 130 1.476477 GGCCCGGCCTGTAAAATTTA 58.524 50.000 22.31 0.00 46.69 1.40
130 131 2.282827 GGCCCGGCCTGTAAAATTT 58.717 52.632 22.31 0.00 46.69 1.82
131 132 4.027884 GGCCCGGCCTGTAAAATT 57.972 55.556 22.31 0.00 46.69 1.82
141 142 1.000843 GATCCATAAAAATGGCCCGGC 59.999 52.381 0.00 0.00 41.43 6.13
142 143 2.297033 CAGATCCATAAAAATGGCCCGG 59.703 50.000 0.00 0.00 41.43 5.73
143 144 2.958355 ACAGATCCATAAAAATGGCCCG 59.042 45.455 0.00 0.00 41.43 6.13
144 145 4.499696 CGAACAGATCCATAAAAATGGCCC 60.500 45.833 0.00 0.00 41.43 5.80
145 146 4.499696 CCGAACAGATCCATAAAAATGGCC 60.500 45.833 0.00 0.00 41.43 5.36
146 147 4.499696 CCCGAACAGATCCATAAAAATGGC 60.500 45.833 0.00 0.00 41.43 4.40
147 148 4.644685 ACCCGAACAGATCCATAAAAATGG 59.355 41.667 0.00 0.00 43.01 3.16
148 149 5.835113 ACCCGAACAGATCCATAAAAATG 57.165 39.130 0.00 0.00 0.00 2.32
149 150 7.948034 TTTACCCGAACAGATCCATAAAAAT 57.052 32.000 0.00 0.00 0.00 1.82
150 151 7.762588 TTTTACCCGAACAGATCCATAAAAA 57.237 32.000 0.00 0.00 0.00 1.94
151 152 7.762588 TTTTTACCCGAACAGATCCATAAAA 57.237 32.000 0.00 0.00 0.00 1.52
173 174 8.671028 TCTAAGACGTTTTACTGCTTTCTTTTT 58.329 29.630 0.00 0.00 0.00 1.94
174 175 8.205131 TCTAAGACGTTTTACTGCTTTCTTTT 57.795 30.769 0.00 0.00 0.00 2.27
175 176 7.709613 TCTCTAAGACGTTTTACTGCTTTCTTT 59.290 33.333 0.00 0.00 0.00 2.52
176 177 7.208080 TCTCTAAGACGTTTTACTGCTTTCTT 58.792 34.615 0.00 0.00 0.00 2.52
177 178 6.746120 TCTCTAAGACGTTTTACTGCTTTCT 58.254 36.000 0.00 0.00 0.00 2.52
178 179 7.404139 TTCTCTAAGACGTTTTACTGCTTTC 57.596 36.000 0.00 0.00 0.00 2.62
179 180 7.781548 TTTCTCTAAGACGTTTTACTGCTTT 57.218 32.000 0.00 0.00 0.00 3.51
180 181 7.781548 TTTTCTCTAAGACGTTTTACTGCTT 57.218 32.000 0.00 0.00 0.00 3.91
181 182 7.964604 ATTTTCTCTAAGACGTTTTACTGCT 57.035 32.000 0.00 0.00 0.00 4.24
189 190 9.713740 CGTACAGTATATTTTCTCTAAGACGTT 57.286 33.333 0.00 0.00 0.00 3.99
190 191 9.102757 TCGTACAGTATATTTTCTCTAAGACGT 57.897 33.333 0.00 0.00 0.00 4.34
191 192 9.926751 TTCGTACAGTATATTTTCTCTAAGACG 57.073 33.333 0.00 0.00 0.00 4.18
208 209 9.617975 GAAAATTGTACTACTACTTCGTACAGT 57.382 33.333 0.00 0.00 42.83 3.55
209 210 9.616634 TGAAAATTGTACTACTACTTCGTACAG 57.383 33.333 0.00 0.00 42.83 2.74
365 370 2.677228 GTGTGAGATGGGGGTGGG 59.323 66.667 0.00 0.00 0.00 4.61
600 608 2.119029 GGCGGGAAAGGAATTCGGG 61.119 63.158 0.00 0.00 39.05 5.14
671 679 9.449719 GAGGACGAACCCAATAATAATAATGAT 57.550 33.333 0.00 0.00 40.05 2.45
673 681 8.848474 AGAGGACGAACCCAATAATAATAATG 57.152 34.615 0.00 0.00 40.05 1.90
676 684 8.258850 AGAAGAGGACGAACCCAATAATAATA 57.741 34.615 0.00 0.00 40.05 0.98
813 825 1.416030 AGGTGATTTGCCCAACCAAAC 59.584 47.619 0.00 0.00 37.51 2.93
901 913 0.035056 CCTCAAGAACGCCCAAGGAT 60.035 55.000 0.00 0.00 0.00 3.24
907 919 3.056328 GGCACCTCAAGAACGCCC 61.056 66.667 0.00 0.00 36.73 6.13
910 922 1.084370 GGATCGGCACCTCAAGAACG 61.084 60.000 0.00 0.00 0.00 3.95
1184 1207 5.710513 TGCAATGCAAGACAGAATAACTT 57.289 34.783 5.01 0.00 34.76 2.66
1208 1231 3.858247 AGACGCGCCTTTTCTTAACTAT 58.142 40.909 5.73 0.00 0.00 2.12
1209 1232 3.308438 AGACGCGCCTTTTCTTAACTA 57.692 42.857 5.73 0.00 0.00 2.24
1227 1250 3.701205 TTTTGCTGTCATGAGCCTAGA 57.299 42.857 0.00 0.00 38.28 2.43
1237 1260 2.205022 AGCTAGGCATTTTGCTGTCA 57.795 45.000 0.00 0.00 44.28 3.58
1240 1263 4.269363 GCAATTAAGCTAGGCATTTTGCTG 59.731 41.667 0.00 0.00 44.28 4.41
1260 1283 1.538950 TGATGCACACATTAAGCGCAA 59.461 42.857 11.47 0.00 36.35 4.85
1275 1308 2.518949 CACGGTTAAGCACAATGATGC 58.481 47.619 5.38 0.00 46.50 3.91
1276 1309 2.518949 GCACGGTTAAGCACAATGATG 58.481 47.619 5.38 0.00 0.00 3.07
1277 1310 1.130373 CGCACGGTTAAGCACAATGAT 59.870 47.619 5.38 0.00 0.00 2.45
1278 1311 0.515127 CGCACGGTTAAGCACAATGA 59.485 50.000 5.38 0.00 0.00 2.57
1279 1312 1.065031 GCGCACGGTTAAGCACAATG 61.065 55.000 0.30 0.00 0.00 2.82
1280 1313 1.209127 GCGCACGGTTAAGCACAAT 59.791 52.632 0.30 0.00 0.00 2.71
1281 1314 1.837538 GAGCGCACGGTTAAGCACAA 61.838 55.000 11.47 0.00 0.00 3.33
1282 1315 2.280524 AGCGCACGGTTAAGCACA 60.281 55.556 11.47 0.00 0.00 4.57
1283 1316 2.027625 AGAGCGCACGGTTAAGCAC 61.028 57.895 11.47 0.00 0.00 4.40
1284 1317 2.027073 CAGAGCGCACGGTTAAGCA 61.027 57.895 11.47 0.00 0.00 3.91
1285 1318 2.740714 CCAGAGCGCACGGTTAAGC 61.741 63.158 11.47 0.00 0.00 3.09
1286 1319 0.108992 TACCAGAGCGCACGGTTAAG 60.109 55.000 21.25 2.77 34.12 1.85
1287 1320 0.317799 TTACCAGAGCGCACGGTTAA 59.682 50.000 21.25 8.45 34.12 2.01
1288 1321 0.108992 CTTACCAGAGCGCACGGTTA 60.109 55.000 21.25 14.05 34.12 2.85
1289 1322 1.374252 CTTACCAGAGCGCACGGTT 60.374 57.895 21.25 3.67 34.12 4.44
1290 1323 1.812686 TTCTTACCAGAGCGCACGGT 61.813 55.000 20.31 20.31 36.79 4.83
1291 1324 0.669318 TTTCTTACCAGAGCGCACGG 60.669 55.000 11.47 12.09 0.00 4.94
1313 1346 1.109920 TAAAAAGCCACCGCCTTGCA 61.110 50.000 0.00 0.00 34.57 4.08
1318 1351 0.317160 AAAGCTAAAAAGCCACCGCC 59.683 50.000 0.00 0.00 34.57 6.13
1321 1354 3.130633 CCAACAAAGCTAAAAAGCCACC 58.869 45.455 0.00 0.00 34.90 4.61
1333 1366 8.903820 ACCTAAATAATCTATCACCAACAAAGC 58.096 33.333 0.00 0.00 0.00 3.51
1341 1374 7.116519 GCGAGTGAACCTAAATAATCTATCACC 59.883 40.741 0.00 0.00 37.29 4.02
1342 1375 7.652105 TGCGAGTGAACCTAAATAATCTATCAC 59.348 37.037 0.00 0.00 36.95 3.06
1343 1376 7.722363 TGCGAGTGAACCTAAATAATCTATCA 58.278 34.615 0.00 0.00 0.00 2.15
1344 1377 8.589335 TTGCGAGTGAACCTAAATAATCTATC 57.411 34.615 0.00 0.00 0.00 2.08
1345 1378 9.561069 AATTGCGAGTGAACCTAAATAATCTAT 57.439 29.630 0.00 0.00 0.00 1.98
1346 1379 8.958119 AATTGCGAGTGAACCTAAATAATCTA 57.042 30.769 0.00 0.00 0.00 1.98
1347 1380 7.865706 AATTGCGAGTGAACCTAAATAATCT 57.134 32.000 0.00 0.00 0.00 2.40
1348 1381 8.911247 AAAATTGCGAGTGAACCTAAATAATC 57.089 30.769 0.00 0.00 0.00 1.75
1391 1424 8.852135 CCCTGACACTAAACAAATTTAACCTAA 58.148 33.333 0.00 0.00 29.82 2.69
1392 1425 8.219178 TCCCTGACACTAAACAAATTTAACCTA 58.781 33.333 0.00 0.00 29.82 3.08
1393 1426 7.064229 TCCCTGACACTAAACAAATTTAACCT 58.936 34.615 0.00 0.00 29.82 3.50
1394 1427 7.279750 TCCCTGACACTAAACAAATTTAACC 57.720 36.000 0.00 0.00 29.82 2.85
1395 1428 9.244799 CTTTCCCTGACACTAAACAAATTTAAC 57.755 33.333 0.00 0.00 29.82 2.01
1396 1429 8.973182 ACTTTCCCTGACACTAAACAAATTTAA 58.027 29.630 0.00 0.00 29.82 1.52
1397 1430 8.528044 ACTTTCCCTGACACTAAACAAATTTA 57.472 30.769 0.00 0.00 0.00 1.40
1398 1431 7.418337 ACTTTCCCTGACACTAAACAAATTT 57.582 32.000 0.00 0.00 0.00 1.82
1399 1432 8.528044 TTACTTTCCCTGACACTAAACAAATT 57.472 30.769 0.00 0.00 0.00 1.82
1400 1433 8.528044 TTTACTTTCCCTGACACTAAACAAAT 57.472 30.769 0.00 0.00 0.00 2.32
1401 1434 7.941431 TTTACTTTCCCTGACACTAAACAAA 57.059 32.000 0.00 0.00 0.00 2.83
1402 1435 7.776030 TGATTTACTTTCCCTGACACTAAACAA 59.224 33.333 0.00 0.00 0.00 2.83
1403 1436 7.284074 TGATTTACTTTCCCTGACACTAAACA 58.716 34.615 0.00 0.00 0.00 2.83
1404 1437 7.739498 TGATTTACTTTCCCTGACACTAAAC 57.261 36.000 0.00 0.00 0.00 2.01
1405 1438 8.215050 TCTTGATTTACTTTCCCTGACACTAAA 58.785 33.333 0.00 0.00 0.00 1.85
1406 1439 7.741785 TCTTGATTTACTTTCCCTGACACTAA 58.258 34.615 0.00 0.00 0.00 2.24
1407 1440 7.311092 TCTTGATTTACTTTCCCTGACACTA 57.689 36.000 0.00 0.00 0.00 2.74
1408 1441 6.187727 TCTTGATTTACTTTCCCTGACACT 57.812 37.500 0.00 0.00 0.00 3.55
1409 1442 7.391833 AGAATCTTGATTTACTTTCCCTGACAC 59.608 37.037 0.00 0.00 0.00 3.67
1410 1443 7.391554 CAGAATCTTGATTTACTTTCCCTGACA 59.608 37.037 0.00 0.00 0.00 3.58
1411 1444 7.391833 ACAGAATCTTGATTTACTTTCCCTGAC 59.608 37.037 0.00 0.00 0.00 3.51
1412 1445 7.391554 CACAGAATCTTGATTTACTTTCCCTGA 59.608 37.037 0.00 0.00 0.00 3.86
1413 1446 7.362401 CCACAGAATCTTGATTTACTTTCCCTG 60.362 40.741 0.00 0.00 0.00 4.45
1414 1447 6.660949 CCACAGAATCTTGATTTACTTTCCCT 59.339 38.462 0.00 0.00 0.00 4.20
1415 1448 6.434340 ACCACAGAATCTTGATTTACTTTCCC 59.566 38.462 0.00 0.00 0.00 3.97
1416 1449 7.454260 ACCACAGAATCTTGATTTACTTTCC 57.546 36.000 0.00 0.00 0.00 3.13
1417 1450 7.095187 ACGACCACAGAATCTTGATTTACTTTC 60.095 37.037 0.00 0.00 0.00 2.62
1418 1451 6.710744 ACGACCACAGAATCTTGATTTACTTT 59.289 34.615 0.00 0.00 0.00 2.66
1419 1452 6.231211 ACGACCACAGAATCTTGATTTACTT 58.769 36.000 0.00 0.00 0.00 2.24
1420 1453 5.794894 ACGACCACAGAATCTTGATTTACT 58.205 37.500 0.00 0.00 0.00 2.24
1421 1454 5.220228 CGACGACCACAGAATCTTGATTTAC 60.220 44.000 0.00 0.00 0.00 2.01
1422 1455 4.862574 CGACGACCACAGAATCTTGATTTA 59.137 41.667 0.00 0.00 0.00 1.40
1423 1456 3.679980 CGACGACCACAGAATCTTGATTT 59.320 43.478 0.00 0.00 0.00 2.17
1424 1457 3.254060 CGACGACCACAGAATCTTGATT 58.746 45.455 0.00 0.00 0.00 2.57
1425 1458 2.417379 CCGACGACCACAGAATCTTGAT 60.417 50.000 0.00 0.00 0.00 2.57
1426 1459 1.067846 CCGACGACCACAGAATCTTGA 60.068 52.381 0.00 0.00 0.00 3.02
1427 1460 1.336887 ACCGACGACCACAGAATCTTG 60.337 52.381 0.00 0.00 0.00 3.02
1428 1461 0.966920 ACCGACGACCACAGAATCTT 59.033 50.000 0.00 0.00 0.00 2.40
1429 1462 0.243907 CACCGACGACCACAGAATCT 59.756 55.000 0.00 0.00 0.00 2.40
1430 1463 0.736325 CCACCGACGACCACAGAATC 60.736 60.000 0.00 0.00 0.00 2.52
1431 1464 1.183030 TCCACCGACGACCACAGAAT 61.183 55.000 0.00 0.00 0.00 2.40
1432 1465 1.393487 TTCCACCGACGACCACAGAA 61.393 55.000 0.00 0.00 0.00 3.02
1433 1466 1.183030 ATTCCACCGACGACCACAGA 61.183 55.000 0.00 0.00 0.00 3.41
1434 1467 0.528924 TATTCCACCGACGACCACAG 59.471 55.000 0.00 0.00 0.00 3.66
1435 1468 0.967662 TTATTCCACCGACGACCACA 59.032 50.000 0.00 0.00 0.00 4.17
1436 1469 1.931172 CATTATTCCACCGACGACCAC 59.069 52.381 0.00 0.00 0.00 4.16
1437 1470 1.826096 TCATTATTCCACCGACGACCA 59.174 47.619 0.00 0.00 0.00 4.02
1438 1471 2.199236 GTCATTATTCCACCGACGACC 58.801 52.381 0.00 0.00 0.00 4.79
1439 1472 2.601763 GTGTCATTATTCCACCGACGAC 59.398 50.000 0.00 0.00 0.00 4.34
1440 1473 2.494471 AGTGTCATTATTCCACCGACGA 59.506 45.455 0.00 0.00 0.00 4.20
1441 1474 2.888594 AGTGTCATTATTCCACCGACG 58.111 47.619 0.00 0.00 0.00 5.12
1442 1475 5.007385 AGTAGTGTCATTATTCCACCGAC 57.993 43.478 0.00 0.00 0.00 4.79
1443 1476 4.707934 TGAGTAGTGTCATTATTCCACCGA 59.292 41.667 0.00 0.00 0.00 4.69
1444 1477 5.006153 TGAGTAGTGTCATTATTCCACCG 57.994 43.478 0.00 0.00 0.00 4.94
1445 1478 5.237344 GCATGAGTAGTGTCATTATTCCACC 59.763 44.000 0.00 0.00 34.81 4.61
1446 1479 6.051717 AGCATGAGTAGTGTCATTATTCCAC 58.948 40.000 0.00 0.00 34.81 4.02
1447 1480 6.239217 AGCATGAGTAGTGTCATTATTCCA 57.761 37.500 0.00 0.00 34.81 3.53
1448 1481 6.540189 ACAAGCATGAGTAGTGTCATTATTCC 59.460 38.462 0.00 0.00 34.81 3.01
1449 1482 7.545362 ACAAGCATGAGTAGTGTCATTATTC 57.455 36.000 0.00 0.00 34.81 1.75
1450 1483 9.618890 AATACAAGCATGAGTAGTGTCATTATT 57.381 29.630 0.00 0.00 34.81 1.40
1451 1484 9.265901 GAATACAAGCATGAGTAGTGTCATTAT 57.734 33.333 0.00 0.00 34.81 1.28
1452 1485 7.435192 CGAATACAAGCATGAGTAGTGTCATTA 59.565 37.037 0.00 0.00 34.81 1.90
1453 1486 6.256539 CGAATACAAGCATGAGTAGTGTCATT 59.743 38.462 0.00 0.00 34.81 2.57
1454 1487 5.750547 CGAATACAAGCATGAGTAGTGTCAT 59.249 40.000 0.00 0.00 37.68 3.06
1455 1488 5.102313 CGAATACAAGCATGAGTAGTGTCA 58.898 41.667 0.00 0.00 0.00 3.58
1456 1489 4.504461 CCGAATACAAGCATGAGTAGTGTC 59.496 45.833 0.00 0.00 0.00 3.67
1457 1490 4.081642 ACCGAATACAAGCATGAGTAGTGT 60.082 41.667 0.00 0.00 0.00 3.55
1458 1491 4.433615 ACCGAATACAAGCATGAGTAGTG 58.566 43.478 0.00 0.00 0.00 2.74
1459 1492 4.402793 AGACCGAATACAAGCATGAGTAGT 59.597 41.667 0.00 0.00 0.00 2.73
1460 1493 4.938080 AGACCGAATACAAGCATGAGTAG 58.062 43.478 0.00 0.00 0.00 2.57
1461 1494 5.358725 TGTAGACCGAATACAAGCATGAGTA 59.641 40.000 0.00 0.00 30.37 2.59
1462 1495 3.895232 AGACCGAATACAAGCATGAGT 57.105 42.857 0.00 0.00 0.00 3.41
1463 1496 4.682787 TGTAGACCGAATACAAGCATGAG 58.317 43.478 0.00 0.00 30.37 2.90
1464 1497 4.682787 CTGTAGACCGAATACAAGCATGA 58.317 43.478 0.00 0.00 32.96 3.07
1465 1498 3.246226 GCTGTAGACCGAATACAAGCATG 59.754 47.826 0.00 0.00 32.96 4.06
1466 1499 3.458189 GCTGTAGACCGAATACAAGCAT 58.542 45.455 0.00 0.00 32.96 3.79
1467 1500 2.418197 GGCTGTAGACCGAATACAAGCA 60.418 50.000 0.00 0.00 32.96 3.91
1468 1501 2.159085 AGGCTGTAGACCGAATACAAGC 60.159 50.000 0.00 0.00 32.96 4.01
1469 1502 3.802948 AGGCTGTAGACCGAATACAAG 57.197 47.619 0.00 0.00 32.96 3.16
1470 1503 4.439153 CGTAAGGCTGTAGACCGAATACAA 60.439 45.833 0.00 0.00 32.96 2.41
1471 1504 3.065786 CGTAAGGCTGTAGACCGAATACA 59.934 47.826 0.00 0.00 0.00 2.29
1472 1505 3.625938 CGTAAGGCTGTAGACCGAATAC 58.374 50.000 0.00 0.00 0.00 1.89
1473 1506 3.976793 CGTAAGGCTGTAGACCGAATA 57.023 47.619 0.00 0.00 0.00 1.75
1474 1507 2.865343 CGTAAGGCTGTAGACCGAAT 57.135 50.000 0.00 0.00 0.00 3.34
1488 1521 4.261031 GGCATTATGGCTTGTTACCGTAAG 60.261 45.833 11.66 0.00 40.94 2.34
1489 1522 3.628487 GGCATTATGGCTTGTTACCGTAA 59.372 43.478 11.66 0.00 41.64 3.18
1490 1523 3.207778 GGCATTATGGCTTGTTACCGTA 58.792 45.455 11.66 0.00 40.14 4.02
1491 1524 2.021457 GGCATTATGGCTTGTTACCGT 58.979 47.619 11.66 0.00 40.14 4.83
1492 1525 1.002900 CGGCATTATGGCTTGTTACCG 60.003 52.381 16.50 3.47 41.25 4.02
1493 1526 1.336755 CCGGCATTATGGCTTGTTACC 59.663 52.381 16.50 0.00 41.25 2.85
1494 1527 1.336755 CCCGGCATTATGGCTTGTTAC 59.663 52.381 16.50 0.00 41.25 2.50
1495 1528 1.686355 CCCGGCATTATGGCTTGTTA 58.314 50.000 16.50 0.00 41.25 2.41
1496 1529 1.675720 GCCCGGCATTATGGCTTGTT 61.676 55.000 16.50 0.00 41.25 2.83
1497 1530 2.127232 GCCCGGCATTATGGCTTGT 61.127 57.895 16.50 0.00 41.25 3.16
1498 1531 2.730094 GCCCGGCATTATGGCTTG 59.270 61.111 16.50 8.36 41.25 4.01
1501 1534 1.971695 GGTAGCCCGGCATTATGGC 60.972 63.158 13.15 8.82 45.70 4.40
1502 1535 0.606401 CAGGTAGCCCGGCATTATGG 60.606 60.000 13.15 0.00 35.12 2.74
1503 1536 2.932663 CAGGTAGCCCGGCATTATG 58.067 57.895 13.15 1.12 35.12 1.90
1510 1543 2.058595 AGTACTGCAGGTAGCCCGG 61.059 63.158 19.93 0.00 44.83 5.73
1511 1544 1.141881 CAGTACTGCAGGTAGCCCG 59.858 63.158 19.93 0.00 44.83 6.13
1512 1545 1.123928 ATCAGTACTGCAGGTAGCCC 58.876 55.000 19.93 0.00 44.83 5.19
1513 1546 1.808133 GCATCAGTACTGCAGGTAGCC 60.808 57.143 19.93 0.37 44.83 3.93
1514 1547 1.134699 TGCATCAGTACTGCAGGTAGC 60.135 52.381 19.93 14.11 44.30 3.58
1515 1548 2.967599 TGCATCAGTACTGCAGGTAG 57.032 50.000 19.93 5.01 44.30 3.18
1520 1553 1.271001 ACTTGCTGCATCAGTACTGCA 60.271 47.619 18.45 12.69 46.82 4.41
1521 1554 1.129998 CACTTGCTGCATCAGTACTGC 59.870 52.381 18.45 8.33 40.10 4.40
1522 1555 1.129998 GCACTTGCTGCATCAGTACTG 59.870 52.381 17.17 17.17 46.29 2.74
1523 1556 1.446907 GCACTTGCTGCATCAGTACT 58.553 50.000 1.84 0.00 46.29 2.73
1524 1557 3.984292 GCACTTGCTGCATCAGTAC 57.016 52.632 1.84 0.00 46.29 2.73
1533 1566 6.250913 ACAGTAGTGTCTTTAGCACTTGCTG 61.251 44.000 14.14 18.54 43.87 4.41
1534 1567 4.202264 ACAGTAGTGTCTTTAGCACTTGCT 60.202 41.667 9.09 9.09 43.87 3.91
1535 1568 4.058817 ACAGTAGTGTCTTTAGCACTTGC 58.941 43.478 0.00 0.00 43.87 4.01
1548 1581 4.202223 ACACAAGGAAATCGACAGTAGTGT 60.202 41.667 1.90 1.90 40.71 3.55
1549 1582 4.150627 CACACAAGGAAATCGACAGTAGTG 59.849 45.833 0.00 0.00 0.00 2.74
1550 1583 4.038763 TCACACAAGGAAATCGACAGTAGT 59.961 41.667 0.00 0.00 0.00 2.73
1551 1584 4.556233 TCACACAAGGAAATCGACAGTAG 58.444 43.478 0.00 0.00 0.00 2.57
1552 1585 4.594123 TCACACAAGGAAATCGACAGTA 57.406 40.909 0.00 0.00 0.00 2.74
1553 1586 3.469008 TCACACAAGGAAATCGACAGT 57.531 42.857 0.00 0.00 0.00 3.55
1554 1587 4.929211 TGTATCACACAAGGAAATCGACAG 59.071 41.667 0.00 0.00 32.95 3.51
1555 1588 4.888917 TGTATCACACAAGGAAATCGACA 58.111 39.130 0.00 0.00 32.95 4.35
1570 1603 5.118990 ACAAGATAGTGGCATGTGTATCAC 58.881 41.667 0.00 0.00 34.56 3.06
1571 1604 5.357742 ACAAGATAGTGGCATGTGTATCA 57.642 39.130 0.00 0.00 0.00 2.15
1572 1605 6.516718 AGTACAAGATAGTGGCATGTGTATC 58.483 40.000 0.00 0.00 0.00 2.24
1573 1606 6.463049 GGAGTACAAGATAGTGGCATGTGTAT 60.463 42.308 0.00 0.00 0.00 2.29
1574 1607 5.163447 GGAGTACAAGATAGTGGCATGTGTA 60.163 44.000 0.00 0.00 0.00 2.90
1575 1608 4.383118 GGAGTACAAGATAGTGGCATGTGT 60.383 45.833 0.00 0.00 0.00 3.72
1576 1609 4.122776 GGAGTACAAGATAGTGGCATGTG 58.877 47.826 0.00 0.00 0.00 3.21
1577 1610 3.774766 TGGAGTACAAGATAGTGGCATGT 59.225 43.478 0.00 0.00 0.00 3.21
1578 1611 4.406648 TGGAGTACAAGATAGTGGCATG 57.593 45.455 0.00 0.00 0.00 4.06
1579 1612 5.435686 TTTGGAGTACAAGATAGTGGCAT 57.564 39.130 0.00 0.00 40.82 4.40
1580 1613 4.901197 TTTGGAGTACAAGATAGTGGCA 57.099 40.909 0.00 0.00 40.82 4.92
1581 1614 5.066505 CCATTTTGGAGTACAAGATAGTGGC 59.933 44.000 0.00 0.00 40.96 5.01
1582 1615 6.414732 TCCATTTTGGAGTACAAGATAGTGG 58.585 40.000 0.00 0.00 42.67 4.00
1596 1629 3.133721 CACAAAACCCACTCCATTTTGGA 59.866 43.478 11.96 0.00 45.98 3.53
1597 1630 3.118445 ACACAAAACCCACTCCATTTTGG 60.118 43.478 11.96 0.00 44.12 3.28
1598 1631 4.119136 GACACAAAACCCACTCCATTTTG 58.881 43.478 7.04 7.04 44.93 2.44
1599 1632 4.030216 AGACACAAAACCCACTCCATTTT 58.970 39.130 0.00 0.00 0.00 1.82
1600 1633 3.636764 GAGACACAAAACCCACTCCATTT 59.363 43.478 0.00 0.00 0.00 2.32
1601 1634 3.222603 GAGACACAAAACCCACTCCATT 58.777 45.455 0.00 0.00 0.00 3.16
1602 1635 2.174639 TGAGACACAAAACCCACTCCAT 59.825 45.455 0.00 0.00 0.00 3.41
1603 1636 1.562008 TGAGACACAAAACCCACTCCA 59.438 47.619 0.00 0.00 0.00 3.86
1604 1637 2.341846 TGAGACACAAAACCCACTCC 57.658 50.000 0.00 0.00 0.00 3.85
1605 1638 3.541632 TCTTGAGACACAAAACCCACTC 58.458 45.455 0.00 0.00 38.08 3.51
1606 1639 3.199946 TCTCTTGAGACACAAAACCCACT 59.800 43.478 0.00 0.00 38.08 4.00
1607 1640 3.541632 TCTCTTGAGACACAAAACCCAC 58.458 45.455 0.00 0.00 38.08 4.61
1608 1641 3.924114 TCTCTTGAGACACAAAACCCA 57.076 42.857 0.00 0.00 38.08 4.51
1609 1642 5.774498 AATTCTCTTGAGACACAAAACCC 57.226 39.130 0.00 0.00 38.08 4.11
1610 1643 7.032377 AGAAATTCTCTTGAGACACAAAACC 57.968 36.000 0.00 0.00 38.08 3.27
1664 1697 9.716531 GTCAGGTTTCATGATAGATGATGAATA 57.283 33.333 5.41 0.00 39.50 1.75
1665 1698 8.438373 AGTCAGGTTTCATGATAGATGATGAAT 58.562 33.333 5.41 0.00 39.50 2.57
1666 1699 7.799081 AGTCAGGTTTCATGATAGATGATGAA 58.201 34.615 0.00 0.86 38.36 2.57
1667 1700 7.370905 AGTCAGGTTTCATGATAGATGATGA 57.629 36.000 0.00 0.00 0.00 2.92
1668 1701 8.366401 ACTAGTCAGGTTTCATGATAGATGATG 58.634 37.037 0.00 0.00 0.00 3.07
1669 1702 8.489676 ACTAGTCAGGTTTCATGATAGATGAT 57.510 34.615 0.00 0.00 0.00 2.45
1670 1703 7.904558 ACTAGTCAGGTTTCATGATAGATGA 57.095 36.000 0.00 0.00 0.00 2.92
1673 1706 9.031537 TGTTAACTAGTCAGGTTTCATGATAGA 57.968 33.333 7.22 0.00 0.00 1.98
1674 1707 9.823647 ATGTTAACTAGTCAGGTTTCATGATAG 57.176 33.333 7.22 0.00 0.00 2.08
1676 1709 9.823647 CTATGTTAACTAGTCAGGTTTCATGAT 57.176 33.333 7.22 0.00 0.00 2.45
1677 1710 8.812972 ACTATGTTAACTAGTCAGGTTTCATGA 58.187 33.333 7.22 0.00 0.00 3.07
1711 1744 8.454106 GCATAGACAAAAGACATAAGACATTGT 58.546 33.333 0.00 0.00 32.68 2.71
1712 1745 8.671921 AGCATAGACAAAAGACATAAGACATTG 58.328 33.333 0.00 0.00 0.00 2.82
1722 1755 6.712095 AGTTTCATGAGCATAGACAAAAGACA 59.288 34.615 0.00 0.00 0.00 3.41
1729 1762 9.719355 TTTTACTTAGTTTCATGAGCATAGACA 57.281 29.630 0.00 0.00 0.00 3.41
1757 1790 6.095021 TGCTACTGATTAGTTGTAGTCGTCAT 59.905 38.462 0.00 0.00 38.36 3.06
1758 1791 5.413523 TGCTACTGATTAGTTGTAGTCGTCA 59.586 40.000 0.00 0.00 38.36 4.35
1759 1792 5.877031 TGCTACTGATTAGTTGTAGTCGTC 58.123 41.667 0.00 0.00 38.36 4.20
1760 1793 5.892160 TGCTACTGATTAGTTGTAGTCGT 57.108 39.130 0.00 0.00 38.36 4.34
1761 1794 6.495706 TGATGCTACTGATTAGTTGTAGTCG 58.504 40.000 0.00 0.00 38.36 4.18
1765 1798 8.424133 ACATGATGATGCTACTGATTAGTTGTA 58.576 33.333 0.00 0.00 34.14 2.41
1767 1800 7.725818 ACATGATGATGCTACTGATTAGTTG 57.274 36.000 0.00 0.00 34.14 3.16
1772 1805 6.589135 TGAGAACATGATGATGCTACTGATT 58.411 36.000 0.00 0.00 32.14 2.57
1789 1828 4.623932 AAGTAGCAACAGGATGAGAACA 57.376 40.909 0.00 0.00 39.69 3.18
1819 1860 6.404293 GGTGTGATGGTAAAAACGCTATTGAT 60.404 38.462 0.00 0.00 0.00 2.57
1821 1862 5.092781 GGTGTGATGGTAAAAACGCTATTG 58.907 41.667 0.00 0.00 0.00 1.90
1823 1864 4.328536 TGGTGTGATGGTAAAAACGCTAT 58.671 39.130 0.00 0.00 0.00 2.97
1834 1875 1.886222 CGGGTGAAATGGTGTGATGGT 60.886 52.381 0.00 0.00 0.00 3.55
1845 1886 2.984435 AAAACCTACCCGGGTGAAAT 57.016 45.000 36.97 16.92 39.85 2.17
1891 1932 7.891183 TCCTAGAAATTGGCAAGGTTTACATAA 59.109 33.333 5.96 0.00 0.00 1.90
1897 1940 6.686484 AATTCCTAGAAATTGGCAAGGTTT 57.314 33.333 5.96 1.92 0.00 3.27
1898 1941 6.686484 AAATTCCTAGAAATTGGCAAGGTT 57.314 33.333 5.96 2.06 0.00 3.50
1957 2000 2.716424 ACTTGATGGTTCTTGGGAAGGA 59.284 45.455 0.00 0.00 31.46 3.36
1963 2006 2.227388 GTCAGCACTTGATGGTTCTTGG 59.773 50.000 0.00 0.00 36.72 3.61
2043 2086 4.142337 CCTGAGTGCAATGCAATGTATGAA 60.142 41.667 14.44 0.00 41.47 2.57
2046 2089 3.129813 CACCTGAGTGCAATGCAATGTAT 59.870 43.478 14.44 0.00 41.47 2.29
2058 2101 3.129287 CCATAATTGTTCCACCTGAGTGC 59.871 47.826 0.00 0.00 43.09 4.40
2236 2279 1.281199 TATGCCCAGAGCCATGTGGT 61.281 55.000 0.35 0.00 42.71 4.16
2294 2337 8.133627 CAGTTTGAAATTATAGGAATCTGGCAG 58.866 37.037 8.58 8.58 0.00 4.85
2408 2451 3.322254 TCTGCTTCGGAAGAGAAAAGAGT 59.678 43.478 21.45 0.00 43.69 3.24
2409 2452 3.919216 TCTGCTTCGGAAGAGAAAAGAG 58.081 45.455 21.45 4.96 43.69 2.85
2433 2476 0.592754 GCTAACAGCTAGCGGACGAG 60.593 60.000 22.16 14.69 43.64 4.18
2446 2489 9.838339 TTTCCCAAAGAAATTTTTATGCTAACA 57.162 25.926 0.00 0.00 39.60 2.41
2611 2654 1.202604 ACACCACCTGTTAGTTCACCG 60.203 52.381 0.00 0.00 0.00 4.94
2676 2719 6.687105 GCACGCAAAGGAATAAATACAAGTAG 59.313 38.462 0.00 0.00 0.00 2.57
2940 2983 2.746277 CTTCTCGGGTTTGGCCGG 60.746 66.667 0.00 0.00 38.44 6.13
3061 3104 0.465460 TTCACCTGGTGCTGGTTCAC 60.465 55.000 22.02 0.00 33.44 3.18
3062 3105 0.465460 GTTCACCTGGTGCTGGTTCA 60.465 55.000 22.02 0.00 33.44 3.18
3063 3106 1.172812 GGTTCACCTGGTGCTGGTTC 61.173 60.000 22.02 7.81 33.44 3.62
3064 3107 1.152756 GGTTCACCTGGTGCTGGTT 60.153 57.895 22.02 0.00 33.44 3.67
3065 3108 2.343475 CTGGTTCACCTGGTGCTGGT 62.343 60.000 22.02 0.00 36.11 4.00
3066 3109 1.601759 CTGGTTCACCTGGTGCTGG 60.602 63.158 22.02 6.37 36.82 4.85
3067 3110 2.263741 GCTGGTTCACCTGGTGCTG 61.264 63.158 22.02 12.62 35.73 4.41
3068 3111 2.113986 GCTGGTTCACCTGGTGCT 59.886 61.111 22.02 0.00 35.73 4.40
3069 3112 2.203337 TGCTGGTTCACCTGGTGC 60.203 61.111 22.02 9.71 35.73 5.01
3123 3178 4.960866 TGCTGCTGGTGCACCTGG 62.961 66.667 35.22 27.54 45.31 4.45
3132 3187 4.275508 ACCTGGTGGTGCTGCTGG 62.276 66.667 0.00 0.00 46.51 4.85
3141 3196 4.584518 TGCTGGTGCACCTGGTGG 62.585 66.667 35.22 21.31 45.31 4.61
3182 3237 4.974721 CCTGGTGGTGGTGGTGGC 62.975 72.222 0.00 0.00 0.00 5.01
3621 3706 1.971695 CCGGTCCACCAGCTTTTCC 60.972 63.158 0.00 0.00 35.14 3.13
3622 3707 1.971695 CCCGGTCCACCAGCTTTTC 60.972 63.158 0.00 0.00 35.14 2.29
3660 3745 2.690653 TTTCTTGGACCACCGGGCAG 62.691 60.000 6.32 0.00 39.42 4.85
3709 3794 2.979197 GCAACAGGAGCTGCAGCAG 61.979 63.158 38.24 25.90 45.16 4.24
3710 3795 2.981909 GCAACAGGAGCTGCAGCA 60.982 61.111 38.24 0.00 45.16 4.41
3711 3796 2.981909 TGCAACAGGAGCTGCAGC 60.982 61.111 31.53 31.53 41.57 5.25
4046 4131 7.171653 GCCTTTTTAGCATCTAGGATCCTAAT 58.828 38.462 21.93 14.77 0.00 1.73
4272 4357 0.467474 CCTCCTCACCATGCATGCAT 60.467 55.000 27.46 27.46 37.08 3.96
4273 4358 1.077285 CCTCCTCACCATGCATGCA 60.077 57.895 25.04 25.04 0.00 3.96
4274 4359 1.077212 ACCTCCTCACCATGCATGC 60.077 57.895 21.69 11.82 0.00 4.06
4275 4360 0.253894 TCACCTCCTCACCATGCATG 59.746 55.000 20.19 20.19 0.00 4.06
4301 4386 2.292389 ACAAAAGATCCATCCATGCCCA 60.292 45.455 0.00 0.00 0.00 5.36
4302 4387 2.391678 ACAAAAGATCCATCCATGCCC 58.608 47.619 0.00 0.00 0.00 5.36
4303 4388 4.081531 TCAAACAAAAGATCCATCCATGCC 60.082 41.667 0.00 0.00 0.00 4.40
4304 4389 5.075858 TCAAACAAAAGATCCATCCATGC 57.924 39.130 0.00 0.00 0.00 4.06
4387 4472 6.756542 GGAACAAACATGCCCAACTATTTATC 59.243 38.462 0.00 0.00 0.00 1.75
4997 5082 3.996124 ACGCTGGAGACGCTGCTT 61.996 61.111 0.00 0.00 0.00 3.91
5073 5158 1.743252 CCACTTCGAGGCCAAGCTC 60.743 63.158 5.01 0.00 0.00 4.09
5723 5808 1.223211 GGCTGCTCCTCCTTTCCTC 59.777 63.158 0.00 0.00 0.00 3.71
5841 5932 4.821532 TCCCCTTAACTACCCTACCTAG 57.178 50.000 0.00 0.00 0.00 3.02
5939 6030 3.279116 CACCCGGCCGCATGTATG 61.279 66.667 22.85 3.53 0.00 2.39
6034 6125 6.468000 GTCAATAAAAACGCCCTTTATCGAAG 59.532 38.462 0.00 0.00 30.41 3.79
6035 6126 6.149807 AGTCAATAAAAACGCCCTTTATCGAA 59.850 34.615 0.00 0.00 30.41 3.71
6036 6127 5.644636 AGTCAATAAAAACGCCCTTTATCGA 59.355 36.000 0.00 0.00 30.41 3.59
6037 6128 5.875930 AGTCAATAAAAACGCCCTTTATCG 58.124 37.500 0.00 0.00 30.41 2.92
6038 6129 6.848451 TGAGTCAATAAAAACGCCCTTTATC 58.152 36.000 0.00 0.00 30.41 1.75
6047 6138 7.026562 TGCCACATTATGAGTCAATAAAAACG 58.973 34.615 0.00 0.00 0.00 3.60
6089 6180 4.400251 AGAGGCCACATGTTATTCATTGTG 59.600 41.667 5.01 0.00 36.40 3.33
6097 6188 2.579873 GATGCAGAGGCCACATGTTAT 58.420 47.619 5.01 0.00 40.13 1.89
6103 6194 3.549900 TTGCGATGCAGAGGCCACA 62.550 57.895 5.01 0.00 40.61 4.17
6104 6195 1.865788 TTTTGCGATGCAGAGGCCAC 61.866 55.000 5.01 0.00 40.61 5.01
6262 6363 7.496920 TCCAGATAGTGCAAATCAATCTTACAG 59.503 37.037 11.70 0.00 0.00 2.74
6339 6444 3.872771 TCTCAACGGCCGTTAATAAATCC 59.127 43.478 40.66 0.00 36.46 3.01
6349 6454 0.872388 GTTCATTTCTCAACGGCCGT 59.128 50.000 28.70 28.70 0.00 5.68
6351 6456 3.244976 CATTGTTCATTTCTCAACGGCC 58.755 45.455 0.00 0.00 0.00 6.13
6355 6460 6.774354 ATTGTGCATTGTTCATTTCTCAAC 57.226 33.333 0.00 0.00 0.00 3.18
6392 6497 8.895932 ACATTACAGCTAATTTTTCGACATTC 57.104 30.769 0.00 0.00 0.00 2.67
6437 6542 2.589720 GTTCTCCCCCGGAAAAAGAAA 58.410 47.619 0.73 0.00 0.00 2.52
6440 6545 0.111639 TGGTTCTCCCCCGGAAAAAG 59.888 55.000 0.73 0.00 0.00 2.27
6446 6551 2.609610 TCCTTGGTTCTCCCCCGG 60.610 66.667 0.00 0.00 0.00 5.73
6549 6661 5.932883 GCTCTTATATTTCTTTACGGAGGGG 59.067 44.000 0.00 0.00 0.00 4.79
6555 6667 7.902032 TCCAAACGCTCTTATATTTCTTTACG 58.098 34.615 0.00 0.00 0.00 3.18
6556 6668 9.865484 GATCCAAACGCTCTTATATTTCTTTAC 57.135 33.333 0.00 0.00 0.00 2.01
6574 6687 7.952671 TCCATCTGTATAGTAGTGATCCAAAC 58.047 38.462 0.00 0.00 0.00 2.93
6578 6691 8.104566 AGTACTCCATCTGTATAGTAGTGATCC 58.895 40.741 0.00 0.00 29.17 3.36
6590 6703 8.867097 GGATTATTACCAAGTACTCCATCTGTA 58.133 37.037 0.00 0.00 0.00 2.74
6591 6704 7.347222 TGGATTATTACCAAGTACTCCATCTGT 59.653 37.037 0.00 0.00 34.25 3.41
6592 6705 7.735917 TGGATTATTACCAAGTACTCCATCTG 58.264 38.462 0.00 0.00 34.25 2.90
6593 6706 7.931015 TGGATTATTACCAAGTACTCCATCT 57.069 36.000 0.00 0.00 34.25 2.90
6594 6707 7.170998 CGTTGGATTATTACCAAGTACTCCATC 59.829 40.741 0.00 0.00 46.12 3.51
6595 6708 6.990349 CGTTGGATTATTACCAAGTACTCCAT 59.010 38.462 0.00 0.00 46.12 3.41
6596 6709 6.342906 CGTTGGATTATTACCAAGTACTCCA 58.657 40.000 0.00 0.00 46.12 3.86
6597 6710 5.235831 GCGTTGGATTATTACCAAGTACTCC 59.764 44.000 0.00 0.00 46.12 3.85
6598 6711 6.047231 AGCGTTGGATTATTACCAAGTACTC 58.953 40.000 0.00 0.00 46.12 2.59
6599 6712 5.985911 AGCGTTGGATTATTACCAAGTACT 58.014 37.500 0.00 0.00 46.12 2.73
6600 6713 6.047231 AGAGCGTTGGATTATTACCAAGTAC 58.953 40.000 0.00 0.00 46.12 2.73
6601 6714 6.229936 AGAGCGTTGGATTATTACCAAGTA 57.770 37.500 0.00 0.00 46.12 2.24
6602 6715 5.099042 AGAGCGTTGGATTATTACCAAGT 57.901 39.130 0.00 0.00 46.12 3.16
6603 6716 5.354234 ACAAGAGCGTTGGATTATTACCAAG 59.646 40.000 0.00 0.00 46.12 3.61
6604 6717 5.250200 ACAAGAGCGTTGGATTATTACCAA 58.750 37.500 6.77 0.00 43.84 3.67
6605 6718 4.839121 ACAAGAGCGTTGGATTATTACCA 58.161 39.130 6.77 0.00 35.47 3.25
6606 6719 6.913873 TTACAAGAGCGTTGGATTATTACC 57.086 37.500 6.77 0.00 0.00 2.85
6607 6720 7.225931 TCCATTACAAGAGCGTTGGATTATTAC 59.774 37.037 6.77 0.00 0.00 1.89
6608 6721 7.276658 TCCATTACAAGAGCGTTGGATTATTA 58.723 34.615 6.77 0.00 0.00 0.98
6609 6722 6.119536 TCCATTACAAGAGCGTTGGATTATT 58.880 36.000 6.77 0.00 0.00 1.40
6610 6723 5.680619 TCCATTACAAGAGCGTTGGATTAT 58.319 37.500 6.77 0.00 0.00 1.28
6611 6724 5.092554 TCCATTACAAGAGCGTTGGATTA 57.907 39.130 6.77 0.00 0.00 1.75
6612 6725 3.941483 CTCCATTACAAGAGCGTTGGATT 59.059 43.478 6.77 0.00 33.10 3.01
6613 6726 3.197766 TCTCCATTACAAGAGCGTTGGAT 59.802 43.478 6.77 0.00 33.10 3.41
6614 6727 2.565391 TCTCCATTACAAGAGCGTTGGA 59.435 45.455 6.77 0.00 0.00 3.53
6615 6728 2.673368 GTCTCCATTACAAGAGCGTTGG 59.327 50.000 6.77 0.00 0.00 3.77
6616 6729 2.345641 CGTCTCCATTACAAGAGCGTTG 59.654 50.000 0.72 0.72 0.00 4.10
6617 6730 2.607187 CGTCTCCATTACAAGAGCGTT 58.393 47.619 0.00 0.00 0.00 4.84
6618 6731 1.736032 GCGTCTCCATTACAAGAGCGT 60.736 52.381 0.00 0.00 34.41 5.07
6619 6732 0.924090 GCGTCTCCATTACAAGAGCG 59.076 55.000 0.00 0.00 34.76 5.03
6620 6733 2.010145 TGCGTCTCCATTACAAGAGC 57.990 50.000 0.00 0.00 0.00 4.09
6621 6734 3.849911 TCTTGCGTCTCCATTACAAGAG 58.150 45.455 0.00 0.00 41.20 2.85
6622 6735 3.953712 TCTTGCGTCTCCATTACAAGA 57.046 42.857 0.00 0.00 43.18 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.