Multiple sequence alignment - TraesCS2A01G044500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G044500 chr2A 100.000 5042 0 0 1 5042 17602016 17596975 0.000000e+00 9311.0
1 TraesCS2A01G044500 chr2A 89.757 1972 174 10 2993 4955 17503439 17501487 0.000000e+00 2497.0
2 TraesCS2A01G044500 chr2A 88.564 2055 201 17 2993 5042 17475282 17473257 0.000000e+00 2462.0
3 TraesCS2A01G044500 chr2A 88.267 2054 191 23 2998 5042 17534498 17532486 0.000000e+00 2412.0
4 TraesCS2A01G044500 chr2A 90.063 1751 163 4 2993 4743 17549835 17548096 0.000000e+00 2259.0
5 TraesCS2A01G044500 chr2A 88.662 1711 181 5 2431 4139 17426178 17424479 0.000000e+00 2073.0
6 TraesCS2A01G044500 chr2A 77.548 2080 338 84 2998 5042 17413452 17411467 0.000000e+00 1134.0
7 TraesCS2A01G044500 chr2A 87.879 825 70 10 4135 4935 17419081 17418263 0.000000e+00 942.0
8 TraesCS2A01G044500 chr2A 80.000 660 116 13 1354 2002 17536091 17535437 1.640000e-129 473.0
9 TraesCS2A01G044500 chr2A 85.945 434 61 0 2416 2849 17550382 17549949 9.890000e-127 464.0
10 TraesCS2A01G044500 chr2A 86.396 419 57 0 2431 2849 17503971 17503553 4.600000e-125 459.0
11 TraesCS2A01G044500 chr2A 85.442 419 61 0 2431 2849 17542402 17541984 2.160000e-118 436.0
12 TraesCS2A01G044500 chr2A 83.371 445 39 14 4608 5042 17559176 17558757 3.680000e-101 379.0
13 TraesCS2A01G044500 chr2A 80.968 310 28 12 4628 4935 17507924 17507644 3.060000e-52 217.0
14 TraesCS2A01G044500 chr2D 80.413 4314 647 112 828 5030 15518926 15514700 0.000000e+00 3103.0
15 TraesCS2A01G044500 chr2D 88.846 1569 169 3 2998 4560 15506865 15505297 0.000000e+00 1923.0
16 TraesCS2A01G044500 chr2D 83.513 2038 268 39 3036 5042 15472520 15470520 0.000000e+00 1840.0
17 TraesCS2A01G044500 chr2D 96.028 856 21 6 4189 5042 15458328 15457484 0.000000e+00 1380.0
18 TraesCS2A01G044500 chr2D 92.597 824 26 11 1 796 15509384 15508568 0.000000e+00 1151.0
19 TraesCS2A01G044500 chr2D 85.199 1081 121 23 1106 2159 15498529 15497461 0.000000e+00 1074.0
20 TraesCS2A01G044500 chr2D 88.131 733 85 2 2119 2850 15507711 15506980 0.000000e+00 870.0
21 TraesCS2A01G044500 chr2D 86.996 546 71 0 1393 1938 15508252 15507707 2.580000e-172 616.0
22 TraesCS2A01G044500 chr2D 77.827 902 157 27 1412 2297 15474097 15473223 7.480000e-143 518.0
23 TraesCS2A01G044500 chr2D 83.579 542 63 16 169 696 15502180 15501651 7.590000e-133 484.0
24 TraesCS2A01G044500 chr2D 95.926 270 10 1 1 269 15519727 15519458 2.160000e-118 436.0
25 TraesCS2A01G044500 chr2D 85.238 420 62 0 2431 2850 15473095 15472676 2.790000e-117 433.0
26 TraesCS2A01G044500 chr2D 85.965 342 35 7 4693 5027 15505223 15504888 2.230000e-93 353.0
27 TraesCS2A01G044500 chr2D 94.931 217 9 2 826 1040 15508489 15508273 6.250000e-89 339.0
28 TraesCS2A01G044500 chr2D 83.987 306 35 9 831 1129 15501520 15501222 1.070000e-71 281.0
29 TraesCS2A01G044500 chr2D 92.347 196 10 2 121 311 15519181 15518986 1.790000e-69 274.0
30 TraesCS2A01G044500 chr2D 89.423 104 6 3 8 110 15502299 15502200 5.300000e-25 126.0
31 TraesCS2A01G044500 chr2D 90.476 42 4 0 2191 2232 396644 396685 7.050000e-04 56.5
32 TraesCS2A01G044500 chr2B 90.209 1961 172 7 2998 4955 27545118 27543175 0.000000e+00 2540.0
33 TraesCS2A01G044500 chr2B 87.938 1882 226 1 2416 4297 27583105 27581225 0.000000e+00 2217.0
34 TraesCS2A01G044500 chr2B 86.133 1774 200 22 3278 5042 27617256 27615520 0.000000e+00 1871.0
35 TraesCS2A01G044500 chr2B 89.671 881 85 1 2416 3290 27619340 27618460 0.000000e+00 1118.0
36 TraesCS2A01G044500 chr2B 78.158 1520 271 41 1350 2849 27546715 27545237 0.000000e+00 911.0
37 TraesCS2A01G044500 chr2B 83.485 769 73 18 169 887 27594926 27594162 0.000000e+00 667.0
38 TraesCS2A01G044500 chr2B 95.413 218 4 3 1 217 27593942 27593730 4.830000e-90 342.0
39 TraesCS2A01G044500 chr2B 91.489 47 2 1 1017 1061 27593722 27593676 4.210000e-06 63.9
40 TraesCS2A01G044500 chr6B 83.361 601 93 7 1347 1944 29920742 29921338 2.650000e-152 549.0
41 TraesCS2A01G044500 chr6B 85.380 513 75 0 1432 1944 29856690 29857202 2.670000e-147 532.0
42 TraesCS2A01G044500 chr6B 83.694 509 83 0 1435 1943 29931807 29931299 9.820000e-132 481.0
43 TraesCS2A01G044500 chr6A 82.412 597 103 2 1347 1942 17646872 17647467 2.080000e-143 520.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G044500 chr2A 17596975 17602016 5041 True 9311.000000 9311 100.000000 1 5042 1 chr2A.!!$R7 5041
1 TraesCS2A01G044500 chr2A 17473257 17475282 2025 True 2462.000000 2462 88.564000 2993 5042 1 chr2A.!!$R4 2049
2 TraesCS2A01G044500 chr2A 17424479 17426178 1699 True 2073.000000 2073 88.662000 2431 4139 1 chr2A.!!$R3 1708
3 TraesCS2A01G044500 chr2A 17532486 17536091 3605 True 1442.500000 2412 84.133500 1354 5042 2 chr2A.!!$R9 3688
4 TraesCS2A01G044500 chr2A 17548096 17550382 2286 True 1361.500000 2259 88.004000 2416 4743 2 chr2A.!!$R10 2327
5 TraesCS2A01G044500 chr2A 17411467 17413452 1985 True 1134.000000 1134 77.548000 2998 5042 1 chr2A.!!$R1 2044
6 TraesCS2A01G044500 chr2A 17501487 17507924 6437 True 1057.666667 2497 85.707000 2431 4955 3 chr2A.!!$R8 2524
7 TraesCS2A01G044500 chr2A 17418263 17419081 818 True 942.000000 942 87.879000 4135 4935 1 chr2A.!!$R2 800
8 TraesCS2A01G044500 chr2D 15457484 15458328 844 True 1380.000000 1380 96.028000 4189 5042 1 chr2D.!!$R1 853
9 TraesCS2A01G044500 chr2D 15514700 15519727 5027 True 1271.000000 3103 89.562000 1 5030 3 chr2D.!!$R4 5029
10 TraesCS2A01G044500 chr2D 15470520 15474097 3577 True 930.333333 1840 82.192667 1412 5042 3 chr2D.!!$R2 3630
11 TraesCS2A01G044500 chr2D 15497461 15509384 11923 True 721.700000 1923 87.965400 1 5027 10 chr2D.!!$R3 5026
12 TraesCS2A01G044500 chr2B 27581225 27583105 1880 True 2217.000000 2217 87.938000 2416 4297 1 chr2B.!!$R1 1881
13 TraesCS2A01G044500 chr2B 27543175 27546715 3540 True 1725.500000 2540 84.183500 1350 4955 2 chr2B.!!$R2 3605
14 TraesCS2A01G044500 chr2B 27615520 27619340 3820 True 1494.500000 1871 87.902000 2416 5042 2 chr2B.!!$R4 2626
15 TraesCS2A01G044500 chr2B 27593676 27594926 1250 True 357.633333 667 90.129000 1 1061 3 chr2B.!!$R3 1060
16 TraesCS2A01G044500 chr6B 29920742 29921338 596 False 549.000000 549 83.361000 1347 1944 1 chr6B.!!$F2 597
17 TraesCS2A01G044500 chr6B 29856690 29857202 512 False 532.000000 532 85.380000 1432 1944 1 chr6B.!!$F1 512
18 TraesCS2A01G044500 chr6B 29931299 29931807 508 True 481.000000 481 83.694000 1435 1943 1 chr6B.!!$R1 508
19 TraesCS2A01G044500 chr6A 17646872 17647467 595 False 520.000000 520 82.412000 1347 1942 1 chr6A.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 928 0.613260 AATGGCGCTGTCTGTTCCTA 59.387 50.0 7.64 0.0 0.00 2.94 F
1898 2869 0.037590 TGTGGTGTCCCAGCAATACC 59.962 55.0 0.00 0.0 43.50 2.73 F
1967 2938 0.029567 GGTCTCGTGCTAGATGACGG 59.970 60.0 0.00 0.0 36.23 4.79 F
1968 2939 0.029567 GTCTCGTGCTAGATGACGGG 59.970 60.0 0.00 0.0 37.41 5.28 F
2287 3258 0.035317 TTCGCTGCAGAGGAACATGT 59.965 50.0 20.43 0.0 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 2919 0.029567 CCGTCATCTAGCACGAGACC 59.970 60.000 9.50 0.00 38.32 3.85 R
3646 6450 0.773644 ATCCAGCTGGTCACACCTTT 59.226 50.000 31.58 4.63 39.58 3.11 R
3871 6681 2.203538 CCTTGCACCTTGTGGGCT 60.204 61.111 0.00 0.00 39.10 5.19 R
4008 6818 3.094062 GCACGCCATAGGGAGCTGA 62.094 63.158 0.00 0.00 39.06 4.26 R
4155 6965 1.305381 AAGCGTCTCCAGGCTAGGT 60.305 57.895 0.00 0.00 43.08 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
274 710 3.825143 AACATTTGGCTTTGACTTGCT 57.175 38.095 0.00 0.00 0.00 3.91
359 823 2.485814 GGCTCGAACTGCTTTCATTCTT 59.514 45.455 0.00 0.00 33.24 2.52
446 913 3.395639 GCAATGTCAATGCCCATAATGG 58.604 45.455 1.05 0.00 37.85 3.16
461 928 0.613260 AATGGCGCTGTCTGTTCCTA 59.387 50.000 7.64 0.00 0.00 2.94
922 1481 6.673978 TCAGGAAAGGAAGAGAATTAGATCCA 59.326 38.462 0.00 0.00 32.47 3.41
963 1897 6.086011 ACCATGGGTTAGATATTCCAAACA 57.914 37.500 18.09 0.00 27.29 2.83
976 1910 1.885887 TCCAAACATAGTTGCTGGCAC 59.114 47.619 0.00 0.00 31.90 5.01
1010 1951 6.950842 TGATTTGATTCACTATGTCTGGACT 58.049 36.000 2.38 0.00 0.00 3.85
1061 2002 7.272978 TCTAAAGGTGGTTAATGCTGTAGATC 58.727 38.462 0.00 0.00 0.00 2.75
1089 2034 7.748241 GTGACTTGCTTGATTTCTTTAGCTAAG 59.252 37.037 6.24 1.77 34.77 2.18
1106 2051 1.963985 AAGGAGCTCAACTGGGATCT 58.036 50.000 17.19 0.00 0.00 2.75
1110 2055 2.419851 GGAGCTCAACTGGGATCTTCAG 60.420 54.545 17.19 12.73 38.16 3.02
1118 2063 3.480470 ACTGGGATCTTCAGTTGTTGTG 58.520 45.455 13.76 0.00 42.17 3.33
1148 2093 9.533831 ACAAGAATTAAATAGGTCATTCCTTGT 57.466 29.630 0.00 0.00 45.67 3.16
1150 2095 9.533831 AAGAATTAAATAGGTCATTCCTTGTGT 57.466 29.630 0.00 0.00 45.67 3.72
1151 2096 9.178758 AGAATTAAATAGGTCATTCCTTGTGTC 57.821 33.333 0.00 0.00 45.67 3.67
1200 2146 2.745821 TGCTGTCTGCTAGCATTTGAAG 59.254 45.455 19.72 12.45 45.52 3.02
1236 2183 2.365582 CAGATTTACCGGGGTCTTTGG 58.634 52.381 6.32 0.00 0.00 3.28
1243 2190 2.337849 ACCGGGGTCTTTGGTACTTAA 58.662 47.619 6.32 0.00 33.25 1.85
1257 2204 9.341899 CTTTGGTACTTAATTATTTGCACACTC 57.658 33.333 0.00 0.00 0.00 3.51
1260 2207 5.560966 ACTTAATTATTTGCACACTCGGG 57.439 39.130 0.00 0.00 0.00 5.14
1283 2230 6.490040 GGGCAGTGACCATGTTTTATGTATAT 59.510 38.462 11.25 0.00 0.00 0.86
1312 2259 5.367937 ACACTTGATCACTGCTTCCCTATAT 59.632 40.000 0.00 0.00 0.00 0.86
1324 2271 5.221904 TGCTTCCCTATATATGCACACACAT 60.222 40.000 0.00 0.00 0.00 3.21
1374 2341 3.667429 GACGCGCCTGATGGTTTGC 62.667 63.158 5.73 0.00 35.27 3.68
1388 2356 3.420893 TGGTTTGCCATGGAAGACTTAG 58.579 45.455 18.40 0.00 40.46 2.18
1487 2458 1.945387 AACATCGATGCTGCAGTAGG 58.055 50.000 25.11 7.44 0.00 3.18
1539 2510 8.897752 ACAAGCAAAGGAAATATGATCTACTTC 58.102 33.333 0.00 0.00 0.00 3.01
1549 2520 7.516198 AATATGATCTACTTCAATGGTTGGC 57.484 36.000 0.00 0.00 0.00 4.52
1550 2521 4.299586 TGATCTACTTCAATGGTTGGCA 57.700 40.909 0.00 0.00 0.00 4.92
1556 2527 2.498481 ACTTCAATGGTTGGCATGGATG 59.502 45.455 0.00 0.00 0.00 3.51
1577 2548 3.200593 GGCATCAGCGGCACTCAG 61.201 66.667 1.45 0.00 43.41 3.35
1580 2551 4.479993 ATCAGCGGCACTCAGGGC 62.480 66.667 1.45 0.00 0.00 5.19
1584 2555 4.082523 GCGGCACTCAGGGCAGTA 62.083 66.667 0.00 0.00 0.00 2.74
1587 2558 2.664081 GGCACTCAGGGCAGTAGCT 61.664 63.158 0.00 0.00 41.70 3.32
1641 2612 4.985538 ACAAGGTTATTCATGTGGACTGT 58.014 39.130 0.00 0.00 0.00 3.55
1653 2624 0.542333 TGGACTGTTCGGTGTGGAAA 59.458 50.000 0.00 0.00 0.00 3.13
1702 2673 1.068921 GAGGAGCTGGATCTTCCGC 59.931 63.158 0.00 3.28 40.17 5.54
1704 2675 1.053264 AGGAGCTGGATCTTCCGCAT 61.053 55.000 0.00 0.42 40.17 4.73
1706 2677 1.224965 GAGCTGGATCTTCCGCATTC 58.775 55.000 0.00 1.00 40.17 2.67
1722 2693 2.429610 GCATTCTGTGATGGCCATCTTT 59.570 45.455 38.59 18.45 38.60 2.52
1727 2698 3.054213 TCTGTGATGGCCATCTTTGATCA 60.054 43.478 38.59 25.72 38.60 2.92
1736 2707 1.002366 ATCTTTGATCAGTGCGACGC 58.998 50.000 14.19 14.19 0.00 5.19
1737 2708 0.319469 TCTTTGATCAGTGCGACGCA 60.319 50.000 20.50 20.50 35.60 5.24
1749 2720 1.594397 TGCGACGCAGATGATGATTTC 59.406 47.619 20.50 0.00 33.32 2.17
1751 2722 2.030823 GCGACGCAGATGATGATTTCAA 59.969 45.455 16.42 0.00 38.03 2.69
1752 2723 3.485711 GCGACGCAGATGATGATTTCAAA 60.486 43.478 16.42 0.00 38.03 2.69
1783 2754 5.671463 TGAAGACTCTAGAGGGGTGATAT 57.329 43.478 23.50 0.00 0.00 1.63
1785 2756 5.134509 TGAAGACTCTAGAGGGGTGATATCA 59.865 44.000 23.50 0.00 0.00 2.15
1848 2819 8.641541 AGTAGATTTGTGGTGATTTTTCACAAT 58.358 29.630 8.60 0.00 46.43 2.71
1855 2826 5.242838 GTGGTGATTTTTCACAATGGGAGTA 59.757 40.000 8.25 0.00 42.07 2.59
1896 2867 1.003118 GAGTGTGGTGTCCCAGCAATA 59.997 52.381 0.00 0.00 43.50 1.90
1897 2868 1.165270 GTGTGGTGTCCCAGCAATAC 58.835 55.000 0.00 0.00 43.50 1.89
1898 2869 0.037590 TGTGGTGTCCCAGCAATACC 59.962 55.000 0.00 0.00 43.50 2.73
1899 2870 0.037590 GTGGTGTCCCAGCAATACCA 59.962 55.000 0.00 0.00 43.50 3.25
1901 2872 1.357420 TGGTGTCCCAGCAATACCATT 59.643 47.619 0.00 0.00 38.96 3.16
1902 2873 2.024414 GGTGTCCCAGCAATACCATTC 58.976 52.381 0.00 0.00 0.00 2.67
1904 2875 3.356290 GTGTCCCAGCAATACCATTCTT 58.644 45.455 0.00 0.00 0.00 2.52
1905 2876 3.129287 GTGTCCCAGCAATACCATTCTTG 59.871 47.826 0.00 0.00 0.00 3.02
1906 2877 3.010027 TGTCCCAGCAATACCATTCTTGA 59.990 43.478 0.00 0.00 0.00 3.02
1907 2878 3.629398 GTCCCAGCAATACCATTCTTGAG 59.371 47.826 0.00 0.00 0.00 3.02
1910 2881 4.272489 CCAGCAATACCATTCTTGAGGAA 58.728 43.478 0.00 0.00 38.41 3.36
1911 2882 4.096984 CCAGCAATACCATTCTTGAGGAAC 59.903 45.833 0.00 0.00 36.70 3.62
1912 2883 4.701651 CAGCAATACCATTCTTGAGGAACA 59.298 41.667 0.00 0.00 36.70 3.18
1914 2885 5.774690 AGCAATACCATTCTTGAGGAACAAA 59.225 36.000 0.00 0.00 38.08 2.83
1916 2887 6.294731 GCAATACCATTCTTGAGGAACAAAGT 60.295 38.462 0.00 0.00 38.08 2.66
1917 2888 6.824305 ATACCATTCTTGAGGAACAAAGTG 57.176 37.500 0.00 0.00 38.08 3.16
1918 2889 4.536765 ACCATTCTTGAGGAACAAAGTGT 58.463 39.130 0.00 0.00 38.08 3.55
1920 2891 5.163519 ACCATTCTTGAGGAACAAAGTGTTG 60.164 40.000 0.00 0.00 41.28 3.33
1929 2900 1.762708 ACAAAGTGTTGTGGACCTGG 58.237 50.000 0.00 0.00 46.40 4.45
1930 2901 0.385390 CAAAGTGTTGTGGACCTGGC 59.615 55.000 0.00 0.00 0.00 4.85
1931 2902 1.101049 AAAGTGTTGTGGACCTGGCG 61.101 55.000 0.00 0.00 0.00 5.69
1932 2903 2.203153 GTGTTGTGGACCTGGCGT 60.203 61.111 0.00 0.00 0.00 5.68
1933 2904 2.203139 TGTTGTGGACCTGGCGTG 60.203 61.111 0.00 0.00 0.00 5.34
1934 2905 2.978010 GTTGTGGACCTGGCGTGG 60.978 66.667 0.00 0.00 0.00 4.94
1942 2913 2.359975 CCTGGCGTGGGAGGTTTC 60.360 66.667 0.00 0.00 0.00 2.78
1943 2914 2.742372 CTGGCGTGGGAGGTTTCG 60.742 66.667 0.00 0.00 0.00 3.46
1944 2915 4.323477 TGGCGTGGGAGGTTTCGG 62.323 66.667 0.00 0.00 0.00 4.30
1946 2917 4.699522 GCGTGGGAGGTTTCGGCT 62.700 66.667 0.00 0.00 0.00 5.52
1947 2918 2.032071 CGTGGGAGGTTTCGGCTT 59.968 61.111 0.00 0.00 0.00 4.35
1948 2919 2.325082 CGTGGGAGGTTTCGGCTTG 61.325 63.158 0.00 0.00 0.00 4.01
1951 2922 1.674651 GGGAGGTTTCGGCTTGGTC 60.675 63.158 0.00 0.00 0.00 4.02
1954 2925 1.004918 AGGTTTCGGCTTGGTCTCG 60.005 57.895 0.00 0.00 0.00 4.04
1955 2926 1.301479 GGTTTCGGCTTGGTCTCGT 60.301 57.895 0.00 0.00 0.00 4.18
1956 2927 1.566018 GGTTTCGGCTTGGTCTCGTG 61.566 60.000 0.00 0.00 0.00 4.35
1957 2928 1.959226 TTTCGGCTTGGTCTCGTGC 60.959 57.895 0.00 0.00 0.00 5.34
1958 2929 2.377628 TTTCGGCTTGGTCTCGTGCT 62.378 55.000 0.00 0.00 0.00 4.40
1959 2930 1.529152 TTCGGCTTGGTCTCGTGCTA 61.529 55.000 0.00 0.00 0.00 3.49
1960 2931 1.517257 CGGCTTGGTCTCGTGCTAG 60.517 63.158 0.00 0.00 0.00 3.42
1962 2933 0.461961 GGCTTGGTCTCGTGCTAGAT 59.538 55.000 0.00 0.00 0.00 1.98
1964 2935 1.135139 GCTTGGTCTCGTGCTAGATGA 59.865 52.381 0.00 0.00 0.00 2.92
1965 2936 2.803451 CTTGGTCTCGTGCTAGATGAC 58.197 52.381 0.00 0.00 0.00 3.06
1966 2937 0.733150 TGGTCTCGTGCTAGATGACG 59.267 55.000 0.00 0.00 36.91 4.35
1967 2938 0.029567 GGTCTCGTGCTAGATGACGG 59.970 60.000 0.00 0.00 36.23 4.79
1968 2939 0.029567 GTCTCGTGCTAGATGACGGG 59.970 60.000 0.00 0.00 37.41 5.28
1969 2940 1.101635 TCTCGTGCTAGATGACGGGG 61.102 60.000 8.78 4.25 36.68 5.73
1971 2942 0.681887 TCGTGCTAGATGACGGGGAA 60.682 55.000 0.00 0.00 36.23 3.97
1973 2944 1.202533 CGTGCTAGATGACGGGGAATT 60.203 52.381 0.00 0.00 31.84 2.17
1974 2945 2.213499 GTGCTAGATGACGGGGAATTG 58.787 52.381 0.00 0.00 0.00 2.32
1978 2949 3.684413 GCTAGATGACGGGGAATTGGAAA 60.684 47.826 0.00 0.00 0.00 3.13
1979 2950 3.449746 AGATGACGGGGAATTGGAAAA 57.550 42.857 0.00 0.00 0.00 2.29
1980 2951 3.773560 AGATGACGGGGAATTGGAAAAA 58.226 40.909 0.00 0.00 0.00 1.94
1981 2952 4.352893 AGATGACGGGGAATTGGAAAAAT 58.647 39.130 0.00 0.00 0.00 1.82
1982 2953 3.951775 TGACGGGGAATTGGAAAAATG 57.048 42.857 0.00 0.00 0.00 2.32
1983 2954 2.564947 TGACGGGGAATTGGAAAAATGG 59.435 45.455 0.00 0.00 0.00 3.16
1984 2955 2.829120 GACGGGGAATTGGAAAAATGGA 59.171 45.455 0.00 0.00 0.00 3.41
1985 2956 2.831526 ACGGGGAATTGGAAAAATGGAG 59.168 45.455 0.00 0.00 0.00 3.86
1986 2957 2.831526 CGGGGAATTGGAAAAATGGAGT 59.168 45.455 0.00 0.00 0.00 3.85
1990 2961 3.996363 GGAATTGGAAAAATGGAGTGTGC 59.004 43.478 0.00 0.00 0.00 4.57
1991 2962 4.502950 GGAATTGGAAAAATGGAGTGTGCA 60.503 41.667 0.00 0.00 0.00 4.57
1992 2963 3.731652 TTGGAAAAATGGAGTGTGCAG 57.268 42.857 0.00 0.00 0.00 4.41
1993 2964 2.942804 TGGAAAAATGGAGTGTGCAGA 58.057 42.857 0.00 0.00 0.00 4.26
1994 2965 2.622942 TGGAAAAATGGAGTGTGCAGAC 59.377 45.455 5.72 5.72 0.00 3.51
1995 2966 2.887152 GGAAAAATGGAGTGTGCAGACT 59.113 45.455 17.63 17.63 0.00 3.24
1996 2967 4.072131 GGAAAAATGGAGTGTGCAGACTA 58.928 43.478 17.62 2.25 0.00 2.59
1997 2968 4.518970 GGAAAAATGGAGTGTGCAGACTAA 59.481 41.667 17.62 8.90 0.00 2.24
1999 2970 5.633830 AAAATGGAGTGTGCAGACTAATG 57.366 39.130 17.62 0.00 0.00 1.90
2001 2972 3.769739 TGGAGTGTGCAGACTAATGTT 57.230 42.857 17.62 0.00 0.00 2.71
2002 2973 4.085357 TGGAGTGTGCAGACTAATGTTT 57.915 40.909 17.62 0.00 0.00 2.83
2003 2974 4.460263 TGGAGTGTGCAGACTAATGTTTT 58.540 39.130 17.62 0.00 0.00 2.43
2005 2976 5.008613 TGGAGTGTGCAGACTAATGTTTTTC 59.991 40.000 17.62 0.95 0.00 2.29
2007 2978 6.305693 AGTGTGCAGACTAATGTTTTTCTC 57.694 37.500 15.99 0.00 0.00 2.87
2009 2980 6.318648 AGTGTGCAGACTAATGTTTTTCTCAA 59.681 34.615 15.99 0.00 0.00 3.02
2010 2981 7.013655 AGTGTGCAGACTAATGTTTTTCTCAAT 59.986 33.333 15.99 0.00 0.00 2.57
2011 2982 7.324616 GTGTGCAGACTAATGTTTTTCTCAATC 59.675 37.037 6.76 0.00 0.00 2.67
2012 2983 6.803807 GTGCAGACTAATGTTTTTCTCAATCC 59.196 38.462 0.00 0.00 0.00 3.01
2013 2984 6.071952 TGCAGACTAATGTTTTTCTCAATCCC 60.072 38.462 0.00 0.00 0.00 3.85
2014 2985 6.151817 GCAGACTAATGTTTTTCTCAATCCCT 59.848 38.462 0.00 0.00 0.00 4.20
2015 2986 7.627300 GCAGACTAATGTTTTTCTCAATCCCTC 60.627 40.741 0.00 0.00 0.00 4.30
2018 2989 6.887002 ACTAATGTTTTTCTCAATCCCTCTCC 59.113 38.462 0.00 0.00 0.00 3.71
2019 2990 5.527026 ATGTTTTTCTCAATCCCTCTCCT 57.473 39.130 0.00 0.00 0.00 3.69
2021 2992 4.013050 GTTTTTCTCAATCCCTCTCCTGG 58.987 47.826 0.00 0.00 0.00 4.45
2022 2993 2.948889 TTCTCAATCCCTCTCCTGGA 57.051 50.000 0.00 0.00 36.05 3.86
2025 2996 0.041238 TCAATCCCTCTCCTGGACGT 59.959 55.000 0.00 0.00 33.94 4.34
2027 2998 0.041238 AATCCCTCTCCTGGACGTGA 59.959 55.000 0.00 0.00 33.94 4.35
2028 2999 0.396417 ATCCCTCTCCTGGACGTGAG 60.396 60.000 0.00 0.00 33.94 3.51
2032 3003 0.814457 CTCTCCTGGACGTGAGGAAG 59.186 60.000 12.82 9.74 39.20 3.46
2036 3007 2.234908 CTCCTGGACGTGAGGAAGAATT 59.765 50.000 12.82 0.00 39.20 2.17
2037 3008 2.028112 TCCTGGACGTGAGGAAGAATTG 60.028 50.000 9.98 0.00 36.63 2.32
2040 3011 1.734465 GGACGTGAGGAAGAATTGCAG 59.266 52.381 0.00 0.00 39.77 4.41
2041 3012 1.734465 GACGTGAGGAAGAATTGCAGG 59.266 52.381 0.00 0.00 39.77 4.85
2042 3013 1.347707 ACGTGAGGAAGAATTGCAGGA 59.652 47.619 0.00 0.00 39.77 3.86
2043 3014 2.026822 ACGTGAGGAAGAATTGCAGGAT 60.027 45.455 0.00 0.00 39.77 3.24
2045 3016 3.681034 CGTGAGGAAGAATTGCAGGATCT 60.681 47.826 0.00 0.00 39.77 2.75
2047 3018 3.129871 GAGGAAGAATTGCAGGATCTCG 58.870 50.000 0.00 0.00 39.77 4.04
2048 3019 2.503356 AGGAAGAATTGCAGGATCTCGT 59.497 45.455 0.00 0.00 39.77 4.18
2049 3020 3.706594 AGGAAGAATTGCAGGATCTCGTA 59.293 43.478 0.00 0.00 39.77 3.43
2050 3021 4.054671 GGAAGAATTGCAGGATCTCGTAG 58.945 47.826 0.00 0.00 35.98 3.51
2051 3022 4.442192 GGAAGAATTGCAGGATCTCGTAGT 60.442 45.833 0.00 0.00 35.98 2.73
2053 3024 2.231215 ATTGCAGGATCTCGTAGTGC 57.769 50.000 0.00 0.00 34.62 4.40
2055 3026 1.313091 TGCAGGATCTCGTAGTGCGT 61.313 55.000 0.00 0.00 42.13 5.24
2058 3029 1.132453 CAGGATCTCGTAGTGCGTGAA 59.868 52.381 9.36 0.00 44.57 3.18
2059 3030 1.402259 AGGATCTCGTAGTGCGTGAAG 59.598 52.381 9.36 0.00 44.57 3.02
2061 3032 2.539953 GGATCTCGTAGTGCGTGAAGAG 60.540 54.545 9.36 0.00 44.57 2.85
2063 3034 0.798771 CTCGTAGTGCGTGAAGAGGC 60.799 60.000 0.00 0.00 42.13 4.70
2064 3035 1.805945 CGTAGTGCGTGAAGAGGCC 60.806 63.158 0.00 0.00 35.54 5.19
2065 3036 1.805945 GTAGTGCGTGAAGAGGCCG 60.806 63.158 0.00 0.00 31.63 6.13
2067 3038 1.934220 TAGTGCGTGAAGAGGCCGAG 61.934 60.000 0.00 0.00 31.63 4.63
2068 3039 4.069232 TGCGTGAAGAGGCCGAGG 62.069 66.667 0.00 0.00 31.63 4.63
2070 3041 2.492090 CGTGAAGAGGCCGAGGAG 59.508 66.667 0.00 0.00 0.00 3.69
2072 3043 1.985116 GTGAAGAGGCCGAGGAGGT 60.985 63.158 0.00 0.00 43.70 3.85
2090 3061 2.126071 CGTCAACCGCACGAGGAT 60.126 61.111 0.00 0.00 39.75 3.24
2091 3062 1.736645 CGTCAACCGCACGAGGATT 60.737 57.895 0.00 0.00 39.75 3.01
2092 3063 1.787847 GTCAACCGCACGAGGATTG 59.212 57.895 0.00 0.00 34.73 2.67
2093 3064 2.032634 TCAACCGCACGAGGATTGC 61.033 57.895 0.00 0.00 36.57 3.56
2110 3081 2.759973 CGGAGCCTGGCTACCTGA 60.760 66.667 24.96 0.00 39.88 3.86
2111 3082 2.359169 CGGAGCCTGGCTACCTGAA 61.359 63.158 24.96 0.00 39.88 3.02
2113 3084 1.222113 GAGCCTGGCTACCTGAACC 59.778 63.158 23.44 2.15 39.88 3.62
2115 3086 1.377333 GCCTGGCTACCTGAACCAC 60.377 63.158 12.43 0.00 0.00 4.16
2117 3088 0.400213 CCTGGCTACCTGAACCACAA 59.600 55.000 0.00 0.00 0.00 3.33
2130 3101 3.540211 CCACAAGGTAGTCCAGCAG 57.460 57.895 0.00 0.00 35.89 4.24
2131 3102 0.687354 CCACAAGGTAGTCCAGCAGT 59.313 55.000 0.00 0.00 35.89 4.40
2133 3104 1.070758 CACAAGGTAGTCCAGCAGTGT 59.929 52.381 0.00 0.00 35.89 3.55
2135 3106 0.035458 AAGGTAGTCCAGCAGTGTGC 59.965 55.000 0.00 0.00 45.46 4.57
2138 3109 0.036010 GTAGTCCAGCAGTGTGCCAT 60.036 55.000 0.00 0.00 46.52 4.40
2139 3110 0.036105 TAGTCCAGCAGTGTGCCATG 60.036 55.000 0.00 0.00 46.52 3.66
2140 3111 1.601759 GTCCAGCAGTGTGCCATGT 60.602 57.895 0.00 0.00 46.52 3.21
2142 3113 0.620030 TCCAGCAGTGTGCCATGTAT 59.380 50.000 0.00 0.00 46.52 2.29
2145 3116 0.322726 AGCAGTGTGCCATGTATGCA 60.323 50.000 0.00 0.00 46.52 3.96
2146 3117 0.742505 GCAGTGTGCCATGTATGCAT 59.257 50.000 3.79 3.79 41.46 3.96
2162 3133 9.060347 CATGTATGCATGGTTACTAAGAAGAAT 57.940 33.333 15.36 0.00 46.47 2.40
2163 3134 8.662781 TGTATGCATGGTTACTAAGAAGAATC 57.337 34.615 10.16 0.00 0.00 2.52
2165 3136 6.985188 TGCATGGTTACTAAGAAGAATCAC 57.015 37.500 0.00 0.00 0.00 3.06
2167 3138 6.116126 GCATGGTTACTAAGAAGAATCACCT 58.884 40.000 0.00 0.00 0.00 4.00
2168 3139 6.258947 GCATGGTTACTAAGAAGAATCACCTC 59.741 42.308 0.00 0.00 0.00 3.85
2169 3140 7.560368 CATGGTTACTAAGAAGAATCACCTCT 58.440 38.462 0.00 0.00 0.00 3.69
2171 3142 5.813157 GGTTACTAAGAAGAATCACCTCTGC 59.187 44.000 0.00 0.00 0.00 4.26
2172 3143 6.351456 GGTTACTAAGAAGAATCACCTCTGCT 60.351 42.308 0.00 0.00 32.09 4.24
2174 3145 6.215495 ACTAAGAAGAATCACCTCTGCTAC 57.785 41.667 0.00 0.00 29.11 3.58
2175 3146 5.717178 ACTAAGAAGAATCACCTCTGCTACA 59.283 40.000 0.00 0.00 29.11 2.74
2176 3147 4.734398 AGAAGAATCACCTCTGCTACAG 57.266 45.455 0.00 0.00 28.59 2.74
2177 3148 3.450457 AGAAGAATCACCTCTGCTACAGG 59.550 47.826 0.00 0.00 28.59 4.00
2179 3150 2.763448 AGAATCACCTCTGCTACAGGTC 59.237 50.000 0.00 0.00 42.85 3.85
2180 3151 2.541233 ATCACCTCTGCTACAGGTCT 57.459 50.000 0.00 0.00 42.85 3.85
2182 3153 0.534412 CACCTCTGCTACAGGTCTGG 59.466 60.000 2.87 0.00 42.85 3.86
2184 3155 0.820871 CCTCTGCTACAGGTCTGGAC 59.179 60.000 2.87 0.00 34.19 4.02
2185 3156 1.618345 CCTCTGCTACAGGTCTGGACT 60.618 57.143 2.87 0.00 34.19 3.85
2189 3160 4.157246 TCTGCTACAGGTCTGGACTTTTA 58.843 43.478 2.87 0.00 34.19 1.52
2190 3161 4.021368 TCTGCTACAGGTCTGGACTTTTAC 60.021 45.833 2.87 0.00 34.19 2.01
2191 3162 3.644265 TGCTACAGGTCTGGACTTTTACA 59.356 43.478 2.87 0.00 34.19 2.41
2192 3163 3.995048 GCTACAGGTCTGGACTTTTACAC 59.005 47.826 2.87 0.00 34.19 2.90
2193 3164 3.487120 ACAGGTCTGGACTTTTACACC 57.513 47.619 2.87 0.00 34.19 4.16
2194 3165 2.105993 ACAGGTCTGGACTTTTACACCC 59.894 50.000 2.87 0.00 34.19 4.61
2195 3166 2.105821 CAGGTCTGGACTTTTACACCCA 59.894 50.000 0.67 0.00 0.00 4.51
2197 3168 3.081804 GGTCTGGACTTTTACACCCATG 58.918 50.000 0.67 0.00 0.00 3.66
2199 3170 2.983192 TCTGGACTTTTACACCCATGGA 59.017 45.455 15.22 0.00 0.00 3.41
2202 3173 2.081462 GACTTTTACACCCATGGACCG 58.919 52.381 15.22 3.14 0.00 4.79
2203 3174 1.700739 ACTTTTACACCCATGGACCGA 59.299 47.619 15.22 0.00 0.00 4.69
2204 3175 2.106857 ACTTTTACACCCATGGACCGAA 59.893 45.455 15.22 0.00 0.00 4.30
2206 3177 3.443145 TTTACACCCATGGACCGAATT 57.557 42.857 15.22 0.00 0.00 2.17
2207 3178 4.571369 TTTACACCCATGGACCGAATTA 57.429 40.909 15.22 0.00 0.00 1.40
2208 3179 4.781775 TTACACCCATGGACCGAATTAT 57.218 40.909 15.22 0.00 0.00 1.28
2210 3181 3.287222 ACACCCATGGACCGAATTATTG 58.713 45.455 15.22 0.00 0.00 1.90
2212 3183 2.238521 CCCATGGACCGAATTATTGGG 58.761 52.381 15.22 4.42 33.93 4.12
2219 3190 3.992943 ACCGAATTATTGGGTCTGTGA 57.007 42.857 5.80 0.00 37.12 3.58
2220 3191 4.503714 ACCGAATTATTGGGTCTGTGAT 57.496 40.909 5.80 0.00 37.12 3.06
2222 3193 3.565482 CCGAATTATTGGGTCTGTGATGG 59.435 47.826 0.00 0.00 0.00 3.51
2223 3194 3.565482 CGAATTATTGGGTCTGTGATGGG 59.435 47.826 0.00 0.00 0.00 4.00
2225 3196 5.388654 GAATTATTGGGTCTGTGATGGGAT 58.611 41.667 0.00 0.00 0.00 3.85
2226 3197 4.879295 TTATTGGGTCTGTGATGGGATT 57.121 40.909 0.00 0.00 0.00 3.01
2227 3198 5.985175 TTATTGGGTCTGTGATGGGATTA 57.015 39.130 0.00 0.00 0.00 1.75
2228 3199 6.529084 TTATTGGGTCTGTGATGGGATTAT 57.471 37.500 0.00 0.00 0.00 1.28
2229 3200 7.640577 TTATTGGGTCTGTGATGGGATTATA 57.359 36.000 0.00 0.00 0.00 0.98
2230 3201 4.974645 TGGGTCTGTGATGGGATTATAC 57.025 45.455 0.00 0.00 0.00 1.47
2237 3208 2.375174 GTGATGGGATTATACAGGGCCA 59.625 50.000 6.18 0.00 0.00 5.36
2238 3209 3.059853 TGATGGGATTATACAGGGCCAA 58.940 45.455 6.18 0.00 0.00 4.52
2240 3211 1.780309 TGGGATTATACAGGGCCAAGG 59.220 52.381 6.18 0.00 0.00 3.61
2241 3212 1.547901 GGGATTATACAGGGCCAAGGC 60.548 57.143 6.18 1.52 41.06 4.35
2244 3215 3.500343 GATTATACAGGGCCAAGGCAAT 58.500 45.455 13.87 1.89 44.11 3.56
2245 3216 4.508405 GGATTATACAGGGCCAAGGCAATA 60.508 45.833 13.87 0.00 44.11 1.90
2246 3217 2.364972 ATACAGGGCCAAGGCAATAC 57.635 50.000 13.87 0.00 44.11 1.89
2247 3218 0.995803 TACAGGGCCAAGGCAATACA 59.004 50.000 13.87 0.00 44.11 2.29
2248 3219 0.336048 ACAGGGCCAAGGCAATACAT 59.664 50.000 13.87 0.00 44.11 2.29
2249 3220 1.035139 CAGGGCCAAGGCAATACATC 58.965 55.000 13.87 0.00 44.11 3.06
2250 3221 0.630673 AGGGCCAAGGCAATACATCA 59.369 50.000 13.87 0.00 44.11 3.07
2251 3222 1.035139 GGGCCAAGGCAATACATCAG 58.965 55.000 13.87 0.00 44.11 2.90
2252 3223 0.386838 GGCCAAGGCAATACATCAGC 59.613 55.000 13.87 0.00 44.11 4.26
2253 3224 1.105457 GCCAAGGCAATACATCAGCA 58.895 50.000 6.14 0.00 41.49 4.41
2254 3225 1.684983 GCCAAGGCAATACATCAGCAT 59.315 47.619 6.14 0.00 41.49 3.79
2256 3227 2.035449 CCAAGGCAATACATCAGCATGG 59.965 50.000 0.00 0.00 36.16 3.66
2258 3229 1.496001 AGGCAATACATCAGCATGGGA 59.504 47.619 0.00 0.00 36.16 4.37
2260 3231 2.694628 GGCAATACATCAGCATGGGAAA 59.305 45.455 0.00 0.00 36.16 3.13
2265 3236 1.483415 ACATCAGCATGGGAAATTGGC 59.517 47.619 0.00 0.00 36.16 4.52
2266 3237 1.483004 CATCAGCATGGGAAATTGGCA 59.517 47.619 0.00 0.00 36.16 4.92
2267 3238 1.642112 TCAGCATGGGAAATTGGCAA 58.358 45.000 0.68 0.68 36.16 4.52
2271 3242 1.935199 GCATGGGAAATTGGCAATTCG 59.065 47.619 24.51 10.83 0.00 3.34
2272 3243 1.935199 CATGGGAAATTGGCAATTCGC 59.065 47.619 24.51 22.50 41.28 4.70
2273 3244 1.265236 TGGGAAATTGGCAATTCGCT 58.735 45.000 24.51 10.46 41.91 4.93
2275 3246 1.001624 GGAAATTGGCAATTCGCTGC 58.998 50.000 24.51 11.78 41.91 5.25
2276 3247 1.672441 GGAAATTGGCAATTCGCTGCA 60.672 47.619 24.51 0.00 44.52 4.41
2280 3251 1.588824 TTGGCAATTCGCTGCAGAGG 61.589 55.000 20.43 8.53 44.52 3.69
2281 3252 1.746615 GGCAATTCGCTGCAGAGGA 60.747 57.895 20.43 10.15 44.52 3.71
2283 3254 0.179179 GCAATTCGCTGCAGAGGAAC 60.179 55.000 20.43 4.76 42.17 3.62
2284 3255 1.159285 CAATTCGCTGCAGAGGAACA 58.841 50.000 20.43 0.00 0.00 3.18
2285 3256 1.741706 CAATTCGCTGCAGAGGAACAT 59.258 47.619 20.43 9.64 0.00 2.71
2286 3257 1.376543 ATTCGCTGCAGAGGAACATG 58.623 50.000 20.43 0.00 0.00 3.21
2287 3258 0.035317 TTCGCTGCAGAGGAACATGT 59.965 50.000 20.43 0.00 0.00 3.21
2289 3260 1.002366 CGCTGCAGAGGAACATGTAC 58.998 55.000 20.43 0.00 0.00 2.90
2290 3261 1.404717 CGCTGCAGAGGAACATGTACT 60.405 52.381 20.43 0.00 0.00 2.73
2292 3263 3.676049 CGCTGCAGAGGAACATGTACTTA 60.676 47.826 20.43 0.00 0.00 2.24
2293 3264 3.868077 GCTGCAGAGGAACATGTACTTAG 59.132 47.826 20.43 0.00 0.00 2.18
2294 3265 4.382040 GCTGCAGAGGAACATGTACTTAGA 60.382 45.833 20.43 0.00 0.00 2.10
2295 3266 5.683509 GCTGCAGAGGAACATGTACTTAGAT 60.684 44.000 20.43 0.00 0.00 1.98
2297 3268 6.108687 TGCAGAGGAACATGTACTTAGATTG 58.891 40.000 0.00 0.00 0.00 2.67
2304 3275 3.202151 ACATGTACTTAGATTGGGTGGGG 59.798 47.826 0.00 0.00 0.00 4.96
2305 3276 3.208570 TGTACTTAGATTGGGTGGGGA 57.791 47.619 0.00 0.00 0.00 4.81
2307 3278 1.596496 ACTTAGATTGGGTGGGGAGG 58.404 55.000 0.00 0.00 0.00 4.30
2308 3279 1.082194 ACTTAGATTGGGTGGGGAGGA 59.918 52.381 0.00 0.00 0.00 3.71
2309 3280 2.205342 CTTAGATTGGGTGGGGAGGAA 58.795 52.381 0.00 0.00 0.00 3.36
2310 3281 1.591768 TAGATTGGGTGGGGAGGAAC 58.408 55.000 0.00 0.00 0.00 3.62
2320 3291 2.499685 GGAGGAACCCGGACGATG 59.500 66.667 0.73 0.00 0.00 3.84
2321 3292 2.202892 GAGGAACCCGGACGATGC 60.203 66.667 0.73 0.00 0.00 3.91
2323 3294 2.046700 GGAACCCGGACGATGCAA 60.047 61.111 0.73 0.00 0.00 4.08
2329 3300 2.650322 ACCCGGACGATGCAATTTATT 58.350 42.857 0.73 0.00 0.00 1.40
2330 3301 3.020984 ACCCGGACGATGCAATTTATTT 58.979 40.909 0.73 0.00 0.00 1.40
2331 3302 3.181491 ACCCGGACGATGCAATTTATTTG 60.181 43.478 0.73 0.00 38.43 2.32
2332 3303 3.371168 CCGGACGATGCAATTTATTTGG 58.629 45.455 0.00 0.00 35.75 3.28
2333 3304 3.066064 CCGGACGATGCAATTTATTTGGA 59.934 43.478 0.00 0.00 40.21 3.53
2334 3305 4.035017 CGGACGATGCAATTTATTTGGAC 58.965 43.478 0.00 0.00 38.59 4.02
2335 3306 4.035017 GGACGATGCAATTTATTTGGACG 58.965 43.478 0.00 0.00 38.59 4.79
2336 3307 4.201871 GGACGATGCAATTTATTTGGACGA 60.202 41.667 0.00 0.00 38.59 4.20
2337 3308 5.499139 ACGATGCAATTTATTTGGACGAT 57.501 34.783 0.00 0.00 38.59 3.73
2340 3311 6.253298 ACGATGCAATTTATTTGGACGATTTG 59.747 34.615 0.00 0.00 38.59 2.32
2342 3313 5.477510 TGCAATTTATTTGGACGATTTGCT 58.522 33.333 0.00 0.00 35.75 3.91
2343 3314 5.931146 TGCAATTTATTTGGACGATTTGCTT 59.069 32.000 0.00 0.00 35.75 3.91
2345 3316 7.763528 TGCAATTTATTTGGACGATTTGCTTAT 59.236 29.630 0.00 0.00 35.75 1.73
2347 3318 9.299963 CAATTTATTTGGACGATTTGCTTATGA 57.700 29.630 0.00 0.00 0.00 2.15
2349 3320 7.857734 TTATTTGGACGATTTGCTTATGAGA 57.142 32.000 0.00 0.00 0.00 3.27
2350 3321 6.757897 ATTTGGACGATTTGCTTATGAGAA 57.242 33.333 0.00 0.00 0.00 2.87
2352 3323 5.545658 TGGACGATTTGCTTATGAGAAAC 57.454 39.130 0.00 0.00 0.00 2.78
2354 3325 5.471797 TGGACGATTTGCTTATGAGAAACAA 59.528 36.000 0.00 0.00 0.00 2.83
2355 3326 6.150976 TGGACGATTTGCTTATGAGAAACAAT 59.849 34.615 0.00 0.00 0.00 2.71
2356 3327 6.470235 GGACGATTTGCTTATGAGAAACAATG 59.530 38.462 0.00 0.00 0.00 2.82
2358 3329 7.765307 ACGATTTGCTTATGAGAAACAATGAT 58.235 30.769 0.00 0.00 0.00 2.45
2359 3330 8.892723 ACGATTTGCTTATGAGAAACAATGATA 58.107 29.630 0.00 0.00 0.00 2.15
2360 3331 9.888878 CGATTTGCTTATGAGAAACAATGATAT 57.111 29.630 0.00 0.00 0.00 1.63
2372 3343 9.756461 GAGAAACAATGATATTGATGATGATCG 57.244 33.333 8.41 0.00 0.00 3.69
2373 3344 8.235226 AGAAACAATGATATTGATGATGATCGC 58.765 33.333 8.41 0.00 0.00 4.58
2374 3345 7.683437 AACAATGATATTGATGATGATCGCT 57.317 32.000 8.41 0.00 0.00 4.93
2375 3346 7.073342 ACAATGATATTGATGATGATCGCTG 57.927 36.000 8.41 0.00 0.00 5.18
2376 3347 6.093633 ACAATGATATTGATGATGATCGCTGG 59.906 38.462 8.41 0.00 0.00 4.85
2377 3348 4.510571 TGATATTGATGATGATCGCTGGG 58.489 43.478 0.00 0.00 0.00 4.45
2378 3349 2.945080 ATTGATGATGATCGCTGGGT 57.055 45.000 0.00 0.00 0.00 4.51
2379 3350 2.715749 TTGATGATGATCGCTGGGTT 57.284 45.000 0.00 0.00 0.00 4.11
2380 3351 2.715749 TGATGATGATCGCTGGGTTT 57.284 45.000 0.00 0.00 0.00 3.27
2382 3353 3.466836 TGATGATGATCGCTGGGTTTAC 58.533 45.455 0.00 0.00 0.00 2.01
2384 3355 1.206132 TGATGATCGCTGGGTTTACGT 59.794 47.619 0.00 0.00 0.00 3.57
2385 3356 1.859080 GATGATCGCTGGGTTTACGTC 59.141 52.381 0.00 0.00 0.00 4.34
2386 3357 0.604073 TGATCGCTGGGTTTACGTCA 59.396 50.000 0.00 0.00 0.00 4.35
2387 3358 0.997196 GATCGCTGGGTTTACGTCAC 59.003 55.000 0.00 0.00 0.00 3.67
2389 3360 0.598158 TCGCTGGGTTTACGTCACAC 60.598 55.000 0.00 0.00 0.00 3.82
2391 3362 0.584876 GCTGGGTTTACGTCACACAC 59.415 55.000 0.00 0.00 0.00 3.82
2392 3363 1.942677 CTGGGTTTACGTCACACACA 58.057 50.000 0.00 0.00 0.00 3.72
2395 3366 2.678836 TGGGTTTACGTCACACACAAAG 59.321 45.455 0.00 0.00 0.00 2.77
2397 3368 3.374678 GGGTTTACGTCACACACAAAGAA 59.625 43.478 0.00 0.00 0.00 2.52
2398 3369 4.336932 GGTTTACGTCACACACAAAGAAC 58.663 43.478 0.00 0.00 0.00 3.01
2399 3370 4.336932 GTTTACGTCACACACAAAGAACC 58.663 43.478 0.00 0.00 0.00 3.62
2401 3372 2.006888 ACGTCACACACAAAGAACCTG 58.993 47.619 0.00 0.00 0.00 4.00
2403 3374 2.639065 GTCACACACAAAGAACCTGGA 58.361 47.619 0.00 0.00 0.00 3.86
2404 3375 3.214328 GTCACACACAAAGAACCTGGAT 58.786 45.455 0.00 0.00 0.00 3.41
2406 3377 2.294233 CACACACAAAGAACCTGGATGG 59.706 50.000 0.00 0.00 42.93 3.51
2407 3378 2.174639 ACACACAAAGAACCTGGATGGA 59.825 45.455 0.00 0.00 39.71 3.41
2410 3381 2.816087 CACAAAGAACCTGGATGGAGTG 59.184 50.000 0.00 0.00 39.71 3.51
2411 3382 2.711009 ACAAAGAACCTGGATGGAGTGA 59.289 45.455 0.00 0.00 39.71 3.41
2413 3384 4.536090 ACAAAGAACCTGGATGGAGTGATA 59.464 41.667 0.00 0.00 39.71 2.15
2415 3386 4.000928 AGAACCTGGATGGAGTGATACT 57.999 45.455 0.00 0.00 39.71 2.12
2416 3387 3.708631 AGAACCTGGATGGAGTGATACTG 59.291 47.826 0.00 0.00 39.71 2.74
2417 3388 3.121929 ACCTGGATGGAGTGATACTGT 57.878 47.619 0.00 0.00 39.71 3.55
2418 3389 2.768527 ACCTGGATGGAGTGATACTGTG 59.231 50.000 0.00 0.00 39.71 3.66
2420 3391 2.433604 CTGGATGGAGTGATACTGTGCT 59.566 50.000 0.00 0.00 0.00 4.40
2424 3395 2.470990 TGGAGTGATACTGTGCTGGAT 58.529 47.619 0.00 0.00 0.00 3.41
2426 3397 2.224161 GGAGTGATACTGTGCTGGATCC 60.224 54.545 4.20 4.20 0.00 3.36
2427 3398 2.697751 GAGTGATACTGTGCTGGATCCT 59.302 50.000 14.23 0.00 0.00 3.24
2428 3399 2.433604 AGTGATACTGTGCTGGATCCTG 59.566 50.000 14.23 14.14 0.00 3.86
2429 3400 2.169352 GTGATACTGTGCTGGATCCTGT 59.831 50.000 18.82 8.03 0.00 4.00
2473 4042 4.811908 TGCAGATGAATCACCAACAAATG 58.188 39.130 0.00 0.00 0.00 2.32
2495 4064 4.815269 GCAATACCAATGTTGCCAGTTAA 58.185 39.130 0.00 0.00 44.73 2.01
2509 4078 4.022416 TGCCAGTTAACATGTTCCAACATC 60.022 41.667 15.85 8.45 46.10 3.06
2512 4081 5.335897 CCAGTTAACATGTTCCAACATCCAG 60.336 44.000 15.85 4.53 46.10 3.86
2556 4125 0.901124 ATCTCTCTCGCTGCACCTTT 59.099 50.000 0.00 0.00 0.00 3.11
2563 4132 3.994392 CTCTCGCTGCACCTTTAGTTTTA 59.006 43.478 0.00 0.00 0.00 1.52
2627 4196 4.440525 CCATCTGGACCATTGCACAAATAC 60.441 45.833 0.00 0.00 37.39 1.89
2687 4256 5.948162 ACATGTCATGTTTCCAGAAGCTATT 59.052 36.000 12.87 0.00 41.63 1.73
2723 4292 3.646637 AGGTATACAGATTGGTACTGGCC 59.353 47.826 5.01 0.00 39.38 5.36
2777 4346 1.815003 CCTCAAGGAGTTGAATGTGGC 59.185 52.381 0.00 0.00 42.27 5.01
3007 4582 1.153289 CCCCCATTGCTCGAGTCAG 60.153 63.158 15.13 1.92 0.00 3.51
3011 4586 2.354704 CCCCATTGCTCGAGTCAGTTAA 60.355 50.000 15.13 1.04 0.00 2.01
3154 4729 2.298729 GGCACAGCATTGAAAACCCTTA 59.701 45.455 0.00 0.00 0.00 2.69
3291 6082 0.179000 AGATCAGCACCGTCCAATCC 59.821 55.000 0.00 0.00 0.00 3.01
3404 6195 0.679640 TTAGGCACCAGGCGAATTGG 60.680 55.000 0.00 0.00 46.16 3.16
3476 6267 1.673665 CGCTTCTGCCCTTTCAGCT 60.674 57.895 0.00 0.00 34.19 4.24
3646 6450 1.730501 GCAAGCTGTCAGTGCTATCA 58.269 50.000 7.93 0.00 40.22 2.15
3698 6502 4.290942 CCACCTATTCCTACTCCAAGTCT 58.709 47.826 0.00 0.00 0.00 3.24
3780 6590 5.004726 GCAACAACACAACACTCAAAGAATC 59.995 40.000 0.00 0.00 0.00 2.52
3852 6662 4.129380 TGTTGTATGTGCATGATAGCTCC 58.871 43.478 0.00 0.00 34.99 4.70
3871 6681 0.389817 CTCCATCACTTGCGTTCCGA 60.390 55.000 0.00 0.00 0.00 4.55
4008 6818 2.437281 CCTGTCTACATTCTGGGCATCT 59.563 50.000 0.00 0.00 0.00 2.90
4040 6850 1.136305 GGCGTGCTACATCTGGAACTA 59.864 52.381 0.00 0.00 0.00 2.24
4155 6965 2.965831 GTCTGAGCATATGGACACCCTA 59.034 50.000 4.56 0.00 0.00 3.53
4467 7301 4.671590 TGGGACGGTCTCGAGGCA 62.672 66.667 20.37 0.00 40.11 4.75
4942 7931 6.279882 TGATTTGGTTTGGTTTGTCTTGATC 58.720 36.000 0.00 0.00 0.00 2.92
4949 7938 7.093727 TGGTTTGGTTTGTCTTGATCTTGTTTA 60.094 33.333 0.00 0.00 0.00 2.01
4950 7939 7.762159 GGTTTGGTTTGTCTTGATCTTGTTTAA 59.238 33.333 0.00 0.00 0.00 1.52
4968 7957 4.852134 TTAATTTGCTCAGCTTTGCTCA 57.148 36.364 0.00 0.00 36.40 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
274 710 0.948623 CCACGTCAATGCAACCTCGA 60.949 55.000 10.61 0.00 0.00 4.04
446 913 2.080286 TCTTTAGGAACAGACAGCGC 57.920 50.000 0.00 0.00 0.00 5.92
461 928 7.824289 TCTGTATGCAGCTGTACTATTTTCTTT 59.176 33.333 16.64 0.00 42.29 2.52
922 1481 4.564782 TGGTCAATCTGCAGAAATCTCT 57.435 40.909 22.50 0.00 0.00 3.10
963 1897 2.040278 TCCTTCAAGTGCCAGCAACTAT 59.960 45.455 0.00 0.00 0.00 2.12
976 1910 9.731819 CATAGTGAATCAAATCAATCCTTCAAG 57.268 33.333 0.00 0.00 0.00 3.02
1061 2002 5.855395 GCTAAAGAAATCAAGCAAGTCACAG 59.145 40.000 0.00 0.00 35.05 3.66
1089 2034 1.556911 TGAAGATCCCAGTTGAGCTCC 59.443 52.381 12.15 0.00 29.06 4.70
1106 2051 3.342719 TCTTGTCTGCACAACAACTGAA 58.657 40.909 5.93 0.00 37.61 3.02
1110 2055 7.698836 ATTTAATTCTTGTCTGCACAACAAC 57.301 32.000 5.93 0.00 37.61 3.32
1118 2063 8.131731 GGAATGACCTATTTAATTCTTGTCTGC 58.868 37.037 0.00 0.00 35.41 4.26
1181 2127 5.049198 TCAAACTTCAAATGCTAGCAGACAG 60.049 40.000 23.89 15.40 0.00 3.51
1182 2128 4.821260 TCAAACTTCAAATGCTAGCAGACA 59.179 37.500 23.89 3.94 0.00 3.41
1220 2167 2.337849 AGTACCAAAGACCCCGGTAAA 58.662 47.619 0.00 0.00 37.04 2.01
1222 2169 2.028561 AAGTACCAAAGACCCCGGTA 57.971 50.000 0.00 0.00 34.12 4.02
1225 2172 7.477494 CAAATAATTAAGTACCAAAGACCCCG 58.523 38.462 0.00 0.00 0.00 5.73
1226 2173 7.093684 TGCAAATAATTAAGTACCAAAGACCCC 60.094 37.037 0.00 0.00 0.00 4.95
1236 2183 6.483687 CCCGAGTGTGCAAATAATTAAGTAC 58.516 40.000 0.00 0.00 0.00 2.73
1243 2190 1.745087 CTGCCCGAGTGTGCAAATAAT 59.255 47.619 0.00 0.00 36.98 1.28
1257 2204 1.529226 TAAAACATGGTCACTGCCCG 58.471 50.000 0.00 0.00 0.00 6.13
1260 2207 9.051679 TGTATATACATAAAACATGGTCACTGC 57.948 33.333 11.62 0.00 0.00 4.40
1283 2230 3.751479 AGCAGTGATCAAGTGTGTGTA 57.249 42.857 0.00 0.00 0.00 2.90
1299 2246 4.692625 GTGTGTGCATATATAGGGAAGCAG 59.307 45.833 0.00 0.00 32.03 4.24
1341 2288 3.370061 GGCGCGTCATAACTAGAAGTTTT 59.630 43.478 5.47 0.00 39.51 2.43
1343 2290 2.165845 AGGCGCGTCATAACTAGAAGTT 59.834 45.455 15.58 0.00 41.97 2.66
1345 2292 2.120232 CAGGCGCGTCATAACTAGAAG 58.880 52.381 15.58 0.00 0.00 2.85
1358 2325 4.481112 GGCAAACCATCAGGCGCG 62.481 66.667 0.00 0.00 39.06 6.86
1374 2341 7.772757 AGCTTTATTTCTCTAAGTCTTCCATGG 59.227 37.037 4.97 4.97 0.00 3.66
1479 2450 6.737720 ACATCAATTATCTCTCCTACTGCA 57.262 37.500 0.00 0.00 0.00 4.41
1484 2455 8.213679 CCTCCAAAACATCAATTATCTCTCCTA 58.786 37.037 0.00 0.00 0.00 2.94
1487 2458 8.688747 ATCCTCCAAAACATCAATTATCTCTC 57.311 34.615 0.00 0.00 0.00 3.20
1539 2510 1.134640 CCACATCCATGCCAACCATTG 60.135 52.381 0.00 0.00 29.71 2.82
1577 2548 0.737715 CAGACGTTGAGCTACTGCCC 60.738 60.000 0.00 0.00 40.80 5.36
1580 2551 4.237724 TGATTTCAGACGTTGAGCTACTG 58.762 43.478 0.00 0.00 37.07 2.74
1584 2555 3.930336 TGATGATTTCAGACGTTGAGCT 58.070 40.909 0.00 0.00 37.07 4.09
1587 2558 7.200778 TGATTTTGATGATTTCAGACGTTGA 57.799 32.000 0.00 0.00 35.27 3.18
1641 2612 1.879380 CTCATGCTTTTCCACACCGAA 59.121 47.619 0.00 0.00 0.00 4.30
1676 2647 0.397816 ATCCAGCTCCTCCGCTACTT 60.398 55.000 0.00 0.00 38.41 2.24
1702 2673 3.697542 TCAAAGATGGCCATCACAGAATG 59.302 43.478 40.05 27.79 40.22 2.67
1704 2675 3.438216 TCAAAGATGGCCATCACAGAA 57.562 42.857 40.05 22.10 40.22 3.02
1706 2677 3.284617 TGATCAAAGATGGCCATCACAG 58.715 45.455 40.05 29.10 40.22 3.66
1722 2693 0.803380 CATCTGCGTCGCACTGATCA 60.803 55.000 17.58 0.00 33.79 2.92
1727 2698 0.103755 ATCATCATCTGCGTCGCACT 59.896 50.000 17.58 3.52 33.79 4.40
1736 2707 7.400599 TCTTTCCCTTTGAAATCATCATCTG 57.599 36.000 0.00 0.00 41.96 2.90
1737 2708 7.837689 TCATCTTTCCCTTTGAAATCATCATCT 59.162 33.333 0.00 0.00 41.96 2.90
1749 2720 6.940739 TCTAGAGTCTTCATCTTTCCCTTTG 58.059 40.000 0.00 0.00 0.00 2.77
1751 2722 5.660864 CCTCTAGAGTCTTCATCTTTCCCTT 59.339 44.000 18.42 0.00 0.00 3.95
1752 2723 5.208121 CCTCTAGAGTCTTCATCTTTCCCT 58.792 45.833 18.42 0.00 0.00 4.20
1766 2737 5.876691 ATCTGATATCACCCCTCTAGAGT 57.123 43.478 18.42 1.36 0.00 3.24
1783 2754 8.962912 TCAAATATCTCCCTTCTGATATCTGA 57.037 34.615 8.13 8.13 35.54 3.27
1848 2819 5.894298 AATCAATGTATCTGCTACTCCCA 57.106 39.130 0.00 0.00 0.00 4.37
1855 2826 8.209584 ACACTCATAGAAATCAATGTATCTGCT 58.790 33.333 0.00 0.00 0.00 4.24
1896 2867 4.536765 ACACTTTGTTCCTCAAGAATGGT 58.463 39.130 0.00 0.00 36.69 3.55
1897 2868 5.163519 ACAACACTTTGTTCCTCAAGAATGG 60.164 40.000 0.00 0.00 43.89 3.16
1898 2869 5.745294 CACAACACTTTGTTCCTCAAGAATG 59.255 40.000 0.00 0.00 43.89 2.67
1899 2870 5.163519 CCACAACACTTTGTTCCTCAAGAAT 60.164 40.000 0.00 0.00 43.89 2.40
1901 2872 3.694072 CCACAACACTTTGTTCCTCAAGA 59.306 43.478 0.00 0.00 43.89 3.02
1902 2873 3.694072 TCCACAACACTTTGTTCCTCAAG 59.306 43.478 0.00 0.00 43.89 3.02
1904 2875 3.013921 GTCCACAACACTTTGTTCCTCA 58.986 45.455 0.00 0.00 43.89 3.86
1905 2876 2.357952 GGTCCACAACACTTTGTTCCTC 59.642 50.000 0.00 0.00 43.89 3.71
1906 2877 2.025321 AGGTCCACAACACTTTGTTCCT 60.025 45.455 0.00 0.00 43.89 3.36
1907 2878 2.099098 CAGGTCCACAACACTTTGTTCC 59.901 50.000 0.00 0.00 43.89 3.62
1911 2882 0.385390 GCCAGGTCCACAACACTTTG 59.615 55.000 0.00 0.00 38.83 2.77
1912 2883 1.101049 CGCCAGGTCCACAACACTTT 61.101 55.000 0.00 0.00 0.00 2.66
1914 2885 2.111043 CGCCAGGTCCACAACACT 59.889 61.111 0.00 0.00 0.00 3.55
1916 2887 2.203139 CACGCCAGGTCCACAACA 60.203 61.111 0.00 0.00 0.00 3.33
1917 2888 2.978010 CCACGCCAGGTCCACAAC 60.978 66.667 0.00 0.00 0.00 3.32
1918 2889 4.263572 CCCACGCCAGGTCCACAA 62.264 66.667 0.00 0.00 0.00 3.33
1920 2891 4.394712 CTCCCACGCCAGGTCCAC 62.395 72.222 0.00 0.00 0.00 4.02
1923 2894 3.192103 AAACCTCCCACGCCAGGTC 62.192 63.158 0.00 0.00 42.61 3.85
1925 2896 2.359975 GAAACCTCCCACGCCAGG 60.360 66.667 0.00 0.00 35.69 4.45
1926 2897 2.742372 CGAAACCTCCCACGCCAG 60.742 66.667 0.00 0.00 0.00 4.85
1927 2898 4.323477 CCGAAACCTCCCACGCCA 62.323 66.667 0.00 0.00 0.00 5.69
1929 2900 4.699522 AGCCGAAACCTCCCACGC 62.700 66.667 0.00 0.00 0.00 5.34
1930 2901 2.032071 AAGCCGAAACCTCCCACG 59.968 61.111 0.00 0.00 0.00 4.94
1931 2902 1.971695 CCAAGCCGAAACCTCCCAC 60.972 63.158 0.00 0.00 0.00 4.61
1932 2903 2.406002 GACCAAGCCGAAACCTCCCA 62.406 60.000 0.00 0.00 0.00 4.37
1933 2904 1.674651 GACCAAGCCGAAACCTCCC 60.675 63.158 0.00 0.00 0.00 4.30
1934 2905 0.673956 GAGACCAAGCCGAAACCTCC 60.674 60.000 0.00 0.00 0.00 4.30
1936 2907 1.004918 CGAGACCAAGCCGAAACCT 60.005 57.895 0.00 0.00 0.00 3.50
1938 2909 1.860078 CACGAGACCAAGCCGAAAC 59.140 57.895 0.00 0.00 0.00 2.78
1939 2910 1.959226 GCACGAGACCAAGCCGAAA 60.959 57.895 0.00 0.00 0.00 3.46
1942 2913 1.517257 CTAGCACGAGACCAAGCCG 60.517 63.158 0.00 0.00 0.00 5.52
1943 2914 0.461961 ATCTAGCACGAGACCAAGCC 59.538 55.000 0.00 0.00 0.00 4.35
1944 2915 1.135139 TCATCTAGCACGAGACCAAGC 59.865 52.381 0.00 0.00 0.00 4.01
1945 2916 2.792890 CGTCATCTAGCACGAGACCAAG 60.793 54.545 0.00 0.00 38.32 3.61
1946 2917 1.132453 CGTCATCTAGCACGAGACCAA 59.868 52.381 0.00 0.00 38.32 3.67
1947 2918 0.733150 CGTCATCTAGCACGAGACCA 59.267 55.000 0.00 0.00 38.32 4.02
1948 2919 0.029567 CCGTCATCTAGCACGAGACC 59.970 60.000 9.50 0.00 38.32 3.85
1951 2922 1.101635 TCCCCGTCATCTAGCACGAG 61.102 60.000 9.50 0.00 38.32 4.18
1954 2925 2.213499 CAATTCCCCGTCATCTAGCAC 58.787 52.381 0.00 0.00 0.00 4.40
1955 2926 1.140852 CCAATTCCCCGTCATCTAGCA 59.859 52.381 0.00 0.00 0.00 3.49
1956 2927 1.416401 TCCAATTCCCCGTCATCTAGC 59.584 52.381 0.00 0.00 0.00 3.42
1957 2928 3.838244 TTCCAATTCCCCGTCATCTAG 57.162 47.619 0.00 0.00 0.00 2.43
1958 2929 4.577988 TTTTCCAATTCCCCGTCATCTA 57.422 40.909 0.00 0.00 0.00 1.98
1959 2930 3.449746 TTTTCCAATTCCCCGTCATCT 57.550 42.857 0.00 0.00 0.00 2.90
1960 2931 4.432712 CATTTTTCCAATTCCCCGTCATC 58.567 43.478 0.00 0.00 0.00 2.92
1962 2933 2.564947 CCATTTTTCCAATTCCCCGTCA 59.435 45.455 0.00 0.00 0.00 4.35
1964 2935 2.831526 CTCCATTTTTCCAATTCCCCGT 59.168 45.455 0.00 0.00 0.00 5.28
1965 2936 2.831526 ACTCCATTTTTCCAATTCCCCG 59.168 45.455 0.00 0.00 0.00 5.73
1966 2937 3.582647 ACACTCCATTTTTCCAATTCCCC 59.417 43.478 0.00 0.00 0.00 4.81
1967 2938 4.568956 CACACTCCATTTTTCCAATTCCC 58.431 43.478 0.00 0.00 0.00 3.97
1968 2939 3.996363 GCACACTCCATTTTTCCAATTCC 59.004 43.478 0.00 0.00 0.00 3.01
1969 2940 4.630111 TGCACACTCCATTTTTCCAATTC 58.370 39.130 0.00 0.00 0.00 2.17
1971 2942 3.896888 TCTGCACACTCCATTTTTCCAAT 59.103 39.130 0.00 0.00 0.00 3.16
1973 2944 2.622942 GTCTGCACACTCCATTTTTCCA 59.377 45.455 0.00 0.00 0.00 3.53
1974 2945 2.887152 AGTCTGCACACTCCATTTTTCC 59.113 45.455 0.00 0.00 0.00 3.13
1978 2949 4.655963 ACATTAGTCTGCACACTCCATTT 58.344 39.130 0.00 0.00 0.00 2.32
1979 2950 4.292186 ACATTAGTCTGCACACTCCATT 57.708 40.909 0.00 0.00 0.00 3.16
1980 2951 3.988976 ACATTAGTCTGCACACTCCAT 57.011 42.857 0.00 0.00 0.00 3.41
1981 2952 3.769739 AACATTAGTCTGCACACTCCA 57.230 42.857 0.00 0.00 0.00 3.86
1982 2953 5.239525 AGAAAAACATTAGTCTGCACACTCC 59.760 40.000 0.00 0.00 0.00 3.85
1983 2954 6.017934 TGAGAAAAACATTAGTCTGCACACTC 60.018 38.462 0.00 0.00 0.00 3.51
1984 2955 5.822519 TGAGAAAAACATTAGTCTGCACACT 59.177 36.000 0.00 0.00 0.00 3.55
1985 2956 6.060028 TGAGAAAAACATTAGTCTGCACAC 57.940 37.500 0.00 0.00 0.00 3.82
1986 2957 6.691754 TTGAGAAAAACATTAGTCTGCACA 57.308 33.333 0.00 0.00 0.00 4.57
1990 2961 7.609532 AGAGGGATTGAGAAAAACATTAGTCTG 59.390 37.037 0.00 0.00 0.00 3.51
1991 2962 7.694093 AGAGGGATTGAGAAAAACATTAGTCT 58.306 34.615 0.00 0.00 0.00 3.24
1992 2963 7.066404 GGAGAGGGATTGAGAAAAACATTAGTC 59.934 40.741 0.00 0.00 0.00 2.59
1993 2964 6.887002 GGAGAGGGATTGAGAAAAACATTAGT 59.113 38.462 0.00 0.00 0.00 2.24
1994 2965 7.066766 CAGGAGAGGGATTGAGAAAAACATTAG 59.933 40.741 0.00 0.00 0.00 1.73
1995 2966 6.886459 CAGGAGAGGGATTGAGAAAAACATTA 59.114 38.462 0.00 0.00 0.00 1.90
1996 2967 5.713861 CAGGAGAGGGATTGAGAAAAACATT 59.286 40.000 0.00 0.00 0.00 2.71
1997 2968 5.259632 CAGGAGAGGGATTGAGAAAAACAT 58.740 41.667 0.00 0.00 0.00 2.71
1999 2970 4.013050 CCAGGAGAGGGATTGAGAAAAAC 58.987 47.826 0.00 0.00 0.00 2.43
2001 2972 3.264450 GTCCAGGAGAGGGATTGAGAAAA 59.736 47.826 0.00 0.00 36.67 2.29
2002 2973 2.840651 GTCCAGGAGAGGGATTGAGAAA 59.159 50.000 0.00 0.00 36.67 2.52
2003 2974 2.472029 GTCCAGGAGAGGGATTGAGAA 58.528 52.381 0.00 0.00 36.67 2.87
2005 2976 0.749649 CGTCCAGGAGAGGGATTGAG 59.250 60.000 0.00 0.00 36.67 3.02
2007 2978 0.176680 CACGTCCAGGAGAGGGATTG 59.823 60.000 0.00 0.00 36.67 2.67
2009 2980 0.396417 CTCACGTCCAGGAGAGGGAT 60.396 60.000 0.00 0.00 36.67 3.85
2010 2981 1.000771 CTCACGTCCAGGAGAGGGA 60.001 63.158 0.00 0.00 34.56 4.20
2011 2982 2.055042 CCTCACGTCCAGGAGAGGG 61.055 68.421 13.53 1.99 40.45 4.30
2012 2983 0.612174 TTCCTCACGTCCAGGAGAGG 60.612 60.000 14.78 14.78 41.27 3.69
2013 2984 0.814457 CTTCCTCACGTCCAGGAGAG 59.186 60.000 11.73 9.23 41.27 3.20
2014 2985 0.404426 TCTTCCTCACGTCCAGGAGA 59.596 55.000 11.73 9.37 41.27 3.71
2015 2986 1.257743 TTCTTCCTCACGTCCAGGAG 58.742 55.000 11.73 3.61 41.27 3.69
2018 2989 1.734465 GCAATTCTTCCTCACGTCCAG 59.266 52.381 0.00 0.00 0.00 3.86
2019 2990 1.071542 TGCAATTCTTCCTCACGTCCA 59.928 47.619 0.00 0.00 0.00 4.02
2021 2992 1.734465 CCTGCAATTCTTCCTCACGTC 59.266 52.381 0.00 0.00 0.00 4.34
2022 2993 1.347707 TCCTGCAATTCTTCCTCACGT 59.652 47.619 0.00 0.00 0.00 4.49
2025 2996 3.431346 CGAGATCCTGCAATTCTTCCTCA 60.431 47.826 0.00 0.00 0.00 3.86
2027 2998 2.503356 ACGAGATCCTGCAATTCTTCCT 59.497 45.455 0.00 0.00 0.00 3.36
2028 2999 2.911484 ACGAGATCCTGCAATTCTTCC 58.089 47.619 0.00 0.00 0.00 3.46
2032 3003 2.541762 GCACTACGAGATCCTGCAATTC 59.458 50.000 0.00 0.00 0.00 2.17
2047 3018 1.805945 CGGCCTCTTCACGCACTAC 60.806 63.158 0.00 0.00 0.00 2.73
2048 3019 1.934220 CTCGGCCTCTTCACGCACTA 61.934 60.000 0.00 0.00 0.00 2.74
2049 3020 3.288308 CTCGGCCTCTTCACGCACT 62.288 63.158 0.00 0.00 0.00 4.40
2050 3021 2.811317 CTCGGCCTCTTCACGCAC 60.811 66.667 0.00 0.00 0.00 5.34
2051 3022 4.069232 CCTCGGCCTCTTCACGCA 62.069 66.667 0.00 0.00 0.00 5.24
2053 3024 2.492090 CTCCTCGGCCTCTTCACG 59.508 66.667 0.00 0.00 0.00 4.35
2055 3026 1.682684 GACCTCCTCGGCCTCTTCA 60.683 63.158 0.00 0.00 35.61 3.02
2058 3029 3.999297 GACGACCTCCTCGGCCTCT 62.999 68.421 0.00 0.00 45.73 3.69
2059 3030 3.519930 GACGACCTCCTCGGCCTC 61.520 72.222 0.00 0.00 45.73 4.70
2064 3035 2.178521 CGGTTGACGACCTCCTCG 59.821 66.667 10.26 0.00 46.92 4.63
2065 3036 2.126031 GCGGTTGACGACCTCCTC 60.126 66.667 10.26 0.00 46.92 3.71
2067 3038 2.737376 GTGCGGTTGACGACCTCC 60.737 66.667 10.26 1.83 46.92 4.30
2068 3039 3.103911 CGTGCGGTTGACGACCTC 61.104 66.667 10.26 2.44 46.92 3.85
2075 3046 2.032634 GCAATCCTCGTGCGGTTGA 61.033 57.895 3.98 0.00 31.20 3.18
2076 3047 2.480555 GCAATCCTCGTGCGGTTG 59.519 61.111 0.00 0.00 31.20 3.77
2081 3052 3.567797 GCTCCGCAATCCTCGTGC 61.568 66.667 0.00 0.00 38.68 5.34
2082 3053 2.892425 GGCTCCGCAATCCTCGTG 60.892 66.667 0.00 0.00 0.00 4.35
2083 3054 3.077556 AGGCTCCGCAATCCTCGT 61.078 61.111 0.00 0.00 0.00 4.18
2084 3055 2.587194 CAGGCTCCGCAATCCTCG 60.587 66.667 0.00 0.00 0.00 4.63
2085 3056 2.203126 CCAGGCTCCGCAATCCTC 60.203 66.667 0.00 0.00 0.00 3.71
2090 3061 4.096003 GGTAGCCAGGCTCCGCAA 62.096 66.667 20.38 0.00 40.44 4.85
2092 3063 4.537433 CAGGTAGCCAGGCTCCGC 62.537 72.222 20.38 9.70 40.44 5.54
2093 3064 2.359169 TTCAGGTAGCCAGGCTCCG 61.359 63.158 20.38 14.48 40.44 4.63
2094 3065 1.222113 GTTCAGGTAGCCAGGCTCC 59.778 63.158 20.38 18.80 40.44 4.70
2097 3068 1.377333 GTGGTTCAGGTAGCCAGGC 60.377 63.158 1.84 1.84 39.46 4.85
2099 3070 1.611673 CCTTGTGGTTCAGGTAGCCAG 60.612 57.143 0.00 0.00 39.46 4.85
2106 3077 1.697432 TGGACTACCTTGTGGTTCAGG 59.303 52.381 0.00 0.00 46.05 3.86
2107 3078 3.045601 CTGGACTACCTTGTGGTTCAG 57.954 52.381 4.86 4.86 46.05 3.02
2108 3079 1.071699 GCTGGACTACCTTGTGGTTCA 59.928 52.381 0.00 0.00 46.05 3.18
2110 3081 1.072331 CTGCTGGACTACCTTGTGGTT 59.928 52.381 0.00 0.00 46.05 3.67
2113 3084 1.070758 ACACTGCTGGACTACCTTGTG 59.929 52.381 0.00 0.00 37.04 3.33
2115 3086 1.800805 CACACTGCTGGACTACCTTG 58.199 55.000 0.00 0.00 37.04 3.61
2117 3088 1.674057 GCACACTGCTGGACTACCT 59.326 57.895 0.00 0.00 40.96 3.08
2138 3109 8.264347 TGATTCTTCTTAGTAACCATGCATACA 58.736 33.333 0.00 0.00 0.00 2.29
2139 3110 8.552034 GTGATTCTTCTTAGTAACCATGCATAC 58.448 37.037 0.00 0.00 0.00 2.39
2140 3111 7.715249 GGTGATTCTTCTTAGTAACCATGCATA 59.285 37.037 0.00 0.00 0.00 3.14
2142 3113 5.880332 GGTGATTCTTCTTAGTAACCATGCA 59.120 40.000 0.00 0.00 0.00 3.96
2145 3116 7.560368 CAGAGGTGATTCTTCTTAGTAACCAT 58.440 38.462 0.00 0.00 29.81 3.55
2146 3117 6.574465 GCAGAGGTGATTCTTCTTAGTAACCA 60.574 42.308 0.00 0.00 29.81 3.67
2148 3119 6.635755 AGCAGAGGTGATTCTTCTTAGTAAC 58.364 40.000 0.00 0.00 29.81 2.50
2150 3121 6.890268 TGTAGCAGAGGTGATTCTTCTTAGTA 59.110 38.462 0.00 0.00 29.81 1.82
2151 3122 5.717178 TGTAGCAGAGGTGATTCTTCTTAGT 59.283 40.000 0.00 0.00 29.81 2.24
2153 3124 5.127845 CCTGTAGCAGAGGTGATTCTTCTTA 59.872 44.000 0.00 0.00 32.44 2.10
2156 3127 3.196685 ACCTGTAGCAGAGGTGATTCTTC 59.803 47.826 4.54 0.00 42.56 2.87
2157 3128 3.177228 ACCTGTAGCAGAGGTGATTCTT 58.823 45.455 4.54 0.00 42.56 2.52
2158 3129 2.763448 GACCTGTAGCAGAGGTGATTCT 59.237 50.000 9.23 0.00 44.28 2.40
2159 3130 2.763448 AGACCTGTAGCAGAGGTGATTC 59.237 50.000 9.23 0.00 44.28 2.52
2160 3131 2.499289 CAGACCTGTAGCAGAGGTGATT 59.501 50.000 9.23 0.00 44.28 2.57
2162 3133 1.550327 CAGACCTGTAGCAGAGGTGA 58.450 55.000 9.23 0.00 44.28 4.02
2163 3134 0.534412 CCAGACCTGTAGCAGAGGTG 59.466 60.000 9.23 0.00 44.28 4.00
2165 3136 0.820871 GTCCAGACCTGTAGCAGAGG 59.179 60.000 0.00 0.00 32.44 3.69
2167 3138 2.310779 AAGTCCAGACCTGTAGCAGA 57.689 50.000 0.00 0.00 32.44 4.26
2168 3139 3.409026 AAAAGTCCAGACCTGTAGCAG 57.591 47.619 0.00 0.00 0.00 4.24
2169 3140 3.644265 TGTAAAAGTCCAGACCTGTAGCA 59.356 43.478 0.00 0.00 0.00 3.49
2171 3142 4.562963 GGGTGTAAAAGTCCAGACCTGTAG 60.563 50.000 0.00 0.00 0.00 2.74
2172 3143 3.325716 GGGTGTAAAAGTCCAGACCTGTA 59.674 47.826 0.00 0.00 0.00 2.74
2174 3145 2.105821 TGGGTGTAAAAGTCCAGACCTG 59.894 50.000 0.00 0.00 0.00 4.00
2175 3146 2.414612 TGGGTGTAAAAGTCCAGACCT 58.585 47.619 0.00 0.00 0.00 3.85
2176 3147 2.943036 TGGGTGTAAAAGTCCAGACC 57.057 50.000 0.00 0.00 0.00 3.85
2177 3148 3.081804 CCATGGGTGTAAAAGTCCAGAC 58.918 50.000 2.85 0.00 32.30 3.51
2179 3150 3.081804 GTCCATGGGTGTAAAAGTCCAG 58.918 50.000 13.02 0.00 32.30 3.86
2180 3151 2.224917 GGTCCATGGGTGTAAAAGTCCA 60.225 50.000 13.02 0.00 0.00 4.02
2182 3153 2.081462 CGGTCCATGGGTGTAAAAGTC 58.919 52.381 13.02 0.00 0.00 3.01
2184 3155 2.483014 TCGGTCCATGGGTGTAAAAG 57.517 50.000 13.02 0.00 0.00 2.27
2185 3156 2.953284 TTCGGTCCATGGGTGTAAAA 57.047 45.000 13.02 0.00 0.00 1.52
2189 3160 3.287222 CAATAATTCGGTCCATGGGTGT 58.713 45.455 13.02 0.00 0.00 4.16
2190 3161 2.622942 CCAATAATTCGGTCCATGGGTG 59.377 50.000 13.02 1.92 0.00 4.61
2191 3162 2.424234 CCCAATAATTCGGTCCATGGGT 60.424 50.000 13.02 0.00 40.89 4.51
2192 3163 2.238521 CCCAATAATTCGGTCCATGGG 58.761 52.381 13.02 0.00 40.02 4.00
2193 3164 2.884639 GACCCAATAATTCGGTCCATGG 59.115 50.000 4.97 4.97 40.23 3.66
2194 3165 3.565482 CAGACCCAATAATTCGGTCCATG 59.435 47.826 7.90 0.00 46.08 3.66
2195 3166 3.202151 ACAGACCCAATAATTCGGTCCAT 59.798 43.478 7.90 0.00 46.08 3.41
2197 3168 2.943033 CACAGACCCAATAATTCGGTCC 59.057 50.000 7.90 0.00 46.08 4.46
2199 3170 3.992943 TCACAGACCCAATAATTCGGT 57.007 42.857 0.00 0.00 0.00 4.69
2202 3173 4.792068 TCCCATCACAGACCCAATAATTC 58.208 43.478 0.00 0.00 0.00 2.17
2203 3174 4.879295 TCCCATCACAGACCCAATAATT 57.121 40.909 0.00 0.00 0.00 1.40
2204 3175 5.408079 AATCCCATCACAGACCCAATAAT 57.592 39.130 0.00 0.00 0.00 1.28
2206 3177 6.560687 TGTATAATCCCATCACAGACCCAATA 59.439 38.462 0.00 0.00 0.00 1.90
2207 3178 5.372363 TGTATAATCCCATCACAGACCCAAT 59.628 40.000 0.00 0.00 0.00 3.16
2208 3179 4.724293 TGTATAATCCCATCACAGACCCAA 59.276 41.667 0.00 0.00 0.00 4.12
2210 3181 4.263068 CCTGTATAATCCCATCACAGACCC 60.263 50.000 1.75 0.00 39.13 4.46
2212 3183 4.804261 GCCCTGTATAATCCCATCACAGAC 60.804 50.000 1.75 0.00 39.13 3.51
2215 3186 2.375174 GGCCCTGTATAATCCCATCACA 59.625 50.000 0.00 0.00 0.00 3.58
2219 3190 2.379907 CCTTGGCCCTGTATAATCCCAT 59.620 50.000 0.00 0.00 0.00 4.00
2220 3191 1.780309 CCTTGGCCCTGTATAATCCCA 59.220 52.381 0.00 0.00 0.00 4.37
2222 3193 1.144913 TGCCTTGGCCCTGTATAATCC 59.855 52.381 9.35 0.00 0.00 3.01
2223 3194 2.656947 TGCCTTGGCCCTGTATAATC 57.343 50.000 9.35 0.00 0.00 1.75
2225 3196 3.203263 TGTATTGCCTTGGCCCTGTATAA 59.797 43.478 9.35 0.00 0.00 0.98
2226 3197 2.780592 TGTATTGCCTTGGCCCTGTATA 59.219 45.455 9.35 0.00 0.00 1.47
2227 3198 1.568597 TGTATTGCCTTGGCCCTGTAT 59.431 47.619 9.35 0.00 0.00 2.29
2228 3199 0.995803 TGTATTGCCTTGGCCCTGTA 59.004 50.000 9.35 0.00 0.00 2.74
2229 3200 0.336048 ATGTATTGCCTTGGCCCTGT 59.664 50.000 9.35 0.00 0.00 4.00
2230 3201 1.035139 GATGTATTGCCTTGGCCCTG 58.965 55.000 9.35 0.00 0.00 4.45
2237 3208 2.091720 TCCCATGCTGATGTATTGCCTT 60.092 45.455 0.00 0.00 0.00 4.35
2238 3209 1.496001 TCCCATGCTGATGTATTGCCT 59.504 47.619 0.00 0.00 0.00 4.75
2240 3211 4.595762 ATTTCCCATGCTGATGTATTGC 57.404 40.909 0.00 0.00 0.00 3.56
2241 3212 5.294356 CCAATTTCCCATGCTGATGTATTG 58.706 41.667 0.00 0.00 0.00 1.90
2244 3215 2.694628 GCCAATTTCCCATGCTGATGTA 59.305 45.455 0.00 0.00 0.00 2.29
2245 3216 1.483415 GCCAATTTCCCATGCTGATGT 59.517 47.619 0.00 0.00 0.00 3.06
2246 3217 1.483004 TGCCAATTTCCCATGCTGATG 59.517 47.619 0.00 0.00 0.00 3.07
2247 3218 1.868713 TGCCAATTTCCCATGCTGAT 58.131 45.000 0.00 0.00 0.00 2.90
2248 3219 1.642112 TTGCCAATTTCCCATGCTGA 58.358 45.000 0.00 0.00 0.00 4.26
2249 3220 2.702592 ATTGCCAATTTCCCATGCTG 57.297 45.000 0.00 0.00 0.00 4.41
2250 3221 2.419021 CGAATTGCCAATTTCCCATGCT 60.419 45.455 3.82 0.00 0.00 3.79
2251 3222 1.935199 CGAATTGCCAATTTCCCATGC 59.065 47.619 3.82 0.00 0.00 4.06
2252 3223 1.935199 GCGAATTGCCAATTTCCCATG 59.065 47.619 3.82 0.00 37.76 3.66
2253 3224 2.314323 GCGAATTGCCAATTTCCCAT 57.686 45.000 3.82 0.00 37.76 4.00
2254 3225 3.830679 GCGAATTGCCAATTTCCCA 57.169 47.368 3.82 0.00 37.76 4.37
2265 3236 1.159285 TGTTCCTCTGCAGCGAATTG 58.841 50.000 9.47 0.00 0.00 2.32
2266 3237 1.741706 CATGTTCCTCTGCAGCGAATT 59.258 47.619 9.47 2.90 0.00 2.17
2267 3238 1.339438 ACATGTTCCTCTGCAGCGAAT 60.339 47.619 9.47 0.00 0.00 3.34
2271 3242 2.393271 AGTACATGTTCCTCTGCAGC 57.607 50.000 9.47 0.00 0.00 5.25
2272 3243 5.330455 TCTAAGTACATGTTCCTCTGCAG 57.670 43.478 7.63 7.63 0.00 4.41
2273 3244 5.939764 ATCTAAGTACATGTTCCTCTGCA 57.060 39.130 2.30 0.00 0.00 4.41
2275 3246 6.051717 CCCAATCTAAGTACATGTTCCTCTG 58.948 44.000 2.30 0.00 0.00 3.35
2276 3247 5.726793 ACCCAATCTAAGTACATGTTCCTCT 59.273 40.000 2.30 0.00 0.00 3.69
2280 3251 4.881850 CCCACCCAATCTAAGTACATGTTC 59.118 45.833 2.30 0.00 0.00 3.18
2281 3252 4.325030 CCCCACCCAATCTAAGTACATGTT 60.325 45.833 2.30 0.00 0.00 2.71
2283 3254 3.458118 TCCCCACCCAATCTAAGTACATG 59.542 47.826 0.00 0.00 0.00 3.21
2284 3255 3.716872 CTCCCCACCCAATCTAAGTACAT 59.283 47.826 0.00 0.00 0.00 2.29
2285 3256 3.112263 CTCCCCACCCAATCTAAGTACA 58.888 50.000 0.00 0.00 0.00 2.90
2286 3257 2.438392 CCTCCCCACCCAATCTAAGTAC 59.562 54.545 0.00 0.00 0.00 2.73
2287 3258 2.319747 TCCTCCCCACCCAATCTAAGTA 59.680 50.000 0.00 0.00 0.00 2.24
2289 3260 1.893315 TCCTCCCCACCCAATCTAAG 58.107 55.000 0.00 0.00 0.00 2.18
2290 3261 1.920351 GTTCCTCCCCACCCAATCTAA 59.080 52.381 0.00 0.00 0.00 2.10
2292 3263 1.214992 GGTTCCTCCCCACCCAATCT 61.215 60.000 0.00 0.00 0.00 2.40
2293 3264 1.306633 GGTTCCTCCCCACCCAATC 59.693 63.158 0.00 0.00 0.00 2.67
2294 3265 3.520550 GGTTCCTCCCCACCCAAT 58.479 61.111 0.00 0.00 0.00 3.16
2304 3275 2.202892 GCATCGTCCGGGTTCCTC 60.203 66.667 0.00 0.00 0.00 3.71
2305 3276 1.910580 ATTGCATCGTCCGGGTTCCT 61.911 55.000 0.00 0.00 0.00 3.36
2307 3278 0.808755 AAATTGCATCGTCCGGGTTC 59.191 50.000 0.00 0.00 0.00 3.62
2308 3279 2.116827 TAAATTGCATCGTCCGGGTT 57.883 45.000 0.00 0.00 0.00 4.11
2309 3280 2.341846 ATAAATTGCATCGTCCGGGT 57.658 45.000 0.00 0.00 0.00 5.28
2310 3281 3.371168 CAAATAAATTGCATCGTCCGGG 58.629 45.455 0.00 0.00 31.00 5.73
2312 3283 4.035017 GTCCAAATAAATTGCATCGTCCG 58.965 43.478 0.00 0.00 37.73 4.79
2313 3284 4.035017 CGTCCAAATAAATTGCATCGTCC 58.965 43.478 0.00 0.00 37.73 4.79
2314 3285 4.904116 TCGTCCAAATAAATTGCATCGTC 58.096 39.130 0.00 0.00 37.73 4.20
2315 3286 4.955925 TCGTCCAAATAAATTGCATCGT 57.044 36.364 0.00 0.00 37.73 3.73
2316 3287 6.630015 CAAATCGTCCAAATAAATTGCATCG 58.370 36.000 0.00 0.00 37.73 3.84
2317 3288 6.256321 AGCAAATCGTCCAAATAAATTGCATC 59.744 34.615 9.46 0.00 43.12 3.91
2318 3289 6.108015 AGCAAATCGTCCAAATAAATTGCAT 58.892 32.000 9.46 0.00 43.12 3.96
2320 3291 6.407475 AAGCAAATCGTCCAAATAAATTGC 57.593 33.333 0.00 0.00 41.52 3.56
2321 3292 9.299963 TCATAAGCAAATCGTCCAAATAAATTG 57.700 29.630 0.00 0.00 38.84 2.32
2323 3294 8.902806 TCTCATAAGCAAATCGTCCAAATAAAT 58.097 29.630 0.00 0.00 0.00 1.40
2329 3300 5.471797 TGTTTCTCATAAGCAAATCGTCCAA 59.528 36.000 0.00 0.00 0.00 3.53
2330 3301 5.000591 TGTTTCTCATAAGCAAATCGTCCA 58.999 37.500 0.00 0.00 0.00 4.02
2331 3302 5.545658 TGTTTCTCATAAGCAAATCGTCC 57.454 39.130 0.00 0.00 0.00 4.79
2332 3303 7.243487 TCATTGTTTCTCATAAGCAAATCGTC 58.757 34.615 0.00 0.00 0.00 4.20
2333 3304 7.144722 TCATTGTTTCTCATAAGCAAATCGT 57.855 32.000 0.00 0.00 0.00 3.73
2334 3305 9.888878 ATATCATTGTTTCTCATAAGCAAATCG 57.111 29.630 0.00 0.00 0.00 3.34
2347 3318 8.235226 GCGATCATCATCAATATCATTGTTTCT 58.765 33.333 0.00 0.00 0.00 2.52
2349 3320 8.021396 CAGCGATCATCATCAATATCATTGTTT 58.979 33.333 0.00 0.00 0.00 2.83
2350 3321 7.361799 CCAGCGATCATCATCAATATCATTGTT 60.362 37.037 0.00 0.00 0.00 2.83
2352 3323 6.458342 CCCAGCGATCATCATCAATATCATTG 60.458 42.308 0.00 0.00 0.00 2.82
2354 3325 5.123936 CCCAGCGATCATCATCAATATCAT 58.876 41.667 0.00 0.00 0.00 2.45
2355 3326 4.019950 ACCCAGCGATCATCATCAATATCA 60.020 41.667 0.00 0.00 0.00 2.15
2356 3327 4.511527 ACCCAGCGATCATCATCAATATC 58.488 43.478 0.00 0.00 0.00 1.63
2358 3329 4.356405 AACCCAGCGATCATCATCAATA 57.644 40.909 0.00 0.00 0.00 1.90
2359 3330 2.945080 ACCCAGCGATCATCATCAAT 57.055 45.000 0.00 0.00 0.00 2.57
2360 3331 2.715749 AACCCAGCGATCATCATCAA 57.284 45.000 0.00 0.00 0.00 2.57
2362 3333 2.476619 CGTAAACCCAGCGATCATCATC 59.523 50.000 0.00 0.00 0.00 2.92
2364 3335 1.206132 ACGTAAACCCAGCGATCATCA 59.794 47.619 0.00 0.00 0.00 3.07
2369 3340 0.319083 TGTGACGTAAACCCAGCGAT 59.681 50.000 0.00 0.00 0.00 4.58
2370 3341 0.598158 GTGTGACGTAAACCCAGCGA 60.598 55.000 0.00 0.00 0.00 4.93
2371 3342 0.876777 TGTGTGACGTAAACCCAGCG 60.877 55.000 0.00 0.00 0.00 5.18
2372 3343 0.584876 GTGTGTGACGTAAACCCAGC 59.415 55.000 0.00 0.00 0.00 4.85
2373 3344 1.942677 TGTGTGTGACGTAAACCCAG 58.057 50.000 0.00 0.00 0.00 4.45
2374 3345 2.398252 TTGTGTGTGACGTAAACCCA 57.602 45.000 0.00 0.00 0.00 4.51
2375 3346 2.937799 TCTTTGTGTGTGACGTAAACCC 59.062 45.455 0.00 0.00 0.00 4.11
2376 3347 4.336932 GTTCTTTGTGTGTGACGTAAACC 58.663 43.478 0.00 0.00 0.00 3.27
2377 3348 4.093850 AGGTTCTTTGTGTGTGACGTAAAC 59.906 41.667 0.00 0.00 0.00 2.01
2378 3349 4.093703 CAGGTTCTTTGTGTGTGACGTAAA 59.906 41.667 0.00 0.00 0.00 2.01
2379 3350 3.619483 CAGGTTCTTTGTGTGTGACGTAA 59.381 43.478 0.00 0.00 0.00 3.18
2380 3351 3.191669 CAGGTTCTTTGTGTGTGACGTA 58.808 45.455 0.00 0.00 0.00 3.57
2382 3353 1.330521 CCAGGTTCTTTGTGTGTGACG 59.669 52.381 0.00 0.00 0.00 4.35
2384 3355 3.213506 CATCCAGGTTCTTTGTGTGTGA 58.786 45.455 0.00 0.00 0.00 3.58
2385 3356 2.294233 CCATCCAGGTTCTTTGTGTGTG 59.706 50.000 0.00 0.00 0.00 3.82
2386 3357 2.174639 TCCATCCAGGTTCTTTGTGTGT 59.825 45.455 0.00 0.00 39.02 3.72
2387 3358 2.816087 CTCCATCCAGGTTCTTTGTGTG 59.184 50.000 0.00 0.00 39.02 3.82
2389 3360 2.816087 CACTCCATCCAGGTTCTTTGTG 59.184 50.000 0.00 0.00 39.02 3.33
2391 3362 3.423539 TCACTCCATCCAGGTTCTTTG 57.576 47.619 0.00 0.00 39.02 2.77
2392 3363 4.785376 AGTATCACTCCATCCAGGTTCTTT 59.215 41.667 0.00 0.00 39.02 2.52
2395 3366 3.452627 ACAGTATCACTCCATCCAGGTTC 59.547 47.826 0.00 0.00 39.02 3.62
2397 3368 2.768527 CACAGTATCACTCCATCCAGGT 59.231 50.000 0.00 0.00 39.02 4.00
2398 3369 2.484417 GCACAGTATCACTCCATCCAGG 60.484 54.545 0.00 0.00 39.47 4.45
2399 3370 2.433604 AGCACAGTATCACTCCATCCAG 59.566 50.000 0.00 0.00 0.00 3.86
2401 3372 2.484417 CCAGCACAGTATCACTCCATCC 60.484 54.545 0.00 0.00 0.00 3.51
2403 3374 2.470990 TCCAGCACAGTATCACTCCAT 58.529 47.619 0.00 0.00 0.00 3.41
2404 3375 1.937191 TCCAGCACAGTATCACTCCA 58.063 50.000 0.00 0.00 0.00 3.86
2406 3377 2.697751 AGGATCCAGCACAGTATCACTC 59.302 50.000 15.82 0.00 0.00 3.51
2407 3378 2.433604 CAGGATCCAGCACAGTATCACT 59.566 50.000 15.82 0.00 0.00 3.41
2410 3381 2.484417 CCACAGGATCCAGCACAGTATC 60.484 54.545 15.82 0.00 0.00 2.24
2411 3382 1.487976 CCACAGGATCCAGCACAGTAT 59.512 52.381 15.82 0.00 0.00 2.12
2413 3384 1.130054 ACCACAGGATCCAGCACAGT 61.130 55.000 15.82 0.20 0.00 3.55
2415 3386 1.126948 TCACCACAGGATCCAGCACA 61.127 55.000 15.82 0.00 0.00 4.57
2416 3387 0.674895 GTCACCACAGGATCCAGCAC 60.675 60.000 15.82 0.00 0.00 4.40
2417 3388 1.126948 TGTCACCACAGGATCCAGCA 61.127 55.000 15.82 0.00 0.00 4.41
2418 3389 0.254178 ATGTCACCACAGGATCCAGC 59.746 55.000 15.82 0.00 35.41 4.85
2420 3391 0.911769 GGATGTCACCACAGGATCCA 59.088 55.000 15.82 0.00 35.41 3.41
2424 3395 2.030027 AGAAGGATGTCACCACAGGA 57.970 50.000 0.00 0.00 35.41 3.86
2426 3397 3.692257 AGAAGAAGGATGTCACCACAG 57.308 47.619 0.00 0.00 35.41 3.66
2427 3398 3.136443 ACAAGAAGAAGGATGTCACCACA 59.864 43.478 0.00 0.00 36.78 4.17
2428 3399 3.744660 ACAAGAAGAAGGATGTCACCAC 58.255 45.455 0.00 0.00 0.00 4.16
2429 3400 5.491070 CATACAAGAAGAAGGATGTCACCA 58.509 41.667 0.00 0.00 0.00 4.17
2509 4078 0.662374 CGCAGCTTGCTGTTTTCTGG 60.662 55.000 21.55 0.00 42.25 3.86
2512 4081 0.248621 ACACGCAGCTTGCTGTTTTC 60.249 50.000 21.55 6.25 42.25 2.29
2556 4125 5.021458 ACGAAGGGAGGAGATGTAAAACTA 58.979 41.667 0.00 0.00 0.00 2.24
2563 4132 0.041238 TGGACGAAGGGAGGAGATGT 59.959 55.000 0.00 0.00 0.00 3.06
2627 4196 2.235845 ATGCTCGTCATCATCTGTGG 57.764 50.000 0.00 0.00 0.00 4.17
2687 4256 1.656587 ATACCTCAGAACCAGCACCA 58.343 50.000 0.00 0.00 0.00 4.17
2723 4292 4.753233 ACTCATCATCTTTTCCGACAGAG 58.247 43.478 0.00 0.00 0.00 3.35
2777 4346 1.372087 GCTCCAATGCTTGACTCCCG 61.372 60.000 0.00 0.00 0.00 5.14
3007 4582 6.743575 AGCACCACTATTGATGAAGTTAAC 57.256 37.500 0.00 0.00 0.00 2.01
3011 4586 5.423015 CACTAGCACCACTATTGATGAAGT 58.577 41.667 0.00 0.00 34.29 3.01
3154 4729 2.301583 GAGCTTCCACTTCTCTGAGGTT 59.698 50.000 4.59 0.00 0.00 3.50
3291 6082 2.820059 TATTCTGGCTAGGTGATGCG 57.180 50.000 0.00 0.00 0.00 4.73
3646 6450 0.773644 ATCCAGCTGGTCACACCTTT 59.226 50.000 31.58 4.63 39.58 3.11
3780 6590 4.865365 GGAGCTAAAGCAACACTAGTACTG 59.135 45.833 5.39 0.00 45.16 2.74
3871 6681 2.203538 CCTTGCACCTTGTGGGCT 60.204 61.111 0.00 0.00 39.10 5.19
4008 6818 3.094062 GCACGCCATAGGGAGCTGA 62.094 63.158 0.00 0.00 39.06 4.26
4040 6850 5.357257 CGCTTGGTTGGTATATTGTACTCT 58.643 41.667 0.00 0.00 0.00 3.24
4155 6965 1.305381 AAGCGTCTCCAGGCTAGGT 60.305 57.895 0.00 0.00 43.08 3.08
4590 7444 4.566987 AGTAAGTTGGCTAGCACACTAAC 58.433 43.478 18.24 12.42 0.00 2.34
4942 7931 5.464389 AGCAAAGCTGAGCAAATTAAACAAG 59.536 36.000 7.39 0.00 37.57 3.16
4949 7938 3.738830 TTGAGCAAAGCTGAGCAAATT 57.261 38.095 7.39 0.00 39.88 1.82
4950 7939 3.257375 TCATTGAGCAAAGCTGAGCAAAT 59.743 39.130 7.39 8.88 39.88 2.32
4968 7957 6.095440 ACTTTGACGCTTATATGGCTTTCATT 59.905 34.615 0.00 0.00 37.30 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.