Multiple sequence alignment - TraesCS2A01G043700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G043700 chr2A 100.000 2104 0 0 813 2916 17448100 17445997 0.000000e+00 3886.0
1 TraesCS2A01G043700 chr2A 92.557 833 50 6 2089 2916 17495823 17494998 0.000000e+00 1184.0
2 TraesCS2A01G043700 chr2A 88.740 968 72 21 813 1753 17500175 17499218 0.000000e+00 1149.0
3 TraesCS2A01G043700 chr2A 91.127 834 56 8 2089 2916 17487487 17486666 0.000000e+00 1114.0
4 TraesCS2A01G043700 chr2A 100.000 601 0 0 1 601 17448912 17448312 0.000000e+00 1110.0
5 TraesCS2A01G043700 chr2A 79.700 734 90 30 857 1551 17441732 17441019 2.630000e-130 475.0
6 TraesCS2A01G043700 chr2A 93.040 273 12 4 1 267 285027774 285027503 2.720000e-105 392.0
7 TraesCS2A01G043700 chr2A 88.012 342 22 10 1749 2090 17496187 17495865 1.270000e-103 387.0
8 TraesCS2A01G043700 chr2A 92.195 205 12 2 300 503 17491152 17490951 1.320000e-73 287.0
9 TraesCS2A01G043700 chr2A 91.758 182 15 0 1697 1878 17488915 17488734 1.340000e-63 254.0
10 TraesCS2A01G043700 chr2A 87.273 220 9 8 1871 2090 17487731 17487531 1.750000e-57 233.0
11 TraesCS2A01G043700 chr2A 99.065 107 1 0 160 266 16027929 16028035 2.970000e-45 193.0
12 TraesCS2A01G043700 chr2A 97.273 110 2 1 160 268 18058308 18058417 4.960000e-43 185.0
13 TraesCS2A01G043700 chr2D 87.935 862 48 16 820 1665 15453672 15452851 0.000000e+00 965.0
14 TraesCS2A01G043700 chr2D 93.133 466 29 1 2089 2554 15396290 15395828 0.000000e+00 680.0
15 TraesCS2A01G043700 chr2D 80.826 751 93 29 836 1551 15373455 15372721 2.560000e-150 542.0
16 TraesCS2A01G043700 chr2D 93.311 299 20 0 1655 1953 15397973 15397675 2.670000e-120 442.0
17 TraesCS2A01G043700 chr2D 96.269 134 5 0 2783 2916 15385767 15385634 1.360000e-53 220.0
18 TraesCS2A01G043700 chr2D 94.286 140 5 3 1951 2090 15396470 15396334 8.190000e-51 211.0
19 TraesCS2A01G043700 chr2D 90.000 90 7 2 505 594 15453996 15453909 6.600000e-22 115.0
20 TraesCS2A01G043700 chr2B 89.099 688 62 7 1275 1951 27537036 27536351 0.000000e+00 843.0
21 TraesCS2A01G043700 chr2B 87.221 673 77 7 2248 2916 27534452 27533785 0.000000e+00 758.0
22 TraesCS2A01G043700 chr2B 88.107 412 34 12 814 1217 27537622 27537218 2.630000e-130 475.0
23 TraesCS2A01G043700 chr2B 79.780 727 81 34 857 1551 27530447 27529755 4.400000e-128 468.0
24 TraesCS2A01G043700 chr2B 94.845 194 6 3 314 503 27538202 27538009 1.700000e-77 300.0
25 TraesCS2A01G043700 chr2B 93.814 97 6 0 503 599 27537853 27537757 2.340000e-31 147.0
26 TraesCS2A01G043700 chr2B 86.179 123 13 1 1968 2090 27535025 27534907 2.360000e-26 130.0
27 TraesCS2A01G043700 chr3A 93.358 271 13 2 1 266 44321014 44321284 2.110000e-106 396.0
28 TraesCS2A01G043700 chr7A 92.251 271 16 2 1 266 234634384 234634114 2.120000e-101 379.0
29 TraesCS2A01G043700 chr7A 90.698 43 3 1 419 460 651717359 651717401 4.060000e-04 56.5
30 TraesCS2A01G043700 chr5A 91.481 270 19 2 1 266 565411029 565410760 4.590000e-98 368.0
31 TraesCS2A01G043700 chr6B 98.182 110 1 1 162 271 3539889 3539781 1.070000e-44 191.0
32 TraesCS2A01G043700 chr6B 98.182 110 1 1 162 271 3549620 3549512 1.070000e-44 191.0
33 TraesCS2A01G043700 chr6B 93.750 128 6 2 159 284 459251554 459251427 1.070000e-44 191.0
34 TraesCS2A01G043700 chr5B 95.238 42 2 0 429 470 496995507 496995466 1.880000e-07 67.6
35 TraesCS2A01G043700 chr3D 100.000 32 0 0 1079 1110 449737562 449737593 3.140000e-05 60.2
36 TraesCS2A01G043700 chr5D 97.059 34 1 0 2164 2197 176108844 176108811 1.130000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G043700 chr2A 17445997 17448912 2915 True 2498.000000 3886 100.000000 1 2916 2 chr2A.!!$R3 2915
1 TraesCS2A01G043700 chr2A 17486666 17500175 13509 True 658.285714 1184 90.237429 300 2916 7 chr2A.!!$R4 2616
2 TraesCS2A01G043700 chr2A 17441019 17441732 713 True 475.000000 475 79.700000 857 1551 1 chr2A.!!$R1 694
3 TraesCS2A01G043700 chr2D 15372721 15373455 734 True 542.000000 542 80.826000 836 1551 1 chr2D.!!$R1 715
4 TraesCS2A01G043700 chr2D 15452851 15453996 1145 True 540.000000 965 88.967500 505 1665 2 chr2D.!!$R4 1160
5 TraesCS2A01G043700 chr2D 15395828 15397973 2145 True 444.333333 680 93.576667 1655 2554 3 chr2D.!!$R3 899
6 TraesCS2A01G043700 chr2B 27529755 27538202 8447 True 445.857143 843 88.435000 314 2916 7 chr2B.!!$R1 2602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 312 0.107606 TTCCATGCAATGCAATGGCC 60.108 50.0 22.89 0.0 44.92 5.36 F
1226 1429 1.106285 AGGTACGGCTAACTAACCCG 58.894 55.0 0.00 0.0 46.97 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1848 0.465097 GACGTAGATGGGAGGGTCGA 60.465 60.0 0.00 0.0 0.00 4.20 R
2866 16600 0.454600 GGTGACATCAGCAAGGCATG 59.545 55.0 6.21 0.0 43.34 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.237741 GAGCCAGGATCGGGGGAG 61.238 72.222 0.00 0.00 0.00 4.30
40 41 4.888325 AGCCAGGATCGGGGGAGG 62.888 72.222 0.00 0.00 0.00 4.30
41 42 4.880426 GCCAGGATCGGGGGAGGA 62.880 72.222 0.00 0.00 0.00 3.71
42 43 2.525381 CCAGGATCGGGGGAGGAG 60.525 72.222 0.00 0.00 0.00 3.69
43 44 2.609339 CAGGATCGGGGGAGGAGA 59.391 66.667 0.00 0.00 0.00 3.71
44 45 1.157276 CAGGATCGGGGGAGGAGAT 59.843 63.158 0.00 0.00 0.00 2.75
45 46 1.157276 AGGATCGGGGGAGGAGATG 59.843 63.158 0.00 0.00 0.00 2.90
46 47 1.915769 GGATCGGGGGAGGAGATGG 60.916 68.421 0.00 0.00 0.00 3.51
47 48 1.915769 GATCGGGGGAGGAGATGGG 60.916 68.421 0.00 0.00 0.00 4.00
48 49 3.490837 ATCGGGGGAGGAGATGGGG 62.491 68.421 0.00 0.00 0.00 4.96
101 102 4.918201 CTGGCGGCGAAGGGATCC 62.918 72.222 12.98 1.92 0.00 3.36
105 106 4.286320 CGGCGAAGGGATCCGGAG 62.286 72.222 11.34 0.00 39.52 4.63
136 137 2.426752 GCGCGTGCGTGTCAATTT 60.427 55.556 16.27 0.00 42.09 1.82
137 138 2.008697 GCGCGTGCGTGTCAATTTT 61.009 52.632 16.27 0.00 42.09 1.82
138 139 1.536462 GCGCGTGCGTGTCAATTTTT 61.536 50.000 16.27 0.00 42.09 1.94
157 158 4.437772 TTTTTCGTGGGTTTTTCTTCGT 57.562 36.364 0.00 0.00 0.00 3.85
158 159 5.557891 TTTTTCGTGGGTTTTTCTTCGTA 57.442 34.783 0.00 0.00 0.00 3.43
159 160 4.799419 TTTCGTGGGTTTTTCTTCGTAG 57.201 40.909 0.00 0.00 0.00 3.51
160 161 2.758009 TCGTGGGTTTTTCTTCGTAGG 58.242 47.619 0.00 0.00 0.00 3.18
161 162 2.102925 TCGTGGGTTTTTCTTCGTAGGT 59.897 45.455 0.00 0.00 0.00 3.08
162 163 2.222445 CGTGGGTTTTTCTTCGTAGGTG 59.778 50.000 0.00 0.00 0.00 4.00
163 164 2.551032 GTGGGTTTTTCTTCGTAGGTGG 59.449 50.000 0.00 0.00 0.00 4.61
164 165 2.156917 GGGTTTTTCTTCGTAGGTGGG 58.843 52.381 0.00 0.00 0.00 4.61
165 166 2.224597 GGGTTTTTCTTCGTAGGTGGGA 60.225 50.000 0.00 0.00 0.00 4.37
166 167 3.072211 GGTTTTTCTTCGTAGGTGGGAG 58.928 50.000 0.00 0.00 0.00 4.30
167 168 3.072211 GTTTTTCTTCGTAGGTGGGAGG 58.928 50.000 0.00 0.00 0.00 4.30
168 169 2.314071 TTTCTTCGTAGGTGGGAGGA 57.686 50.000 0.00 0.00 0.00 3.71
169 170 2.544844 TTCTTCGTAGGTGGGAGGAT 57.455 50.000 0.00 0.00 0.00 3.24
170 171 1.776662 TCTTCGTAGGTGGGAGGATG 58.223 55.000 0.00 0.00 0.00 3.51
171 172 1.286849 TCTTCGTAGGTGGGAGGATGA 59.713 52.381 0.00 0.00 0.00 2.92
172 173 1.409427 CTTCGTAGGTGGGAGGATGAC 59.591 57.143 0.00 0.00 0.00 3.06
173 174 0.750546 TCGTAGGTGGGAGGATGACG 60.751 60.000 0.00 0.00 0.00 4.35
174 175 0.750546 CGTAGGTGGGAGGATGACGA 60.751 60.000 0.00 0.00 0.00 4.20
175 176 1.481871 GTAGGTGGGAGGATGACGAA 58.518 55.000 0.00 0.00 0.00 3.85
176 177 1.829222 GTAGGTGGGAGGATGACGAAA 59.171 52.381 0.00 0.00 0.00 3.46
177 178 1.358152 AGGTGGGAGGATGACGAAAA 58.642 50.000 0.00 0.00 0.00 2.29
178 179 1.702957 AGGTGGGAGGATGACGAAAAA 59.297 47.619 0.00 0.00 0.00 1.94
200 201 3.221222 CGGAGGTGGGAGGATGAC 58.779 66.667 0.00 0.00 0.00 3.06
201 202 2.786495 CGGAGGTGGGAGGATGACG 61.786 68.421 0.00 0.00 0.00 4.35
202 203 1.381327 GGAGGTGGGAGGATGACGA 60.381 63.158 0.00 0.00 0.00 4.20
203 204 0.976073 GGAGGTGGGAGGATGACGAA 60.976 60.000 0.00 0.00 0.00 3.85
204 205 0.902531 GAGGTGGGAGGATGACGAAA 59.097 55.000 0.00 0.00 0.00 3.46
205 206 1.278127 GAGGTGGGAGGATGACGAAAA 59.722 52.381 0.00 0.00 0.00 2.29
206 207 1.916181 AGGTGGGAGGATGACGAAAAT 59.084 47.619 0.00 0.00 0.00 1.82
207 208 3.112263 AGGTGGGAGGATGACGAAAATA 58.888 45.455 0.00 0.00 0.00 1.40
208 209 3.521937 AGGTGGGAGGATGACGAAAATAA 59.478 43.478 0.00 0.00 0.00 1.40
209 210 4.018779 AGGTGGGAGGATGACGAAAATAAA 60.019 41.667 0.00 0.00 0.00 1.40
210 211 4.095932 GGTGGGAGGATGACGAAAATAAAC 59.904 45.833 0.00 0.00 0.00 2.01
211 212 4.095932 GTGGGAGGATGACGAAAATAAACC 59.904 45.833 0.00 0.00 0.00 3.27
212 213 4.263550 TGGGAGGATGACGAAAATAAACCA 60.264 41.667 0.00 0.00 0.00 3.67
213 214 4.335594 GGGAGGATGACGAAAATAAACCAG 59.664 45.833 0.00 0.00 0.00 4.00
214 215 4.201920 GGAGGATGACGAAAATAAACCAGC 60.202 45.833 0.00 0.00 0.00 4.85
215 216 3.374058 AGGATGACGAAAATAAACCAGCG 59.626 43.478 0.00 0.00 0.00 5.18
216 217 3.372822 GGATGACGAAAATAAACCAGCGA 59.627 43.478 0.00 0.00 0.00 4.93
217 218 4.142773 GGATGACGAAAATAAACCAGCGAA 60.143 41.667 0.00 0.00 0.00 4.70
218 219 4.815040 TGACGAAAATAAACCAGCGAAA 57.185 36.364 0.00 0.00 0.00 3.46
219 220 5.171147 TGACGAAAATAAACCAGCGAAAA 57.829 34.783 0.00 0.00 0.00 2.29
220 221 5.764131 TGACGAAAATAAACCAGCGAAAAT 58.236 33.333 0.00 0.00 0.00 1.82
221 222 6.900189 TGACGAAAATAAACCAGCGAAAATA 58.100 32.000 0.00 0.00 0.00 1.40
222 223 7.361127 TGACGAAAATAAACCAGCGAAAATAA 58.639 30.769 0.00 0.00 0.00 1.40
223 224 7.861372 TGACGAAAATAAACCAGCGAAAATAAA 59.139 29.630 0.00 0.00 0.00 1.40
224 225 7.999213 ACGAAAATAAACCAGCGAAAATAAAC 58.001 30.769 0.00 0.00 0.00 2.01
225 226 7.115236 ACGAAAATAAACCAGCGAAAATAAACC 59.885 33.333 0.00 0.00 0.00 3.27
226 227 6.937886 AAATAAACCAGCGAAAATAAACCG 57.062 33.333 0.00 0.00 0.00 4.44
230 231 3.272043 GCGAAAATAAACCGCGCG 58.728 55.556 25.67 25.67 39.54 6.86
231 232 2.212330 GCGAAAATAAACCGCGCGG 61.212 57.895 44.88 44.88 39.54 6.46
241 242 2.960129 CCGCGCGGACTATTCACC 60.960 66.667 44.86 0.00 37.50 4.02
242 243 2.202690 CGCGCGGACTATTCACCA 60.203 61.111 24.84 0.00 0.00 4.17
243 244 1.807981 CGCGCGGACTATTCACCAA 60.808 57.895 24.84 0.00 0.00 3.67
244 245 1.713830 GCGCGGACTATTCACCAAC 59.286 57.895 8.83 0.00 0.00 3.77
245 246 0.739813 GCGCGGACTATTCACCAACT 60.740 55.000 8.83 0.00 0.00 3.16
246 247 0.999406 CGCGGACTATTCACCAACTG 59.001 55.000 0.00 0.00 0.00 3.16
247 248 0.727398 GCGGACTATTCACCAACTGC 59.273 55.000 0.00 0.00 0.00 4.40
248 249 1.676014 GCGGACTATTCACCAACTGCT 60.676 52.381 0.00 0.00 0.00 4.24
249 250 2.271800 CGGACTATTCACCAACTGCTC 58.728 52.381 0.00 0.00 0.00 4.26
250 251 2.633488 GGACTATTCACCAACTGCTCC 58.367 52.381 0.00 0.00 0.00 4.70
251 252 2.027192 GGACTATTCACCAACTGCTCCA 60.027 50.000 0.00 0.00 0.00 3.86
252 253 3.370953 GGACTATTCACCAACTGCTCCAT 60.371 47.826 0.00 0.00 0.00 3.41
253 254 4.265073 GACTATTCACCAACTGCTCCATT 58.735 43.478 0.00 0.00 0.00 3.16
254 255 5.428253 GACTATTCACCAACTGCTCCATTA 58.572 41.667 0.00 0.00 0.00 1.90
255 256 5.431765 ACTATTCACCAACTGCTCCATTAG 58.568 41.667 0.00 0.00 0.00 1.73
256 257 2.787473 TCACCAACTGCTCCATTAGG 57.213 50.000 0.00 0.00 0.00 2.69
257 258 2.265367 TCACCAACTGCTCCATTAGGA 58.735 47.619 0.00 0.00 43.21 2.94
273 274 8.985755 TCCATTAGGAGTAGAGATACCTACTA 57.014 38.462 0.00 0.00 46.66 1.82
274 275 9.049050 TCCATTAGGAGTAGAGATACCTACTAG 57.951 40.741 0.00 0.00 46.66 2.57
275 276 8.828751 CCATTAGGAGTAGAGATACCTACTAGT 58.171 40.741 0.00 0.00 46.66 2.57
292 293 9.404077 ACCTACTAGTAGTATAGTATCTTGGGT 57.596 37.037 24.84 11.01 37.56 4.51
296 297 8.730948 ACTAGTAGTATAGTATCTTGGGTTCCA 58.269 37.037 0.00 0.00 34.21 3.53
297 298 9.756571 CTAGTAGTATAGTATCTTGGGTTCCAT 57.243 37.037 0.00 0.00 31.53 3.41
298 299 8.423906 AGTAGTATAGTATCTTGGGTTCCATG 57.576 38.462 0.00 0.00 31.53 3.66
299 300 6.115448 AGTATAGTATCTTGGGTTCCATGC 57.885 41.667 0.00 0.00 31.53 4.06
300 301 5.606749 AGTATAGTATCTTGGGTTCCATGCA 59.393 40.000 0.00 0.00 31.53 3.96
301 302 3.737559 AGTATCTTGGGTTCCATGCAA 57.262 42.857 0.00 0.00 31.53 4.08
302 303 4.255510 AGTATCTTGGGTTCCATGCAAT 57.744 40.909 0.00 0.00 31.53 3.56
303 304 3.956199 AGTATCTTGGGTTCCATGCAATG 59.044 43.478 0.00 0.00 46.21 2.82
304 305 0.896923 TCTTGGGTTCCATGCAATGC 59.103 50.000 0.00 0.00 44.97 3.56
305 306 0.609151 CTTGGGTTCCATGCAATGCA 59.391 50.000 11.44 11.44 44.97 3.96
306 307 1.002201 CTTGGGTTCCATGCAATGCAA 59.998 47.619 13.45 0.00 44.97 4.08
307 308 1.277579 TGGGTTCCATGCAATGCAAT 58.722 45.000 13.45 0.00 44.97 3.56
308 309 1.066071 TGGGTTCCATGCAATGCAATG 60.066 47.619 13.45 11.00 44.97 2.82
309 310 1.658994 GGTTCCATGCAATGCAATGG 58.341 50.000 22.16 22.16 44.97 3.16
310 311 1.011333 GTTCCATGCAATGCAATGGC 58.989 50.000 22.89 12.20 46.05 4.40
311 312 0.107606 TTCCATGCAATGCAATGGCC 60.108 50.000 22.89 0.00 44.92 5.36
312 313 1.222113 CCATGCAATGCAATGGCCA 59.778 52.632 13.45 8.56 44.92 5.36
394 395 2.939103 GCTGCTGGACCAGTACATTAAG 59.061 50.000 22.58 6.62 35.28 1.85
421 422 5.124617 ACAAACAAAATTCCCGTGCAAATTT 59.875 32.000 1.77 1.77 36.81 1.82
461 466 3.302434 CAGCGCTGCTTTCATTTGTATTG 59.698 43.478 26.68 0.00 36.40 1.90
497 502 6.655930 ACTTGTAGTTTTACTCACCCTCAAA 58.344 36.000 0.00 0.00 0.00 2.69
558 719 1.403249 GCAACTTGATGCACATGACCC 60.403 52.381 0.00 0.00 45.70 4.46
574 735 5.599656 ACATGACCCATCCAAATTAATCCAG 59.400 40.000 0.00 0.00 0.00 3.86
596 757 3.306710 GCAACGGGGGATCTTTCAAAATT 60.307 43.478 0.00 0.00 0.00 1.82
599 760 6.639563 CAACGGGGGATCTTTCAAAATTAAT 58.360 36.000 0.00 0.00 0.00 1.40
600 761 6.465439 ACGGGGGATCTTTCAAAATTAATC 57.535 37.500 0.00 0.00 0.00 1.75
937 1133 2.672381 CACTTAGAGAAAGCAGCTCAGC 59.328 50.000 0.00 0.00 38.93 4.26
993 1190 3.691342 ACTTCTGCGGCGCTGGTA 61.691 61.111 33.03 21.88 0.00 3.25
1225 1428 2.234661 ACAAGGTACGGCTAACTAACCC 59.765 50.000 0.00 0.00 0.00 4.11
1226 1429 1.106285 AGGTACGGCTAACTAACCCG 58.894 55.000 0.00 0.00 46.97 5.28
1231 1434 2.652941 CGGCTAACTAACCCGTACAA 57.347 50.000 0.00 0.00 37.36 2.41
1234 1437 4.681744 CGGCTAACTAACCCGTACAAATA 58.318 43.478 0.00 0.00 37.36 1.40
1235 1438 4.504097 CGGCTAACTAACCCGTACAAATAC 59.496 45.833 0.00 0.00 37.36 1.89
1236 1439 5.664457 GGCTAACTAACCCGTACAAATACT 58.336 41.667 0.00 0.00 0.00 2.12
1237 1440 6.459573 CGGCTAACTAACCCGTACAAATACTA 60.460 42.308 0.00 0.00 37.36 1.82
1238 1441 6.697455 GGCTAACTAACCCGTACAAATACTAC 59.303 42.308 0.00 0.00 0.00 2.73
1267 1601 9.790389 GACTAGCTATATTACATGATGTACACC 57.210 37.037 4.50 0.00 31.69 4.16
1268 1602 8.459635 ACTAGCTATATTACATGATGTACACCG 58.540 37.037 4.50 0.00 31.69 4.94
1489 1840 1.145598 CAGGCATGTCCAGCGATCT 59.854 57.895 8.58 0.00 37.29 2.75
1497 1848 3.222855 CCAGCGATCTCCGGAGCT 61.223 66.667 27.39 18.38 41.07 4.09
1533 1892 2.202756 CCTCACCTACTTCGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
1674 2045 3.214328 GCGATAATGTTTGGGGTGAGAT 58.786 45.455 0.00 0.00 0.00 2.75
1744 2115 4.717629 TCGTCAGACTTGCCGCCG 62.718 66.667 0.00 0.00 0.00 6.46
1804 5210 2.741211 GACGCCCGTTGTTCCTCC 60.741 66.667 0.00 0.00 0.00 4.30
1932 5338 7.303634 ACCAATAGCATGTTACTCTTTTACG 57.696 36.000 0.00 0.00 0.00 3.18
2003 7092 1.197430 CCTGTCAGGGAAGCCTCAGT 61.197 60.000 11.46 0.00 0.00 3.41
2011 7100 0.173708 GGAAGCCTCAGTCGACGAAT 59.826 55.000 10.46 0.00 0.00 3.34
2112 7246 1.751351 CTCGACCCAGTTATGCTCTCA 59.249 52.381 0.00 0.00 0.00 3.27
2193 7338 4.929808 CACATAACTCCACCTACAACTGTC 59.070 45.833 0.00 0.00 0.00 3.51
2207 7357 1.442857 CTGTCGTCTCGTGTGGAGC 60.443 63.158 0.00 0.00 42.82 4.70
2222 7372 3.842925 GAGCCCAGCAACCGGTGAA 62.843 63.158 8.52 0.00 43.56 3.18
2230 7380 0.951558 GCAACCGGTGAATCACTGTT 59.048 50.000 19.60 16.11 38.92 3.16
2251 7642 4.594123 TCTCGTGACATTCACCTACAAA 57.406 40.909 0.76 0.00 44.20 2.83
2281 7672 8.037758 AGTCTCTTCTTTATTCGTGACATTCAT 58.962 33.333 0.00 0.00 0.00 2.57
2282 7673 8.324567 GTCTCTTCTTTATTCGTGACATTCATC 58.675 37.037 0.00 0.00 0.00 2.92
2283 7674 8.034804 TCTCTTCTTTATTCGTGACATTCATCA 58.965 33.333 0.00 0.00 0.00 3.07
2329 7720 5.716094 TCTTTACAGCTCTTGTATTGCGTA 58.284 37.500 0.00 0.00 41.72 4.42
2419 7811 6.786967 ATTGTTGTATCGTACCCTAGTTCT 57.213 37.500 0.00 0.00 0.00 3.01
2438 7830 6.557568 AGTTCTCTCTTCCCGGATCTATATT 58.442 40.000 0.73 0.00 0.00 1.28
2453 7845 8.691727 CGGATCTATATTAAAGTGAACAACTCG 58.308 37.037 0.00 0.00 38.56 4.18
2503 16235 9.745880 GTTATTTGAAATCATCATCATTGCTCT 57.254 29.630 0.00 0.00 38.03 4.09
2534 16266 8.281212 ACTACTTGTCTCAACTTTGAACAAAT 57.719 30.769 14.79 10.71 37.54 2.32
2706 16439 5.186996 TGCTTTGGACATTTCAGACTTTC 57.813 39.130 0.00 0.00 0.00 2.62
2739 16472 3.009033 TCGGGTTCTTCATGGTCAATTCT 59.991 43.478 0.00 0.00 0.00 2.40
2819 16552 4.202398 TGAGAACATCCTCTCTGCACTTTT 60.202 41.667 2.57 0.00 42.11 2.27
2823 16556 5.489792 ACATCCTCTCTGCACTTTTTCTA 57.510 39.130 0.00 0.00 0.00 2.10
2866 16600 1.850640 CGTGTTCTGTGCGTACCAC 59.149 57.895 0.00 0.93 44.90 4.16
2876 16610 2.040544 GCGTACCACATGCCTTGCT 61.041 57.895 0.00 0.00 32.57 3.91
2890 16624 2.569059 CCTTGCTGATGTCACCTATGG 58.431 52.381 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.237741 CTCCCCCGATCCTGGCTC 61.238 72.222 0.00 0.00 0.00 4.70
23 24 4.888325 CCTCCCCCGATCCTGGCT 62.888 72.222 0.00 0.00 0.00 4.75
24 25 4.880426 TCCTCCCCCGATCCTGGC 62.880 72.222 0.00 0.00 0.00 4.85
25 26 2.393710 ATCTCCTCCCCCGATCCTGG 62.394 65.000 0.00 0.00 0.00 4.45
26 27 1.157276 ATCTCCTCCCCCGATCCTG 59.843 63.158 0.00 0.00 0.00 3.86
27 28 1.157276 CATCTCCTCCCCCGATCCT 59.843 63.158 0.00 0.00 0.00 3.24
28 29 1.915769 CCATCTCCTCCCCCGATCC 60.916 68.421 0.00 0.00 0.00 3.36
29 30 1.915769 CCCATCTCCTCCCCCGATC 60.916 68.421 0.00 0.00 0.00 3.69
30 31 2.205462 CCCATCTCCTCCCCCGAT 59.795 66.667 0.00 0.00 0.00 4.18
31 32 4.172232 CCCCATCTCCTCCCCCGA 62.172 72.222 0.00 0.00 0.00 5.14
84 85 4.918201 GGATCCCTTCGCCGCCAG 62.918 72.222 0.00 0.00 0.00 4.85
88 89 4.286320 CTCCGGATCCCTTCGCCG 62.286 72.222 3.57 0.00 44.42 6.46
89 90 3.930012 CCTCCGGATCCCTTCGCC 61.930 72.222 3.57 0.00 0.00 5.54
90 91 3.930012 CCCTCCGGATCCCTTCGC 61.930 72.222 3.57 0.00 0.00 4.70
91 92 3.930012 GCCCTCCGGATCCCTTCG 61.930 72.222 3.57 0.00 0.00 3.79
92 93 3.561241 GGCCCTCCGGATCCCTTC 61.561 72.222 3.57 0.00 0.00 3.46
119 120 1.536462 AAAAATTGACACGCACGCGC 61.536 50.000 12.02 0.00 44.19 6.86
120 121 2.490231 AAAAATTGACACGCACGCG 58.510 47.368 10.36 10.36 46.03 6.01
136 137 4.437772 ACGAAGAAAAACCCACGAAAAA 57.562 36.364 0.00 0.00 0.00 1.94
137 138 4.035441 CCTACGAAGAAAAACCCACGAAAA 59.965 41.667 0.00 0.00 0.00 2.29
138 139 3.560896 CCTACGAAGAAAAACCCACGAAA 59.439 43.478 0.00 0.00 0.00 3.46
139 140 3.132925 CCTACGAAGAAAAACCCACGAA 58.867 45.455 0.00 0.00 0.00 3.85
140 141 2.102925 ACCTACGAAGAAAAACCCACGA 59.897 45.455 0.00 0.00 0.00 4.35
141 142 2.222445 CACCTACGAAGAAAAACCCACG 59.778 50.000 0.00 0.00 0.00 4.94
142 143 2.551032 CCACCTACGAAGAAAAACCCAC 59.449 50.000 0.00 0.00 0.00 4.61
143 144 2.487625 CCCACCTACGAAGAAAAACCCA 60.488 50.000 0.00 0.00 0.00 4.51
144 145 2.156917 CCCACCTACGAAGAAAAACCC 58.843 52.381 0.00 0.00 0.00 4.11
145 146 3.072211 CTCCCACCTACGAAGAAAAACC 58.928 50.000 0.00 0.00 0.00 3.27
146 147 3.072211 CCTCCCACCTACGAAGAAAAAC 58.928 50.000 0.00 0.00 0.00 2.43
147 148 2.974099 TCCTCCCACCTACGAAGAAAAA 59.026 45.455 0.00 0.00 0.00 1.94
148 149 2.612000 TCCTCCCACCTACGAAGAAAA 58.388 47.619 0.00 0.00 0.00 2.29
149 150 2.314071 TCCTCCCACCTACGAAGAAA 57.686 50.000 0.00 0.00 0.00 2.52
150 151 2.108168 CATCCTCCCACCTACGAAGAA 58.892 52.381 0.00 0.00 0.00 2.52
151 152 1.286849 TCATCCTCCCACCTACGAAGA 59.713 52.381 0.00 0.00 0.00 2.87
152 153 1.409427 GTCATCCTCCCACCTACGAAG 59.591 57.143 0.00 0.00 0.00 3.79
153 154 1.481871 GTCATCCTCCCACCTACGAA 58.518 55.000 0.00 0.00 0.00 3.85
154 155 0.750546 CGTCATCCTCCCACCTACGA 60.751 60.000 0.00 0.00 0.00 3.43
155 156 0.750546 TCGTCATCCTCCCACCTACG 60.751 60.000 0.00 0.00 0.00 3.51
156 157 1.481871 TTCGTCATCCTCCCACCTAC 58.518 55.000 0.00 0.00 0.00 3.18
157 158 2.241281 TTTCGTCATCCTCCCACCTA 57.759 50.000 0.00 0.00 0.00 3.08
158 159 1.358152 TTTTCGTCATCCTCCCACCT 58.642 50.000 0.00 0.00 0.00 4.00
159 160 2.194201 TTTTTCGTCATCCTCCCACC 57.806 50.000 0.00 0.00 0.00 4.61
177 178 1.063654 TCCTCCCACCTCCGGTTTTT 61.064 55.000 0.00 0.00 31.02 1.94
178 179 0.845102 ATCCTCCCACCTCCGGTTTT 60.845 55.000 0.00 0.00 31.02 2.43
179 180 1.229853 ATCCTCCCACCTCCGGTTT 60.230 57.895 0.00 0.00 31.02 3.27
180 181 1.995626 CATCCTCCCACCTCCGGTT 60.996 63.158 0.00 0.00 31.02 4.44
181 182 2.365635 CATCCTCCCACCTCCGGT 60.366 66.667 0.00 0.00 35.62 5.28
182 183 2.041922 TCATCCTCCCACCTCCGG 60.042 66.667 0.00 0.00 0.00 5.14
183 184 2.786495 CGTCATCCTCCCACCTCCG 61.786 68.421 0.00 0.00 0.00 4.63
184 185 0.976073 TTCGTCATCCTCCCACCTCC 60.976 60.000 0.00 0.00 0.00 4.30
185 186 0.902531 TTTCGTCATCCTCCCACCTC 59.097 55.000 0.00 0.00 0.00 3.85
186 187 1.358152 TTTTCGTCATCCTCCCACCT 58.642 50.000 0.00 0.00 0.00 4.00
187 188 2.420058 ATTTTCGTCATCCTCCCACC 57.580 50.000 0.00 0.00 0.00 4.61
188 189 4.095932 GGTTTATTTTCGTCATCCTCCCAC 59.904 45.833 0.00 0.00 0.00 4.61
189 190 4.263550 TGGTTTATTTTCGTCATCCTCCCA 60.264 41.667 0.00 0.00 0.00 4.37
190 191 4.266714 TGGTTTATTTTCGTCATCCTCCC 58.733 43.478 0.00 0.00 0.00 4.30
191 192 4.201920 GCTGGTTTATTTTCGTCATCCTCC 60.202 45.833 0.00 0.00 0.00 4.30
192 193 4.494199 CGCTGGTTTATTTTCGTCATCCTC 60.494 45.833 0.00 0.00 0.00 3.71
193 194 3.374058 CGCTGGTTTATTTTCGTCATCCT 59.626 43.478 0.00 0.00 0.00 3.24
194 195 3.372822 TCGCTGGTTTATTTTCGTCATCC 59.627 43.478 0.00 0.00 0.00 3.51
195 196 4.593597 TCGCTGGTTTATTTTCGTCATC 57.406 40.909 0.00 0.00 0.00 2.92
196 197 5.365403 TTTCGCTGGTTTATTTTCGTCAT 57.635 34.783 0.00 0.00 0.00 3.06
197 198 4.815040 TTTCGCTGGTTTATTTTCGTCA 57.185 36.364 0.00 0.00 0.00 4.35
198 199 7.784790 TTATTTTCGCTGGTTTATTTTCGTC 57.215 32.000 0.00 0.00 0.00 4.20
199 200 7.115236 GGTTTATTTTCGCTGGTTTATTTTCGT 59.885 33.333 0.00 0.00 0.00 3.85
200 201 7.441864 GGTTTATTTTCGCTGGTTTATTTTCG 58.558 34.615 0.00 0.00 0.00 3.46
201 202 7.441864 CGGTTTATTTTCGCTGGTTTATTTTC 58.558 34.615 0.00 0.00 0.00 2.29
202 203 6.128769 GCGGTTTATTTTCGCTGGTTTATTTT 60.129 34.615 0.00 0.00 45.16 1.82
203 204 5.346551 GCGGTTTATTTTCGCTGGTTTATTT 59.653 36.000 0.00 0.00 45.16 1.40
204 205 4.860352 GCGGTTTATTTTCGCTGGTTTATT 59.140 37.500 0.00 0.00 45.16 1.40
205 206 4.417506 GCGGTTTATTTTCGCTGGTTTAT 58.582 39.130 0.00 0.00 45.16 1.40
206 207 3.667430 CGCGGTTTATTTTCGCTGGTTTA 60.667 43.478 0.00 0.00 46.23 2.01
207 208 2.668250 GCGGTTTATTTTCGCTGGTTT 58.332 42.857 0.00 0.00 45.16 3.27
208 209 1.400500 CGCGGTTTATTTTCGCTGGTT 60.400 47.619 0.00 0.00 46.23 3.67
209 210 0.167251 CGCGGTTTATTTTCGCTGGT 59.833 50.000 0.00 0.00 46.23 4.00
210 211 1.131618 GCGCGGTTTATTTTCGCTGG 61.132 55.000 8.83 0.00 46.23 4.85
211 212 1.452837 CGCGCGGTTTATTTTCGCTG 61.453 55.000 24.84 0.00 46.23 5.18
212 213 1.225908 CGCGCGGTTTATTTTCGCT 60.226 52.632 24.84 0.00 46.23 4.93
213 214 2.212330 CCGCGCGGTTTATTTTCGC 61.212 57.895 39.71 0.00 45.15 4.70
214 215 0.854445 GTCCGCGCGGTTTATTTTCG 60.854 55.000 44.16 18.40 36.47 3.46
215 216 0.445043 AGTCCGCGCGGTTTATTTTC 59.555 50.000 44.16 24.31 36.47 2.29
216 217 1.724429 TAGTCCGCGCGGTTTATTTT 58.276 45.000 44.16 24.87 36.47 1.82
217 218 1.944032 ATAGTCCGCGCGGTTTATTT 58.056 45.000 44.16 26.13 36.47 1.40
218 219 1.862827 GAATAGTCCGCGCGGTTTATT 59.137 47.619 44.16 39.53 36.47 1.40
219 220 1.202440 TGAATAGTCCGCGCGGTTTAT 60.202 47.619 44.16 35.30 36.47 1.40
220 221 0.173029 TGAATAGTCCGCGCGGTTTA 59.827 50.000 44.16 34.82 36.47 2.01
221 222 1.079681 TGAATAGTCCGCGCGGTTT 60.080 52.632 44.16 33.96 36.47 3.27
222 223 1.808390 GTGAATAGTCCGCGCGGTT 60.808 57.895 44.16 34.29 36.47 4.44
223 224 2.202703 GTGAATAGTCCGCGCGGT 60.203 61.111 44.16 30.82 36.47 5.68
224 225 2.960129 GGTGAATAGTCCGCGCGG 60.960 66.667 42.13 42.13 0.00 6.46
225 226 1.807981 TTGGTGAATAGTCCGCGCG 60.808 57.895 25.67 25.67 0.00 6.86
226 227 0.739813 AGTTGGTGAATAGTCCGCGC 60.740 55.000 0.00 0.00 0.00 6.86
227 228 0.999406 CAGTTGGTGAATAGTCCGCG 59.001 55.000 0.00 0.00 0.00 6.46
228 229 0.727398 GCAGTTGGTGAATAGTCCGC 59.273 55.000 0.00 0.00 0.00 5.54
229 230 2.271800 GAGCAGTTGGTGAATAGTCCG 58.728 52.381 0.00 0.00 0.00 4.79
230 231 2.027192 TGGAGCAGTTGGTGAATAGTCC 60.027 50.000 0.00 0.00 0.00 3.85
231 232 3.334583 TGGAGCAGTTGGTGAATAGTC 57.665 47.619 0.00 0.00 0.00 2.59
232 233 4.307032 AATGGAGCAGTTGGTGAATAGT 57.693 40.909 0.00 0.00 0.00 2.12
233 234 4.818546 CCTAATGGAGCAGTTGGTGAATAG 59.181 45.833 0.00 0.00 34.57 1.73
234 235 4.473196 TCCTAATGGAGCAGTTGGTGAATA 59.527 41.667 0.00 0.00 37.46 1.75
235 236 3.266772 TCCTAATGGAGCAGTTGGTGAAT 59.733 43.478 0.00 0.00 37.46 2.57
236 237 2.642311 TCCTAATGGAGCAGTTGGTGAA 59.358 45.455 0.00 0.00 37.46 3.18
237 238 2.265367 TCCTAATGGAGCAGTTGGTGA 58.735 47.619 0.00 0.00 37.46 4.02
238 239 2.787473 TCCTAATGGAGCAGTTGGTG 57.213 50.000 0.00 0.00 37.46 4.17
248 249 7.891825 AGTAGGTATCTCTACTCCTAATGGA 57.108 40.000 0.00 0.00 44.62 3.41
249 250 8.828751 ACTAGTAGGTATCTCTACTCCTAATGG 58.171 40.741 7.68 0.00 44.62 3.16
266 267 9.404077 ACCCAAGATACTATACTACTAGTAGGT 57.596 37.037 29.05 20.21 37.56 3.08
270 271 8.730948 TGGAACCCAAGATACTATACTACTAGT 58.269 37.037 0.00 0.00 36.04 2.57
271 272 9.756571 ATGGAACCCAAGATACTATACTACTAG 57.243 37.037 0.00 0.00 36.95 2.57
272 273 9.529823 CATGGAACCCAAGATACTATACTACTA 57.470 37.037 0.00 0.00 36.95 1.82
273 274 7.038941 GCATGGAACCCAAGATACTATACTACT 60.039 40.741 0.00 0.00 36.95 2.57
274 275 7.097834 GCATGGAACCCAAGATACTATACTAC 58.902 42.308 0.00 0.00 36.95 2.73
275 276 6.785466 TGCATGGAACCCAAGATACTATACTA 59.215 38.462 0.00 0.00 36.95 1.82
276 277 5.606749 TGCATGGAACCCAAGATACTATACT 59.393 40.000 0.00 0.00 36.95 2.12
277 278 5.865085 TGCATGGAACCCAAGATACTATAC 58.135 41.667 0.00 0.00 36.95 1.47
278 279 6.508030 TTGCATGGAACCCAAGATACTATA 57.492 37.500 0.00 0.00 36.95 1.31
279 280 5.387113 TTGCATGGAACCCAAGATACTAT 57.613 39.130 0.00 0.00 36.95 2.12
280 281 4.853468 TTGCATGGAACCCAAGATACTA 57.147 40.909 0.00 0.00 36.95 1.82
281 282 3.737559 TTGCATGGAACCCAAGATACT 57.262 42.857 0.00 0.00 36.95 2.12
282 283 3.491447 GCATTGCATGGAACCCAAGATAC 60.491 47.826 0.12 0.00 36.95 2.24
283 284 2.694628 GCATTGCATGGAACCCAAGATA 59.305 45.455 0.12 0.00 36.95 1.98
284 285 1.483415 GCATTGCATGGAACCCAAGAT 59.517 47.619 0.12 0.00 36.95 2.40
285 286 0.896923 GCATTGCATGGAACCCAAGA 59.103 50.000 0.12 0.00 36.95 3.02
286 287 0.609151 TGCATTGCATGGAACCCAAG 59.391 50.000 7.38 0.00 36.95 3.61
287 288 1.054231 TTGCATTGCATGGAACCCAA 58.946 45.000 12.95 5.93 38.76 4.12
288 289 1.066071 CATTGCATTGCATGGAACCCA 60.066 47.619 12.95 0.00 43.41 4.51
289 290 1.658994 CATTGCATTGCATGGAACCC 58.341 50.000 12.95 0.00 43.41 4.11
290 291 1.658994 CCATTGCATTGCATGGAACC 58.341 50.000 24.19 0.00 43.41 3.62
291 292 1.011333 GCCATTGCATTGCATGGAAC 58.989 50.000 28.88 16.57 43.41 3.62
292 293 0.107606 GGCCATTGCATTGCATGGAA 60.108 50.000 28.88 11.39 44.71 3.53
293 294 1.265454 TGGCCATTGCATTGCATGGA 61.265 50.000 28.88 12.50 38.51 3.41
294 295 0.813610 CTGGCCATTGCATTGCATGG 60.814 55.000 24.17 24.17 38.76 3.66
295 296 1.436195 GCTGGCCATTGCATTGCATG 61.436 55.000 12.95 12.16 38.76 4.06
296 297 1.153249 GCTGGCCATTGCATTGCAT 60.153 52.632 12.95 0.00 38.76 3.96
297 298 1.904990 ATGCTGGCCATTGCATTGCA 61.905 50.000 23.13 19.24 46.29 4.08
298 299 1.153249 ATGCTGGCCATTGCATTGC 60.153 52.632 23.13 14.34 46.29 3.56
302 303 1.665264 CCGTAATGCTGGCCATTGCA 61.665 55.000 20.74 20.74 43.98 4.08
303 304 1.066257 CCGTAATGCTGGCCATTGC 59.934 57.895 5.51 8.24 43.77 3.56
304 305 0.664761 CTCCGTAATGCTGGCCATTG 59.335 55.000 5.51 0.00 43.77 2.82
305 306 0.255890 ACTCCGTAATGCTGGCCATT 59.744 50.000 5.51 0.00 45.75 3.16
306 307 1.128200 TACTCCGTAATGCTGGCCAT 58.872 50.000 5.51 0.00 35.06 4.40
307 308 0.177141 GTACTCCGTAATGCTGGCCA 59.823 55.000 4.71 4.71 0.00 5.36
308 309 0.177141 TGTACTCCGTAATGCTGGCC 59.823 55.000 0.00 0.00 0.00 5.36
309 310 1.867233 CATGTACTCCGTAATGCTGGC 59.133 52.381 0.00 0.00 0.00 4.85
310 311 2.102420 TCCATGTACTCCGTAATGCTGG 59.898 50.000 0.00 0.00 0.00 4.85
311 312 3.181475 ACTCCATGTACTCCGTAATGCTG 60.181 47.826 0.00 0.00 0.00 4.41
312 313 3.031736 ACTCCATGTACTCCGTAATGCT 58.968 45.455 0.00 0.00 0.00 3.79
394 395 4.113354 TGCACGGGAATTTTGTTTGTTAC 58.887 39.130 0.00 0.00 0.00 2.50
427 432 2.507102 GCGCTGCTGCTCTTCGTA 60.507 61.111 14.03 0.00 36.97 3.43
443 448 5.064441 ACCTCAATACAAATGAAAGCAGC 57.936 39.130 0.00 0.00 0.00 5.25
461 466 4.538746 AACTACAAGTTGCTCCTACCTC 57.461 45.455 1.81 0.00 37.00 3.85
497 502 9.574516 AGCGGAATTATATAGTCCTTGAAAAAT 57.425 29.630 11.02 0.00 0.00 1.82
551 712 5.510179 GCTGGATTAATTTGGATGGGTCATG 60.510 44.000 0.00 0.00 0.00 3.07
558 719 4.362279 CCGTTGCTGGATTAATTTGGATG 58.638 43.478 0.00 0.00 0.00 3.51
574 735 1.253100 TTTGAAAGATCCCCCGTTGC 58.747 50.000 0.00 0.00 0.00 4.17
812 973 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
874 1060 2.070650 GGGGTGGATCTAAGCCGGT 61.071 63.158 1.90 0.00 35.99 5.28
993 1190 1.005275 CTGCGCCATCATCTCGGAT 60.005 57.895 4.18 0.00 0.00 4.18
1183 1383 1.729586 TTGGGCCTTGTCTGAGTAGT 58.270 50.000 4.53 0.00 0.00 2.73
1184 1384 2.814336 GTTTTGGGCCTTGTCTGAGTAG 59.186 50.000 4.53 0.00 0.00 2.57
1185 1385 2.173782 TGTTTTGGGCCTTGTCTGAGTA 59.826 45.455 4.53 0.00 0.00 2.59
1267 1601 3.711842 TTTGGCTCGTTGCTCGCG 61.712 61.111 0.00 0.00 42.39 5.87
1268 1602 2.127232 GTTTGGCTCGTTGCTCGC 60.127 61.111 3.58 0.00 42.39 5.03
1409 1760 1.827399 AAGTAGTGCCTCGGGTGGTG 61.827 60.000 0.00 0.00 0.00 4.17
1471 1822 0.879400 GAGATCGCTGGACATGCCTG 60.879 60.000 7.54 7.86 37.63 4.85
1489 1840 4.816984 GGAGGGTCGAGCTCCGGA 62.817 72.222 15.18 2.93 39.14 5.14
1497 1848 0.465097 GACGTAGATGGGAGGGTCGA 60.465 60.000 0.00 0.00 0.00 4.20
1798 5204 3.011517 GCAGCAGGGGAGGAGGAA 61.012 66.667 0.00 0.00 0.00 3.36
1831 5237 0.529992 CGAAGTAATCCCAGTCGGCC 60.530 60.000 0.00 0.00 0.00 6.13
1837 5243 3.007635 GTTGTTCCCGAAGTAATCCCAG 58.992 50.000 0.00 0.00 0.00 4.45
1843 5249 2.605338 CGACGAGTTGTTCCCGAAGTAA 60.605 50.000 0.00 0.00 0.00 2.24
1932 5338 5.473796 TTTAACGACACAAGGAACTGTTC 57.526 39.130 12.05 12.05 40.86 3.18
1981 7070 1.276622 GAGGCTTCCCTGACAGGTTA 58.723 55.000 20.24 5.23 43.12 2.85
2003 7092 3.945921 AGTGTTCATCCTAGATTCGTCGA 59.054 43.478 0.00 0.00 0.00 4.20
2011 7100 6.433847 TTTTCTCCAAGTGTTCATCCTAGA 57.566 37.500 0.00 0.00 0.00 2.43
2153 7298 4.553330 ATGTGAAGTCAACCGGATTAGT 57.447 40.909 9.46 0.00 0.00 2.24
2207 7357 1.303236 TGATTCACCGGTTGCTGGG 60.303 57.895 2.97 0.00 33.40 4.45
2251 7642 7.827701 TGTCACGAATAAAGAAGAGACTACAT 58.172 34.615 0.00 0.00 0.00 2.29
2304 7695 5.643777 ACGCAATACAAGAGCTGTAAAGAAT 59.356 36.000 0.00 0.00 43.75 2.40
2311 7702 2.618053 GGTACGCAATACAAGAGCTGT 58.382 47.619 0.00 0.00 42.47 4.40
2382 7773 9.256477 ACGATACAACAATATTGTCGAATATGT 57.744 29.630 24.77 22.21 41.31 2.29
2410 7802 1.063867 TCCGGGAAGAGAGAACTAGGG 60.064 57.143 0.00 0.00 0.00 3.53
2419 7811 7.948447 TCACTTTAATATAGATCCGGGAAGAGA 59.052 37.037 0.00 0.00 0.00 3.10
2438 7830 9.529325 CATCTAATATCCGAGTTGTTCACTTTA 57.471 33.333 0.00 0.00 35.01 1.85
2534 16266 2.302260 TGACCAAAGGCAATGTCGAAA 58.698 42.857 0.00 0.00 0.00 3.46
2596 16328 7.092444 TGCTATAGCTATGGGGCAAGTATAAAT 60.092 37.037 24.61 0.00 42.66 1.40
2706 16439 3.447586 TGAAGAACCCGAGAGAGTATTGG 59.552 47.826 0.00 0.00 0.00 3.16
2747 16480 4.142609 TCTATTGAGCTTCACCCATCAC 57.857 45.455 0.00 0.00 0.00 3.06
2819 16552 0.834612 CCGGGCATAGGTGGTTAGAA 59.165 55.000 0.00 0.00 0.00 2.10
2823 16556 1.795951 AAACCCGGGCATAGGTGGTT 61.796 55.000 24.08 0.00 40.91 3.67
2866 16600 0.454600 GGTGACATCAGCAAGGCATG 59.545 55.000 6.21 0.00 43.34 4.06
2876 16610 1.695114 CCGGGCCATAGGTGACATCA 61.695 60.000 4.39 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.