Multiple sequence alignment - TraesCS2A01G043600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G043600 chr2A 100.000 3109 0 0 1 3109 17442707 17439599 0.000000e+00 5742.0
1 TraesCS2A01G043600 chr2A 93.700 1381 61 12 1014 2376 17482272 17480900 0.000000e+00 2045.0
2 TraesCS2A01G043600 chr2A 79.673 733 92 29 976 1689 17448056 17447362 2.810000e-130 475.0
3 TraesCS2A01G043600 chr2A 88.204 373 22 9 558 912 17482738 17482370 2.870000e-115 425.0
4 TraesCS2A01G043600 chr2A 85.532 235 10 6 1 214 17482965 17482734 1.120000e-54 224.0
5 TraesCS2A01G043600 chr2A 78.968 252 42 6 2412 2656 768650133 768650380 8.920000e-36 161.0
6 TraesCS2A01G043600 chr2A 98.413 63 1 0 2305 2367 17480841 17480903 9.110000e-21 111.0
7 TraesCS2A01G043600 chr2A 95.349 43 1 1 902 944 17482336 17482295 2.000000e-07 67.6
8 TraesCS2A01G043600 chr2A 90.000 50 5 0 147 196 17491925 17491876 7.200000e-07 65.8
9 TraesCS2A01G043600 chr2B 89.514 2241 114 59 905 3109 27530518 27528363 0.000000e+00 2724.0
10 TraesCS2A01G043600 chr2B 98.271 347 6 0 215 561 800099457 800099111 2.650000e-170 608.0
11 TraesCS2A01G043600 chr2B 96.629 356 12 0 210 565 796798803 796798448 2.670000e-165 592.0
12 TraesCS2A01G043600 chr2B 88.519 270 11 10 647 912 27530807 27530554 3.010000e-80 309.0
13 TraesCS2A01G043600 chr2B 88.584 219 25 0 1468 1686 27536981 27536763 1.840000e-67 267.0
14 TraesCS2A01G043600 chr2D 91.371 1692 90 26 558 2210 15373873 15372199 0.000000e+00 2265.0
15 TraesCS2A01G043600 chr2D 84.170 518 45 6 2195 2707 15371028 15370543 4.690000e-128 468.0
16 TraesCS2A01G043600 chr2D 89.316 234 18 2 2874 3107 15368087 15367861 1.410000e-73 287.0
17 TraesCS2A01G043600 chr2D 92.473 186 13 1 2702 2887 15369388 15369204 6.610000e-67 265.0
18 TraesCS2A01G043600 chr2D 85.841 226 17 4 1 214 15374091 15373869 3.120000e-55 226.0
19 TraesCS2A01G043600 chr4A 98.266 346 6 0 214 559 690223525 690223180 9.540000e-170 606.0
20 TraesCS2A01G043600 chr1B 96.944 360 10 1 212 570 310754417 310754776 1.230000e-168 603.0
21 TraesCS2A01G043600 chr1B 93.333 60 4 0 586 645 26093306 26093247 4.270000e-14 89.8
22 TraesCS2A01G043600 chr1B 91.667 60 5 0 586 645 368075963 368075904 1.990000e-12 84.2
23 TraesCS2A01G043600 chr5A 97.977 346 7 0 214 559 45711516 45711861 4.440000e-168 601.0
24 TraesCS2A01G043600 chr6B 96.667 360 11 1 212 570 134735583 134735942 5.740000e-167 597.0
25 TraesCS2A01G043600 chr6B 96.133 362 12 2 211 570 245700434 245700073 9.600000e-165 590.0
26 TraesCS2A01G043600 chr6B 79.283 251 41 6 2411 2654 647435702 647435456 6.900000e-37 165.0
27 TraesCS2A01G043600 chr7A 97.151 351 10 0 214 564 707812695 707812345 7.420000e-166 593.0
28 TraesCS2A01G043600 chr7A 97.151 351 10 0 214 564 710491050 710491400 7.420000e-166 593.0
29 TraesCS2A01G043600 chr7A 80.478 251 40 6 2411 2656 625679125 625678879 1.900000e-42 183.0
30 TraesCS2A01G043600 chr7B 81.172 239 32 9 2410 2644 446659932 446659703 2.460000e-41 180.0
31 TraesCS2A01G043600 chr7B 93.443 61 4 0 586 646 329087694 329087754 1.190000e-14 91.6
32 TraesCS2A01G043600 chr7B 90.625 64 5 1 586 649 642277750 642277688 1.990000e-12 84.2
33 TraesCS2A01G043600 chr7B 88.060 67 8 0 579 645 97375108 97375174 2.570000e-11 80.5
34 TraesCS2A01G043600 chr5D 82.843 204 30 2 2453 2655 37862313 37862114 8.860000e-41 178.0
35 TraesCS2A01G043600 chrUn 77.689 251 45 7 2410 2656 95228803 95228560 3.230000e-30 143.0
36 TraesCS2A01G043600 chr3A 91.045 67 6 0 579 645 457497289 457497355 1.190000e-14 91.6
37 TraesCS2A01G043600 chr5B 89.855 69 5 2 579 645 262049817 262049885 1.540000e-13 87.9
38 TraesCS2A01G043600 chr4D 91.667 60 5 0 586 645 341399264 341399205 1.990000e-12 84.2
39 TraesCS2A01G043600 chr3B 79.646 113 18 3 2471 2583 602492423 602492530 3.320000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G043600 chr2A 17439599 17442707 3108 True 5742.0 5742 100.00000 1 3109 1 chr2A.!!$R1 3108
1 TraesCS2A01G043600 chr2A 17480900 17482965 2065 True 690.4 2045 90.69625 1 2376 4 chr2A.!!$R4 2375
2 TraesCS2A01G043600 chr2A 17447362 17448056 694 True 475.0 475 79.67300 976 1689 1 chr2A.!!$R2 713
3 TraesCS2A01G043600 chr2B 27528363 27530807 2444 True 1516.5 2724 89.01650 647 3109 2 chr2B.!!$R4 2462
4 TraesCS2A01G043600 chr2D 15367861 15374091 6230 True 702.2 2265 88.63420 1 3107 5 chr2D.!!$R1 3106

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 517 0.178990 GTCAGGGGTGCTTGGAACTT 60.179 55.0 0.0 0.0 0.0 2.66 F
1009 1145 0.107214 CCCGCCAGCTTAGATCCAAA 60.107 55.0 0.0 0.0 0.0 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 1999 0.380378 GCGTTGACTCAACTTTGGCA 59.620 50.0 17.81 0.0 41.62 4.92 R
2505 3880 0.179032 TCTGGGCAACATGTTCACGT 60.179 50.0 8.48 0.0 39.74 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 38 4.292571 TGGATTATGGGTGGACTTAACCAA 59.707 41.667 0.00 0.00 41.87 3.67
64 72 2.669569 ACGGCACACATGAGGCAC 60.670 61.111 0.00 0.00 0.00 5.01
97 105 1.826921 GCCACCTGCTGATGGATGG 60.827 63.158 8.46 5.75 38.34 3.51
135 143 6.600822 GCCTGCCACATAATGACATATAGATT 59.399 38.462 0.00 0.00 0.00 2.40
187 208 4.079253 TCCCCTGCAATTTGTAGTTCTTC 58.921 43.478 12.61 0.00 0.00 2.87
209 231 4.649674 TCATTGCTATCTACTCCCTCGTTT 59.350 41.667 0.00 0.00 0.00 3.60
210 232 4.650754 TTGCTATCTACTCCCTCGTTTC 57.349 45.455 0.00 0.00 0.00 2.78
211 233 3.899726 TGCTATCTACTCCCTCGTTTCT 58.100 45.455 0.00 0.00 0.00 2.52
212 234 5.045012 TGCTATCTACTCCCTCGTTTCTA 57.955 43.478 0.00 0.00 0.00 2.10
213 235 5.443283 TGCTATCTACTCCCTCGTTTCTAA 58.557 41.667 0.00 0.00 0.00 2.10
214 236 5.531659 TGCTATCTACTCCCTCGTTTCTAAG 59.468 44.000 0.00 0.00 0.00 2.18
215 237 5.764192 GCTATCTACTCCCTCGTTTCTAAGA 59.236 44.000 0.00 0.00 0.00 2.10
216 238 6.072893 GCTATCTACTCCCTCGTTTCTAAGAG 60.073 46.154 0.00 0.00 0.00 2.85
223 245 3.320673 CTCGTTTCTAAGAGGGTGCTT 57.679 47.619 0.00 0.00 0.00 3.91
224 246 2.996621 CTCGTTTCTAAGAGGGTGCTTG 59.003 50.000 0.00 0.00 0.00 4.01
225 247 2.076863 CGTTTCTAAGAGGGTGCTTGG 58.923 52.381 0.00 0.00 0.00 3.61
226 248 2.289444 CGTTTCTAAGAGGGTGCTTGGA 60.289 50.000 0.00 0.00 34.18 3.53
227 249 3.619979 CGTTTCTAAGAGGGTGCTTGGAT 60.620 47.826 0.00 0.00 35.67 3.41
228 250 4.382685 CGTTTCTAAGAGGGTGCTTGGATA 60.383 45.833 0.00 0.00 35.67 2.59
229 251 4.755266 TTCTAAGAGGGTGCTTGGATAC 57.245 45.455 0.00 0.00 35.67 2.24
230 252 2.693591 TCTAAGAGGGTGCTTGGATACG 59.306 50.000 0.00 0.00 42.51 3.06
231 253 1.276622 AAGAGGGTGCTTGGATACGT 58.723 50.000 0.00 0.00 42.51 3.57
232 254 1.276622 AGAGGGTGCTTGGATACGTT 58.723 50.000 0.00 0.00 42.51 3.99
233 255 1.628846 AGAGGGTGCTTGGATACGTTT 59.371 47.619 0.00 0.00 42.51 3.60
234 256 2.039879 AGAGGGTGCTTGGATACGTTTT 59.960 45.455 0.00 0.00 42.51 2.43
235 257 3.262405 AGAGGGTGCTTGGATACGTTTTA 59.738 43.478 0.00 0.00 42.51 1.52
236 258 3.606687 AGGGTGCTTGGATACGTTTTAG 58.393 45.455 0.00 0.00 42.51 1.85
237 259 3.008704 AGGGTGCTTGGATACGTTTTAGT 59.991 43.478 0.00 0.00 42.51 2.24
238 260 3.373130 GGGTGCTTGGATACGTTTTAGTC 59.627 47.826 0.00 0.00 42.51 2.59
239 261 3.373130 GGTGCTTGGATACGTTTTAGTCC 59.627 47.826 0.00 0.00 42.51 3.85
240 262 3.373130 GTGCTTGGATACGTTTTAGTCCC 59.627 47.826 0.00 0.00 42.51 4.46
241 263 3.008157 TGCTTGGATACGTTTTAGTCCCA 59.992 43.478 0.00 0.00 42.51 4.37
242 264 4.196971 GCTTGGATACGTTTTAGTCCCAT 58.803 43.478 0.00 0.00 42.51 4.00
243 265 4.035208 GCTTGGATACGTTTTAGTCCCATG 59.965 45.833 0.00 0.00 42.51 3.66
244 266 5.423704 TTGGATACGTTTTAGTCCCATGA 57.576 39.130 0.00 0.00 42.51 3.07
245 267 4.761975 TGGATACGTTTTAGTCCCATGAC 58.238 43.478 0.00 0.00 40.25 3.06
247 269 5.657745 TGGATACGTTTTAGTCCCATGACTA 59.342 40.000 0.00 0.00 45.97 2.59
258 280 4.514401 GTCCCATGACTAAAAGTAGTGGG 58.486 47.826 17.22 17.22 46.41 4.61
261 283 5.422214 CCATGACTAAAAGTAGTGGGACT 57.578 43.478 0.00 0.00 40.82 3.85
262 284 6.540438 CCATGACTAAAAGTAGTGGGACTA 57.460 41.667 0.00 0.00 40.82 2.59
263 285 6.942976 CCATGACTAAAAGTAGTGGGACTAA 58.057 40.000 0.00 0.00 40.82 2.24
264 286 7.391620 CCATGACTAAAAGTAGTGGGACTAAA 58.608 38.462 0.00 0.00 40.82 1.85
265 287 7.881232 CCATGACTAAAAGTAGTGGGACTAAAA 59.119 37.037 0.00 0.00 40.82 1.52
266 288 8.718734 CATGACTAAAAGTAGTGGGACTAAAAC 58.281 37.037 0.00 0.00 40.82 2.43
267 289 8.026396 TGACTAAAAGTAGTGGGACTAAAACT 57.974 34.615 0.00 0.00 40.82 2.66
268 290 8.488668 TGACTAAAAGTAGTGGGACTAAAACTT 58.511 33.333 0.00 0.00 40.82 2.66
269 291 8.672823 ACTAAAAGTAGTGGGACTAAAACTTG 57.327 34.615 0.00 0.00 39.20 3.16
270 292 6.387041 AAAAGTAGTGGGACTAAAACTTGC 57.613 37.500 0.00 0.00 31.62 4.01
271 293 4.976540 AGTAGTGGGACTAAAACTTGCT 57.023 40.909 0.00 0.00 31.62 3.91
272 294 6.429521 AAGTAGTGGGACTAAAACTTGCTA 57.570 37.500 0.00 0.00 31.62 3.49
273 295 6.038997 AGTAGTGGGACTAAAACTTGCTAG 57.961 41.667 0.00 0.00 31.62 3.42
274 296 3.676093 AGTGGGACTAAAACTTGCTAGC 58.324 45.455 8.10 8.10 0.00 3.42
275 297 2.747989 GTGGGACTAAAACTTGCTAGCC 59.252 50.000 13.29 0.00 0.00 3.93
276 298 2.642807 TGGGACTAAAACTTGCTAGCCT 59.357 45.455 13.29 0.00 0.00 4.58
277 299 3.271729 GGGACTAAAACTTGCTAGCCTC 58.728 50.000 13.29 0.00 0.00 4.70
278 300 3.307480 GGGACTAAAACTTGCTAGCCTCA 60.307 47.826 13.29 0.00 0.00 3.86
279 301 3.685272 GGACTAAAACTTGCTAGCCTCAC 59.315 47.826 13.29 0.00 0.00 3.51
280 302 3.676093 ACTAAAACTTGCTAGCCTCACC 58.324 45.455 13.29 0.00 0.00 4.02
281 303 1.911057 AAAACTTGCTAGCCTCACCC 58.089 50.000 13.29 0.00 0.00 4.61
282 304 0.771127 AAACTTGCTAGCCTCACCCA 59.229 50.000 13.29 0.00 0.00 4.51
283 305 0.995024 AACTTGCTAGCCTCACCCAT 59.005 50.000 13.29 0.00 0.00 4.00
284 306 0.254178 ACTTGCTAGCCTCACCCATG 59.746 55.000 13.29 0.00 0.00 3.66
285 307 1.077501 TTGCTAGCCTCACCCATGC 60.078 57.895 13.29 0.00 0.00 4.06
286 308 1.565390 TTGCTAGCCTCACCCATGCT 61.565 55.000 13.29 0.00 39.10 3.79
287 309 1.225704 GCTAGCCTCACCCATGCTT 59.774 57.895 2.29 0.00 36.57 3.91
288 310 1.099879 GCTAGCCTCACCCATGCTTG 61.100 60.000 2.29 0.00 36.57 4.01
289 311 0.465097 CTAGCCTCACCCATGCTTGG 60.465 60.000 11.68 11.68 43.23 3.61
290 312 0.913934 TAGCCTCACCCATGCTTGGA 60.914 55.000 19.85 0.00 46.92 3.53
291 313 1.076485 GCCTCACCCATGCTTGGAT 60.076 57.895 19.85 0.00 46.92 3.41
292 314 0.685458 GCCTCACCCATGCTTGGATT 60.685 55.000 19.85 3.68 46.92 3.01
293 315 1.396653 CCTCACCCATGCTTGGATTC 58.603 55.000 19.85 0.00 46.92 2.52
294 316 1.341285 CCTCACCCATGCTTGGATTCA 60.341 52.381 19.85 0.49 46.92 2.57
295 317 2.449464 CTCACCCATGCTTGGATTCAA 58.551 47.619 19.85 0.00 46.92 2.69
296 318 2.827322 CTCACCCATGCTTGGATTCAAA 59.173 45.455 19.85 0.00 46.92 2.69
297 319 3.443052 TCACCCATGCTTGGATTCAAAT 58.557 40.909 19.85 0.00 46.92 2.32
298 320 4.608269 TCACCCATGCTTGGATTCAAATA 58.392 39.130 19.85 0.00 46.92 1.40
299 321 4.402155 TCACCCATGCTTGGATTCAAATAC 59.598 41.667 19.85 0.00 46.92 1.89
300 322 4.403432 CACCCATGCTTGGATTCAAATACT 59.597 41.667 19.85 0.00 46.92 2.12
301 323 5.593909 CACCCATGCTTGGATTCAAATACTA 59.406 40.000 19.85 0.00 46.92 1.82
302 324 6.096705 CACCCATGCTTGGATTCAAATACTAA 59.903 38.462 19.85 0.00 46.92 2.24
303 325 6.667414 ACCCATGCTTGGATTCAAATACTAAA 59.333 34.615 19.85 0.00 46.92 1.85
304 326 7.147846 ACCCATGCTTGGATTCAAATACTAAAG 60.148 37.037 19.85 0.15 46.92 1.85
305 327 7.068593 CCCATGCTTGGATTCAAATACTAAAGA 59.931 37.037 19.85 0.00 46.92 2.52
306 328 8.133627 CCATGCTTGGATTCAAATACTAAAGAG 58.866 37.037 13.33 0.00 46.92 2.85
307 329 8.896744 CATGCTTGGATTCAAATACTAAAGAGA 58.103 33.333 0.00 0.00 31.77 3.10
308 330 8.268850 TGCTTGGATTCAAATACTAAAGAGAC 57.731 34.615 0.00 0.00 31.77 3.36
309 331 8.103305 TGCTTGGATTCAAATACTAAAGAGACT 58.897 33.333 0.00 0.00 31.77 3.24
310 332 9.601217 GCTTGGATTCAAATACTAAAGAGACTA 57.399 33.333 0.00 0.00 31.77 2.59
342 364 9.866655 AAGTTATTGAGCATTTATTATCCTCCA 57.133 29.630 0.00 0.00 0.00 3.86
343 365 9.866655 AGTTATTGAGCATTTATTATCCTCCAA 57.133 29.630 0.00 0.00 0.00 3.53
346 368 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
347 369 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
348 370 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
349 371 6.071320 AGCATTTATTATCCTCCAAACCCTC 58.929 40.000 0.00 0.00 0.00 4.30
350 372 5.243954 GCATTTATTATCCTCCAAACCCTCC 59.756 44.000 0.00 0.00 0.00 4.30
351 373 6.372931 CATTTATTATCCTCCAAACCCTCCA 58.627 40.000 0.00 0.00 0.00 3.86
352 374 6.410222 TTTATTATCCTCCAAACCCTCCAA 57.590 37.500 0.00 0.00 0.00 3.53
353 375 6.606241 TTATTATCCTCCAAACCCTCCAAT 57.394 37.500 0.00 0.00 0.00 3.16
354 376 4.965283 TTATCCTCCAAACCCTCCAATT 57.035 40.909 0.00 0.00 0.00 2.32
355 377 2.899303 TCCTCCAAACCCTCCAATTC 57.101 50.000 0.00 0.00 0.00 2.17
356 378 2.069775 TCCTCCAAACCCTCCAATTCA 58.930 47.619 0.00 0.00 0.00 2.57
357 379 2.041620 TCCTCCAAACCCTCCAATTCAG 59.958 50.000 0.00 0.00 0.00 3.02
358 380 2.041620 CCTCCAAACCCTCCAATTCAGA 59.958 50.000 0.00 0.00 0.00 3.27
359 381 3.500289 CCTCCAAACCCTCCAATTCAGAA 60.500 47.826 0.00 0.00 0.00 3.02
360 382 3.496331 TCCAAACCCTCCAATTCAGAAC 58.504 45.455 0.00 0.00 0.00 3.01
361 383 3.140144 TCCAAACCCTCCAATTCAGAACT 59.860 43.478 0.00 0.00 0.00 3.01
362 384 3.507622 CCAAACCCTCCAATTCAGAACTC 59.492 47.826 0.00 0.00 0.00 3.01
363 385 2.770164 ACCCTCCAATTCAGAACTCG 57.230 50.000 0.00 0.00 0.00 4.18
364 386 1.339151 ACCCTCCAATTCAGAACTCGC 60.339 52.381 0.00 0.00 0.00 5.03
365 387 1.339055 CCCTCCAATTCAGAACTCGCA 60.339 52.381 0.00 0.00 0.00 5.10
366 388 2.636830 CCTCCAATTCAGAACTCGCAT 58.363 47.619 0.00 0.00 0.00 4.73
367 389 2.353889 CCTCCAATTCAGAACTCGCATG 59.646 50.000 0.00 0.00 0.00 4.06
368 390 3.005554 CTCCAATTCAGAACTCGCATGT 58.994 45.455 0.00 0.00 0.00 3.21
369 391 2.743664 TCCAATTCAGAACTCGCATGTG 59.256 45.455 0.00 0.00 0.00 3.21
370 392 2.485426 CCAATTCAGAACTCGCATGTGT 59.515 45.455 6.09 0.00 0.00 3.72
371 393 3.058016 CCAATTCAGAACTCGCATGTGTT 60.058 43.478 6.09 3.50 34.68 3.32
372 394 4.154015 CCAATTCAGAACTCGCATGTGTTA 59.846 41.667 6.09 0.00 32.29 2.41
373 395 5.334802 CCAATTCAGAACTCGCATGTGTTAA 60.335 40.000 6.09 0.00 32.29 2.01
374 396 5.940192 ATTCAGAACTCGCATGTGTTAAA 57.060 34.783 6.09 1.01 32.29 1.52
375 397 4.990543 TCAGAACTCGCATGTGTTAAAG 57.009 40.909 6.09 0.00 32.29 1.85
376 398 3.745975 TCAGAACTCGCATGTGTTAAAGG 59.254 43.478 6.09 0.00 32.29 3.11
377 399 3.745975 CAGAACTCGCATGTGTTAAAGGA 59.254 43.478 6.09 0.00 32.29 3.36
378 400 3.997021 AGAACTCGCATGTGTTAAAGGAG 59.003 43.478 6.09 0.00 32.29 3.69
379 401 3.678056 ACTCGCATGTGTTAAAGGAGA 57.322 42.857 6.09 0.00 0.00 3.71
380 402 3.589988 ACTCGCATGTGTTAAAGGAGAG 58.410 45.455 6.09 0.00 0.00 3.20
381 403 2.932614 CTCGCATGTGTTAAAGGAGAGG 59.067 50.000 6.09 0.00 0.00 3.69
382 404 2.565391 TCGCATGTGTTAAAGGAGAGGA 59.435 45.455 6.09 0.00 0.00 3.71
383 405 3.007506 TCGCATGTGTTAAAGGAGAGGAA 59.992 43.478 6.09 0.00 0.00 3.36
384 406 3.941483 CGCATGTGTTAAAGGAGAGGAAT 59.059 43.478 0.00 0.00 0.00 3.01
385 407 4.396166 CGCATGTGTTAAAGGAGAGGAATT 59.604 41.667 0.00 0.00 0.00 2.17
386 408 5.584649 CGCATGTGTTAAAGGAGAGGAATTA 59.415 40.000 0.00 0.00 0.00 1.40
387 409 6.093495 CGCATGTGTTAAAGGAGAGGAATTAA 59.907 38.462 0.00 0.00 0.00 1.40
388 410 7.361713 CGCATGTGTTAAAGGAGAGGAATTAAA 60.362 37.037 0.00 0.00 0.00 1.52
389 411 8.470002 GCATGTGTTAAAGGAGAGGAATTAAAT 58.530 33.333 0.00 0.00 0.00 1.40
390 412 9.793252 CATGTGTTAAAGGAGAGGAATTAAATG 57.207 33.333 0.00 0.00 0.00 2.32
391 413 9.753674 ATGTGTTAAAGGAGAGGAATTAAATGA 57.246 29.630 0.00 0.00 0.00 2.57
392 414 9.231297 TGTGTTAAAGGAGAGGAATTAAATGAG 57.769 33.333 0.00 0.00 0.00 2.90
393 415 8.678199 GTGTTAAAGGAGAGGAATTAAATGAGG 58.322 37.037 0.00 0.00 0.00 3.86
394 416 8.611257 TGTTAAAGGAGAGGAATTAAATGAGGA 58.389 33.333 0.00 0.00 0.00 3.71
395 417 9.114952 GTTAAAGGAGAGGAATTAAATGAGGAG 57.885 37.037 0.00 0.00 0.00 3.69
396 418 7.516450 AAAGGAGAGGAATTAAATGAGGAGA 57.484 36.000 0.00 0.00 0.00 3.71
397 419 6.745794 AGGAGAGGAATTAAATGAGGAGAG 57.254 41.667 0.00 0.00 0.00 3.20
398 420 6.448202 AGGAGAGGAATTAAATGAGGAGAGA 58.552 40.000 0.00 0.00 0.00 3.10
399 421 6.554605 AGGAGAGGAATTAAATGAGGAGAGAG 59.445 42.308 0.00 0.00 0.00 3.20
400 422 6.553100 GGAGAGGAATTAAATGAGGAGAGAGA 59.447 42.308 0.00 0.00 0.00 3.10
401 423 7.255942 GGAGAGGAATTAAATGAGGAGAGAGAG 60.256 44.444 0.00 0.00 0.00 3.20
402 424 6.554605 AGAGGAATTAAATGAGGAGAGAGAGG 59.445 42.308 0.00 0.00 0.00 3.69
403 425 5.606329 AGGAATTAAATGAGGAGAGAGAGGG 59.394 44.000 0.00 0.00 0.00 4.30
404 426 4.972751 ATTAAATGAGGAGAGAGAGGGC 57.027 45.455 0.00 0.00 0.00 5.19
405 427 2.566708 AAATGAGGAGAGAGAGGGCT 57.433 50.000 0.00 0.00 0.00 5.19
406 428 3.697190 AAATGAGGAGAGAGAGGGCTA 57.303 47.619 0.00 0.00 0.00 3.93
407 429 3.697190 AATGAGGAGAGAGAGGGCTAA 57.303 47.619 0.00 0.00 0.00 3.09
408 430 3.921287 ATGAGGAGAGAGAGGGCTAAT 57.079 47.619 0.00 0.00 0.00 1.73
409 431 5.346782 AATGAGGAGAGAGAGGGCTAATA 57.653 43.478 0.00 0.00 0.00 0.98
410 432 4.107127 TGAGGAGAGAGAGGGCTAATAC 57.893 50.000 0.00 0.00 0.00 1.89
411 433 3.463704 TGAGGAGAGAGAGGGCTAATACA 59.536 47.826 0.00 0.00 0.00 2.29
412 434 4.107149 TGAGGAGAGAGAGGGCTAATACAT 59.893 45.833 0.00 0.00 0.00 2.29
413 435 5.313506 TGAGGAGAGAGAGGGCTAATACATA 59.686 44.000 0.00 0.00 0.00 2.29
414 436 6.011185 TGAGGAGAGAGAGGGCTAATACATAT 60.011 42.308 0.00 0.00 0.00 1.78
415 437 6.810500 AGGAGAGAGAGGGCTAATACATATT 58.189 40.000 0.00 0.00 0.00 1.28
416 438 7.252678 AGGAGAGAGAGGGCTAATACATATTT 58.747 38.462 0.00 0.00 0.00 1.40
417 439 7.737149 AGGAGAGAGAGGGCTAATACATATTTT 59.263 37.037 0.00 0.00 0.00 1.82
418 440 9.036980 GGAGAGAGAGGGCTAATACATATTTTA 57.963 37.037 0.00 0.00 0.00 1.52
420 442 9.608718 AGAGAGAGGGCTAATACATATTTTAGT 57.391 33.333 0.00 0.00 0.00 2.24
424 446 9.617053 AGAGGGCTAATACATATTTTAGTAGGT 57.383 33.333 0.00 0.00 0.00 3.08
462 484 8.926092 AAAAATTTTAGCCTCAAGACTAGTCT 57.074 30.769 20.00 20.00 42.75 3.24
477 499 6.965607 AGACTAGTCTTAGCCTCTCTTTAGT 58.034 40.000 20.00 0.00 36.31 2.24
478 500 7.052248 AGACTAGTCTTAGCCTCTCTTTAGTC 58.948 42.308 20.00 0.00 36.31 2.59
479 501 6.723339 ACTAGTCTTAGCCTCTCTTTAGTCA 58.277 40.000 0.00 0.00 0.00 3.41
480 502 6.826741 ACTAGTCTTAGCCTCTCTTTAGTCAG 59.173 42.308 0.00 0.00 0.00 3.51
481 503 4.953579 AGTCTTAGCCTCTCTTTAGTCAGG 59.046 45.833 0.00 0.00 0.00 3.86
482 504 4.098807 GTCTTAGCCTCTCTTTAGTCAGGG 59.901 50.000 0.00 0.00 0.00 4.45
483 505 1.872773 AGCCTCTCTTTAGTCAGGGG 58.127 55.000 0.00 0.00 0.00 4.79
484 506 1.079658 AGCCTCTCTTTAGTCAGGGGT 59.920 52.381 0.00 0.00 0.00 4.95
485 507 1.208293 GCCTCTCTTTAGTCAGGGGTG 59.792 57.143 0.00 0.00 0.00 4.61
486 508 1.208293 CCTCTCTTTAGTCAGGGGTGC 59.792 57.143 0.00 0.00 0.00 5.01
487 509 2.183679 CTCTCTTTAGTCAGGGGTGCT 58.816 52.381 0.00 0.00 0.00 4.40
488 510 2.569404 CTCTCTTTAGTCAGGGGTGCTT 59.431 50.000 0.00 0.00 0.00 3.91
489 511 2.303022 TCTCTTTAGTCAGGGGTGCTTG 59.697 50.000 0.00 0.00 0.00 4.01
490 512 1.351017 TCTTTAGTCAGGGGTGCTTGG 59.649 52.381 0.00 0.00 0.00 3.61
491 513 1.351017 CTTTAGTCAGGGGTGCTTGGA 59.649 52.381 0.00 0.00 0.00 3.53
492 514 1.440618 TTAGTCAGGGGTGCTTGGAA 58.559 50.000 0.00 0.00 0.00 3.53
493 515 0.690762 TAGTCAGGGGTGCTTGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
494 516 1.062488 AGTCAGGGGTGCTTGGAACT 61.062 55.000 0.00 0.00 0.00 3.01
495 517 0.178990 GTCAGGGGTGCTTGGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
496 518 0.555769 TCAGGGGTGCTTGGAACTTT 59.444 50.000 0.00 0.00 0.00 2.66
497 519 1.777878 TCAGGGGTGCTTGGAACTTTA 59.222 47.619 0.00 0.00 0.00 1.85
498 520 2.162681 CAGGGGTGCTTGGAACTTTAG 58.837 52.381 0.00 0.00 0.00 1.85
499 521 1.780919 AGGGGTGCTTGGAACTTTAGT 59.219 47.619 0.00 0.00 0.00 2.24
500 522 2.160205 GGGGTGCTTGGAACTTTAGTC 58.840 52.381 0.00 0.00 0.00 2.59
501 523 2.224793 GGGGTGCTTGGAACTTTAGTCT 60.225 50.000 0.00 0.00 0.00 3.24
502 524 3.487372 GGGTGCTTGGAACTTTAGTCTT 58.513 45.455 0.00 0.00 0.00 3.01
503 525 3.889538 GGGTGCTTGGAACTTTAGTCTTT 59.110 43.478 0.00 0.00 0.00 2.52
504 526 5.067954 GGGTGCTTGGAACTTTAGTCTTTA 58.932 41.667 0.00 0.00 0.00 1.85
505 527 5.533528 GGGTGCTTGGAACTTTAGTCTTTAA 59.466 40.000 0.00 0.00 0.00 1.52
506 528 6.040054 GGGTGCTTGGAACTTTAGTCTTTAAA 59.960 38.462 0.00 0.00 0.00 1.52
507 529 7.417003 GGGTGCTTGGAACTTTAGTCTTTAAAA 60.417 37.037 0.00 0.00 0.00 1.52
508 530 7.977293 GGTGCTTGGAACTTTAGTCTTTAAAAA 59.023 33.333 0.00 0.00 0.00 1.94
543 565 9.720769 TTTAGTCAGACTAAAAATAGTCCCTTG 57.279 33.333 26.93 5.29 44.84 3.61
544 566 6.712276 AGTCAGACTAAAAATAGTCCCTTGG 58.288 40.000 0.00 0.00 45.66 3.61
545 567 6.500751 AGTCAGACTAAAAATAGTCCCTTGGA 59.499 38.462 0.00 1.82 45.66 3.53
546 568 7.182930 AGTCAGACTAAAAATAGTCCCTTGGAT 59.817 37.037 0.00 0.00 45.66 3.41
547 569 7.496263 GTCAGACTAAAAATAGTCCCTTGGATC 59.504 40.741 11.35 0.00 45.66 3.36
548 570 6.768381 CAGACTAAAAATAGTCCCTTGGATCC 59.232 42.308 4.20 4.20 45.66 3.36
549 571 6.447084 AGACTAAAAATAGTCCCTTGGATCCA 59.553 38.462 11.44 11.44 45.66 3.41
550 572 7.036863 AGACTAAAAATAGTCCCTTGGATCCAA 60.037 37.037 25.53 25.53 45.66 3.53
551 573 7.283354 GACTAAAAATAGTCCCTTGGATCCAAG 59.717 40.741 37.68 37.68 42.75 3.61
574 596 8.616076 CAAGCACCCTCTAAATATAAGTCTTTG 58.384 37.037 0.00 0.00 0.00 2.77
595 617 3.531538 GGAGATTTTGCTCCGTATGTGA 58.468 45.455 0.00 0.00 44.52 3.58
598 620 5.758296 GGAGATTTTGCTCCGTATGTGATTA 59.242 40.000 0.00 0.00 44.52 1.75
604 626 9.772973 ATTTTGCTCCGTATGTGATTAATAGTA 57.227 29.630 0.00 0.00 0.00 1.82
645 667 3.118519 GCATTTAGGAACGGAGGGAGTAA 60.119 47.826 0.00 0.00 0.00 2.24
1008 1144 0.980754 TCCCGCCAGCTTAGATCCAA 60.981 55.000 0.00 0.00 0.00 3.53
1009 1145 0.107214 CCCGCCAGCTTAGATCCAAA 60.107 55.000 0.00 0.00 0.00 3.28
1194 1343 1.606885 GGACGACCACACCGGGATAA 61.607 60.000 6.32 0.00 40.22 1.75
1257 1406 3.058160 CCGCCCTCCACAGCAAAG 61.058 66.667 0.00 0.00 0.00 2.77
1293 1445 4.777546 AGCTGGGGCCCCATGGTA 62.778 66.667 44.00 21.58 46.15 3.25
1389 1552 3.058520 CGTTGTATGTACACAGTACACGC 59.941 47.826 11.74 8.52 35.64 5.34
1420 1583 1.529226 CAACGAGCCAACCACCATTA 58.471 50.000 0.00 0.00 0.00 1.90
1445 1610 4.700365 TCAGGACGCGCACGACTG 62.700 66.667 5.73 10.10 43.93 3.51
1798 1969 0.179067 ACGCTCCGAGTGGAAAAACA 60.179 50.000 13.45 0.00 45.87 2.83
1837 2008 2.985847 GCCGAGGCTGCCAAAGTT 60.986 61.111 22.65 0.00 38.26 2.66
1929 2112 0.944386 CATTATTGTTCCTCGGCGGG 59.056 55.000 7.21 1.99 0.00 6.13
1930 2113 0.179029 ATTATTGTTCCTCGGCGGGG 60.179 55.000 22.64 22.64 0.00 5.73
1931 2114 1.266160 TTATTGTTCCTCGGCGGGGA 61.266 55.000 27.67 27.67 0.00 4.81
1932 2115 1.963464 TATTGTTCCTCGGCGGGGAC 61.963 60.000 31.50 23.19 35.47 4.46
1984 2167 3.000022 GCTCCTTTGATTACGTTAGCGAC 60.000 47.826 5.81 0.00 42.00 5.19
2101 2284 3.710209 AAGCTGTCAGTAAAGCCTCAT 57.290 42.857 0.93 0.00 40.42 2.90
2276 3645 5.717119 AAGCAAATCTAGGGTCCTTGTAT 57.283 39.130 0.00 0.00 0.00 2.29
2291 3660 6.349944 GGTCCTTGTATCCTATACGTGTATGG 60.350 46.154 0.00 0.00 0.00 2.74
2505 3880 1.155889 CACAAATGCAGGCAGACGTA 58.844 50.000 0.00 0.00 0.00 3.57
2506 3881 1.135972 CACAAATGCAGGCAGACGTAC 60.136 52.381 0.00 0.00 0.00 3.67
2507 3882 0.095245 CAAATGCAGGCAGACGTACG 59.905 55.000 15.01 15.01 0.00 3.67
2508 3883 0.320421 AAATGCAGGCAGACGTACGT 60.320 50.000 23.04 23.04 0.00 3.57
2535 3910 4.427394 GCCCAGAGCAGACATACG 57.573 61.111 0.00 0.00 42.97 3.06
2570 3945 4.678044 GCTCGAACAGAGGATACATCACAA 60.678 45.833 0.00 0.00 46.91 3.33
2606 3981 4.845580 AGGCAAGAGCGGCGATGG 62.846 66.667 12.98 0.00 43.41 3.51
2633 4008 2.113860 ACAAGAATCCCACCATCACG 57.886 50.000 0.00 0.00 0.00 4.35
2646 4021 0.453282 CATCACGCGAGCCAAAACTG 60.453 55.000 15.93 0.00 0.00 3.16
2647 4022 2.187599 ATCACGCGAGCCAAAACTGC 62.188 55.000 15.93 0.00 0.00 4.40
2697 4072 3.194116 CCCTGTTCATGCACATTAGCTTT 59.806 43.478 0.00 0.00 34.99 3.51
2707 4082 3.671928 GCACATTAGCTTTTCTGTTGCTG 59.328 43.478 0.00 0.00 37.62 4.41
2716 5251 0.961019 TTCTGTTGCTGCCATTGTCC 59.039 50.000 0.00 0.00 0.00 4.02
2719 5254 1.236616 TGTTGCTGCCATTGTCCTCG 61.237 55.000 0.00 0.00 0.00 4.63
2748 5284 7.609960 CACCTAGACATATTAGCACATCTCAT 58.390 38.462 0.00 0.00 0.00 2.90
2807 5343 1.364721 TATTCACCGCACATGTTCCG 58.635 50.000 0.00 1.70 0.00 4.30
2848 5385 5.047519 GCGATTAGTTAGCCCTAGAATACCA 60.048 44.000 0.00 0.00 0.00 3.25
2880 5417 3.756434 AGAGCCTCTCGAATCATACTAGC 59.244 47.826 0.00 0.00 35.36 3.42
2961 6633 3.829601 TGCCCACGGAAATCTTATTTGTT 59.170 39.130 0.00 0.00 0.00 2.83
2968 6640 6.033831 CACGGAAATCTTATTTGTTGATGCAC 59.966 38.462 0.00 0.00 0.00 4.57
2969 6641 6.092092 CGGAAATCTTATTTGTTGATGCACA 58.908 36.000 0.00 0.00 0.00 4.57
3006 6678 7.320443 TCCATTTGTCTCCAAATTTCGATAG 57.680 36.000 0.00 0.00 46.61 2.08
3036 6708 6.523840 CATTTGATTGGTGGGAAAGAAAAGA 58.476 36.000 0.00 0.00 0.00 2.52
3037 6709 6.552445 TTTGATTGGTGGGAAAGAAAAGAA 57.448 33.333 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 38 6.019318 GTGTGCCGTCTCGTTGTAATATTAAT 60.019 38.462 0.00 0.00 0.00 1.40
44 52 2.103042 GCCTCATGTGTGCCGTCTC 61.103 63.158 0.00 0.00 0.00 3.36
64 72 1.266989 GGTGGCGTTTTCCTTTCAGAG 59.733 52.381 0.00 0.00 0.00 3.35
65 73 1.133915 AGGTGGCGTTTTCCTTTCAGA 60.134 47.619 0.00 0.00 0.00 3.27
66 74 1.001378 CAGGTGGCGTTTTCCTTTCAG 60.001 52.381 0.00 0.00 0.00 3.02
67 75 1.028905 CAGGTGGCGTTTTCCTTTCA 58.971 50.000 0.00 0.00 0.00 2.69
68 76 0.318699 GCAGGTGGCGTTTTCCTTTC 60.319 55.000 0.00 0.00 0.00 2.62
97 105 2.361610 CAGGCACACCCACCCATC 60.362 66.667 0.00 0.00 36.11 3.51
144 152 7.121611 AGGGGAATTTTGTTAGTTAATGTACCG 59.878 37.037 0.00 0.00 0.00 4.02
145 153 8.248253 CAGGGGAATTTTGTTAGTTAATGTACC 58.752 37.037 0.00 0.00 0.00 3.34
187 208 4.592485 AACGAGGGAGTAGATAGCAATG 57.408 45.455 0.00 0.00 0.00 2.82
209 231 2.693591 CGTATCCAAGCACCCTCTTAGA 59.306 50.000 0.00 0.00 0.00 2.10
210 232 2.431057 ACGTATCCAAGCACCCTCTTAG 59.569 50.000 0.00 0.00 0.00 2.18
211 233 2.463752 ACGTATCCAAGCACCCTCTTA 58.536 47.619 0.00 0.00 0.00 2.10
212 234 1.276622 ACGTATCCAAGCACCCTCTT 58.723 50.000 0.00 0.00 0.00 2.85
213 235 1.276622 AACGTATCCAAGCACCCTCT 58.723 50.000 0.00 0.00 0.00 3.69
214 236 2.109425 AAACGTATCCAAGCACCCTC 57.891 50.000 0.00 0.00 0.00 4.30
215 237 2.579410 AAAACGTATCCAAGCACCCT 57.421 45.000 0.00 0.00 0.00 4.34
216 238 3.340928 ACTAAAACGTATCCAAGCACCC 58.659 45.455 0.00 0.00 0.00 4.61
217 239 3.373130 GGACTAAAACGTATCCAAGCACC 59.627 47.826 0.00 0.00 0.00 5.01
218 240 3.373130 GGGACTAAAACGTATCCAAGCAC 59.627 47.826 0.00 0.00 32.45 4.40
219 241 3.008157 TGGGACTAAAACGTATCCAAGCA 59.992 43.478 0.00 0.00 32.45 3.91
220 242 3.602483 TGGGACTAAAACGTATCCAAGC 58.398 45.455 0.00 0.00 32.45 4.01
221 243 5.293569 GTCATGGGACTAAAACGTATCCAAG 59.706 44.000 0.00 0.00 40.99 3.61
222 244 5.180271 GTCATGGGACTAAAACGTATCCAA 58.820 41.667 0.00 0.00 40.99 3.53
223 245 4.761975 GTCATGGGACTAAAACGTATCCA 58.238 43.478 0.00 0.00 40.99 3.41
238 260 4.225267 AGTCCCACTACTTTTAGTCATGGG 59.775 45.833 16.70 16.70 46.94 4.00
239 261 5.422214 AGTCCCACTACTTTTAGTCATGG 57.578 43.478 0.00 0.00 36.31 3.66
240 262 8.718734 GTTTTAGTCCCACTACTTTTAGTCATG 58.281 37.037 0.00 0.00 36.31 3.07
241 263 8.657712 AGTTTTAGTCCCACTACTTTTAGTCAT 58.342 33.333 0.00 0.00 36.31 3.06
242 264 8.026396 AGTTTTAGTCCCACTACTTTTAGTCA 57.974 34.615 0.00 0.00 36.31 3.41
243 265 8.771766 CAAGTTTTAGTCCCACTACTTTTAGTC 58.228 37.037 0.00 0.00 36.31 2.59
244 266 7.228108 GCAAGTTTTAGTCCCACTACTTTTAGT 59.772 37.037 0.00 0.00 39.30 2.24
245 267 7.444487 AGCAAGTTTTAGTCCCACTACTTTTAG 59.556 37.037 0.00 0.00 28.93 1.85
246 268 7.284820 AGCAAGTTTTAGTCCCACTACTTTTA 58.715 34.615 0.00 0.00 28.93 1.52
247 269 6.127101 AGCAAGTTTTAGTCCCACTACTTTT 58.873 36.000 0.00 0.00 28.93 2.27
248 270 5.691896 AGCAAGTTTTAGTCCCACTACTTT 58.308 37.500 0.00 0.00 28.93 2.66
249 271 5.306114 AGCAAGTTTTAGTCCCACTACTT 57.694 39.130 0.00 0.00 28.93 2.24
250 272 4.976540 AGCAAGTTTTAGTCCCACTACT 57.023 40.909 0.00 0.00 28.93 2.57
251 273 4.630505 GCTAGCAAGTTTTAGTCCCACTAC 59.369 45.833 10.63 0.00 28.93 2.73
252 274 4.323257 GGCTAGCAAGTTTTAGTCCCACTA 60.323 45.833 18.24 0.00 0.00 2.74
253 275 3.559384 GGCTAGCAAGTTTTAGTCCCACT 60.559 47.826 18.24 0.00 0.00 4.00
254 276 2.747989 GGCTAGCAAGTTTTAGTCCCAC 59.252 50.000 18.24 0.00 0.00 4.61
255 277 2.642807 AGGCTAGCAAGTTTTAGTCCCA 59.357 45.455 18.24 0.00 0.00 4.37
256 278 3.271729 GAGGCTAGCAAGTTTTAGTCCC 58.728 50.000 18.24 0.00 0.00 4.46
257 279 3.685272 GTGAGGCTAGCAAGTTTTAGTCC 59.315 47.826 18.24 0.00 0.00 3.85
258 280 3.685272 GGTGAGGCTAGCAAGTTTTAGTC 59.315 47.826 18.24 0.00 0.00 2.59
259 281 3.559384 GGGTGAGGCTAGCAAGTTTTAGT 60.559 47.826 18.24 0.00 0.00 2.24
260 282 3.010420 GGGTGAGGCTAGCAAGTTTTAG 58.990 50.000 18.24 0.00 0.00 1.85
261 283 2.373836 TGGGTGAGGCTAGCAAGTTTTA 59.626 45.455 18.24 0.00 0.00 1.52
262 284 1.144913 TGGGTGAGGCTAGCAAGTTTT 59.855 47.619 18.24 0.00 0.00 2.43
263 285 0.771127 TGGGTGAGGCTAGCAAGTTT 59.229 50.000 18.24 0.00 0.00 2.66
264 286 0.995024 ATGGGTGAGGCTAGCAAGTT 59.005 50.000 18.24 0.00 0.00 2.66
265 287 0.254178 CATGGGTGAGGCTAGCAAGT 59.746 55.000 18.24 0.00 0.00 3.16
266 288 1.099879 GCATGGGTGAGGCTAGCAAG 61.100 60.000 18.24 0.00 0.00 4.01
267 289 1.077501 GCATGGGTGAGGCTAGCAA 60.078 57.895 18.24 0.00 0.00 3.91
268 290 1.565390 AAGCATGGGTGAGGCTAGCA 61.565 55.000 18.24 0.00 42.15 3.49
269 291 1.099879 CAAGCATGGGTGAGGCTAGC 61.100 60.000 6.04 6.04 42.15 3.42
270 292 0.465097 CCAAGCATGGGTGAGGCTAG 60.465 60.000 0.00 0.00 42.15 3.42
271 293 0.913934 TCCAAGCATGGGTGAGGCTA 60.914 55.000 8.36 0.00 42.15 3.93
272 294 1.578215 ATCCAAGCATGGGTGAGGCT 61.578 55.000 8.36 0.00 45.93 4.58
281 303 8.896744 TCTCTTTAGTATTTGAATCCAAGCATG 58.103 33.333 0.00 0.00 33.23 4.06
282 304 8.897752 GTCTCTTTAGTATTTGAATCCAAGCAT 58.102 33.333 0.00 0.00 33.23 3.79
283 305 8.103305 AGTCTCTTTAGTATTTGAATCCAAGCA 58.897 33.333 0.00 0.00 33.23 3.91
284 306 8.499403 AGTCTCTTTAGTATTTGAATCCAAGC 57.501 34.615 0.00 0.00 33.23 4.01
302 324 9.507329 TGCTCAATAACTTGATTTTAGTCTCTT 57.493 29.630 0.00 0.00 40.52 2.85
303 325 9.678260 ATGCTCAATAACTTGATTTTAGTCTCT 57.322 29.630 0.00 0.00 40.52 3.10
316 338 9.866655 TGGAGGATAATAAATGCTCAATAACTT 57.133 29.630 8.48 0.00 38.10 2.66
317 339 9.866655 TTGGAGGATAATAAATGCTCAATAACT 57.133 29.630 8.48 0.00 38.10 2.24
320 342 9.077885 GGTTTGGAGGATAATAAATGCTCAATA 57.922 33.333 8.48 0.00 38.10 1.90
321 343 7.015584 GGGTTTGGAGGATAATAAATGCTCAAT 59.984 37.037 8.48 0.00 38.10 2.57
322 344 6.323739 GGGTTTGGAGGATAATAAATGCTCAA 59.676 38.462 8.48 0.00 38.10 3.02
323 345 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
324 346 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
325 347 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
326 348 5.243954 GGAGGGTTTGGAGGATAATAAATGC 59.756 44.000 0.00 0.00 0.00 3.56
327 349 6.372931 TGGAGGGTTTGGAGGATAATAAATG 58.627 40.000 0.00 0.00 0.00 2.32
328 350 6.606241 TGGAGGGTTTGGAGGATAATAAAT 57.394 37.500 0.00 0.00 0.00 1.40
329 351 6.410222 TTGGAGGGTTTGGAGGATAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
330 352 6.606241 ATTGGAGGGTTTGGAGGATAATAA 57.394 37.500 0.00 0.00 0.00 1.40
331 353 6.161348 TGAATTGGAGGGTTTGGAGGATAATA 59.839 38.462 0.00 0.00 0.00 0.98
332 354 5.043432 TGAATTGGAGGGTTTGGAGGATAAT 60.043 40.000 0.00 0.00 0.00 1.28
333 355 4.293634 TGAATTGGAGGGTTTGGAGGATAA 59.706 41.667 0.00 0.00 0.00 1.75
334 356 3.855599 TGAATTGGAGGGTTTGGAGGATA 59.144 43.478 0.00 0.00 0.00 2.59
335 357 2.654385 TGAATTGGAGGGTTTGGAGGAT 59.346 45.455 0.00 0.00 0.00 3.24
336 358 2.041620 CTGAATTGGAGGGTTTGGAGGA 59.958 50.000 0.00 0.00 0.00 3.71
337 359 2.041620 TCTGAATTGGAGGGTTTGGAGG 59.958 50.000 0.00 0.00 0.00 4.30
338 360 3.439857 TCTGAATTGGAGGGTTTGGAG 57.560 47.619 0.00 0.00 0.00 3.86
339 361 3.140144 AGTTCTGAATTGGAGGGTTTGGA 59.860 43.478 0.00 0.00 0.00 3.53
340 362 3.500343 AGTTCTGAATTGGAGGGTTTGG 58.500 45.455 0.00 0.00 0.00 3.28
341 363 3.189287 CGAGTTCTGAATTGGAGGGTTTG 59.811 47.826 0.00 0.00 0.00 2.93
342 364 3.412386 CGAGTTCTGAATTGGAGGGTTT 58.588 45.455 0.00 0.00 0.00 3.27
343 365 2.876079 GCGAGTTCTGAATTGGAGGGTT 60.876 50.000 0.00 0.00 0.00 4.11
344 366 1.339151 GCGAGTTCTGAATTGGAGGGT 60.339 52.381 0.00 0.00 0.00 4.34
345 367 1.339055 TGCGAGTTCTGAATTGGAGGG 60.339 52.381 0.00 0.00 0.00 4.30
346 368 2.099141 TGCGAGTTCTGAATTGGAGG 57.901 50.000 0.00 0.00 0.00 4.30
347 369 3.005554 ACATGCGAGTTCTGAATTGGAG 58.994 45.455 0.00 0.00 0.00 3.86
348 370 2.743664 CACATGCGAGTTCTGAATTGGA 59.256 45.455 0.00 0.00 0.00 3.53
349 371 2.485426 ACACATGCGAGTTCTGAATTGG 59.515 45.455 0.00 0.00 0.00 3.16
350 372 3.818961 ACACATGCGAGTTCTGAATTG 57.181 42.857 0.00 0.00 0.00 2.32
351 373 5.940192 TTAACACATGCGAGTTCTGAATT 57.060 34.783 0.00 0.00 0.00 2.17
352 374 5.106555 CCTTTAACACATGCGAGTTCTGAAT 60.107 40.000 0.00 0.00 0.00 2.57
353 375 4.213270 CCTTTAACACATGCGAGTTCTGAA 59.787 41.667 0.00 0.00 0.00 3.02
354 376 3.745975 CCTTTAACACATGCGAGTTCTGA 59.254 43.478 0.00 0.00 0.00 3.27
355 377 3.745975 TCCTTTAACACATGCGAGTTCTG 59.254 43.478 0.00 0.00 0.00 3.02
356 378 3.997021 CTCCTTTAACACATGCGAGTTCT 59.003 43.478 0.00 0.00 0.00 3.01
357 379 3.994392 TCTCCTTTAACACATGCGAGTTC 59.006 43.478 0.00 0.00 0.00 3.01
358 380 3.997021 CTCTCCTTTAACACATGCGAGTT 59.003 43.478 0.00 0.00 0.00 3.01
359 381 3.589988 CTCTCCTTTAACACATGCGAGT 58.410 45.455 0.00 0.00 0.00 4.18
360 382 2.932614 CCTCTCCTTTAACACATGCGAG 59.067 50.000 0.00 0.00 0.00 5.03
361 383 2.565391 TCCTCTCCTTTAACACATGCGA 59.435 45.455 0.00 0.00 0.00 5.10
362 384 2.972625 TCCTCTCCTTTAACACATGCG 58.027 47.619 0.00 0.00 0.00 4.73
363 385 5.904362 AATTCCTCTCCTTTAACACATGC 57.096 39.130 0.00 0.00 0.00 4.06
364 386 9.793252 CATTTAATTCCTCTCCTTTAACACATG 57.207 33.333 0.00 0.00 0.00 3.21
365 387 9.753674 TCATTTAATTCCTCTCCTTTAACACAT 57.246 29.630 0.00 0.00 0.00 3.21
366 388 9.231297 CTCATTTAATTCCTCTCCTTTAACACA 57.769 33.333 0.00 0.00 0.00 3.72
367 389 8.678199 CCTCATTTAATTCCTCTCCTTTAACAC 58.322 37.037 0.00 0.00 0.00 3.32
368 390 8.611257 TCCTCATTTAATTCCTCTCCTTTAACA 58.389 33.333 0.00 0.00 0.00 2.41
369 391 9.114952 CTCCTCATTTAATTCCTCTCCTTTAAC 57.885 37.037 0.00 0.00 0.00 2.01
370 392 9.057911 TCTCCTCATTTAATTCCTCTCCTTTAA 57.942 33.333 0.00 0.00 0.00 1.52
371 393 8.624019 TCTCCTCATTTAATTCCTCTCCTTTA 57.376 34.615 0.00 0.00 0.00 1.85
372 394 7.404396 TCTCTCCTCATTTAATTCCTCTCCTTT 59.596 37.037 0.00 0.00 0.00 3.11
373 395 6.905776 TCTCTCCTCATTTAATTCCTCTCCTT 59.094 38.462 0.00 0.00 0.00 3.36
374 396 6.448202 TCTCTCCTCATTTAATTCCTCTCCT 58.552 40.000 0.00 0.00 0.00 3.69
375 397 6.553100 TCTCTCTCCTCATTTAATTCCTCTCC 59.447 42.308 0.00 0.00 0.00 3.71
376 398 7.255942 CCTCTCTCTCCTCATTTAATTCCTCTC 60.256 44.444 0.00 0.00 0.00 3.20
377 399 6.554605 CCTCTCTCTCCTCATTTAATTCCTCT 59.445 42.308 0.00 0.00 0.00 3.69
378 400 6.239572 CCCTCTCTCTCCTCATTTAATTCCTC 60.240 46.154 0.00 0.00 0.00 3.71
379 401 5.606329 CCCTCTCTCTCCTCATTTAATTCCT 59.394 44.000 0.00 0.00 0.00 3.36
380 402 5.744594 GCCCTCTCTCTCCTCATTTAATTCC 60.745 48.000 0.00 0.00 0.00 3.01
381 403 5.071653 AGCCCTCTCTCTCCTCATTTAATTC 59.928 44.000 0.00 0.00 0.00 2.17
382 404 4.974501 AGCCCTCTCTCTCCTCATTTAATT 59.025 41.667 0.00 0.00 0.00 1.40
383 405 4.565817 AGCCCTCTCTCTCCTCATTTAAT 58.434 43.478 0.00 0.00 0.00 1.40
384 406 4.000928 AGCCCTCTCTCTCCTCATTTAA 57.999 45.455 0.00 0.00 0.00 1.52
385 407 3.697190 AGCCCTCTCTCTCCTCATTTA 57.303 47.619 0.00 0.00 0.00 1.40
386 408 2.566708 AGCCCTCTCTCTCCTCATTT 57.433 50.000 0.00 0.00 0.00 2.32
387 409 3.697190 TTAGCCCTCTCTCTCCTCATT 57.303 47.619 0.00 0.00 0.00 2.57
388 410 3.921287 ATTAGCCCTCTCTCTCCTCAT 57.079 47.619 0.00 0.00 0.00 2.90
389 411 3.463704 TGTATTAGCCCTCTCTCTCCTCA 59.536 47.826 0.00 0.00 0.00 3.86
390 412 4.107127 TGTATTAGCCCTCTCTCTCCTC 57.893 50.000 0.00 0.00 0.00 3.71
391 413 4.757997 ATGTATTAGCCCTCTCTCTCCT 57.242 45.455 0.00 0.00 0.00 3.69
392 414 7.489239 AAATATGTATTAGCCCTCTCTCTCC 57.511 40.000 0.00 0.00 0.00 3.71
394 416 9.608718 ACTAAAATATGTATTAGCCCTCTCTCT 57.391 33.333 0.00 0.00 33.39 3.10
398 420 9.617053 ACCTACTAAAATATGTATTAGCCCTCT 57.383 33.333 0.00 0.00 33.39 3.69
437 459 8.926092 AGACTAGTCTTGAGGCTAAAATTTTT 57.074 30.769 20.00 0.00 36.31 1.94
453 475 6.965607 ACTAAAGAGAGGCTAAGACTAGTCT 58.034 40.000 20.00 20.00 43.01 3.24
454 476 6.824704 TGACTAAAGAGAGGCTAAGACTAGTC 59.175 42.308 15.41 15.41 0.00 2.59
455 477 6.723339 TGACTAAAGAGAGGCTAAGACTAGT 58.277 40.000 0.00 0.00 0.00 2.57
456 478 6.262273 CCTGACTAAAGAGAGGCTAAGACTAG 59.738 46.154 0.00 0.00 0.00 2.57
457 479 6.123651 CCTGACTAAAGAGAGGCTAAGACTA 58.876 44.000 0.00 0.00 0.00 2.59
458 480 4.953579 CCTGACTAAAGAGAGGCTAAGACT 59.046 45.833 0.00 0.00 0.00 3.24
459 481 4.098807 CCCTGACTAAAGAGAGGCTAAGAC 59.901 50.000 0.00 0.00 0.00 3.01
460 482 4.282496 CCCTGACTAAAGAGAGGCTAAGA 58.718 47.826 0.00 0.00 0.00 2.10
461 483 3.386402 CCCCTGACTAAAGAGAGGCTAAG 59.614 52.174 0.00 0.00 0.00 2.18
462 484 3.246021 ACCCCTGACTAAAGAGAGGCTAA 60.246 47.826 0.00 0.00 0.00 3.09
463 485 2.315155 ACCCCTGACTAAAGAGAGGCTA 59.685 50.000 0.00 0.00 0.00 3.93
464 486 1.079658 ACCCCTGACTAAAGAGAGGCT 59.920 52.381 0.00 0.00 0.00 4.58
465 487 1.208293 CACCCCTGACTAAAGAGAGGC 59.792 57.143 0.00 0.00 0.00 4.70
466 488 1.208293 GCACCCCTGACTAAAGAGAGG 59.792 57.143 0.00 0.00 0.00 3.69
467 489 2.183679 AGCACCCCTGACTAAAGAGAG 58.816 52.381 0.00 0.00 0.00 3.20
468 490 2.303022 CAAGCACCCCTGACTAAAGAGA 59.697 50.000 0.00 0.00 0.00 3.10
469 491 2.616510 CCAAGCACCCCTGACTAAAGAG 60.617 54.545 0.00 0.00 0.00 2.85
470 492 1.351017 CCAAGCACCCCTGACTAAAGA 59.649 52.381 0.00 0.00 0.00 2.52
471 493 1.351017 TCCAAGCACCCCTGACTAAAG 59.649 52.381 0.00 0.00 0.00 1.85
472 494 1.440618 TCCAAGCACCCCTGACTAAA 58.559 50.000 0.00 0.00 0.00 1.85
473 495 1.073284 GTTCCAAGCACCCCTGACTAA 59.927 52.381 0.00 0.00 0.00 2.24
474 496 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.000 0.00 0.00 0.00 2.59
475 497 1.062488 AGTTCCAAGCACCCCTGACT 61.062 55.000 0.00 0.00 0.00 3.41
476 498 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.000 0.00 0.00 0.00 3.51
477 499 0.555769 AAAGTTCCAAGCACCCCTGA 59.444 50.000 0.00 0.00 0.00 3.86
478 500 2.162681 CTAAAGTTCCAAGCACCCCTG 58.837 52.381 0.00 0.00 0.00 4.45
479 501 1.780919 ACTAAAGTTCCAAGCACCCCT 59.219 47.619 0.00 0.00 0.00 4.79
480 502 2.160205 GACTAAAGTTCCAAGCACCCC 58.840 52.381 0.00 0.00 0.00 4.95
481 503 3.141767 AGACTAAAGTTCCAAGCACCC 57.858 47.619 0.00 0.00 0.00 4.61
482 504 6.628919 TTAAAGACTAAAGTTCCAAGCACC 57.371 37.500 0.00 0.00 0.00 5.01
483 505 8.920509 TTTTTAAAGACTAAAGTTCCAAGCAC 57.079 30.769 0.00 0.00 0.00 4.40
517 539 9.720769 CAAGGGACTATTTTTAGTCTGACTAAA 57.279 33.333 29.65 29.65 42.90 1.85
518 540 8.319146 CCAAGGGACTATTTTTAGTCTGACTAA 58.681 37.037 22.80 22.80 44.35 2.24
519 541 7.676893 TCCAAGGGACTATTTTTAGTCTGACTA 59.323 37.037 13.34 13.34 44.35 2.59
520 542 6.500751 TCCAAGGGACTATTTTTAGTCTGACT 59.499 38.462 15.57 15.57 44.35 3.41
521 543 6.708285 TCCAAGGGACTATTTTTAGTCTGAC 58.292 40.000 11.69 0.00 44.35 3.51
522 544 6.945636 TCCAAGGGACTATTTTTAGTCTGA 57.054 37.500 11.69 1.60 44.35 3.27
523 545 6.768381 GGATCCAAGGGACTATTTTTAGTCTG 59.232 42.308 6.95 4.29 44.35 3.51
524 546 6.447084 TGGATCCAAGGGACTATTTTTAGTCT 59.553 38.462 13.46 0.00 44.35 3.24
525 547 6.659824 TGGATCCAAGGGACTATTTTTAGTC 58.340 40.000 13.46 4.87 44.23 2.59
526 548 6.652205 TGGATCCAAGGGACTATTTTTAGT 57.348 37.500 13.46 0.00 38.49 2.24
527 549 7.573968 CTTGGATCCAAGGGACTATTTTTAG 57.426 40.000 37.26 14.87 46.88 1.85
541 563 1.965414 TAGAGGGTGCTTGGATCCAA 58.035 50.000 25.53 25.53 0.00 3.53
542 564 1.965414 TTAGAGGGTGCTTGGATCCA 58.035 50.000 11.44 11.44 0.00 3.41
543 565 3.584733 ATTTAGAGGGTGCTTGGATCC 57.415 47.619 4.20 4.20 0.00 3.36
544 566 7.454225 ACTTATATTTAGAGGGTGCTTGGATC 58.546 38.462 0.00 0.00 0.00 3.36
545 567 7.293535 AGACTTATATTTAGAGGGTGCTTGGAT 59.706 37.037 0.00 0.00 0.00 3.41
546 568 6.615726 AGACTTATATTTAGAGGGTGCTTGGA 59.384 38.462 0.00 0.00 0.00 3.53
547 569 6.831976 AGACTTATATTTAGAGGGTGCTTGG 58.168 40.000 0.00 0.00 0.00 3.61
548 570 8.616076 CAAAGACTTATATTTAGAGGGTGCTTG 58.384 37.037 0.00 0.00 0.00 4.01
549 571 7.775561 CCAAAGACTTATATTTAGAGGGTGCTT 59.224 37.037 0.00 0.00 0.00 3.91
550 572 7.127339 TCCAAAGACTTATATTTAGAGGGTGCT 59.873 37.037 0.00 0.00 0.00 4.40
551 573 7.280356 TCCAAAGACTTATATTTAGAGGGTGC 58.720 38.462 0.00 0.00 0.00 5.01
552 574 8.705594 TCTCCAAAGACTTATATTTAGAGGGTG 58.294 37.037 0.00 0.00 29.14 4.61
553 575 8.855804 TCTCCAAAGACTTATATTTAGAGGGT 57.144 34.615 0.00 0.00 29.14 4.34
598 620 8.951243 GCAAGTCTTTGGAGAGATTTTACTATT 58.049 33.333 0.00 0.00 34.79 1.73
604 626 6.661304 AATGCAAGTCTTTGGAGAGATTTT 57.339 33.333 0.00 0.00 38.08 1.82
729 770 1.073964 GGATCGACCGATGATGCATG 58.926 55.000 2.46 0.00 34.66 4.06
730 771 0.681175 TGGATCGACCGATGATGCAT 59.319 50.000 9.83 0.00 38.95 3.96
731 772 0.463620 TTGGATCGACCGATGATGCA 59.536 50.000 9.83 0.00 41.58 3.96
732 773 0.861837 GTTGGATCGACCGATGATGC 59.138 55.000 9.83 0.00 42.61 3.91
801 843 3.680072 GATTCGTTGACGCACGCGG 62.680 63.158 16.70 0.00 44.69 6.46
1008 1144 3.071602 TGTTTCTCTGAAGCTAGCTGGTT 59.928 43.478 20.16 1.61 39.32 3.67
1009 1145 2.634940 TGTTTCTCTGAAGCTAGCTGGT 59.365 45.455 20.16 2.53 0.00 4.00
1185 1334 1.833049 CGAGCTCCCTTATCCCGGT 60.833 63.158 8.47 0.00 0.00 5.28
1251 1400 2.674380 CTTCCGGCCTGCTTTGCT 60.674 61.111 0.00 0.00 0.00 3.91
1292 1444 1.344438 CTGGTTGTCTGAGTGGCTGTA 59.656 52.381 0.00 0.00 0.00 2.74
1293 1445 0.107456 CTGGTTGTCTGAGTGGCTGT 59.893 55.000 0.00 0.00 0.00 4.40
1389 1552 2.355363 TCGTTGGTCGTTGCTCGG 60.355 61.111 2.56 0.00 40.80 4.63
1445 1610 3.302347 CTGCCGTCTCTCCACCCAC 62.302 68.421 0.00 0.00 0.00 4.61
1446 1611 2.997315 CTGCCGTCTCTCCACCCA 60.997 66.667 0.00 0.00 0.00 4.51
1447 1612 4.459089 GCTGCCGTCTCTCCACCC 62.459 72.222 0.00 0.00 0.00 4.61
1448 1613 4.803426 CGCTGCCGTCTCTCCACC 62.803 72.222 0.00 0.00 0.00 4.61
1449 1614 4.803426 CCGCTGCCGTCTCTCCAC 62.803 72.222 0.00 0.00 0.00 4.02
1827 1998 1.597937 GCGTTGACTCAACTTTGGCAG 60.598 52.381 17.81 3.95 41.62 4.85
1828 1999 0.380378 GCGTTGACTCAACTTTGGCA 59.620 50.000 17.81 0.00 41.62 4.92
1837 2008 2.970324 GGCAACGGCGTTGACTCA 60.970 61.111 45.66 0.00 46.92 3.41
1875 2046 4.079850 AGCTCAGCTCCGGCACTG 62.080 66.667 15.29 15.29 41.70 3.66
1929 2112 0.835941 ATCCCAGTCAGAGCATGTCC 59.164 55.000 0.00 0.00 0.00 4.02
1930 2113 2.706339 AATCCCAGTCAGAGCATGTC 57.294 50.000 0.00 0.00 0.00 3.06
1931 2114 2.575279 AGAAATCCCAGTCAGAGCATGT 59.425 45.455 0.00 0.00 0.00 3.21
1932 2115 3.278668 AGAAATCCCAGTCAGAGCATG 57.721 47.619 0.00 0.00 0.00 4.06
1933 2116 4.015084 CAAAGAAATCCCAGTCAGAGCAT 58.985 43.478 0.00 0.00 0.00 3.79
2101 2284 5.997746 GCATATTTGTCCATGCTTAGTAGGA 59.002 40.000 0.00 0.00 37.10 2.94
2276 3645 5.069516 GTCTTTTCCCCATACACGTATAGGA 59.930 44.000 3.53 4.18 0.00 2.94
2425 3795 7.884257 TGAATGAAATGATACACAAGCTTTGA 58.116 30.769 13.35 0.00 0.00 2.69
2466 3839 3.935203 GTGTCATGTGTTGTATCCCTCTG 59.065 47.826 0.00 0.00 0.00 3.35
2505 3880 0.179032 TCTGGGCAACATGTTCACGT 60.179 50.000 8.48 0.00 39.74 4.49
2506 3881 0.518636 CTCTGGGCAACATGTTCACG 59.481 55.000 8.48 0.00 39.74 4.35
2507 3882 0.242017 GCTCTGGGCAACATGTTCAC 59.758 55.000 8.48 5.76 41.35 3.18
2508 3883 2.644887 GCTCTGGGCAACATGTTCA 58.355 52.632 8.48 3.10 41.35 3.18
2535 3910 2.786495 TTCGAGCCGAGCATCCCTC 61.786 63.158 0.00 0.00 37.14 4.30
2570 3945 3.131755 GCCTCGTGTATGGTAGGTTTAGT 59.868 47.826 0.00 0.00 0.00 2.24
2606 3981 3.892588 TGGTGGGATTCTTGTTGGTTTAC 59.107 43.478 0.00 0.00 0.00 2.01
2633 4008 3.353836 TCCGCAGTTTTGGCTCGC 61.354 61.111 0.00 0.00 0.00 5.03
2670 4045 2.046023 TGCATGAACAGGGCTCCG 60.046 61.111 0.00 0.00 0.00 4.63
2697 4072 0.961019 GGACAATGGCAGCAACAGAA 59.039 50.000 0.00 0.00 0.00 3.02
2707 4082 2.434185 TGCGACGAGGACAATGGC 60.434 61.111 0.00 0.00 0.00 4.40
2716 5251 3.627732 AATATGTCTAGGTGCGACGAG 57.372 47.619 0.00 0.00 34.17 4.18
2719 5254 3.982058 GTGCTAATATGTCTAGGTGCGAC 59.018 47.826 0.00 0.00 0.00 5.19
2748 5284 3.961408 CCCTAACTCTAGCTAGAAGCCAA 59.039 47.826 23.37 7.63 43.77 4.52
2807 5343 1.668751 TCGCAGACAACCAAGTTTCAC 59.331 47.619 0.00 0.00 0.00 3.18
2880 5417 4.440112 GGAGAAATGGGCGTTCAAAATAGG 60.440 45.833 0.00 0.00 0.00 2.57
2961 6633 2.305009 TGGTGAACATTGTGTGCATCA 58.695 42.857 0.00 0.00 44.45 3.07
2968 6640 4.885413 ACAAATGGATGGTGAACATTGTG 58.115 39.130 0.00 0.00 40.72 3.33
2969 6641 4.834496 AGACAAATGGATGGTGAACATTGT 59.166 37.500 0.00 0.00 40.72 2.71
3006 6678 4.205065 TCCCACCAATCAAATGCATTTC 57.795 40.909 21.70 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.