Multiple sequence alignment - TraesCS2A01G043400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G043400 chr2A 100.000 3646 0 0 1 3646 17299138 17302783 0.000000e+00 6734
1 TraesCS2A01G043400 chr2A 91.444 1800 98 18 262 2044 20364764 20366524 0.000000e+00 2420
2 TraesCS2A01G043400 chr2A 90.401 1073 63 14 2162 3199 20366556 20367623 0.000000e+00 1375
3 TraesCS2A01G043400 chr2A 90.213 235 18 3 5 238 20363480 20363710 5.920000e-78 302
4 TraesCS2A01G043400 chrUn 91.664 3143 138 47 1 3077 266172170 266169086 0.000000e+00 4239
5 TraesCS2A01G043400 chrUn 90.931 2922 167 34 330 3199 16444887 16442012 0.000000e+00 3838
6 TraesCS2A01G043400 chrUn 92.256 2686 159 30 330 2997 233477867 233475213 0.000000e+00 3762
7 TraesCS2A01G043400 chrUn 91.498 2517 136 40 708 3176 272511452 272513938 0.000000e+00 3391
8 TraesCS2A01G043400 chrUn 91.498 2517 136 40 708 3176 288700577 288703063 0.000000e+00 3391
9 TraesCS2A01G043400 chrUn 90.669 2004 108 33 1239 3199 344031471 344033438 0.000000e+00 2591
10 TraesCS2A01G043400 chrUn 90.723 1757 109 18 330 2064 366814639 366812915 0.000000e+00 2292
11 TraesCS2A01G043400 chrUn 85.829 1122 82 21 1 1090 375770750 375769674 0.000000e+00 1120
12 TraesCS2A01G043400 chrUn 95.593 590 13 2 3068 3646 24179904 24179317 0.000000e+00 933
13 TraesCS2A01G043400 chrUn 95.593 590 12 3 3068 3646 434209143 434209729 0.000000e+00 933
14 TraesCS2A01G043400 chrUn 89.331 628 35 11 2601 3199 16547539 16548163 0.000000e+00 760
15 TraesCS2A01G043400 chrUn 89.331 628 35 11 2601 3199 203045617 203046241 0.000000e+00 760
16 TraesCS2A01G043400 chrUn 97.820 367 6 1 3280 3646 397081912 397081548 1.850000e-177 632
17 TraesCS2A01G043400 chrUn 93.367 392 24 2 3256 3646 233473787 233473397 2.440000e-161 579
18 TraesCS2A01G043400 chrUn 92.965 398 23 2 3252 3646 16660062 16660457 3.160000e-160 575
19 TraesCS2A01G043400 chrUn 92.714 398 25 2 3252 3646 16614898 16615294 4.080000e-159 571
20 TraesCS2A01G043400 chrUn 92.231 399 26 3 3252 3646 16441045 16440648 8.840000e-156 560
21 TraesCS2A01G043400 chrUn 92.231 399 25 3 3252 3646 203047212 203047608 8.840000e-156 560
22 TraesCS2A01G043400 chrUn 90.816 294 25 1 330 621 16611362 16611655 3.410000e-105 392
23 TraesCS2A01G043400 chrUn 90.136 294 27 1 330 621 16656976 16657269 7.390000e-102 381
24 TraesCS2A01G043400 chrUn 89.568 278 26 2 336 611 272511175 272511451 2.080000e-92 350
25 TraesCS2A01G043400 chrUn 89.568 278 26 2 336 611 288700300 288700576 2.080000e-92 350
26 TraesCS2A01G043400 chr2D 91.441 3143 137 50 1 3077 15263477 15266553 0.000000e+00 4193
27 TraesCS2A01G043400 chr2D 93.085 2661 90 36 458 3077 15228235 15230842 0.000000e+00 3808
28 TraesCS2A01G043400 chr2D 89.860 2505 125 50 1 2442 15248569 15251007 0.000000e+00 3099
29 TraesCS2A01G043400 chr2D 90.950 1116 54 9 2114 3199 19848234 19847136 0.000000e+00 1458
30 TraesCS2A01G043400 chr2D 95.254 590 17 1 3068 3646 15276799 15277388 0.000000e+00 924
31 TraesCS2A01G043400 chr2D 91.246 594 44 3 262 848 19849952 19849360 0.000000e+00 802
32 TraesCS2A01G043400 chr2D 89.159 452 42 4 1 451 15218079 15218524 1.140000e-154 556
33 TraesCS2A01G043400 chr2D 88.186 237 22 3 1 236 15330272 15330503 9.970000e-71 278
34 TraesCS2A01G043400 chr6B 91.119 2387 163 24 726 3098 549028927 549031278 0.000000e+00 3188
35 TraesCS2A01G043400 chr7B 89.621 2399 192 28 726 3098 70339481 70341848 0.000000e+00 2998
36 TraesCS2A01G043400 chr2B 92.382 1969 96 30 1140 3097 27356054 27357979 0.000000e+00 2756
37 TraesCS2A01G043400 chr2B 92.280 1969 98 28 1140 3097 27287747 27289672 0.000000e+00 2745
38 TraesCS2A01G043400 chr2B 92.179 1969 100 28 1140 3097 27250153 27252078 0.000000e+00 2734
39 TraesCS2A01G043400 chr2B 93.288 1773 100 11 1140 2904 27407100 27408861 0.000000e+00 2597
40 TraesCS2A01G043400 chr2B 84.647 482 52 7 1 479 27352831 27353293 9.220000e-126 460
41 TraesCS2A01G043400 chr2B 84.407 481 54 6 1 479 27403850 27404311 1.540000e-123 453
42 TraesCS2A01G043400 chr2B 95.210 167 6 1 2933 3097 27408857 27409023 2.790000e-66 263


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G043400 chr2A 17299138 17302783 3645 False 6734.000000 6734 100.000000 1 3646 1 chr2A.!!$F1 3645
1 TraesCS2A01G043400 chr2A 20363480 20367623 4143 False 1365.666667 2420 90.686000 5 3199 3 chr2A.!!$F2 3194
2 TraesCS2A01G043400 chrUn 266169086 266172170 3084 True 4239.000000 4239 91.664000 1 3077 1 chrUn.!!$R2 3076
3 TraesCS2A01G043400 chrUn 344031471 344033438 1967 False 2591.000000 2591 90.669000 1239 3199 1 chrUn.!!$F2 1960
4 TraesCS2A01G043400 chrUn 366812915 366814639 1724 True 2292.000000 2292 90.723000 330 2064 1 chrUn.!!$R3 1734
5 TraesCS2A01G043400 chrUn 16440648 16444887 4239 True 2199.000000 3838 91.581000 330 3646 2 chrUn.!!$R6 3316
6 TraesCS2A01G043400 chrUn 233473397 233477867 4470 True 2170.500000 3762 92.811500 330 3646 2 chrUn.!!$R7 3316
7 TraesCS2A01G043400 chrUn 272511175 272513938 2763 False 1870.500000 3391 90.533000 336 3176 2 chrUn.!!$F7 2840
8 TraesCS2A01G043400 chrUn 288700300 288703063 2763 False 1870.500000 3391 90.533000 336 3176 2 chrUn.!!$F8 2840
9 TraesCS2A01G043400 chrUn 375769674 375770750 1076 True 1120.000000 1120 85.829000 1 1090 1 chrUn.!!$R4 1089
10 TraesCS2A01G043400 chrUn 24179317 24179904 587 True 933.000000 933 95.593000 3068 3646 1 chrUn.!!$R1 578
11 TraesCS2A01G043400 chrUn 434209143 434209729 586 False 933.000000 933 95.593000 3068 3646 1 chrUn.!!$F3 578
12 TraesCS2A01G043400 chrUn 16547539 16548163 624 False 760.000000 760 89.331000 2601 3199 1 chrUn.!!$F1 598
13 TraesCS2A01G043400 chrUn 203045617 203047608 1991 False 660.000000 760 90.781000 2601 3646 2 chrUn.!!$F6 1045
14 TraesCS2A01G043400 chrUn 16611362 16615294 3932 False 481.500000 571 91.765000 330 3646 2 chrUn.!!$F4 3316
15 TraesCS2A01G043400 chrUn 16656976 16660457 3481 False 478.000000 575 91.550500 330 3646 2 chrUn.!!$F5 3316
16 TraesCS2A01G043400 chr2D 15263477 15266553 3076 False 4193.000000 4193 91.441000 1 3077 1 chr2D.!!$F4 3076
17 TraesCS2A01G043400 chr2D 15228235 15230842 2607 False 3808.000000 3808 93.085000 458 3077 1 chr2D.!!$F2 2619
18 TraesCS2A01G043400 chr2D 15248569 15251007 2438 False 3099.000000 3099 89.860000 1 2442 1 chr2D.!!$F3 2441
19 TraesCS2A01G043400 chr2D 19847136 19849952 2816 True 1130.000000 1458 91.098000 262 3199 2 chr2D.!!$R1 2937
20 TraesCS2A01G043400 chr2D 15276799 15277388 589 False 924.000000 924 95.254000 3068 3646 1 chr2D.!!$F5 578
21 TraesCS2A01G043400 chr6B 549028927 549031278 2351 False 3188.000000 3188 91.119000 726 3098 1 chr6B.!!$F1 2372
22 TraesCS2A01G043400 chr7B 70339481 70341848 2367 False 2998.000000 2998 89.621000 726 3098 1 chr7B.!!$F1 2372
23 TraesCS2A01G043400 chr2B 27287747 27289672 1925 False 2745.000000 2745 92.280000 1140 3097 1 chr2B.!!$F2 1957
24 TraesCS2A01G043400 chr2B 27250153 27252078 1925 False 2734.000000 2734 92.179000 1140 3097 1 chr2B.!!$F1 1957
25 TraesCS2A01G043400 chr2B 27352831 27357979 5148 False 1608.000000 2756 88.514500 1 3097 2 chr2B.!!$F3 3096
26 TraesCS2A01G043400 chr2B 27403850 27409023 5173 False 1104.333333 2597 90.968333 1 3097 3 chr2B.!!$F4 3096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 206 0.107081 GAGGAGAGAGGACCGATCGA 59.893 60.000 18.66 0.0 0.0 3.59 F
435 1495 0.247145 CGCCGCATAGTGTCGAAAAC 60.247 55.000 0.00 0.0 0.0 2.43 F
1113 4760 1.134340 TCCTCCTCTCGTCTAGTCTGC 60.134 57.143 0.00 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1143 4869 0.106335 CGAGCCTCAGATTCATGCCT 59.894 55.0 0.00 0.0 0.0 4.75 R
1375 5109 0.529773 TGGCCGCGTAGATGATGAAC 60.530 55.0 4.92 0.0 0.0 3.18 R
3106 6964 0.941542 GTTAACAAGGCAGCGTCACA 59.058 50.0 0.00 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.612115 CCTCCAGGCCACCTCCTT 60.612 66.667 5.01 0.00 33.25 3.36
64 65 3.782244 CTGTCGCAGCGCTTGTCC 61.782 66.667 7.50 0.00 0.00 4.02
77 78 1.001860 GCTTGTCCTCTCTCTGCAAGT 59.998 52.381 0.00 0.00 38.84 3.16
83 84 2.564947 TCCTCTCTCTGCAAGTTCCTTC 59.435 50.000 0.00 0.00 33.76 3.46
96 97 0.178915 TTCCTTCGGGGAGAGGACAA 60.179 55.000 0.00 0.00 46.01 3.18
98 99 0.179000 CCTTCGGGGAGAGGACAATG 59.821 60.000 0.00 0.00 37.23 2.82
106 107 2.370189 GGGAGAGGACAATGATGTAGGG 59.630 54.545 0.00 0.00 40.74 3.53
117 118 5.044919 ACAATGATGTAGGGGAAAGTCATGA 60.045 40.000 0.00 0.00 38.24 3.07
134 135 0.895100 TGAGGGCTGTTGCAATGGTC 60.895 55.000 0.59 0.00 41.91 4.02
202 204 0.183971 TGGAGGAGAGAGGACCGATC 59.816 60.000 0.00 0.00 0.00 3.69
203 205 0.887387 GGAGGAGAGAGGACCGATCG 60.887 65.000 8.51 8.51 0.00 3.69
204 206 0.107081 GAGGAGAGAGGACCGATCGA 59.893 60.000 18.66 0.00 0.00 3.59
205 207 0.768622 AGGAGAGAGGACCGATCGAT 59.231 55.000 18.66 0.00 0.00 3.59
212 214 5.364778 AGAGAGGACCGATCGATATAGATG 58.635 45.833 18.66 0.00 0.00 2.90
219 221 5.752650 ACCGATCGATATAGATGGGACTTA 58.247 41.667 26.23 0.00 45.67 2.24
287 1319 4.328712 CGGAAAACAAGAGTTGGGTTTTTG 59.671 41.667 0.00 0.00 42.79 2.44
290 1323 6.874664 GGAAAACAAGAGTTGGGTTTTTGTAA 59.125 34.615 0.00 0.00 42.79 2.41
326 1360 0.532115 GAGGGACGTTAGGGCGTTTA 59.468 55.000 0.00 0.00 45.79 2.01
364 1398 5.596845 GAGGTAGCCAAATGAAACAAAACA 58.403 37.500 0.00 0.00 0.00 2.83
418 1452 6.985059 GGATAATTGTATATTACTCCCTCCGC 59.015 42.308 0.00 0.00 0.00 5.54
435 1495 0.247145 CGCCGCATAGTGTCGAAAAC 60.247 55.000 0.00 0.00 0.00 2.43
469 1533 3.342926 AGGATCAAGGGAGTAGAGCAT 57.657 47.619 0.00 0.00 0.00 3.79
545 3764 3.787394 GACTGGGTCGGTCTTGGA 58.213 61.111 0.05 0.00 36.86 3.53
593 3812 1.895231 GGGTTGGTGTTGGTCCGTC 60.895 63.158 0.00 0.00 0.00 4.79
651 4241 3.438360 CGTACGACTGTATGGGGTTTAC 58.562 50.000 10.44 0.00 34.54 2.01
821 4429 6.063404 TCAAATCAAACCGTTTAACCTACCT 58.937 36.000 0.00 0.00 0.00 3.08
839 4449 5.932303 CCTACCTTTAACCATATCCACATCG 59.068 44.000 0.00 0.00 0.00 3.84
915 4525 2.600173 CACCCACGCCCCAAACAT 60.600 61.111 0.00 0.00 0.00 2.71
948 4558 3.243336 CCTTCCTCAAGTCGTTAGTTCG 58.757 50.000 0.00 0.00 0.00 3.95
980 4598 2.046700 TTGTGTTCCCGGCGATCC 60.047 61.111 9.30 0.00 0.00 3.36
1113 4760 1.134340 TCCTCCTCTCGTCTAGTCTGC 60.134 57.143 0.00 0.00 0.00 4.26
1127 4774 8.880750 TCGTCTAGTCTGCATGTATACATATAC 58.119 37.037 17.86 12.75 39.14 1.47
1143 4869 5.736813 ACATATACGAAAGGTGGTTGCTAA 58.263 37.500 0.00 0.00 0.00 3.09
1173 4899 6.092670 TGAATCTGAGGCTCGTTTTCTAATTG 59.907 38.462 10.42 0.00 0.00 2.32
1174 4900 4.894784 TCTGAGGCTCGTTTTCTAATTGT 58.105 39.130 10.42 0.00 0.00 2.71
1175 4901 6.032956 TCTGAGGCTCGTTTTCTAATTGTA 57.967 37.500 10.42 0.00 0.00 2.41
1176 4902 5.867716 TCTGAGGCTCGTTTTCTAATTGTAC 59.132 40.000 10.42 0.00 0.00 2.90
1375 5109 0.035881 AGGGCGCCTACATCATCATG 59.964 55.000 28.56 0.00 35.92 3.07
1422 5157 1.006337 GGGTACGTACGTGCAACCA 60.006 57.895 32.30 10.37 32.33 3.67
1452 5201 1.338136 CCCTCATCCGGCCTACTGTT 61.338 60.000 0.00 0.00 0.00 3.16
1504 5256 2.516930 CCTGCATGCCCTAACCCG 60.517 66.667 16.68 0.00 0.00 5.28
1506 5258 1.819632 CTGCATGCCCTAACCCGTC 60.820 63.158 16.68 0.00 0.00 4.79
1515 5267 1.451387 CTAACCCGTCCCATGTGCC 60.451 63.158 0.00 0.00 0.00 5.01
1554 5306 1.141019 GTGGAAGATGCTCGGCGTA 59.859 57.895 6.85 0.00 0.00 4.42
1735 5494 4.665833 CAACTTATGGATAGTCGACCCA 57.334 45.455 13.01 13.26 0.00 4.51
2182 5977 5.164119 CGCTTTTACCAACTTACGAGTGTAG 60.164 44.000 0.00 0.00 35.91 2.74
2409 6209 6.575162 ATTGGAAATAAGAAGTCGCAAACT 57.425 33.333 0.00 0.00 41.10 2.66
2606 6406 2.752354 CACTGTCCTCACCAAAAACACA 59.248 45.455 0.00 0.00 0.00 3.72
2639 6439 2.398128 ACGTCTCCGTCACCGTTGAC 62.398 60.000 2.51 2.51 46.28 3.18
2672 6474 2.095212 GCTTCGTTTTTAGCCCTGAAGG 60.095 50.000 2.43 0.00 34.78 3.46
2782 6592 6.442952 CCTTTAATTTCGTGAACCATTGTCA 58.557 36.000 0.00 0.00 0.00 3.58
2943 6766 1.443194 CAGCGTGTGATGGCTTTGC 60.443 57.895 0.00 0.00 37.41 3.68
3106 6964 9.945904 CAGACTTAACCTAATTACTCTTTTCCT 57.054 33.333 0.00 0.00 0.00 3.36
3124 6982 1.225855 CTGTGACGCTGCCTTGTTAA 58.774 50.000 0.00 0.00 0.00 2.01
3170 7028 3.054875 TCTGCAGCTTGGTCAAGTATGAT 60.055 43.478 9.47 0.00 40.45 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.035820 GAGGCACGGGAATGGTGTTA 60.036 55.000 0.00 0.00 37.70 2.41
83 84 0.833287 ACATCATTGTCCTCTCCCCG 59.167 55.000 0.00 0.00 0.00 5.73
96 97 4.103785 CCTCATGACTTTCCCCTACATCAT 59.896 45.833 0.00 0.00 0.00 2.45
98 99 3.181450 CCCTCATGACTTTCCCCTACATC 60.181 52.174 0.00 0.00 0.00 3.06
106 107 1.815003 CAACAGCCCTCATGACTTTCC 59.185 52.381 0.00 0.00 0.00 3.13
117 118 0.698238 TAGACCATTGCAACAGCCCT 59.302 50.000 0.00 0.00 0.00 5.19
134 135 4.489810 CCTATAACCAGCGAGCATTCTAG 58.510 47.826 0.00 0.00 0.00 2.43
184 186 0.887387 CGATCGGTCCTCTCTCCTCC 60.887 65.000 7.38 0.00 0.00 4.30
202 204 5.163602 GCTCCACTAAGTCCCATCTATATCG 60.164 48.000 0.00 0.00 0.00 2.92
203 205 5.163602 CGCTCCACTAAGTCCCATCTATATC 60.164 48.000 0.00 0.00 0.00 1.63
204 206 4.707448 CGCTCCACTAAGTCCCATCTATAT 59.293 45.833 0.00 0.00 0.00 0.86
205 207 4.079970 CGCTCCACTAAGTCCCATCTATA 58.920 47.826 0.00 0.00 0.00 1.31
212 214 2.280628 CAAATCGCTCCACTAAGTCCC 58.719 52.381 0.00 0.00 0.00 4.46
219 221 3.008049 ACCTAGAAACAAATCGCTCCACT 59.992 43.478 0.00 0.00 0.00 4.00
268 1300 8.856153 ATTTTACAAAAACCCAACTCTTGTTT 57.144 26.923 0.00 0.00 33.52 2.83
290 1323 7.722363 ACGTCCCTCTTCAACAATTTTTATTT 58.278 30.769 0.00 0.00 0.00 1.40
306 1339 2.036890 ACGCCCTAACGTCCCTCT 59.963 61.111 0.00 0.00 44.43 3.69
326 1360 2.511452 CCTCGCTCCCCCATCGATT 61.511 63.158 0.00 0.00 0.00 3.34
364 1398 7.709149 ACTATTAAAGTGGAGTACGTAGGTT 57.291 36.000 0.00 0.00 36.93 3.50
393 1427 6.985059 GCGGAGGGAGTAATATACAATTATCC 59.015 42.308 0.00 0.00 0.00 2.59
435 1495 8.239038 TCCCTTGATCCTATAATATAAGAGCG 57.761 38.462 0.00 0.00 0.00 5.03
449 1509 2.856760 TGCTCTACTCCCTTGATCCT 57.143 50.000 0.00 0.00 0.00 3.24
469 1533 1.891919 GGCCGTGAAGTGCTGTTGA 60.892 57.895 0.00 0.00 0.00 3.18
545 3764 0.258774 ACCCAAGGACACTGCAAAGT 59.741 50.000 0.00 0.00 0.00 2.66
593 3812 2.620112 CCCTGAGCGCCAAACTGTG 61.620 63.158 2.29 0.00 0.00 3.66
651 4241 3.629398 ACGTAACAATACTCCTACTCGGG 59.371 47.826 0.00 0.00 0.00 5.14
821 4429 5.576563 ATCCCGATGTGGATATGGTTAAA 57.423 39.130 0.00 0.00 43.42 1.52
839 4449 4.041815 GTCTCCTTCCCCAAGTTATATCCC 59.958 50.000 0.00 0.00 0.00 3.85
875 4485 7.447853 GGTGGCCGAGCTTATATAGTATATAGT 59.552 40.741 9.34 0.00 0.00 2.12
876 4486 7.094291 GGGTGGCCGAGCTTATATAGTATATAG 60.094 44.444 9.34 6.26 0.00 1.31
877 4487 6.718454 GGGTGGCCGAGCTTATATAGTATATA 59.282 42.308 5.87 5.87 0.00 0.86
878 4488 5.539193 GGGTGGCCGAGCTTATATAGTATAT 59.461 44.000 7.78 7.78 0.00 0.86
879 4489 4.891756 GGGTGGCCGAGCTTATATAGTATA 59.108 45.833 0.00 0.00 0.00 1.47
880 4490 3.705072 GGGTGGCCGAGCTTATATAGTAT 59.295 47.826 0.00 0.00 0.00 2.12
915 4525 4.104102 ACTTGAGGAAGGTTGGTTGTGATA 59.896 41.667 0.00 0.00 32.95 2.15
980 4598 3.930634 TGATGCTGACCTAGATCGATG 57.069 47.619 0.54 0.00 0.00 3.84
993 4615 1.434696 GGCGGAAACCATGATGCTG 59.565 57.895 0.00 0.00 0.00 4.41
1113 4760 8.708742 CAACCACCTTTCGTATATGTATACATG 58.291 37.037 25.48 10.92 38.72 3.21
1127 4774 0.521735 GCCTTAGCAACCACCTTTCG 59.478 55.000 0.00 0.00 39.53 3.46
1143 4869 0.106335 CGAGCCTCAGATTCATGCCT 59.894 55.000 0.00 0.00 0.00 4.75
1375 5109 0.529773 TGGCCGCGTAGATGATGAAC 60.530 55.000 4.92 0.00 0.00 3.18
1422 5157 1.376649 GGATGAGGGGGCATTAGGAT 58.623 55.000 0.00 0.00 0.00 3.24
1452 5201 6.867816 TGTATAGAAACTAACGCCGAAAAGAA 59.132 34.615 0.00 0.00 0.00 2.52
1504 5256 2.034687 AGCACAGGCACATGGGAC 59.965 61.111 0.00 0.00 44.61 4.46
1506 5258 2.044555 CAGAGCACAGGCACATGGG 61.045 63.158 0.00 0.00 44.61 4.00
1515 5267 1.939597 CACACACAGCAGAGCACAG 59.060 57.895 0.00 0.00 0.00 3.66
1735 5494 5.873164 AGTTAAAGCGGTTATCAAAGATCGT 59.127 36.000 0.00 0.00 0.00 3.73
1796 5573 3.118408 ACGCATCATTACCACACCATACT 60.118 43.478 0.00 0.00 0.00 2.12
1904 5686 7.697352 TTCAAGCATAATCAACAACAAACAG 57.303 32.000 0.00 0.00 0.00 3.16
2409 6209 4.824479 TCTTGATTGTATGTCTGGCTGA 57.176 40.909 0.00 0.00 0.00 4.26
2606 6406 1.666872 GACGTTGCCGCTGGTAACT 60.667 57.895 19.80 11.11 44.19 2.24
2639 6439 7.280769 GCTAAAAACGAAGCCAAGTTTATTTG 58.719 34.615 0.00 2.99 39.36 2.32
2672 6474 8.658499 ATCATCCGGTATTAACTACTCAAAAC 57.342 34.615 0.00 0.00 0.00 2.43
2782 6592 3.207778 GCACTAGTAGTCTCGGACAGAT 58.792 50.000 0.00 0.00 34.60 2.90
3106 6964 0.941542 GTTAACAAGGCAGCGTCACA 59.058 50.000 0.00 0.00 0.00 3.58
3124 6982 0.667487 CTCGTTGCCTGTCGATGTGT 60.667 55.000 0.00 0.00 35.57 3.72
3170 7028 1.552337 CTCTAGCAGGGACTCAAAGCA 59.448 52.381 0.00 0.00 34.60 3.91
3477 8909 1.002792 GGGCACTTGTTTGAGTTCGAC 60.003 52.381 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.