Multiple sequence alignment - TraesCS2A01G043300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G043300 chr2A 100.000 2456 0 0 1 2456 17298642 17296187 0.000000e+00 4536.0
1 TraesCS2A01G043300 chr2A 98.329 718 12 0 1739 2456 17277239 17276522 0.000000e+00 1260.0
2 TraesCS2A01G043300 chr2A 98.050 718 14 0 1739 2456 16926591 16925874 0.000000e+00 1249.0
3 TraesCS2A01G043300 chr6B 90.513 1423 122 10 320 1738 716020860 716019447 0.000000e+00 1868.0
4 TraesCS2A01G043300 chr7A 90.372 1423 104 10 320 1738 36624986 36626379 0.000000e+00 1838.0
5 TraesCS2A01G043300 chrUn 98.329 718 12 0 1739 2456 349816603 349817320 0.000000e+00 1260.0
6 TraesCS2A01G043300 chrUn 98.189 718 13 0 1739 2456 349835581 349834864 0.000000e+00 1254.0
7 TraesCS2A01G043300 chrUn 100.000 31 0 0 205 235 121525100 121525070 9.490000e-05 58.4
8 TraesCS2A01G043300 chrUn 100.000 31 0 0 205 235 169758537 169758507 9.490000e-05 58.4
9 TraesCS2A01G043300 chrUn 100.000 31 0 0 205 235 170767664 170767694 9.490000e-05 58.4
10 TraesCS2A01G043300 chrUn 100.000 31 0 0 205 235 237171043 237171013 9.490000e-05 58.4
11 TraesCS2A01G043300 chrUn 100.000 31 0 0 205 235 396399263 396399293 9.490000e-05 58.4
12 TraesCS2A01G043300 chrUn 100.000 31 0 0 205 235 411761926 411761956 9.490000e-05 58.4
13 TraesCS2A01G043300 chrUn 100.000 31 0 0 205 235 428103993 428103963 9.490000e-05 58.4
14 TraesCS2A01G043300 chr6A 98.053 719 13 1 1739 2456 34350405 34349687 0.000000e+00 1249.0
15 TraesCS2A01G043300 chr6A 97.914 719 14 1 1739 2456 34357230 34356512 0.000000e+00 1243.0
16 TraesCS2A01G043300 chr6A 97.772 718 16 0 1739 2456 607613786 607613069 0.000000e+00 1238.0
17 TraesCS2A01G043300 chr7B 97.517 725 16 2 1734 2456 506650285 506649561 0.000000e+00 1238.0
18 TraesCS2A01G043300 chr2B 96.739 736 22 2 1723 2456 374194031 374194766 0.000000e+00 1225.0
19 TraesCS2A01G043300 chr2B 89.328 253 25 1 70 320 27089734 27089482 1.420000e-82 316.0
20 TraesCS2A01G043300 chr2D 89.195 981 93 11 764 1738 81836441 81837414 0.000000e+00 1212.0
21 TraesCS2A01G043300 chr2D 92.268 776 59 1 963 1738 222645769 222644995 0.000000e+00 1099.0
22 TraesCS2A01G043300 chr2D 92.035 565 43 2 366 929 222646334 222645771 0.000000e+00 793.0
23 TraesCS2A01G043300 chr2D 83.267 251 26 4 70 320 15197621 15197387 1.480000e-52 217.0
24 TraesCS2A01G043300 chr7D 90.084 837 57 16 904 1738 83321585 83322397 0.000000e+00 1062.0
25 TraesCS2A01G043300 chr1D 91.903 741 57 3 999 1738 452252914 452252176 0.000000e+00 1033.0
26 TraesCS2A01G043300 chr5D 92.033 728 45 4 1003 1730 510980101 510979387 0.000000e+00 1011.0
27 TraesCS2A01G043300 chr5D 92.437 714 42 10 1031 1738 9073902 9074609 0.000000e+00 1009.0
28 TraesCS2A01G043300 chr5D 88.252 698 70 8 320 1008 510994772 510994078 0.000000e+00 824.0
29 TraesCS2A01G043300 chr3A 88.138 843 69 15 901 1738 40842436 40843252 0.000000e+00 974.0
30 TraesCS2A01G043300 chr3B 81.250 128 21 3 160 285 731126981 731126855 1.550000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G043300 chr2A 17296187 17298642 2455 True 4536 4536 100.0000 1 2456 1 chr2A.!!$R3 2455
1 TraesCS2A01G043300 chr2A 17276522 17277239 717 True 1260 1260 98.3290 1739 2456 1 chr2A.!!$R2 717
2 TraesCS2A01G043300 chr2A 16925874 16926591 717 True 1249 1249 98.0500 1739 2456 1 chr2A.!!$R1 717
3 TraesCS2A01G043300 chr6B 716019447 716020860 1413 True 1868 1868 90.5130 320 1738 1 chr6B.!!$R1 1418
4 TraesCS2A01G043300 chr7A 36624986 36626379 1393 False 1838 1838 90.3720 320 1738 1 chr7A.!!$F1 1418
5 TraesCS2A01G043300 chrUn 349816603 349817320 717 False 1260 1260 98.3290 1739 2456 1 chrUn.!!$F2 717
6 TraesCS2A01G043300 chrUn 349834864 349835581 717 True 1254 1254 98.1890 1739 2456 1 chrUn.!!$R4 717
7 TraesCS2A01G043300 chr6A 34349687 34350405 718 True 1249 1249 98.0530 1739 2456 1 chr6A.!!$R1 717
8 TraesCS2A01G043300 chr6A 34356512 34357230 718 True 1243 1243 97.9140 1739 2456 1 chr6A.!!$R2 717
9 TraesCS2A01G043300 chr6A 607613069 607613786 717 True 1238 1238 97.7720 1739 2456 1 chr6A.!!$R3 717
10 TraesCS2A01G043300 chr7B 506649561 506650285 724 True 1238 1238 97.5170 1734 2456 1 chr7B.!!$R1 722
11 TraesCS2A01G043300 chr2B 374194031 374194766 735 False 1225 1225 96.7390 1723 2456 1 chr2B.!!$F1 733
12 TraesCS2A01G043300 chr2D 81836441 81837414 973 False 1212 1212 89.1950 764 1738 1 chr2D.!!$F1 974
13 TraesCS2A01G043300 chr2D 222644995 222646334 1339 True 946 1099 92.1515 366 1738 2 chr2D.!!$R2 1372
14 TraesCS2A01G043300 chr7D 83321585 83322397 812 False 1062 1062 90.0840 904 1738 1 chr7D.!!$F1 834
15 TraesCS2A01G043300 chr1D 452252176 452252914 738 True 1033 1033 91.9030 999 1738 1 chr1D.!!$R1 739
16 TraesCS2A01G043300 chr5D 510979387 510980101 714 True 1011 1011 92.0330 1003 1730 1 chr5D.!!$R1 727
17 TraesCS2A01G043300 chr5D 9073902 9074609 707 False 1009 1009 92.4370 1031 1738 1 chr5D.!!$F1 707
18 TraesCS2A01G043300 chr5D 510994078 510994772 694 True 824 824 88.2520 320 1008 1 chr5D.!!$R2 688
19 TraesCS2A01G043300 chr3A 40842436 40843252 816 False 974 974 88.1380 901 1738 1 chr3A.!!$F1 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.030195 TCCTATCATGTCTGGGCCCA 60.030 55.0 26.67 26.67 0.0 5.36 F
157 158 0.039035 TGGGCCCAACCTGTCATAAC 59.961 55.0 26.33 0.00 39.1 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1090 1107 1.162181 CCGACGGCTGCATCATTGAT 61.162 55.0 0.0 0.0 0.0 2.57 R
2004 2037 1.200519 TCGGGTGCTAAGCTAATGGT 58.799 50.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.547279 AATACAATATAAATTCCTCCAATCCCC 57.453 33.333 0.00 0.00 0.00 4.81
30 31 7.179460 ACAATATAAATTCCTCCAATCCCCT 57.821 36.000 0.00 0.00 0.00 4.79
31 32 7.241628 ACAATATAAATTCCTCCAATCCCCTC 58.758 38.462 0.00 0.00 0.00 4.30
32 33 7.075526 ACAATATAAATTCCTCCAATCCCCTCT 59.924 37.037 0.00 0.00 0.00 3.69
33 34 3.961484 AAATTCCTCCAATCCCCTCTC 57.039 47.619 0.00 0.00 0.00 3.20
34 35 2.906169 ATTCCTCCAATCCCCTCTCT 57.094 50.000 0.00 0.00 0.00 3.10
35 36 4.302004 AATTCCTCCAATCCCCTCTCTA 57.698 45.455 0.00 0.00 0.00 2.43
36 37 4.516953 ATTCCTCCAATCCCCTCTCTAT 57.483 45.455 0.00 0.00 0.00 1.98
37 38 4.302004 TTCCTCCAATCCCCTCTCTATT 57.698 45.455 0.00 0.00 0.00 1.73
38 39 3.863086 TCCTCCAATCCCCTCTCTATTC 58.137 50.000 0.00 0.00 0.00 1.75
39 40 3.472848 TCCTCCAATCCCCTCTCTATTCT 59.527 47.826 0.00 0.00 0.00 2.40
40 41 4.077745 TCCTCCAATCCCCTCTCTATTCTT 60.078 45.833 0.00 0.00 0.00 2.52
41 42 4.285775 CCTCCAATCCCCTCTCTATTCTTC 59.714 50.000 0.00 0.00 0.00 2.87
42 43 4.235372 TCCAATCCCCTCTCTATTCTTCC 58.765 47.826 0.00 0.00 0.00 3.46
43 44 3.976654 CCAATCCCCTCTCTATTCTTCCA 59.023 47.826 0.00 0.00 0.00 3.53
44 45 4.202409 CCAATCCCCTCTCTATTCTTCCAC 60.202 50.000 0.00 0.00 0.00 4.02
45 46 3.776731 TCCCCTCTCTATTCTTCCACA 57.223 47.619 0.00 0.00 0.00 4.17
46 47 4.286813 TCCCCTCTCTATTCTTCCACAT 57.713 45.455 0.00 0.00 0.00 3.21
47 48 3.969976 TCCCCTCTCTATTCTTCCACATG 59.030 47.826 0.00 0.00 0.00 3.21
48 49 3.072184 CCCCTCTCTATTCTTCCACATGG 59.928 52.174 0.00 0.00 0.00 3.66
49 50 3.713764 CCCTCTCTATTCTTCCACATGGT 59.286 47.826 0.00 0.00 36.34 3.55
50 51 4.901849 CCCTCTCTATTCTTCCACATGGTA 59.098 45.833 0.00 0.00 36.34 3.25
51 52 5.545723 CCCTCTCTATTCTTCCACATGGTAT 59.454 44.000 0.00 0.00 36.34 2.73
52 53 6.295575 CCCTCTCTATTCTTCCACATGGTATC 60.296 46.154 0.00 0.00 36.34 2.24
53 54 6.332735 TCTCTATTCTTCCACATGGTATCG 57.667 41.667 0.00 0.00 36.34 2.92
54 55 5.243954 TCTCTATTCTTCCACATGGTATCGG 59.756 44.000 0.00 0.00 36.34 4.18
55 56 2.325583 TTCTTCCACATGGTATCGGC 57.674 50.000 0.00 0.00 36.34 5.54
56 57 0.468226 TCTTCCACATGGTATCGGCC 59.532 55.000 0.00 0.00 36.34 6.13
57 58 0.469917 CTTCCACATGGTATCGGCCT 59.530 55.000 0.00 0.00 36.34 5.19
58 59 0.916086 TTCCACATGGTATCGGCCTT 59.084 50.000 0.00 0.00 36.34 4.35
59 60 1.796017 TCCACATGGTATCGGCCTTA 58.204 50.000 0.00 0.00 36.34 2.69
60 61 1.414919 TCCACATGGTATCGGCCTTAC 59.585 52.381 0.00 2.39 36.34 2.34
61 62 1.542547 CCACATGGTATCGGCCTTACC 60.543 57.143 19.83 19.83 39.69 2.85
70 71 2.816718 GGCCTTACCGCGATACCA 59.183 61.111 8.23 0.00 0.00 3.25
71 72 1.370064 GGCCTTACCGCGATACCAT 59.630 57.895 8.23 0.00 0.00 3.55
72 73 0.669625 GGCCTTACCGCGATACCATC 60.670 60.000 8.23 0.00 0.00 3.51
73 74 0.669625 GCCTTACCGCGATACCATCC 60.670 60.000 8.23 0.00 0.00 3.51
74 75 0.966920 CCTTACCGCGATACCATCCT 59.033 55.000 8.23 0.00 0.00 3.24
75 76 1.336887 CCTTACCGCGATACCATCCTG 60.337 57.143 8.23 0.00 0.00 3.86
76 77 1.340248 CTTACCGCGATACCATCCTGT 59.660 52.381 8.23 0.00 0.00 4.00
77 78 1.405872 TACCGCGATACCATCCTGTT 58.594 50.000 8.23 0.00 0.00 3.16
78 79 0.104304 ACCGCGATACCATCCTGTTC 59.896 55.000 8.23 0.00 0.00 3.18
79 80 0.939577 CCGCGATACCATCCTGTTCG 60.940 60.000 8.23 0.00 0.00 3.95
80 81 0.939577 CGCGATACCATCCTGTTCGG 60.940 60.000 0.00 0.00 0.00 4.30
81 82 0.600255 GCGATACCATCCTGTTCGGG 60.600 60.000 0.00 0.00 0.00 5.14
82 83 0.750850 CGATACCATCCTGTTCGGGT 59.249 55.000 0.00 0.00 37.43 5.28
83 84 1.538204 CGATACCATCCTGTTCGGGTG 60.538 57.143 0.00 0.00 44.01 4.61
84 85 0.180406 ATACCATCCTGTTCGGGTGC 59.820 55.000 0.00 0.00 42.98 5.01
85 86 0.907704 TACCATCCTGTTCGGGTGCT 60.908 55.000 0.00 0.00 42.98 4.40
86 87 1.746615 CCATCCTGTTCGGGTGCTG 60.747 63.158 0.00 0.00 42.98 4.41
87 88 2.045926 ATCCTGTTCGGGTGCTGC 60.046 61.111 0.00 0.00 0.00 5.25
88 89 2.596851 ATCCTGTTCGGGTGCTGCT 61.597 57.895 0.00 0.00 0.00 4.24
89 90 2.129555 ATCCTGTTCGGGTGCTGCTT 62.130 55.000 0.00 0.00 0.00 3.91
90 91 2.620112 CCTGTTCGGGTGCTGCTTG 61.620 63.158 0.00 0.00 0.00 4.01
91 92 3.259425 CTGTTCGGGTGCTGCTTGC 62.259 63.158 0.00 0.00 43.25 4.01
108 109 3.754068 CATGCCTGCACAGTGTGT 58.246 55.556 23.73 0.30 35.75 3.72
109 110 1.577922 CATGCCTGCACAGTGTGTC 59.422 57.895 23.73 16.16 35.75 3.67
110 111 1.601759 ATGCCTGCACAGTGTGTCC 60.602 57.895 23.73 9.35 35.75 4.02
111 112 2.980233 GCCTGCACAGTGTGTCCC 60.980 66.667 23.73 8.63 35.75 4.46
112 113 2.281761 CCTGCACAGTGTGTCCCC 60.282 66.667 23.73 8.28 35.75 4.81
113 114 2.666190 CTGCACAGTGTGTCCCCG 60.666 66.667 23.73 5.28 35.75 5.73
114 115 3.460672 CTGCACAGTGTGTCCCCGT 62.461 63.158 23.73 0.00 35.75 5.28
115 116 2.665185 GCACAGTGTGTCCCCGTC 60.665 66.667 23.73 2.17 35.75 4.79
116 117 2.818841 CACAGTGTGTCCCCGTCA 59.181 61.111 15.43 0.00 0.00 4.35
117 118 1.145156 CACAGTGTGTCCCCGTCAA 59.855 57.895 15.43 0.00 0.00 3.18
118 119 0.880278 CACAGTGTGTCCCCGTCAAG 60.880 60.000 15.43 0.00 0.00 3.02
119 120 1.301716 CAGTGTGTCCCCGTCAAGG 60.302 63.158 0.00 0.00 40.63 3.61
120 121 1.764854 AGTGTGTCCCCGTCAAGGT 60.765 57.895 0.00 0.00 38.74 3.50
121 122 1.301479 GTGTGTCCCCGTCAAGGTC 60.301 63.158 0.00 0.00 38.74 3.85
122 123 1.762858 TGTGTCCCCGTCAAGGTCA 60.763 57.895 0.00 0.00 38.74 4.02
123 124 1.338890 TGTGTCCCCGTCAAGGTCAA 61.339 55.000 0.00 0.00 38.74 3.18
124 125 0.602905 GTGTCCCCGTCAAGGTCAAG 60.603 60.000 0.00 0.00 38.74 3.02
125 126 1.671379 GTCCCCGTCAAGGTCAAGC 60.671 63.158 0.00 0.00 38.74 4.01
126 127 1.841556 TCCCCGTCAAGGTCAAGCT 60.842 57.895 0.00 0.00 38.74 3.74
127 128 1.376037 CCCCGTCAAGGTCAAGCTC 60.376 63.158 0.00 0.00 38.74 4.09
128 129 1.376037 CCCGTCAAGGTCAAGCTCC 60.376 63.158 0.00 0.00 38.74 4.70
129 130 1.674057 CCGTCAAGGTCAAGCTCCT 59.326 57.895 0.00 0.00 36.81 3.69
130 131 0.895530 CCGTCAAGGTCAAGCTCCTA 59.104 55.000 0.00 0.00 34.56 2.94
131 132 1.482593 CCGTCAAGGTCAAGCTCCTAT 59.517 52.381 0.00 0.00 34.56 2.57
132 133 2.482142 CCGTCAAGGTCAAGCTCCTATC 60.482 54.545 0.00 0.00 34.56 2.08
133 134 2.166459 CGTCAAGGTCAAGCTCCTATCA 59.834 50.000 0.00 0.00 34.56 2.15
134 135 3.181471 CGTCAAGGTCAAGCTCCTATCAT 60.181 47.826 0.00 0.00 34.56 2.45
135 136 4.125703 GTCAAGGTCAAGCTCCTATCATG 58.874 47.826 0.00 0.00 34.56 3.07
136 137 3.776969 TCAAGGTCAAGCTCCTATCATGT 59.223 43.478 0.00 0.00 34.56 3.21
137 138 4.125703 CAAGGTCAAGCTCCTATCATGTC 58.874 47.826 0.00 0.00 34.56 3.06
138 139 3.652055 AGGTCAAGCTCCTATCATGTCT 58.348 45.455 0.00 0.00 33.04 3.41
139 140 3.387374 AGGTCAAGCTCCTATCATGTCTG 59.613 47.826 0.00 0.00 33.04 3.51
140 141 3.494048 GGTCAAGCTCCTATCATGTCTGG 60.494 52.174 0.00 0.00 0.00 3.86
141 142 2.702478 TCAAGCTCCTATCATGTCTGGG 59.298 50.000 0.00 0.00 0.00 4.45
142 143 1.055040 AGCTCCTATCATGTCTGGGC 58.945 55.000 0.00 0.34 0.00 5.36
143 144 0.036022 GCTCCTATCATGTCTGGGCC 59.964 60.000 0.00 0.00 0.00 5.80
144 145 0.689623 CTCCTATCATGTCTGGGCCC 59.310 60.000 17.59 17.59 0.00 5.80
145 146 0.030195 TCCTATCATGTCTGGGCCCA 60.030 55.000 26.67 26.67 0.00 5.36
146 147 0.846015 CCTATCATGTCTGGGCCCAA 59.154 55.000 28.29 12.38 0.00 4.12
147 148 1.477558 CCTATCATGTCTGGGCCCAAC 60.478 57.143 28.29 24.95 0.00 3.77
148 149 0.550914 TATCATGTCTGGGCCCAACC 59.449 55.000 28.29 19.40 37.93 3.77
149 150 1.217057 ATCATGTCTGGGCCCAACCT 61.217 55.000 28.29 16.25 39.10 3.50
150 151 1.679977 CATGTCTGGGCCCAACCTG 60.680 63.158 28.29 22.80 39.10 4.00
151 152 2.162906 ATGTCTGGGCCCAACCTGT 61.163 57.895 28.29 8.29 39.10 4.00
152 153 2.034221 GTCTGGGCCCAACCTGTC 59.966 66.667 28.29 8.16 39.10 3.51
153 154 2.449518 TCTGGGCCCAACCTGTCA 60.450 61.111 28.29 0.00 39.10 3.58
154 155 1.852157 TCTGGGCCCAACCTGTCAT 60.852 57.895 28.29 0.00 39.10 3.06
155 156 0.548926 TCTGGGCCCAACCTGTCATA 60.549 55.000 28.29 0.00 39.10 2.15
156 157 0.331278 CTGGGCCCAACCTGTCATAA 59.669 55.000 28.29 0.00 39.10 1.90
157 158 0.039035 TGGGCCCAACCTGTCATAAC 59.961 55.000 26.33 0.00 39.10 1.89
158 159 1.029947 GGGCCCAACCTGTCATAACG 61.030 60.000 19.95 0.00 39.10 3.18
159 160 1.029947 GGCCCAACCTGTCATAACGG 61.030 60.000 0.00 0.00 34.51 4.44
160 161 0.322187 GCCCAACCTGTCATAACGGT 60.322 55.000 0.00 0.00 34.96 4.83
161 162 1.734163 CCCAACCTGTCATAACGGTC 58.266 55.000 0.00 0.00 33.20 4.79
162 163 1.278127 CCCAACCTGTCATAACGGTCT 59.722 52.381 0.00 0.00 33.20 3.85
163 164 2.498481 CCCAACCTGTCATAACGGTCTA 59.502 50.000 0.00 0.00 33.20 2.59
164 165 3.518590 CCAACCTGTCATAACGGTCTAC 58.481 50.000 0.00 0.00 33.20 2.59
165 166 3.194968 CCAACCTGTCATAACGGTCTACT 59.805 47.826 0.00 0.00 33.20 2.57
166 167 4.322499 CCAACCTGTCATAACGGTCTACTT 60.322 45.833 0.00 0.00 33.20 2.24
167 168 5.105635 CCAACCTGTCATAACGGTCTACTTA 60.106 44.000 0.00 0.00 33.20 2.24
168 169 6.392354 CAACCTGTCATAACGGTCTACTTAA 58.608 40.000 0.00 0.00 33.20 1.85
169 170 5.958955 ACCTGTCATAACGGTCTACTTAAC 58.041 41.667 0.00 0.00 29.93 2.01
170 171 5.477984 ACCTGTCATAACGGTCTACTTAACA 59.522 40.000 0.00 0.00 29.93 2.41
171 172 6.034591 CCTGTCATAACGGTCTACTTAACAG 58.965 44.000 0.00 0.00 0.00 3.16
172 173 6.349944 CCTGTCATAACGGTCTACTTAACAGT 60.350 42.308 0.00 0.00 36.99 3.55
173 174 6.615088 TGTCATAACGGTCTACTTAACAGTC 58.385 40.000 0.00 0.00 34.06 3.51
174 175 6.207221 TGTCATAACGGTCTACTTAACAGTCA 59.793 38.462 0.00 0.00 34.06 3.41
175 176 7.086376 GTCATAACGGTCTACTTAACAGTCAA 58.914 38.462 0.00 0.00 34.06 3.18
176 177 7.596248 GTCATAACGGTCTACTTAACAGTCAAA 59.404 37.037 0.00 0.00 34.06 2.69
177 178 8.143193 TCATAACGGTCTACTTAACAGTCAAAA 58.857 33.333 0.00 0.00 34.06 2.44
178 179 8.932791 CATAACGGTCTACTTAACAGTCAAAAT 58.067 33.333 0.00 0.00 34.06 1.82
180 181 8.891671 AACGGTCTACTTAACAGTCAAAATAA 57.108 30.769 0.00 0.00 34.06 1.40
181 182 8.891671 ACGGTCTACTTAACAGTCAAAATAAA 57.108 30.769 0.00 0.00 34.06 1.40
182 183 8.768019 ACGGTCTACTTAACAGTCAAAATAAAC 58.232 33.333 0.00 0.00 34.06 2.01
183 184 7.948363 CGGTCTACTTAACAGTCAAAATAAACG 59.052 37.037 0.00 0.00 34.06 3.60
184 185 8.981647 GGTCTACTTAACAGTCAAAATAAACGA 58.018 33.333 0.00 0.00 34.06 3.85
200 201 2.793278 ACGAAGTTGAATTTGCCACC 57.207 45.000 0.00 0.00 37.78 4.61
201 202 2.028130 ACGAAGTTGAATTTGCCACCA 58.972 42.857 0.00 0.00 37.78 4.17
202 203 2.223711 ACGAAGTTGAATTTGCCACCAC 60.224 45.455 0.00 0.00 37.78 4.16
203 204 2.223688 CGAAGTTGAATTTGCCACCACA 60.224 45.455 0.00 0.00 0.00 4.17
204 205 3.552684 CGAAGTTGAATTTGCCACCACAT 60.553 43.478 0.00 0.00 0.00 3.21
205 206 3.665745 AGTTGAATTTGCCACCACATC 57.334 42.857 0.00 0.00 0.00 3.06
206 207 2.964464 AGTTGAATTTGCCACCACATCA 59.036 40.909 0.00 0.00 0.00 3.07
207 208 3.387374 AGTTGAATTTGCCACCACATCAA 59.613 39.130 0.00 0.00 0.00 2.57
208 209 3.383620 TGAATTTGCCACCACATCAAC 57.616 42.857 0.00 0.00 0.00 3.18
209 210 2.036992 TGAATTTGCCACCACATCAACC 59.963 45.455 0.00 0.00 0.00 3.77
210 211 0.975887 ATTTGCCACCACATCAACCC 59.024 50.000 0.00 0.00 0.00 4.11
211 212 0.105760 TTTGCCACCACATCAACCCT 60.106 50.000 0.00 0.00 0.00 4.34
212 213 0.827089 TTGCCACCACATCAACCCTG 60.827 55.000 0.00 0.00 0.00 4.45
213 214 1.074775 GCCACCACATCAACCCTGA 59.925 57.895 0.00 0.00 35.56 3.86
214 215 1.244019 GCCACCACATCAACCCTGAC 61.244 60.000 0.00 0.00 33.30 3.51
215 216 0.110295 CCACCACATCAACCCTGACA 59.890 55.000 0.00 0.00 33.30 3.58
216 217 1.272092 CCACCACATCAACCCTGACAT 60.272 52.381 0.00 0.00 33.30 3.06
217 218 1.814394 CACCACATCAACCCTGACATG 59.186 52.381 0.00 0.00 33.30 3.21
218 219 1.425066 ACCACATCAACCCTGACATGT 59.575 47.619 0.00 0.00 33.30 3.21
219 220 1.814394 CCACATCAACCCTGACATGTG 59.186 52.381 1.15 4.27 40.21 3.21
220 221 1.814394 CACATCAACCCTGACATGTGG 59.186 52.381 1.15 0.00 38.26 4.17
225 226 2.677228 CCCTGACATGTGGGTCCC 59.323 66.667 12.26 0.00 38.65 4.46
226 227 2.268920 CCTGACATGTGGGTCCCG 59.731 66.667 1.15 0.00 36.97 5.14
227 228 2.436646 CTGACATGTGGGTCCCGC 60.437 66.667 15.15 15.15 36.97 6.13
233 234 3.245346 TGTGGGTCCCGCATGTCA 61.245 61.111 20.79 0.00 39.28 3.58
234 235 2.272146 GTGGGTCCCGCATGTCAT 59.728 61.111 17.13 0.00 33.65 3.06
235 236 2.114670 GTGGGTCCCGCATGTCATG 61.115 63.158 17.13 8.56 33.65 3.07
236 237 2.297129 TGGGTCCCGCATGTCATGA 61.297 57.895 17.24 0.00 0.00 3.07
237 238 1.077787 GGGTCCCGCATGTCATGAA 60.078 57.895 17.24 0.00 0.00 2.57
238 239 1.376609 GGGTCCCGCATGTCATGAAC 61.377 60.000 17.24 8.00 0.00 3.18
239 240 0.676466 GGTCCCGCATGTCATGAACA 60.676 55.000 17.24 0.00 43.51 3.18
252 253 6.715344 TGTCATGAACATACTTAAACCGTC 57.285 37.500 0.00 0.00 31.20 4.79
253 254 6.460781 TGTCATGAACATACTTAAACCGTCT 58.539 36.000 0.00 0.00 31.20 4.18
254 255 7.604549 TGTCATGAACATACTTAAACCGTCTA 58.395 34.615 0.00 0.00 31.20 2.59
255 256 8.089597 TGTCATGAACATACTTAAACCGTCTAA 58.910 33.333 0.00 0.00 31.20 2.10
256 257 8.928733 GTCATGAACATACTTAAACCGTCTAAA 58.071 33.333 0.00 0.00 0.00 1.85
257 258 8.928733 TCATGAACATACTTAAACCGTCTAAAC 58.071 33.333 0.00 0.00 0.00 2.01
258 259 8.932791 CATGAACATACTTAAACCGTCTAAACT 58.067 33.333 0.00 0.00 0.00 2.66
259 260 8.301730 TGAACATACTTAAACCGTCTAAACTG 57.698 34.615 0.00 0.00 0.00 3.16
260 261 7.385752 TGAACATACTTAAACCGTCTAAACTGG 59.614 37.037 0.00 0.00 0.00 4.00
261 262 6.762333 ACATACTTAAACCGTCTAAACTGGT 58.238 36.000 0.00 0.00 34.96 4.00
262 263 6.870439 ACATACTTAAACCGTCTAAACTGGTC 59.130 38.462 0.00 0.00 33.20 4.02
263 264 5.280654 ACTTAAACCGTCTAAACTGGTCA 57.719 39.130 0.00 0.00 33.20 4.02
264 265 5.861727 ACTTAAACCGTCTAAACTGGTCAT 58.138 37.500 0.00 0.00 33.20 3.06
265 266 6.293698 ACTTAAACCGTCTAAACTGGTCATT 58.706 36.000 0.00 0.00 33.20 2.57
266 267 7.444299 ACTTAAACCGTCTAAACTGGTCATTA 58.556 34.615 0.00 0.00 33.20 1.90
267 268 8.098912 ACTTAAACCGTCTAAACTGGTCATTAT 58.901 33.333 0.00 0.00 33.20 1.28
268 269 6.980051 AAACCGTCTAAACTGGTCATTATC 57.020 37.500 0.00 0.00 33.20 1.75
269 270 5.934402 ACCGTCTAAACTGGTCATTATCT 57.066 39.130 0.00 0.00 29.93 1.98
270 271 5.661458 ACCGTCTAAACTGGTCATTATCTG 58.339 41.667 0.00 0.00 29.93 2.90
271 272 5.421056 ACCGTCTAAACTGGTCATTATCTGA 59.579 40.000 0.00 0.00 29.93 3.27
272 273 6.070995 ACCGTCTAAACTGGTCATTATCTGAA 60.071 38.462 0.00 0.00 35.07 3.02
273 274 6.986817 CCGTCTAAACTGGTCATTATCTGAAT 59.013 38.462 0.00 0.00 35.07 2.57
274 275 7.042456 CCGTCTAAACTGGTCATTATCTGAATG 60.042 40.741 0.00 0.00 35.07 2.67
275 276 7.492669 CGTCTAAACTGGTCATTATCTGAATGT 59.507 37.037 0.00 0.00 35.07 2.71
276 277 8.607459 GTCTAAACTGGTCATTATCTGAATGTG 58.393 37.037 0.00 0.00 35.07 3.21
277 278 6.764308 AAACTGGTCATTATCTGAATGTGG 57.236 37.500 0.00 0.00 35.07 4.17
278 279 5.698741 ACTGGTCATTATCTGAATGTGGA 57.301 39.130 0.00 0.00 35.07 4.02
279 280 5.678583 ACTGGTCATTATCTGAATGTGGAG 58.321 41.667 0.00 0.00 35.07 3.86
280 281 5.190528 ACTGGTCATTATCTGAATGTGGAGT 59.809 40.000 0.00 0.00 35.07 3.85
281 282 6.065976 TGGTCATTATCTGAATGTGGAGTT 57.934 37.500 0.00 0.00 35.07 3.01
282 283 6.484288 TGGTCATTATCTGAATGTGGAGTTT 58.516 36.000 0.00 0.00 35.07 2.66
283 284 6.947733 TGGTCATTATCTGAATGTGGAGTTTT 59.052 34.615 0.00 0.00 35.07 2.43
284 285 7.451255 TGGTCATTATCTGAATGTGGAGTTTTT 59.549 33.333 0.00 0.00 35.07 1.94
285 286 8.956426 GGTCATTATCTGAATGTGGAGTTTTTA 58.044 33.333 0.00 0.00 35.07 1.52
286 287 9.994432 GTCATTATCTGAATGTGGAGTTTTTAG 57.006 33.333 0.00 0.00 35.07 1.85
287 288 9.177608 TCATTATCTGAATGTGGAGTTTTTAGG 57.822 33.333 0.00 0.00 0.00 2.69
288 289 7.938140 TTATCTGAATGTGGAGTTTTTAGGG 57.062 36.000 0.00 0.00 0.00 3.53
289 290 5.576563 TCTGAATGTGGAGTTTTTAGGGA 57.423 39.130 0.00 0.00 0.00 4.20
290 291 5.313712 TCTGAATGTGGAGTTTTTAGGGAC 58.686 41.667 0.00 0.00 0.00 4.46
291 292 5.055265 TGAATGTGGAGTTTTTAGGGACA 57.945 39.130 0.00 0.00 0.00 4.02
292 293 5.450453 TGAATGTGGAGTTTTTAGGGACAA 58.550 37.500 0.00 0.00 0.00 3.18
293 294 5.894393 TGAATGTGGAGTTTTTAGGGACAAA 59.106 36.000 0.00 0.00 0.00 2.83
294 295 6.381420 TGAATGTGGAGTTTTTAGGGACAAAA 59.619 34.615 0.00 0.00 0.00 2.44
295 296 6.800072 ATGTGGAGTTTTTAGGGACAAAAA 57.200 33.333 0.00 0.00 35.56 1.94
296 297 6.800072 TGTGGAGTTTTTAGGGACAAAAAT 57.200 33.333 0.00 0.00 39.04 1.82
297 298 7.899648 TGTGGAGTTTTTAGGGACAAAAATA 57.100 32.000 0.00 0.00 39.04 1.40
298 299 8.307582 TGTGGAGTTTTTAGGGACAAAAATAA 57.692 30.769 0.00 0.00 39.04 1.40
299 300 8.759782 TGTGGAGTTTTTAGGGACAAAAATAAA 58.240 29.630 0.00 0.00 39.04 1.40
300 301 9.602568 GTGGAGTTTTTAGGGACAAAAATAAAA 57.397 29.630 0.00 0.00 39.04 1.52
359 360 5.123936 GTTTGGGCTATAGATTTTCGTCCT 58.876 41.667 3.21 0.00 0.00 3.85
360 361 6.285990 GTTTGGGCTATAGATTTTCGTCCTA 58.714 40.000 3.21 0.00 0.00 2.94
397 398 4.096231 CCGTTGGATTAATTGCACAGATCA 59.904 41.667 0.00 0.00 0.00 2.92
423 424 0.249489 ACTTGGCAGAGACACGTCAC 60.249 55.000 0.00 0.00 0.00 3.67
457 458 0.531974 TCGCTGAAAACTCGCTTGGT 60.532 50.000 0.00 0.00 0.00 3.67
483 484 1.603172 CGCGACCTTATCCACTCATCC 60.603 57.143 0.00 0.00 0.00 3.51
539 540 2.995574 CCGACCCGGTTCACCTCT 60.996 66.667 0.00 0.00 42.73 3.69
630 632 3.131396 CAGCTACGGCGAATCCTATTTT 58.869 45.455 16.62 0.00 44.37 1.82
632 634 2.870411 GCTACGGCGAATCCTATTTTGT 59.130 45.455 16.62 0.00 0.00 2.83
689 691 3.311110 GGTGAGGGTCGTGGAGCA 61.311 66.667 0.00 0.00 0.00 4.26
760 763 1.469335 GGTGGGTGACGAGGAGTTGA 61.469 60.000 0.00 0.00 0.00 3.18
770 773 0.389948 GAGGAGTTGACGCGGACAAT 60.390 55.000 19.98 11.50 0.00 2.71
786 789 1.762460 AATGGGACGGCGAGGAGAT 60.762 57.895 16.62 0.00 0.00 2.75
787 790 1.749334 AATGGGACGGCGAGGAGATC 61.749 60.000 16.62 0.00 0.00 2.75
792 795 0.309612 GACGGCGAGGAGATCTCTTC 59.690 60.000 21.77 21.77 40.30 2.87
929 937 3.240134 GACTCGCCAAGCCACTCCA 62.240 63.158 0.00 0.00 0.00 3.86
956 972 4.862823 GAGGGGAGGTCGGGAGGG 62.863 77.778 0.00 0.00 0.00 4.30
986 1002 2.202703 GTCGGCGGCGTCTACATT 60.203 61.111 31.06 0.00 0.00 2.71
995 1011 2.540157 CGGCGTCTACATTGTCGTCATA 60.540 50.000 0.00 0.00 0.00 2.15
996 1012 3.441163 GGCGTCTACATTGTCGTCATAA 58.559 45.455 0.00 0.00 0.00 1.90
1103 1120 0.317603 GGCACGATCAATGATGCAGC 60.318 55.000 0.00 0.00 39.92 5.25
1201 1218 3.385384 CCTCCACTCCAGCAGCGA 61.385 66.667 0.00 0.00 0.00 4.93
1297 1314 1.459592 CAGGTTCGTTCGTTGGACATC 59.540 52.381 0.00 0.00 0.00 3.06
1558 1583 3.475575 TCACTTTGTGTGCAAGCTATGA 58.524 40.909 0.00 0.00 45.81 2.15
1687 1718 9.643693 ACAATGGCAAACTATTTCTATTTCTTG 57.356 29.630 0.00 0.00 0.00 3.02
1859 1891 9.935682 GGAAACATAATACATGTGTGAATACAG 57.064 33.333 9.11 0.00 37.52 2.74
1913 1945 6.707599 ACTTGACTAGCTCGTTAATCAAAC 57.292 37.500 0.00 0.00 34.52 2.93
2004 2037 5.892524 TGATCTGATTGACATGACCCATA 57.107 39.130 0.00 0.00 0.00 2.74
2050 2083 6.687105 CGTTTAGTATGTTGCTATTGCTTTCC 59.313 38.462 0.00 0.00 40.48 3.13
2164 2197 7.866393 CGTAACTGGGTGATTATAAAGGAGTAG 59.134 40.741 0.00 0.00 0.00 2.57
2219 2252 6.053005 TGGCGTATTTCGAGATTAGGATTTT 58.947 36.000 0.00 0.00 42.86 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.547279 GGGGATTGGAGGAATTTATATTGTATT 57.453 33.333 0.00 0.00 0.00 1.89
4 5 8.915438 AGGGGATTGGAGGAATTTATATTGTAT 58.085 33.333 0.00 0.00 0.00 2.29
5 6 8.300752 AGGGGATTGGAGGAATTTATATTGTA 57.699 34.615 0.00 0.00 0.00 2.41
6 7 7.075526 AGAGGGGATTGGAGGAATTTATATTGT 59.924 37.037 0.00 0.00 0.00 2.71
7 8 7.473593 AGAGGGGATTGGAGGAATTTATATTG 58.526 38.462 0.00 0.00 0.00 1.90
8 9 7.522529 AGAGAGGGGATTGGAGGAATTTATATT 59.477 37.037 0.00 0.00 0.00 1.28
9 10 7.034454 AGAGAGGGGATTGGAGGAATTTATAT 58.966 38.462 0.00 0.00 0.00 0.86
10 11 6.402442 AGAGAGGGGATTGGAGGAATTTATA 58.598 40.000 0.00 0.00 0.00 0.98
11 12 5.238736 AGAGAGGGGATTGGAGGAATTTAT 58.761 41.667 0.00 0.00 0.00 1.40
12 13 4.646157 AGAGAGGGGATTGGAGGAATTTA 58.354 43.478 0.00 0.00 0.00 1.40
13 14 3.478991 AGAGAGGGGATTGGAGGAATTT 58.521 45.455 0.00 0.00 0.00 1.82
14 15 3.157556 AGAGAGGGGATTGGAGGAATT 57.842 47.619 0.00 0.00 0.00 2.17
15 16 2.906169 AGAGAGGGGATTGGAGGAAT 57.094 50.000 0.00 0.00 0.00 3.01
16 17 4.077745 AGAATAGAGAGGGGATTGGAGGAA 60.078 45.833 0.00 0.00 0.00 3.36
17 18 3.472848 AGAATAGAGAGGGGATTGGAGGA 59.527 47.826 0.00 0.00 0.00 3.71
18 19 3.868062 AGAATAGAGAGGGGATTGGAGG 58.132 50.000 0.00 0.00 0.00 4.30
19 20 4.285775 GGAAGAATAGAGAGGGGATTGGAG 59.714 50.000 0.00 0.00 0.00 3.86
20 21 4.235372 GGAAGAATAGAGAGGGGATTGGA 58.765 47.826 0.00 0.00 0.00 3.53
21 22 3.976654 TGGAAGAATAGAGAGGGGATTGG 59.023 47.826 0.00 0.00 0.00 3.16
22 23 4.410228 TGTGGAAGAATAGAGAGGGGATTG 59.590 45.833 0.00 0.00 0.00 2.67
23 24 4.635473 TGTGGAAGAATAGAGAGGGGATT 58.365 43.478 0.00 0.00 0.00 3.01
24 25 4.286813 TGTGGAAGAATAGAGAGGGGAT 57.713 45.455 0.00 0.00 0.00 3.85
25 26 3.776731 TGTGGAAGAATAGAGAGGGGA 57.223 47.619 0.00 0.00 0.00 4.81
26 27 3.072184 CCATGTGGAAGAATAGAGAGGGG 59.928 52.174 0.00 0.00 37.39 4.79
27 28 3.713764 ACCATGTGGAAGAATAGAGAGGG 59.286 47.826 5.96 0.00 38.94 4.30
28 29 6.571344 CGATACCATGTGGAAGAATAGAGAGG 60.571 46.154 5.96 0.00 38.94 3.69
29 30 6.385843 CGATACCATGTGGAAGAATAGAGAG 58.614 44.000 5.96 0.00 38.94 3.20
30 31 5.243954 CCGATACCATGTGGAAGAATAGAGA 59.756 44.000 5.96 0.00 38.94 3.10
31 32 5.473931 CCGATACCATGTGGAAGAATAGAG 58.526 45.833 5.96 0.00 38.94 2.43
32 33 4.262463 GCCGATACCATGTGGAAGAATAGA 60.262 45.833 5.96 0.00 38.94 1.98
33 34 3.997021 GCCGATACCATGTGGAAGAATAG 59.003 47.826 5.96 0.00 38.94 1.73
34 35 3.244422 GGCCGATACCATGTGGAAGAATA 60.244 47.826 5.96 0.00 38.94 1.75
35 36 2.487265 GGCCGATACCATGTGGAAGAAT 60.487 50.000 5.96 0.00 38.94 2.40
36 37 1.134220 GGCCGATACCATGTGGAAGAA 60.134 52.381 5.96 0.00 38.94 2.52
37 38 0.468226 GGCCGATACCATGTGGAAGA 59.532 55.000 5.96 0.00 38.94 2.87
38 39 0.469917 AGGCCGATACCATGTGGAAG 59.530 55.000 5.96 0.00 38.94 3.46
39 40 0.916086 AAGGCCGATACCATGTGGAA 59.084 50.000 5.96 0.00 38.94 3.53
40 41 1.414919 GTAAGGCCGATACCATGTGGA 59.585 52.381 5.96 0.00 38.94 4.02
41 42 1.542547 GGTAAGGCCGATACCATGTGG 60.543 57.143 26.79 0.00 42.02 4.17
42 43 1.878953 GGTAAGGCCGATACCATGTG 58.121 55.000 26.79 0.00 42.02 3.21
53 54 0.669625 GATGGTATCGCGGTAAGGCC 60.670 60.000 6.13 1.17 0.00 5.19
54 55 0.669625 GGATGGTATCGCGGTAAGGC 60.670 60.000 6.13 0.00 0.00 4.35
55 56 0.966920 AGGATGGTATCGCGGTAAGG 59.033 55.000 6.13 0.00 0.00 2.69
56 57 1.340248 ACAGGATGGTATCGCGGTAAG 59.660 52.381 6.13 0.00 43.62 2.34
57 58 1.405872 ACAGGATGGTATCGCGGTAA 58.594 50.000 6.13 0.00 43.62 2.85
58 59 1.338973 GAACAGGATGGTATCGCGGTA 59.661 52.381 6.13 0.00 33.00 4.02
59 60 0.104304 GAACAGGATGGTATCGCGGT 59.896 55.000 6.13 0.00 33.00 5.68
60 61 0.939577 CGAACAGGATGGTATCGCGG 60.940 60.000 6.13 0.00 33.00 6.46
61 62 0.939577 CCGAACAGGATGGTATCGCG 60.940 60.000 0.00 0.00 33.00 5.87
62 63 0.600255 CCCGAACAGGATGGTATCGC 60.600 60.000 0.00 0.00 33.00 4.58
63 64 0.750850 ACCCGAACAGGATGGTATCG 59.249 55.000 0.00 0.00 33.00 2.92
64 65 1.810412 GCACCCGAACAGGATGGTATC 60.810 57.143 0.00 0.00 33.00 2.24
65 66 0.180406 GCACCCGAACAGGATGGTAT 59.820 55.000 0.00 0.00 33.00 2.73
66 67 0.907704 AGCACCCGAACAGGATGGTA 60.908 55.000 0.00 0.00 33.00 3.25
67 68 2.224159 AGCACCCGAACAGGATGGT 61.224 57.895 0.00 0.00 42.46 3.55
68 69 1.746615 CAGCACCCGAACAGGATGG 60.747 63.158 0.00 0.00 45.00 3.51
69 70 2.401766 GCAGCACCCGAACAGGATG 61.402 63.158 0.00 0.00 45.00 3.51
70 71 2.045926 GCAGCACCCGAACAGGAT 60.046 61.111 0.00 0.00 45.00 3.24
71 72 2.818169 AAGCAGCACCCGAACAGGA 61.818 57.895 0.00 0.00 45.00 3.86
72 73 2.281761 AAGCAGCACCCGAACAGG 60.282 61.111 0.00 0.00 40.63 4.00
73 74 2.949106 CAAGCAGCACCCGAACAG 59.051 61.111 0.00 0.00 0.00 3.16
74 75 3.286751 GCAAGCAGCACCCGAACA 61.287 61.111 0.00 0.00 44.79 3.18
91 92 1.577922 GACACACTGTGCAGGCATG 59.422 57.895 9.20 0.00 36.98 4.06
92 93 1.601759 GGACACACTGTGCAGGCAT 60.602 57.895 9.20 0.00 38.66 4.40
93 94 2.203195 GGACACACTGTGCAGGCA 60.203 61.111 9.20 0.00 38.66 4.75
94 95 2.980233 GGGACACACTGTGCAGGC 60.980 66.667 9.20 2.71 40.73 4.85
95 96 2.281761 GGGGACACACTGTGCAGG 60.282 66.667 9.20 0.33 40.73 4.85
96 97 2.666190 CGGGGACACACTGTGCAG 60.666 66.667 9.20 3.43 40.73 4.41
97 98 3.454587 GACGGGGACACACTGTGCA 62.455 63.158 9.20 0.00 40.73 4.57
98 99 2.665185 GACGGGGACACACTGTGC 60.665 66.667 9.20 2.44 38.03 4.57
99 100 0.880278 CTTGACGGGGACACACTGTG 60.880 60.000 7.68 7.68 39.75 3.66
100 101 1.445942 CTTGACGGGGACACACTGT 59.554 57.895 0.00 0.00 0.00 3.55
101 102 1.301716 CCTTGACGGGGACACACTG 60.302 63.158 0.00 0.00 0.00 3.66
102 103 1.755393 GACCTTGACGGGGACACACT 61.755 60.000 0.00 0.00 36.97 3.55
103 104 1.301479 GACCTTGACGGGGACACAC 60.301 63.158 0.00 0.00 36.97 3.82
104 105 1.338890 TTGACCTTGACGGGGACACA 61.339 55.000 0.00 0.00 36.97 3.72
105 106 0.602905 CTTGACCTTGACGGGGACAC 60.603 60.000 0.00 0.00 36.97 3.67
106 107 1.752198 CTTGACCTTGACGGGGACA 59.248 57.895 0.00 0.00 36.97 4.02
107 108 1.671379 GCTTGACCTTGACGGGGAC 60.671 63.158 0.00 0.00 36.97 4.46
108 109 1.827399 GAGCTTGACCTTGACGGGGA 61.827 60.000 0.00 0.00 36.97 4.81
109 110 1.376037 GAGCTTGACCTTGACGGGG 60.376 63.158 0.00 0.00 36.97 5.73
110 111 1.376037 GGAGCTTGACCTTGACGGG 60.376 63.158 0.00 0.00 36.97 5.28
111 112 0.895530 TAGGAGCTTGACCTTGACGG 59.104 55.000 0.00 0.00 38.76 4.79
112 113 2.166459 TGATAGGAGCTTGACCTTGACG 59.834 50.000 0.00 0.00 38.76 4.35
113 114 3.895232 TGATAGGAGCTTGACCTTGAC 57.105 47.619 0.00 0.00 38.76 3.18
114 115 3.776969 ACATGATAGGAGCTTGACCTTGA 59.223 43.478 0.00 0.00 38.76 3.02
115 116 4.125703 GACATGATAGGAGCTTGACCTTG 58.874 47.826 0.00 0.00 38.76 3.61
116 117 4.036518 AGACATGATAGGAGCTTGACCTT 58.963 43.478 0.00 0.00 38.76 3.50
117 118 3.387374 CAGACATGATAGGAGCTTGACCT 59.613 47.826 0.00 0.00 41.05 3.85
118 119 3.494048 CCAGACATGATAGGAGCTTGACC 60.494 52.174 0.00 0.00 0.00 4.02
119 120 3.494048 CCCAGACATGATAGGAGCTTGAC 60.494 52.174 0.00 0.00 0.00 3.18
120 121 2.702478 CCCAGACATGATAGGAGCTTGA 59.298 50.000 0.00 0.00 0.00 3.02
121 122 2.809665 GCCCAGACATGATAGGAGCTTG 60.810 54.545 0.00 0.00 0.00 4.01
122 123 1.419387 GCCCAGACATGATAGGAGCTT 59.581 52.381 0.00 0.00 0.00 3.74
123 124 1.055040 GCCCAGACATGATAGGAGCT 58.945 55.000 0.00 0.00 0.00 4.09
124 125 0.036022 GGCCCAGACATGATAGGAGC 59.964 60.000 0.00 3.75 0.00 4.70
125 126 0.689623 GGGCCCAGACATGATAGGAG 59.310 60.000 19.95 0.00 0.00 3.69
126 127 0.030195 TGGGCCCAGACATGATAGGA 60.030 55.000 24.45 0.00 0.00 2.94
127 128 0.846015 TTGGGCCCAGACATGATAGG 59.154 55.000 26.87 0.00 0.00 2.57
128 129 1.477558 GGTTGGGCCCAGACATGATAG 60.478 57.143 26.87 0.00 0.00 2.08
129 130 0.550914 GGTTGGGCCCAGACATGATA 59.449 55.000 26.87 4.06 0.00 2.15
130 131 1.217057 AGGTTGGGCCCAGACATGAT 61.217 55.000 26.87 10.27 38.26 2.45
131 132 1.852157 AGGTTGGGCCCAGACATGA 60.852 57.895 26.87 5.91 38.26 3.07
132 133 1.679977 CAGGTTGGGCCCAGACATG 60.680 63.158 26.87 26.43 38.26 3.21
133 134 2.142292 GACAGGTTGGGCCCAGACAT 62.142 60.000 26.87 20.14 38.26 3.06
134 135 2.776526 ACAGGTTGGGCCCAGACA 60.777 61.111 26.87 7.78 38.26 3.41
135 136 2.034221 GACAGGTTGGGCCCAGAC 59.966 66.667 26.87 23.90 38.26 3.51
136 137 0.548926 TATGACAGGTTGGGCCCAGA 60.549 55.000 26.87 13.70 38.26 3.86
137 138 0.331278 TTATGACAGGTTGGGCCCAG 59.669 55.000 26.87 16.40 38.26 4.45
138 139 0.039035 GTTATGACAGGTTGGGCCCA 59.961 55.000 24.45 24.45 38.26 5.36
139 140 1.029947 CGTTATGACAGGTTGGGCCC 61.030 60.000 17.59 17.59 38.26 5.80
140 141 1.029947 CCGTTATGACAGGTTGGGCC 61.030 60.000 0.00 0.00 37.58 5.80
141 142 0.322187 ACCGTTATGACAGGTTGGGC 60.322 55.000 0.00 0.00 33.96 5.36
142 143 1.278127 AGACCGTTATGACAGGTTGGG 59.722 52.381 5.81 0.00 38.57 4.12
143 144 2.762535 AGACCGTTATGACAGGTTGG 57.237 50.000 5.81 0.00 38.57 3.77
144 145 4.451629 AGTAGACCGTTATGACAGGTTG 57.548 45.455 5.81 0.00 38.57 3.77
145 146 6.015180 TGTTAAGTAGACCGTTATGACAGGTT 60.015 38.462 5.81 1.12 38.57 3.50
146 147 5.477984 TGTTAAGTAGACCGTTATGACAGGT 59.522 40.000 4.31 4.31 41.63 4.00
147 148 5.957798 TGTTAAGTAGACCGTTATGACAGG 58.042 41.667 0.00 0.00 0.00 4.00
148 149 6.618811 ACTGTTAAGTAGACCGTTATGACAG 58.381 40.000 0.00 0.00 33.79 3.51
149 150 6.207221 TGACTGTTAAGTAGACCGTTATGACA 59.793 38.462 0.00 0.00 36.52 3.58
150 151 6.615088 TGACTGTTAAGTAGACCGTTATGAC 58.385 40.000 0.00 0.00 36.52 3.06
151 152 6.822667 TGACTGTTAAGTAGACCGTTATGA 57.177 37.500 0.00 0.00 36.52 2.15
152 153 7.878477 TTTGACTGTTAAGTAGACCGTTATG 57.122 36.000 0.00 0.00 36.52 1.90
154 155 9.979578 TTATTTTGACTGTTAAGTAGACCGTTA 57.020 29.630 0.00 0.00 36.52 3.18
155 156 8.891671 TTATTTTGACTGTTAAGTAGACCGTT 57.108 30.769 0.00 0.00 36.52 4.44
156 157 8.768019 GTTTATTTTGACTGTTAAGTAGACCGT 58.232 33.333 0.00 0.00 36.52 4.83
157 158 7.948363 CGTTTATTTTGACTGTTAAGTAGACCG 59.052 37.037 0.00 0.00 36.52 4.79
158 159 8.981647 TCGTTTATTTTGACTGTTAAGTAGACC 58.018 33.333 0.00 0.00 36.52 3.85
163 164 9.498307 CAACTTCGTTTATTTTGACTGTTAAGT 57.502 29.630 0.00 0.00 40.21 2.24
164 165 9.710979 TCAACTTCGTTTATTTTGACTGTTAAG 57.289 29.630 0.00 0.00 0.00 1.85
167 168 9.581099 AATTCAACTTCGTTTATTTTGACTGTT 57.419 25.926 0.00 0.00 0.00 3.16
168 169 9.581099 AAATTCAACTTCGTTTATTTTGACTGT 57.419 25.926 0.00 0.00 0.00 3.55
169 170 9.833894 CAAATTCAACTTCGTTTATTTTGACTG 57.166 29.630 0.00 0.00 29.34 3.51
170 171 8.539674 GCAAATTCAACTTCGTTTATTTTGACT 58.460 29.630 10.18 0.00 29.34 3.41
171 172 7.792048 GGCAAATTCAACTTCGTTTATTTTGAC 59.208 33.333 10.18 5.84 29.34 3.18
172 173 7.492669 TGGCAAATTCAACTTCGTTTATTTTGA 59.507 29.630 10.18 0.00 29.34 2.69
173 174 7.582319 GTGGCAAATTCAACTTCGTTTATTTTG 59.418 33.333 0.00 0.00 30.25 2.44
174 175 7.254624 GGTGGCAAATTCAACTTCGTTTATTTT 60.255 33.333 0.00 0.00 0.00 1.82
175 176 6.201997 GGTGGCAAATTCAACTTCGTTTATTT 59.798 34.615 0.00 0.00 0.00 1.40
176 177 5.694458 GGTGGCAAATTCAACTTCGTTTATT 59.306 36.000 0.00 0.00 0.00 1.40
177 178 5.221342 TGGTGGCAAATTCAACTTCGTTTAT 60.221 36.000 0.00 0.00 0.00 1.40
178 179 4.098044 TGGTGGCAAATTCAACTTCGTTTA 59.902 37.500 0.00 0.00 0.00 2.01
179 180 3.118956 TGGTGGCAAATTCAACTTCGTTT 60.119 39.130 0.00 0.00 0.00 3.60
180 181 2.428890 TGGTGGCAAATTCAACTTCGTT 59.571 40.909 0.00 0.00 0.00 3.85
181 182 2.028130 TGGTGGCAAATTCAACTTCGT 58.972 42.857 0.00 0.00 0.00 3.85
182 183 2.223688 TGTGGTGGCAAATTCAACTTCG 60.224 45.455 0.00 0.00 0.00 3.79
183 184 3.451141 TGTGGTGGCAAATTCAACTTC 57.549 42.857 0.00 0.00 0.00 3.01
184 185 3.387374 TGATGTGGTGGCAAATTCAACTT 59.613 39.130 0.00 0.00 0.00 2.66
185 186 2.964464 TGATGTGGTGGCAAATTCAACT 59.036 40.909 0.00 0.00 0.00 3.16
186 187 3.383620 TGATGTGGTGGCAAATTCAAC 57.616 42.857 0.00 0.00 0.00 3.18
187 188 3.494048 GGTTGATGTGGTGGCAAATTCAA 60.494 43.478 0.00 0.00 0.00 2.69
188 189 2.036992 GGTTGATGTGGTGGCAAATTCA 59.963 45.455 0.00 0.00 0.00 2.57
189 190 2.612721 GGGTTGATGTGGTGGCAAATTC 60.613 50.000 0.00 0.00 0.00 2.17
190 191 1.347378 GGGTTGATGTGGTGGCAAATT 59.653 47.619 0.00 0.00 0.00 1.82
191 192 0.975887 GGGTTGATGTGGTGGCAAAT 59.024 50.000 0.00 0.00 0.00 2.32
192 193 0.105760 AGGGTTGATGTGGTGGCAAA 60.106 50.000 0.00 0.00 0.00 3.68
193 194 0.827089 CAGGGTTGATGTGGTGGCAA 60.827 55.000 0.00 0.00 0.00 4.52
194 195 1.228521 CAGGGTTGATGTGGTGGCA 60.229 57.895 0.00 0.00 0.00 4.92
195 196 1.074775 TCAGGGTTGATGTGGTGGC 59.925 57.895 0.00 0.00 0.00 5.01
196 197 0.110295 TGTCAGGGTTGATGTGGTGG 59.890 55.000 0.00 0.00 35.39 4.61
197 198 1.814394 CATGTCAGGGTTGATGTGGTG 59.186 52.381 0.00 0.00 35.39 4.17
198 199 1.425066 ACATGTCAGGGTTGATGTGGT 59.575 47.619 0.00 0.00 35.39 4.16
199 200 1.814394 CACATGTCAGGGTTGATGTGG 59.186 52.381 0.00 0.00 39.21 4.17
200 201 1.814394 CCACATGTCAGGGTTGATGTG 59.186 52.381 0.00 0.00 41.09 3.21
201 202 1.272092 CCCACATGTCAGGGTTGATGT 60.272 52.381 12.26 0.00 40.34 3.06
202 203 1.466856 CCCACATGTCAGGGTTGATG 58.533 55.000 12.26 0.00 40.34 3.07
203 204 3.985410 CCCACATGTCAGGGTTGAT 57.015 52.632 12.26 0.00 40.34 2.57
209 210 2.268920 CGGGACCCACATGTCAGG 59.731 66.667 12.15 9.48 36.97 3.86
210 211 2.436646 GCGGGACCCACATGTCAG 60.437 66.667 12.15 0.00 36.97 3.51
211 212 2.601702 ATGCGGGACCCACATGTCA 61.602 57.895 13.46 0.00 36.97 3.58
212 213 2.114670 CATGCGGGACCCACATGTC 61.115 63.158 27.13 3.69 37.10 3.06
213 214 2.045045 CATGCGGGACCCACATGT 60.045 61.111 27.13 1.17 37.10 3.21
214 215 2.045045 ACATGCGGGACCCACATG 60.045 61.111 31.55 31.55 45.28 3.21
215 216 1.925285 ATGACATGCGGGACCCACAT 61.925 55.000 12.15 10.14 0.00 3.21
216 217 2.601702 ATGACATGCGGGACCCACA 61.602 57.895 12.15 7.69 0.00 4.17
217 218 2.114670 CATGACATGCGGGACCCAC 61.115 63.158 12.15 0.13 0.00 4.61
218 219 1.846712 TTCATGACATGCGGGACCCA 61.847 55.000 12.15 0.00 0.00 4.51
219 220 1.077787 TTCATGACATGCGGGACCC 60.078 57.895 10.76 0.00 0.00 4.46
220 221 0.676466 TGTTCATGACATGCGGGACC 60.676 55.000 10.76 0.00 32.00 4.46
221 222 2.853159 TGTTCATGACATGCGGGAC 58.147 52.632 10.76 7.21 32.00 4.46
229 230 6.460781 AGACGGTTTAAGTATGTTCATGACA 58.539 36.000 0.00 0.00 43.71 3.58
230 231 6.963049 AGACGGTTTAAGTATGTTCATGAC 57.037 37.500 0.00 0.00 0.00 3.06
231 232 8.928733 GTTTAGACGGTTTAAGTATGTTCATGA 58.071 33.333 0.00 0.00 0.00 3.07
232 233 8.932791 AGTTTAGACGGTTTAAGTATGTTCATG 58.067 33.333 0.00 0.00 0.00 3.07
233 234 8.932791 CAGTTTAGACGGTTTAAGTATGTTCAT 58.067 33.333 0.00 0.00 0.00 2.57
234 235 7.385752 CCAGTTTAGACGGTTTAAGTATGTTCA 59.614 37.037 0.00 0.00 0.00 3.18
235 236 7.386025 ACCAGTTTAGACGGTTTAAGTATGTTC 59.614 37.037 0.00 0.00 31.62 3.18
236 237 7.219322 ACCAGTTTAGACGGTTTAAGTATGTT 58.781 34.615 0.00 0.00 31.62 2.71
237 238 6.762333 ACCAGTTTAGACGGTTTAAGTATGT 58.238 36.000 0.00 0.00 31.62 2.29
238 239 6.869913 TGACCAGTTTAGACGGTTTAAGTATG 59.130 38.462 2.42 0.00 34.40 2.39
239 240 6.996509 TGACCAGTTTAGACGGTTTAAGTAT 58.003 36.000 2.42 0.00 34.40 2.12
240 241 6.403866 TGACCAGTTTAGACGGTTTAAGTA 57.596 37.500 2.42 0.00 34.40 2.24
241 242 5.280654 TGACCAGTTTAGACGGTTTAAGT 57.719 39.130 2.42 0.00 34.40 2.24
242 243 6.796705 AATGACCAGTTTAGACGGTTTAAG 57.203 37.500 2.42 0.00 34.40 1.85
243 244 8.316214 AGATAATGACCAGTTTAGACGGTTTAA 58.684 33.333 2.42 0.00 34.40 1.52
244 245 7.762615 CAGATAATGACCAGTTTAGACGGTTTA 59.237 37.037 2.42 0.30 34.40 2.01
245 246 6.594159 CAGATAATGACCAGTTTAGACGGTTT 59.406 38.462 2.42 0.00 34.40 3.27
246 247 6.070995 TCAGATAATGACCAGTTTAGACGGTT 60.071 38.462 2.42 0.00 34.40 4.44
247 248 5.421056 TCAGATAATGACCAGTTTAGACGGT 59.579 40.000 0.69 0.69 36.07 4.83
248 249 5.902681 TCAGATAATGACCAGTTTAGACGG 58.097 41.667 0.00 0.00 31.12 4.79
249 250 7.492669 ACATTCAGATAATGACCAGTTTAGACG 59.507 37.037 4.82 0.00 37.77 4.18
250 251 8.607459 CACATTCAGATAATGACCAGTTTAGAC 58.393 37.037 4.82 0.00 37.77 2.59
251 252 7.770433 CCACATTCAGATAATGACCAGTTTAGA 59.230 37.037 4.82 0.00 37.77 2.10
252 253 7.770433 TCCACATTCAGATAATGACCAGTTTAG 59.230 37.037 4.82 0.00 37.77 1.85
253 254 7.629157 TCCACATTCAGATAATGACCAGTTTA 58.371 34.615 4.82 0.00 37.77 2.01
254 255 6.484288 TCCACATTCAGATAATGACCAGTTT 58.516 36.000 4.82 0.00 37.77 2.66
255 256 6.065976 TCCACATTCAGATAATGACCAGTT 57.934 37.500 4.82 0.00 37.77 3.16
256 257 5.190528 ACTCCACATTCAGATAATGACCAGT 59.809 40.000 4.82 1.12 37.77 4.00
257 258 5.678583 ACTCCACATTCAGATAATGACCAG 58.321 41.667 4.82 0.60 37.77 4.00
258 259 5.698741 ACTCCACATTCAGATAATGACCA 57.301 39.130 4.82 0.00 37.77 4.02
259 260 7.396540 AAAACTCCACATTCAGATAATGACC 57.603 36.000 4.82 0.00 37.77 4.02
260 261 9.994432 CTAAAAACTCCACATTCAGATAATGAC 57.006 33.333 4.82 0.00 37.77 3.06
261 262 9.177608 CCTAAAAACTCCACATTCAGATAATGA 57.822 33.333 4.82 0.00 35.62 2.57
262 263 8.408601 CCCTAAAAACTCCACATTCAGATAATG 58.591 37.037 0.00 0.00 0.00 1.90
263 264 8.336235 TCCCTAAAAACTCCACATTCAGATAAT 58.664 33.333 0.00 0.00 0.00 1.28
264 265 7.610305 GTCCCTAAAAACTCCACATTCAGATAA 59.390 37.037 0.00 0.00 0.00 1.75
265 266 7.110155 GTCCCTAAAAACTCCACATTCAGATA 58.890 38.462 0.00 0.00 0.00 1.98
266 267 5.946377 GTCCCTAAAAACTCCACATTCAGAT 59.054 40.000 0.00 0.00 0.00 2.90
267 268 5.163141 TGTCCCTAAAAACTCCACATTCAGA 60.163 40.000 0.00 0.00 0.00 3.27
268 269 5.070001 TGTCCCTAAAAACTCCACATTCAG 58.930 41.667 0.00 0.00 0.00 3.02
269 270 5.055265 TGTCCCTAAAAACTCCACATTCA 57.945 39.130 0.00 0.00 0.00 2.57
270 271 6.399639 TTTGTCCCTAAAAACTCCACATTC 57.600 37.500 0.00 0.00 0.00 2.67
271 272 6.800072 TTTTGTCCCTAAAAACTCCACATT 57.200 33.333 0.00 0.00 0.00 2.71
272 273 6.800072 TTTTTGTCCCTAAAAACTCCACAT 57.200 33.333 0.00 0.00 35.32 3.21
273 274 6.800072 ATTTTTGTCCCTAAAAACTCCACA 57.200 33.333 0.00 0.00 40.94 4.17
274 275 9.602568 TTTTATTTTTGTCCCTAAAAACTCCAC 57.397 29.630 0.00 0.00 40.94 4.02
299 300 7.090953 TCGTTGACTGAAAACTACCATTTTT 57.909 32.000 0.00 0.00 31.90 1.94
300 301 6.687081 TCGTTGACTGAAAACTACCATTTT 57.313 33.333 0.00 0.00 34.46 1.82
301 302 6.877611 ATCGTTGACTGAAAACTACCATTT 57.122 33.333 0.00 0.00 0.00 2.32
302 303 7.359765 CGTTATCGTTGACTGAAAACTACCATT 60.360 37.037 0.00 0.00 0.00 3.16
303 304 6.090358 CGTTATCGTTGACTGAAAACTACCAT 59.910 38.462 0.00 0.00 0.00 3.55
304 305 5.403166 CGTTATCGTTGACTGAAAACTACCA 59.597 40.000 0.00 0.00 0.00 3.25
305 306 5.667156 GCGTTATCGTTGACTGAAAACTACC 60.667 44.000 0.00 0.00 39.49 3.18
306 307 5.303485 GCGTTATCGTTGACTGAAAACTAC 58.697 41.667 0.00 0.00 39.49 2.73
307 308 4.386652 GGCGTTATCGTTGACTGAAAACTA 59.613 41.667 0.00 0.00 39.49 2.24
308 309 3.185797 GGCGTTATCGTTGACTGAAAACT 59.814 43.478 0.00 0.00 39.49 2.66
309 310 3.185797 AGGCGTTATCGTTGACTGAAAAC 59.814 43.478 0.00 0.00 39.49 2.43
310 311 3.185594 CAGGCGTTATCGTTGACTGAAAA 59.814 43.478 0.00 0.00 39.49 2.29
311 312 2.734606 CAGGCGTTATCGTTGACTGAAA 59.265 45.455 0.00 0.00 39.49 2.69
312 313 2.029739 TCAGGCGTTATCGTTGACTGAA 60.030 45.455 0.00 0.00 39.49 3.02
313 314 1.542472 TCAGGCGTTATCGTTGACTGA 59.458 47.619 0.00 0.00 39.49 3.41
314 315 1.990799 TCAGGCGTTATCGTTGACTG 58.009 50.000 0.00 0.00 39.49 3.51
315 316 2.334838 GTTCAGGCGTTATCGTTGACT 58.665 47.619 0.00 0.00 39.49 3.41
316 317 1.058695 CGTTCAGGCGTTATCGTTGAC 59.941 52.381 0.00 0.00 39.49 3.18
317 318 1.336148 ACGTTCAGGCGTTATCGTTGA 60.336 47.619 0.00 0.00 43.04 3.18
318 319 1.065358 ACGTTCAGGCGTTATCGTTG 58.935 50.000 0.00 0.00 43.04 4.10
338 339 6.488769 TTAGGACGAAAATCTATAGCCCAA 57.511 37.500 0.00 0.00 0.00 4.12
339 340 6.126997 TGTTTAGGACGAAAATCTATAGCCCA 60.127 38.462 0.00 0.00 0.00 5.36
359 360 1.000827 CAACGGCAGGCAACATGTTTA 60.001 47.619 8.77 0.00 41.41 2.01
360 361 0.249405 CAACGGCAGGCAACATGTTT 60.249 50.000 8.77 0.00 41.41 2.83
397 398 3.077359 GTGTCTCTGCCAAGTGCTTTAT 58.923 45.455 0.00 0.00 42.00 1.40
423 424 0.039074 AGCGAACGAGTTCTCACTGG 60.039 55.000 13.27 0.00 37.44 4.00
457 458 1.314534 TGGATAAGGTCGCGTTCGGA 61.315 55.000 5.77 0.00 36.13 4.55
500 501 1.423161 GAAGATGGGGGAATGGAGAGG 59.577 57.143 0.00 0.00 0.00 3.69
532 533 4.988716 ACGGCGGTGGAGAGGTGA 62.989 66.667 13.24 0.00 0.00 4.02
610 611 3.131396 CAAAATAGGATTCGCCGTAGCT 58.869 45.455 0.00 0.00 43.43 3.32
614 615 1.400494 GCACAAAATAGGATTCGCCGT 59.600 47.619 0.00 0.00 43.43 5.68
689 691 2.043450 CCTCGCCTCCAGGACTCT 60.043 66.667 0.00 0.00 37.39 3.24
760 763 4.752879 CCGTCCCATTGTCCGCGT 62.753 66.667 4.92 0.00 0.00 6.01
770 773 2.833582 GATCTCCTCGCCGTCCCA 60.834 66.667 0.00 0.00 0.00 4.37
811 814 3.706373 TTGTCAGAGGAGCGGCCC 61.706 66.667 0.00 0.00 37.37 5.80
873 881 1.303317 ACCTTGCCGTGCCCTTTAG 60.303 57.895 0.00 0.00 0.00 1.85
874 882 1.602323 CACCTTGCCGTGCCCTTTA 60.602 57.895 0.00 0.00 0.00 1.85
929 937 2.361357 CTCCCCTCCGTCGTCAGT 60.361 66.667 0.00 0.00 0.00 3.41
973 989 1.740043 GACGACAATGTAGACGCCGC 61.740 60.000 0.00 0.00 0.00 6.53
986 1002 0.869880 CGCCATCGCTTATGACGACA 60.870 55.000 0.00 0.00 43.39 4.35
1090 1107 1.162181 CCGACGGCTGCATCATTGAT 61.162 55.000 0.00 0.00 0.00 2.57
1093 1110 3.204827 GCCGACGGCTGCATCATT 61.205 61.111 31.30 0.00 46.69 2.57
1201 1218 3.717294 CCTTGTAGGGGCAGCGGT 61.717 66.667 0.00 0.00 0.00 5.68
1297 1314 3.189080 CCGACTGATGATAGAGAGCTCAG 59.811 52.174 17.77 4.32 39.35 3.35
1408 1430 2.905415 AGGGCATTCATCTTCCACAA 57.095 45.000 0.00 0.00 0.00 3.33
1606 1634 3.492421 AACTACAATTGCCATGCTTCG 57.508 42.857 5.05 0.00 0.00 3.79
1687 1718 5.179452 AGTATATATTGACATGGCCCCAC 57.821 43.478 0.00 0.00 0.00 4.61
1859 1891 5.189659 ACTAGTGACACTCTGTTTGTCTC 57.810 43.478 12.39 8.35 43.30 3.36
2004 2037 1.200519 TCGGGTGCTAAGCTAATGGT 58.799 50.000 0.00 0.00 0.00 3.55
2050 2083 8.607459 GTCAAAGGAACATGTATAAGTCATGAG 58.393 37.037 0.00 0.00 43.47 2.90
2164 2197 3.830755 TCTACCTTTGGAGACACCTGTAC 59.169 47.826 0.00 0.00 42.67 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.