Multiple sequence alignment - TraesCS2A01G039700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G039700 chr2A 100.000 5248 0 0 1 5248 16491549 16486302 0.000000e+00 9692.0
1 TraesCS2A01G039700 chr2A 95.745 47 2 0 2644 2690 137747035 137747081 5.640000e-10 76.8
2 TraesCS2A01G039700 chr2D 89.944 2675 176 44 8 2652 14121326 14118715 0.000000e+00 3363.0
3 TraesCS2A01G039700 chr2D 89.130 1932 126 36 3352 5248 14118467 14116585 0.000000e+00 2327.0
4 TraesCS2A01G039700 chr2D 87.649 251 20 6 439 681 14122172 14121925 1.110000e-71 281.0
5 TraesCS2A01G039700 chr2D 93.143 175 7 2 2704 2874 14118715 14118542 8.720000e-63 252.0
6 TraesCS2A01G039700 chr2B 87.960 2201 152 47 514 2652 25740041 25737892 0.000000e+00 2492.0
7 TraesCS2A01G039700 chr2B 94.587 1053 45 7 3303 4351 25737184 25736140 0.000000e+00 1618.0
8 TraesCS2A01G039700 chr2B 88.966 716 55 8 2704 3407 25737892 25737189 0.000000e+00 863.0
9 TraesCS2A01G039700 chr2B 88.347 369 36 6 1872 2238 25609635 25609272 2.240000e-118 436.0
10 TraesCS2A01G039700 chr2B 90.274 329 18 5 1398 1714 25609959 25609633 8.130000e-113 418.0
11 TraesCS2A01G039700 chr5B 81.935 310 47 7 126 432 549460528 549460225 2.430000e-63 254.0
12 TraesCS2A01G039700 chr5B 81.290 310 49 7 126 432 549426872 549426569 5.250000e-60 243.0
13 TraesCS2A01G039700 chr5B 91.925 161 13 0 1717 1877 101277747 101277587 5.290000e-55 226.0
14 TraesCS2A01G039700 chr5B 91.824 159 13 0 1717 1875 463372164 463372322 6.840000e-54 222.0
15 TraesCS2A01G039700 chr5B 90.476 168 16 0 1708 1875 643739597 643739764 6.840000e-54 222.0
16 TraesCS2A01G039700 chr1B 81.470 313 48 8 125 432 487686592 487686899 1.130000e-61 248.0
17 TraesCS2A01G039700 chr1B 81.290 310 49 7 126 432 74506605 74506302 5.250000e-60 243.0
18 TraesCS2A01G039700 chrUn 81.150 313 46 11 125 432 297719348 297719652 6.790000e-59 239.0
19 TraesCS2A01G039700 chrUn 81.150 313 46 11 125 432 397425502 397425198 6.790000e-59 239.0
20 TraesCS2A01G039700 chr4A 80.707 311 52 6 125 432 642916662 642916357 8.790000e-58 235.0
21 TraesCS2A01G039700 chr4A 91.071 56 4 1 2651 2705 683484685 683484630 2.030000e-09 75.0
22 TraesCS2A01G039700 chr4A 84.507 71 9 1 4556 4624 446769973 446770043 9.430000e-08 69.4
23 TraesCS2A01G039700 chr3D 80.743 296 50 4 137 430 523388768 523388478 1.900000e-54 224.0
24 TraesCS2A01G039700 chr3D 100.000 28 0 0 76 103 285014483 285014456 9.000000e-03 52.8
25 TraesCS2A01G039700 chr7B 91.824 159 13 0 1717 1875 587718140 587718298 6.840000e-54 222.0
26 TraesCS2A01G039700 chr7B 100.000 28 0 0 79 106 143179556 143179583 9.000000e-03 52.8
27 TraesCS2A01G039700 chr6B 91.824 159 13 0 1717 1875 583112495 583112337 6.840000e-54 222.0
28 TraesCS2A01G039700 chr6B 95.652 46 2 0 2648 2693 199016001 199015956 2.030000e-09 75.0
29 TraesCS2A01G039700 chr3B 91.824 159 13 0 1717 1875 740403542 740403700 6.840000e-54 222.0
30 TraesCS2A01G039700 chr3B 91.824 159 13 0 1717 1875 789421239 789421397 6.840000e-54 222.0
31 TraesCS2A01G039700 chr4B 91.379 58 4 1 2634 2690 570801824 570801881 1.570000e-10 78.7
32 TraesCS2A01G039700 chr6D 92.308 52 4 0 2639 2690 73831479 73831530 2.030000e-09 75.0
33 TraesCS2A01G039700 chr6D 92.308 52 4 0 2639 2690 256246963 256247014 2.030000e-09 75.0
34 TraesCS2A01G039700 chr3A 88.710 62 6 1 2630 2690 296902704 296902765 2.030000e-09 75.0
35 TraesCS2A01G039700 chr1A 88.710 62 6 1 2630 2690 176412933 176412994 2.030000e-09 75.0
36 TraesCS2A01G039700 chr5D 87.097 62 4 2 2651 2712 196346975 196346918 3.390000e-07 67.6
37 TraesCS2A01G039700 chr6A 84.286 70 8 2 4556 4623 51415594 51415662 1.220000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G039700 chr2A 16486302 16491549 5247 True 9692.000000 9692 100.000000 1 5248 1 chr2A.!!$R1 5247
1 TraesCS2A01G039700 chr2D 14116585 14122172 5587 True 1555.750000 3363 89.966500 8 5248 4 chr2D.!!$R1 5240
2 TraesCS2A01G039700 chr2B 25736140 25740041 3901 True 1657.666667 2492 90.504333 514 4351 3 chr2B.!!$R2 3837
3 TraesCS2A01G039700 chr2B 25609272 25609959 687 True 427.000000 436 89.310500 1398 2238 2 chr2B.!!$R1 840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
489 1333 0.110238 CGCCACGGATCAACACAAAG 60.110 55.0 0.00 0.0 0.0 2.77 F
827 1681 0.110486 CCATTATTCTCCCCACCCCG 59.890 60.0 0.00 0.0 0.0 5.73 F
1178 2043 0.171455 CTCGTCGTGAAAGAGGAGGG 59.829 60.0 7.73 0.0 44.7 4.30 F
2925 3852 0.453793 CCTTGTGTGTTGTTGCGGAA 59.546 50.0 0.00 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 2811 1.024579 AGAAATAAGGGTGCGGTGCG 61.025 55.0 0.00 0.00 0.00 5.34 R
2684 3607 0.989602 TCCTCTCTCCGTCCAGTACA 59.010 55.0 0.00 0.00 0.00 2.90 R
2941 3868 2.159747 CCATGCATTCGATGTAGCATCG 60.160 50.0 21.17 21.17 45.14 3.84 R
4907 6001 0.394352 GTGCTTCCATGGTTCCCGAT 60.394 55.0 12.58 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 885 1.192428 AACTACTCCATCCGTCCCAC 58.808 55.000 0.00 0.00 0.00 4.61
57 897 4.665833 TCCGTCCCACAATATAAGAGTG 57.334 45.455 0.00 0.00 0.00 3.51
64 904 5.310409 CCACAATATAAGAGTGGTCCCAT 57.690 43.478 11.45 0.00 45.95 4.00
67 907 7.461749 CCACAATATAAGAGTGGTCCCATAAT 58.538 38.462 11.45 0.00 45.95 1.28
75 915 7.560796 AAGAGTGGTCCCATAATATAAGAGG 57.439 40.000 0.00 0.00 0.00 3.69
76 916 6.635021 AGAGTGGTCCCATAATATAAGAGGT 58.365 40.000 0.00 0.00 0.00 3.85
77 917 6.498651 AGAGTGGTCCCATAATATAAGAGGTG 59.501 42.308 0.00 0.00 0.00 4.00
93 933 6.989155 AAGAGGTGTTATATTATGGGACGA 57.011 37.500 0.00 0.00 0.00 4.20
106 946 4.891992 ATGGGACGAAGGGAGTATAATG 57.108 45.455 0.00 0.00 0.00 1.90
108 948 4.035112 TGGGACGAAGGGAGTATAATGTT 58.965 43.478 0.00 0.00 0.00 2.71
109 949 4.141801 TGGGACGAAGGGAGTATAATGTTG 60.142 45.833 0.00 0.00 0.00 3.33
110 950 4.141779 GGGACGAAGGGAGTATAATGTTGT 60.142 45.833 0.00 0.00 0.00 3.32
111 951 4.809426 GGACGAAGGGAGTATAATGTTGTG 59.191 45.833 0.00 0.00 0.00 3.33
163 1003 6.757897 CACCCAAAGTGCATCTTAAATCTA 57.242 37.500 0.00 0.00 40.28 1.98
164 1004 7.156876 CACCCAAAGTGCATCTTAAATCTAA 57.843 36.000 0.00 0.00 40.28 2.10
191 1031 1.484038 TGAGCAAAACAAAGGCCAGT 58.516 45.000 5.01 0.00 0.00 4.00
197 1037 3.494251 GCAAAACAAAGGCCAGTACAATG 59.506 43.478 5.01 0.00 0.00 2.82
207 1047 3.877508 GGCCAGTACAATGGATAGACAAC 59.122 47.826 0.00 0.00 43.57 3.32
209 1049 4.811557 GCCAGTACAATGGATAGACAACTC 59.188 45.833 5.35 0.00 43.57 3.01
212 1052 5.744345 CAGTACAATGGATAGACAACTCGAC 59.256 44.000 0.00 0.00 0.00 4.20
215 1055 2.913777 TGGATAGACAACTCGACGTG 57.086 50.000 0.00 0.00 0.00 4.49
218 1058 2.163010 GGATAGACAACTCGACGTGGAA 59.837 50.000 0.86 0.00 0.00 3.53
220 1060 0.742505 AGACAACTCGACGTGGAACA 59.257 50.000 0.86 0.00 35.74 3.18
270 1110 6.013554 AGAGCATACTAGTCTTCTTCCTCT 57.986 41.667 0.00 0.00 0.00 3.69
273 1113 6.431722 AGCATACTAGTCTTCTTCCTCTTCT 58.568 40.000 0.00 0.00 0.00 2.85
278 1118 5.944007 ACTAGTCTTCTTCCTCTTCTGACTC 59.056 44.000 0.00 0.00 35.36 3.36
281 1121 5.779771 AGTCTTCTTCCTCTTCTGACTCAAT 59.220 40.000 0.00 0.00 0.00 2.57
293 1133 2.125552 CTCAATGTCGCCTGCCGA 60.126 61.111 0.00 0.00 45.15 5.54
306 1146 3.181501 CGCCTGCCGAAGATTGAAAAATA 60.182 43.478 0.00 0.00 40.02 1.40
307 1147 4.498009 CGCCTGCCGAAGATTGAAAAATAT 60.498 41.667 0.00 0.00 40.02 1.28
309 1149 6.568462 CGCCTGCCGAAGATTGAAAAATATAT 60.568 38.462 0.00 0.00 40.02 0.86
310 1150 6.803807 GCCTGCCGAAGATTGAAAAATATATC 59.196 38.462 0.00 0.00 0.00 1.63
348 1188 2.818751 AAAGGTGACACCCAAGAACA 57.181 45.000 21.32 0.00 39.75 3.18
352 1192 0.822121 GTGACACCCAAGAACACCCC 60.822 60.000 0.00 0.00 0.00 4.95
354 1194 2.282180 CACCCAAGAACACCCCCG 60.282 66.667 0.00 0.00 0.00 5.73
355 1195 3.576259 ACCCAAGAACACCCCCGG 61.576 66.667 0.00 0.00 0.00 5.73
357 1197 4.278513 CCAAGAACACCCCCGGCA 62.279 66.667 0.00 0.00 0.00 5.69
359 1199 2.035626 AAGAACACCCCCGGCATG 59.964 61.111 0.00 0.00 0.00 4.06
369 1209 2.440065 CCGGCATGCCAGGCTTTA 60.440 61.111 34.93 0.00 35.37 1.85
378 1221 1.794222 CCAGGCTTTAAAGACCGCG 59.206 57.895 17.71 13.41 33.27 6.46
394 1237 3.536917 CGATAGCCACTCGCCCCA 61.537 66.667 0.00 0.00 38.78 4.96
404 1247 1.300233 CTCGCCCCATAAGACGAGC 60.300 63.158 0.00 0.00 44.56 5.03
406 1249 0.466739 TCGCCCCATAAGACGAGCTA 60.467 55.000 0.00 0.00 0.00 3.32
412 1255 5.061179 GCCCCATAAGACGAGCTATAAAAA 58.939 41.667 0.00 0.00 0.00 1.94
424 1267 7.234384 ACGAGCTATAAAAATCGTTGAAACAG 58.766 34.615 0.00 0.00 45.39 3.16
444 1288 2.970379 ATCGGCATCACCCAGCACA 61.970 57.895 0.00 0.00 33.26 4.57
445 1289 2.881539 ATCGGCATCACCCAGCACAG 62.882 60.000 0.00 0.00 33.26 3.66
451 1295 0.773644 ATCACCCAGCACAGAGGTTT 59.226 50.000 0.00 0.00 0.00 3.27
461 1305 2.893637 CACAGAGGTTTGGAGATACCG 58.106 52.381 0.00 0.00 42.61 4.02
463 1307 0.831307 AGAGGTTTGGAGATACCGGC 59.169 55.000 0.00 0.00 42.61 6.13
465 1309 1.523032 GGTTTGGAGATACCGGCCG 60.523 63.158 21.04 21.04 42.61 6.13
489 1333 0.110238 CGCCACGGATCAACACAAAG 60.110 55.000 0.00 0.00 0.00 2.77
494 1338 2.226437 CACGGATCAACACAAAGGAAGG 59.774 50.000 0.00 0.00 0.00 3.46
495 1339 1.200020 CGGATCAACACAAAGGAAGGC 59.800 52.381 0.00 0.00 0.00 4.35
506 1350 0.529378 AAGGAAGGCGTCGTAATCGT 59.471 50.000 0.00 0.00 38.33 3.73
514 1358 1.688793 CGTCGTAATCGTCACACCAA 58.311 50.000 0.00 0.00 38.33 3.67
515 1359 2.052891 CGTCGTAATCGTCACACCAAA 58.947 47.619 0.00 0.00 38.33 3.28
516 1360 2.472115 CGTCGTAATCGTCACACCAAAA 59.528 45.455 0.00 0.00 38.33 2.44
517 1361 3.421312 CGTCGTAATCGTCACACCAAAAG 60.421 47.826 0.00 0.00 38.33 2.27
518 1362 2.477375 TCGTAATCGTCACACCAAAAGC 59.523 45.455 0.00 0.00 38.33 3.51
519 1363 2.412325 CGTAATCGTCACACCAAAAGCC 60.412 50.000 0.00 0.00 0.00 4.35
520 1364 1.686355 AATCGTCACACCAAAAGCCA 58.314 45.000 0.00 0.00 0.00 4.75
521 1365 1.238439 ATCGTCACACCAAAAGCCAG 58.762 50.000 0.00 0.00 0.00 4.85
522 1366 1.008538 CGTCACACCAAAAGCCAGC 60.009 57.895 0.00 0.00 0.00 4.85
523 1367 1.363807 GTCACACCAAAAGCCAGCC 59.636 57.895 0.00 0.00 0.00 4.85
578 1422 1.990160 TTGTTTCTGGGTCCGCCACT 61.990 55.000 0.00 0.00 36.17 4.00
603 1447 1.296056 CGTCTCGGCCGGTTCAAAAT 61.296 55.000 27.83 0.00 0.00 1.82
604 1448 0.446616 GTCTCGGCCGGTTCAAAATC 59.553 55.000 27.83 2.21 0.00 2.17
716 1565 1.064979 ACAAACCCAACTCGACCACTT 60.065 47.619 0.00 0.00 0.00 3.16
767 1616 1.135373 TCTCCTCGCGACAATTGTCTC 60.135 52.381 30.45 23.98 42.66 3.36
774 1624 0.982673 CGACAATTGTCTCGACCGAC 59.017 55.000 30.45 7.42 42.66 4.79
827 1681 0.110486 CCATTATTCTCCCCACCCCG 59.890 60.000 0.00 0.00 0.00 5.73
828 1682 1.136828 CATTATTCTCCCCACCCCGA 58.863 55.000 0.00 0.00 0.00 5.14
829 1683 1.137697 ATTATTCTCCCCACCCCGAC 58.862 55.000 0.00 0.00 0.00 4.79
830 1684 0.252789 TTATTCTCCCCACCCCGACA 60.253 55.000 0.00 0.00 0.00 4.35
831 1685 0.252789 TATTCTCCCCACCCCGACAA 60.253 55.000 0.00 0.00 0.00 3.18
832 1686 1.848886 ATTCTCCCCACCCCGACAAC 61.849 60.000 0.00 0.00 0.00 3.32
926 1786 1.661821 CGTAGCCGCCATAGAGCAC 60.662 63.158 0.00 0.00 0.00 4.40
928 1788 1.760480 TAGCCGCCATAGAGCACCA 60.760 57.895 0.00 0.00 0.00 4.17
932 1792 1.447217 CGCCATAGAGCACCATCCA 59.553 57.895 0.00 0.00 0.00 3.41
936 1796 2.568956 GCCATAGAGCACCATCCATCTA 59.431 50.000 0.00 0.00 0.00 1.98
937 1797 3.618507 GCCATAGAGCACCATCCATCTAC 60.619 52.174 0.00 0.00 0.00 2.59
973 1835 4.457496 TGGCTACCTCGCTGCTGC 62.457 66.667 5.34 5.34 0.00 5.25
974 1836 4.154347 GGCTACCTCGCTGCTGCT 62.154 66.667 14.03 0.00 36.97 4.24
975 1837 2.786495 GGCTACCTCGCTGCTGCTA 61.786 63.158 14.03 1.49 36.97 3.49
1178 2043 0.171455 CTCGTCGTGAAAGAGGAGGG 59.829 60.000 7.73 0.00 44.70 4.30
1184 2049 1.290134 GTGAAAGAGGAGGGGGTGAT 58.710 55.000 0.00 0.00 0.00 3.06
1257 2131 1.379576 GGAGCAGGAAAGGCAGCAT 60.380 57.895 0.00 0.00 0.00 3.79
1280 2154 3.993234 GCGGCAGATCGTGATGCG 61.993 66.667 0.00 0.00 43.49 4.73
1320 2198 7.011482 CAGGTTCGTCTTTGCTTTAGCTATATT 59.989 37.037 3.10 0.00 42.66 1.28
1407 2285 3.921119 TCTGCATAGCTTGTTTTGTGG 57.079 42.857 0.00 0.00 0.00 4.17
1423 2301 6.601613 TGTTTTGTGGTTGATAAGAGTGAACT 59.398 34.615 0.00 0.00 0.00 3.01
1430 2308 6.483307 TGGTTGATAAGAGTGAACTTTGACTG 59.517 38.462 0.00 0.00 0.00 3.51
1440 2318 5.525378 AGTGAACTTTGACTGATCACTTGTC 59.475 40.000 6.63 6.63 46.22 3.18
1461 2339 3.055458 TCATCCCGTGATTTGTGCTAAGA 60.055 43.478 0.00 0.00 0.00 2.10
1462 2340 3.410631 TCCCGTGATTTGTGCTAAGAA 57.589 42.857 0.00 0.00 0.00 2.52
1469 2347 6.074888 CCGTGATTTGTGCTAAGAAAAACTTG 60.075 38.462 0.00 0.00 39.38 3.16
1491 2369 1.333177 TAACACACCCATTTGGCCAC 58.667 50.000 3.88 0.00 37.83 5.01
1502 2380 4.399303 CCCATTTGGCCACTTCTTAGTTAG 59.601 45.833 3.88 0.00 30.26 2.34
1523 2401 3.976654 AGATGACCCACACCTAGCATTAT 59.023 43.478 0.00 0.00 0.00 1.28
1571 2449 1.435515 GCTGCGTCTAGACAGGGAG 59.564 63.158 22.37 17.09 34.38 4.30
1624 2510 4.142004 GCTTTACTTATCTCCGGTTCTCCA 60.142 45.833 0.00 0.00 0.00 3.86
1695 2584 5.715070 TGTTACCCAAAACACAACTCTTTG 58.285 37.500 0.00 0.00 34.50 2.77
1714 2605 6.228258 TCTTTGTGTCTTCCACTTGTATACC 58.772 40.000 0.00 0.00 44.81 2.73
1755 2646 6.940298 TGTAAGTCTTTTTAGGGATTCCACTG 59.060 38.462 4.80 0.00 34.83 3.66
1768 2659 5.408604 GGGATTCCACTGCAAACTATATACG 59.591 44.000 4.80 0.00 0.00 3.06
1769 2660 5.989777 GGATTCCACTGCAAACTATATACGT 59.010 40.000 0.00 0.00 0.00 3.57
1869 2761 6.779860 TGACTTATATTTAGGAATGGAGGGC 58.220 40.000 0.00 0.00 0.00 5.19
1915 2807 5.745312 ATCTCACTTGTGGATGTAGAACA 57.255 39.130 0.64 0.00 0.00 3.18
1916 2808 5.745312 TCTCACTTGTGGATGTAGAACAT 57.255 39.130 0.64 0.00 42.43 2.71
1918 2810 6.631016 TCTCACTTGTGGATGTAGAACATAC 58.369 40.000 0.64 0.00 39.27 2.39
1919 2811 5.730550 TCACTTGTGGATGTAGAACATACC 58.269 41.667 0.00 1.83 38.69 2.73
1920 2812 4.566759 CACTTGTGGATGTAGAACATACCG 59.433 45.833 0.00 0.00 38.69 4.02
1921 2813 3.173668 TGTGGATGTAGAACATACCGC 57.826 47.619 0.00 7.24 38.69 5.68
1937 2832 1.427819 CGCACCGCACCCTTATTTC 59.572 57.895 0.00 0.00 0.00 2.17
1945 2841 4.828387 ACCGCACCCTTATTTCTTTTTACA 59.172 37.500 0.00 0.00 0.00 2.41
2000 2900 8.379428 AGACATATATAGCATTATGGGTGTCA 57.621 34.615 0.00 0.00 32.89 3.58
2495 3418 7.649533 TTAGCCATCATGTCTTGATCAAATT 57.350 32.000 9.88 0.00 43.40 1.82
2507 3430 7.389330 TGTCTTGATCAAATTTAGCCGAAGTAA 59.611 33.333 9.88 0.00 0.00 2.24
2529 3452 3.186283 TGGTAGGTGTGGTTGTATCCAT 58.814 45.455 0.00 0.00 39.81 3.41
2530 3453 3.589735 TGGTAGGTGTGGTTGTATCCATT 59.410 43.478 0.00 0.00 39.81 3.16
2531 3454 4.196971 GGTAGGTGTGGTTGTATCCATTC 58.803 47.826 0.00 0.00 39.81 2.67
2534 3457 2.752903 GGTGTGGTTGTATCCATTCCAC 59.247 50.000 5.80 5.80 41.85 4.02
2535 3458 2.418628 GTGTGGTTGTATCCATTCCACG 59.581 50.000 0.00 0.00 43.13 4.94
2536 3459 2.014128 GTGGTTGTATCCATTCCACGG 58.986 52.381 0.00 0.00 39.81 4.94
2537 3460 1.631388 TGGTTGTATCCATTCCACGGT 59.369 47.619 0.00 0.00 31.96 4.83
2538 3461 2.040545 TGGTTGTATCCATTCCACGGTT 59.959 45.455 0.00 0.00 31.96 4.44
2629 3552 7.916914 TTAATACAAAAGGAGTTAGCACCTC 57.083 36.000 0.00 0.00 34.53 3.85
2651 3574 6.940298 CCTCCTTCACCATTGTTTAAGAGTTA 59.060 38.462 0.00 0.00 0.00 2.24
2652 3575 7.094762 CCTCCTTCACCATTGTTTAAGAGTTAC 60.095 40.741 0.00 0.00 0.00 2.50
2653 3576 7.514721 TCCTTCACCATTGTTTAAGAGTTACT 58.485 34.615 0.00 0.00 0.00 2.24
2654 3577 7.660208 TCCTTCACCATTGTTTAAGAGTTACTC 59.340 37.037 3.85 3.85 0.00 2.59
2655 3578 7.094762 CCTTCACCATTGTTTAAGAGTTACTCC 60.095 40.741 8.96 0.00 0.00 3.85
2656 3579 6.235664 TCACCATTGTTTAAGAGTTACTCCC 58.764 40.000 8.96 0.00 0.00 4.30
2657 3580 6.043938 TCACCATTGTTTAAGAGTTACTCCCT 59.956 38.462 8.96 0.00 0.00 4.20
2658 3581 6.371825 CACCATTGTTTAAGAGTTACTCCCTC 59.628 42.308 8.96 0.00 0.00 4.30
2659 3582 6.272558 ACCATTGTTTAAGAGTTACTCCCTCT 59.727 38.462 8.96 0.00 40.99 3.69
2660 3583 6.595716 CCATTGTTTAAGAGTTACTCCCTCTG 59.404 42.308 8.96 0.00 39.22 3.35
2661 3584 6.742559 TTGTTTAAGAGTTACTCCCTCTGT 57.257 37.500 8.96 0.00 39.22 3.41
2662 3585 6.342338 TGTTTAAGAGTTACTCCCTCTGTC 57.658 41.667 8.96 0.00 39.22 3.51
2663 3586 5.245526 TGTTTAAGAGTTACTCCCTCTGTCC 59.754 44.000 8.96 0.00 39.22 4.02
2664 3587 2.535836 AGAGTTACTCCCTCTGTCCC 57.464 55.000 8.96 0.00 37.88 4.46
2665 3588 1.717077 AGAGTTACTCCCTCTGTCCCA 59.283 52.381 8.96 0.00 37.88 4.37
2666 3589 2.111972 AGAGTTACTCCCTCTGTCCCAA 59.888 50.000 8.96 0.00 37.88 4.12
2667 3590 2.904434 GAGTTACTCCCTCTGTCCCAAA 59.096 50.000 0.00 0.00 0.00 3.28
2668 3591 3.323775 AGTTACTCCCTCTGTCCCAAAA 58.676 45.455 0.00 0.00 0.00 2.44
2669 3592 3.916989 AGTTACTCCCTCTGTCCCAAAAT 59.083 43.478 0.00 0.00 0.00 1.82
2670 3593 5.098663 AGTTACTCCCTCTGTCCCAAAATA 58.901 41.667 0.00 0.00 0.00 1.40
2671 3594 5.550403 AGTTACTCCCTCTGTCCCAAAATAA 59.450 40.000 0.00 0.00 0.00 1.40
2672 3595 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
2673 3596 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
2674 3597 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
2675 3598 3.913799 TCCCTCTGTCCCAAAATAAGTGA 59.086 43.478 0.00 0.00 0.00 3.41
2676 3599 4.010349 CCCTCTGTCCCAAAATAAGTGAC 58.990 47.826 0.00 0.00 0.00 3.67
2677 3600 4.263506 CCCTCTGTCCCAAAATAAGTGACT 60.264 45.833 0.00 0.00 0.00 3.41
2678 3601 4.938226 CCTCTGTCCCAAAATAAGTGACTC 59.062 45.833 0.00 0.00 0.00 3.36
2679 3602 5.513094 CCTCTGTCCCAAAATAAGTGACTCA 60.513 44.000 0.00 0.00 0.00 3.41
2680 3603 5.935945 TCTGTCCCAAAATAAGTGACTCAA 58.064 37.500 0.00 0.00 0.00 3.02
2681 3604 5.763204 TCTGTCCCAAAATAAGTGACTCAAC 59.237 40.000 0.00 0.00 0.00 3.18
2682 3605 5.690865 TGTCCCAAAATAAGTGACTCAACT 58.309 37.500 0.00 0.00 0.00 3.16
2683 3606 6.126409 TGTCCCAAAATAAGTGACTCAACTT 58.874 36.000 0.00 0.00 42.89 2.66
2684 3607 6.605594 TGTCCCAAAATAAGTGACTCAACTTT 59.394 34.615 0.00 0.00 40.77 2.66
2685 3608 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2686 3609 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2687 3610 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2688 3611 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2689 3612 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2690 3613 9.438291 CAAAATAAGTGACTCAACTTTGTACTG 57.562 33.333 0.00 0.00 40.77 2.74
2691 3614 7.730364 AATAAGTGACTCAACTTTGTACTGG 57.270 36.000 0.00 0.00 40.77 4.00
2692 3615 5.353394 AAGTGACTCAACTTTGTACTGGA 57.647 39.130 0.00 0.00 37.05 3.86
2693 3616 4.694339 AGTGACTCAACTTTGTACTGGAC 58.306 43.478 0.00 0.00 0.00 4.02
2694 3617 3.489785 GTGACTCAACTTTGTACTGGACG 59.510 47.826 0.00 0.00 0.00 4.79
2695 3618 3.057734 GACTCAACTTTGTACTGGACGG 58.942 50.000 0.00 0.00 0.00 4.79
2696 3619 2.696707 ACTCAACTTTGTACTGGACGGA 59.303 45.455 0.00 0.00 0.00 4.69
2697 3620 3.243771 ACTCAACTTTGTACTGGACGGAG 60.244 47.826 0.00 0.00 0.00 4.63
2698 3621 2.960384 TCAACTTTGTACTGGACGGAGA 59.040 45.455 0.00 0.00 0.00 3.71
2699 3622 3.005472 TCAACTTTGTACTGGACGGAGAG 59.995 47.826 0.00 0.00 0.00 3.20
2700 3623 2.872732 ACTTTGTACTGGACGGAGAGA 58.127 47.619 0.00 0.00 0.00 3.10
2701 3624 2.820787 ACTTTGTACTGGACGGAGAGAG 59.179 50.000 0.00 0.00 0.00 3.20
2702 3625 1.835494 TTGTACTGGACGGAGAGAGG 58.165 55.000 0.00 0.00 0.00 3.69
2717 3640 5.302059 CGGAGAGAGGATTATTGTTCTACCA 59.698 44.000 0.00 0.00 0.00 3.25
2761 3684 2.165167 AGAATGTGAAGCACCATGTGG 58.835 47.619 0.00 0.00 42.17 4.17
2799 3722 3.354089 AGATGCCAACAAAAACAGACG 57.646 42.857 0.00 0.00 0.00 4.18
2829 3756 9.213819 CAAACAATCATAATACTTCACATGACG 57.786 33.333 0.00 0.00 30.64 4.35
2921 3848 1.039856 ATCCCCTTGTGTGTTGTTGC 58.960 50.000 0.00 0.00 0.00 4.17
2925 3852 0.453793 CCTTGTGTGTTGTTGCGGAA 59.546 50.000 0.00 0.00 0.00 4.30
2931 3858 4.938080 TGTGTGTTGTTGCGGAAATAAAT 58.062 34.783 0.00 0.00 0.00 1.40
2941 3868 8.627487 TGTTGCGGAAATAAATGAATAATGTC 57.373 30.769 0.00 0.00 0.00 3.06
2965 3892 1.532868 GCTACATCGAATGCATGGGAC 59.467 52.381 0.00 0.00 0.00 4.46
2970 3897 0.904649 TCGAATGCATGGGACTGAGT 59.095 50.000 0.00 0.00 0.00 3.41
2972 3899 2.086869 CGAATGCATGGGACTGAGTTT 58.913 47.619 0.00 0.00 0.00 2.66
2973 3900 2.096496 CGAATGCATGGGACTGAGTTTC 59.904 50.000 0.00 0.00 0.00 2.78
2974 3901 1.742761 ATGCATGGGACTGAGTTTCG 58.257 50.000 0.00 0.00 0.00 3.46
2978 3905 2.941415 GCATGGGACTGAGTTTCGGAAT 60.941 50.000 0.00 0.00 0.00 3.01
3003 3930 6.662414 TTTTAGAACAGCATCGAATACAGG 57.338 37.500 0.00 0.00 0.00 4.00
3014 3941 5.382303 CATCGAATACAGGTGAACACAAAC 58.618 41.667 7.25 0.00 0.00 2.93
3015 3942 4.699637 TCGAATACAGGTGAACACAAACT 58.300 39.130 7.25 0.00 0.00 2.66
3028 3955 0.859232 ACAAACTCATCGACGTGTGC 59.141 50.000 0.00 0.00 0.00 4.57
3029 3956 1.139989 CAAACTCATCGACGTGTGCT 58.860 50.000 0.00 0.00 0.00 4.40
3051 3978 7.970061 GTGCTCACTATGATTTCATTTTAGCAA 59.030 33.333 15.18 4.54 37.83 3.91
3135 4062 5.771469 TGTTGTGTGGAGCTGAAATATTTG 58.229 37.500 5.17 0.00 0.00 2.32
3143 4070 7.119699 TGTGGAGCTGAAATATTTGTGTAGAAG 59.880 37.037 5.17 0.00 0.00 2.85
3146 4073 8.730680 GGAGCTGAAATATTTGTGTAGAAGAAA 58.269 33.333 5.17 0.00 0.00 2.52
3182 4109 5.847111 TGCGTGTAATCTGGAATAGTAGT 57.153 39.130 0.00 0.00 0.00 2.73
3183 4110 5.828747 TGCGTGTAATCTGGAATAGTAGTC 58.171 41.667 0.00 0.00 0.00 2.59
3209 4148 9.932207 CGGGTTTATATATGTATAAGTTCACCA 57.068 33.333 16.46 0.00 34.49 4.17
3220 4159 8.574251 TGTATAAGTTCACCACAAATAGCAAT 57.426 30.769 0.00 0.00 0.00 3.56
3242 4181 6.816134 ATTTGTTTCTTGGTTGCAAAAACT 57.184 29.167 19.19 2.94 33.60 2.66
3243 4182 7.913674 ATTTGTTTCTTGGTTGCAAAAACTA 57.086 28.000 19.19 12.21 33.60 2.24
3244 4183 7.913674 TTTGTTTCTTGGTTGCAAAAACTAT 57.086 28.000 19.19 0.00 32.44 2.12
3245 4184 9.606631 ATTTGTTTCTTGGTTGCAAAAACTATA 57.393 25.926 19.19 9.04 33.60 1.31
3416 4470 0.915364 AGGACAAGCCCCAAGATCTC 59.085 55.000 0.00 0.00 37.37 2.75
3422 4476 2.107141 CCCCAAGATCTCGCCGAC 59.893 66.667 0.00 0.00 0.00 4.79
3560 4614 4.988598 ACCGCGCACCTGGTGAAG 62.989 66.667 30.23 21.93 37.02 3.02
3593 4647 0.899717 TGGCCATGGACAAGAAAGCC 60.900 55.000 21.08 7.41 39.41 4.35
3740 4794 1.153208 GCAGACCATCCTGGAGCTG 60.153 63.158 1.52 8.20 40.96 4.24
4094 5148 0.332972 GCAAGGACCTGGGGAAGATT 59.667 55.000 0.00 0.00 0.00 2.40
4160 5214 3.494626 TGTTTGATCTCAAGAACGTGCTC 59.505 43.478 0.00 0.00 37.15 4.26
4174 5228 0.109039 GTGCTCGAGGACTGGAAGAC 60.109 60.000 27.63 0.30 37.43 3.01
4187 5241 3.181474 ACTGGAAGACCTATAAGAAGCGC 60.181 47.826 0.00 0.00 37.43 5.92
4256 5313 4.067896 GGTGCATACACTGATGGATTAGG 58.932 47.826 0.00 0.00 46.57 2.69
4257 5314 4.067896 GTGCATACACTGATGGATTAGGG 58.932 47.826 0.00 0.00 43.85 3.53
4259 5316 3.073062 GCATACACTGATGGATTAGGGGT 59.927 47.826 0.00 0.00 0.00 4.95
4260 5317 4.446311 GCATACACTGATGGATTAGGGGTT 60.446 45.833 0.00 0.00 0.00 4.11
4261 5318 3.652057 ACACTGATGGATTAGGGGTTG 57.348 47.619 0.00 0.00 0.00 3.77
4262 5319 2.301346 CACTGATGGATTAGGGGTTGC 58.699 52.381 0.00 0.00 0.00 4.17
4263 5320 1.922447 ACTGATGGATTAGGGGTTGCA 59.078 47.619 0.00 0.00 0.00 4.08
4377 5440 1.136110 CGTGTCAAGGCTTTGGGTTTT 59.864 47.619 8.88 0.00 34.97 2.43
4378 5441 2.798145 CGTGTCAAGGCTTTGGGTTTTC 60.798 50.000 8.88 0.00 34.97 2.29
4380 5443 2.430332 TGTCAAGGCTTTGGGTTTTCTG 59.570 45.455 8.88 0.00 34.97 3.02
4382 5445 2.430332 TCAAGGCTTTGGGTTTTCTGTG 59.570 45.455 8.88 0.00 34.97 3.66
4412 5480 1.937359 CGCGTGATTGTTCAAGTGTC 58.063 50.000 0.00 0.00 37.17 3.67
4421 5489 2.209273 TGTTCAAGTGTCACGTGATGG 58.791 47.619 23.12 3.30 36.55 3.51
4422 5490 1.531149 GTTCAAGTGTCACGTGATGGG 59.469 52.381 23.12 10.09 36.55 4.00
4425 5493 1.768684 AAGTGTCACGTGATGGGCCT 61.769 55.000 23.12 10.17 0.00 5.19
4426 5494 0.902984 AGTGTCACGTGATGGGCCTA 60.903 55.000 23.12 0.00 0.00 3.93
4427 5495 0.178068 GTGTCACGTGATGGGCCTAT 59.822 55.000 23.12 0.00 0.00 2.57
4428 5496 0.908910 TGTCACGTGATGGGCCTATT 59.091 50.000 23.12 0.00 0.00 1.73
4429 5497 1.280710 TGTCACGTGATGGGCCTATTT 59.719 47.619 23.12 0.00 0.00 1.40
4430 5498 2.502130 TGTCACGTGATGGGCCTATTTA 59.498 45.455 23.12 0.00 0.00 1.40
4434 5502 5.761234 GTCACGTGATGGGCCTATTTATTTA 59.239 40.000 23.12 0.00 0.00 1.40
4466 5535 1.066358 AGTGACGGGCCTTAAGTAAGC 60.066 52.381 0.84 0.00 32.02 3.09
4493 5582 3.077359 CTCAAAATCAGGTCACTCCCAC 58.923 50.000 0.00 0.00 36.75 4.61
4502 5591 1.149148 GTCACTCCCACTTTTCTCGC 58.851 55.000 0.00 0.00 0.00 5.03
4519 5608 2.633657 CGTGCTGACAAGTGGTGC 59.366 61.111 0.00 0.00 0.00 5.01
4523 5612 0.467804 TGCTGACAAGTGGTGCACTA 59.532 50.000 17.98 8.10 44.62 2.74
4526 5615 2.771089 CTGACAAGTGGTGCACTACAT 58.229 47.619 31.51 19.93 44.62 2.29
4530 5619 2.221169 CAAGTGGTGCACTACATGTGT 58.779 47.619 31.51 10.90 44.62 3.72
4532 5621 2.421388 AAGTGGTGCACTACATGTGTGT 60.421 45.455 31.51 9.46 44.62 3.72
4535 5624 7.945416 AAGTGGTGCACTACATGTGTGTCAT 62.945 44.000 31.51 7.30 44.62 3.06
4545 5634 9.920826 CACTACATGTGTGTCATTTATACATTC 57.079 33.333 9.11 0.00 41.53 2.67
4602 5691 4.817517 ACGTTTGATCTCTTGAACCGTAT 58.182 39.130 0.00 0.00 0.00 3.06
4825 5917 2.306847 ACGAAGAACCCAAAAGCACAT 58.693 42.857 0.00 0.00 0.00 3.21
4826 5918 2.293399 ACGAAGAACCCAAAAGCACATC 59.707 45.455 0.00 0.00 0.00 3.06
4830 5922 3.299503 AGAACCCAAAAGCACATCTGTT 58.700 40.909 0.00 0.00 0.00 3.16
4834 5926 3.706086 ACCCAAAAGCACATCTGTTCTTT 59.294 39.130 2.70 2.70 41.84 2.52
4835 5927 4.892934 ACCCAAAAGCACATCTGTTCTTTA 59.107 37.500 8.10 0.00 39.81 1.85
4874 5968 5.698545 CACAACTGTGTTTTTCCCTTTTTGA 59.301 36.000 1.51 0.00 40.96 2.69
4876 5970 5.993748 ACTGTGTTTTTCCCTTTTTGAGA 57.006 34.783 0.00 0.00 0.00 3.27
4879 5973 5.175127 TGTGTTTTTCCCTTTTTGAGAAGC 58.825 37.500 0.00 0.00 0.00 3.86
4882 5976 3.708563 TTTCCCTTTTTGAGAAGCACG 57.291 42.857 0.00 0.00 0.00 5.34
4885 5979 1.600413 CCCTTTTTGAGAAGCACGTGC 60.600 52.381 32.79 32.79 42.49 5.34
4897 5991 2.928801 CACGTGCTGTGTTGTTGTG 58.071 52.632 0.82 0.00 43.88 3.33
4898 5992 0.167908 CACGTGCTGTGTTGTTGTGT 59.832 50.000 0.82 0.00 43.88 3.72
4899 5993 0.878416 ACGTGCTGTGTTGTTGTGTT 59.122 45.000 0.00 0.00 0.00 3.32
4900 5994 1.258427 CGTGCTGTGTTGTTGTGTTG 58.742 50.000 0.00 0.00 0.00 3.33
4907 6001 4.380023 GCTGTGTTGTTGTGTTGTTCCTTA 60.380 41.667 0.00 0.00 0.00 2.69
4909 6003 5.885881 TGTGTTGTTGTGTTGTTCCTTATC 58.114 37.500 0.00 0.00 0.00 1.75
4936 6030 6.092533 GGAACCATGGAAGCACATTATTTTTG 59.907 38.462 21.47 0.00 0.00 2.44
4937 6031 6.112927 ACCATGGAAGCACATTATTTTTGT 57.887 33.333 21.47 0.00 0.00 2.83
4938 6032 6.532826 ACCATGGAAGCACATTATTTTTGTT 58.467 32.000 21.47 0.00 0.00 2.83
4947 6041 6.486320 AGCACATTATTTTTGTTTTGGAAGGG 59.514 34.615 0.00 0.00 0.00 3.95
4956 6050 1.480545 GTTTTGGAAGGGCAACTGTGT 59.519 47.619 0.00 0.00 0.00 3.72
4958 6052 1.110442 TTGGAAGGGCAACTGTGTTG 58.890 50.000 6.12 6.12 0.00 3.33
4966 6060 1.067516 GGCAACTGTGTTGTTCAGCAT 59.932 47.619 11.35 0.00 36.50 3.79
4969 6063 4.549458 GCAACTGTGTTGTTCAGCATAAT 58.451 39.130 11.35 0.00 36.50 1.28
4970 6064 4.984161 GCAACTGTGTTGTTCAGCATAATT 59.016 37.500 11.35 0.00 36.50 1.40
4975 6069 7.885297 ACTGTGTTGTTCAGCATAATTTATGT 58.115 30.769 15.88 2.95 38.43 2.29
4976 6070 8.359642 ACTGTGTTGTTCAGCATAATTTATGTT 58.640 29.630 15.88 8.75 38.43 2.71
4977 6071 9.195411 CTGTGTTGTTCAGCATAATTTATGTTT 57.805 29.630 15.88 4.56 38.43 2.83
4978 6072 9.539825 TGTGTTGTTCAGCATAATTTATGTTTT 57.460 25.926 15.88 2.48 38.43 2.43
5053 6147 0.735978 TGCTTATCACACCACTCGCG 60.736 55.000 0.00 0.00 0.00 5.87
5061 6155 0.814010 ACACCACTCGCGAAAAAGCT 60.814 50.000 11.33 0.00 34.40 3.74
5067 6161 1.321940 CTCGCGAAAAAGCTTTGCTC 58.678 50.000 13.54 11.53 38.25 4.26
5068 6162 0.040425 TCGCGAAAAAGCTTTGCTCC 60.040 50.000 13.54 6.29 38.25 4.70
5123 6217 3.742983 AAAAACCGCAAAGCCGAAA 57.257 42.105 0.00 0.00 0.00 3.46
5124 6218 2.011540 AAAAACCGCAAAGCCGAAAA 57.988 40.000 0.00 0.00 0.00 2.29
5125 6219 2.011540 AAAACCGCAAAGCCGAAAAA 57.988 40.000 0.00 0.00 0.00 1.94
5147 6241 8.642935 AAAAACAAAAAGGAAGATCCCAAAAA 57.357 26.923 0.00 0.00 37.19 1.94
5148 6242 8.821686 AAAACAAAAAGGAAGATCCCAAAAAT 57.178 26.923 0.00 0.00 37.19 1.82
5184 6278 0.813610 TAAATCTGTGGATGCGCCCG 60.814 55.000 4.18 0.00 34.97 6.13
5185 6279 4.552365 ATCTGTGGATGCGCCCGG 62.552 66.667 4.18 0.00 34.97 5.73
5205 6299 2.401766 GCTTGACATGTGGCGGAGG 61.402 63.158 1.15 0.00 0.00 4.30
5222 6316 4.373116 GCTGGACGGGCGACTTGA 62.373 66.667 0.00 0.00 0.00 3.02
5224 6318 4.351938 TGGACGGGCGACTTGACG 62.352 66.667 0.00 0.00 0.00 4.35
5235 6329 2.811317 CTTGACGCACTCTCGGGC 60.811 66.667 0.00 0.00 0.00 6.13
5243 6337 1.866853 GCACTCTCGGGCCCAAAAAG 61.867 60.000 24.92 15.39 0.00 2.27
5244 6338 0.537371 CACTCTCGGGCCCAAAAAGT 60.537 55.000 24.92 16.08 0.00 2.66
5245 6339 0.537371 ACTCTCGGGCCCAAAAAGTG 60.537 55.000 24.92 15.49 0.00 3.16
5246 6340 0.250727 CTCTCGGGCCCAAAAAGTGA 60.251 55.000 24.92 10.30 0.00 3.41
5247 6341 0.536460 TCTCGGGCCCAAAAAGTGAC 60.536 55.000 24.92 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.629878 TGGAGTAGTTAGGTGTTTTCATAAAAA 57.370 29.630 0.00 0.00 31.13 1.94
10 11 9.802039 ATGGAGTAGTTAGGTGTTTTCATAAAA 57.198 29.630 0.00 0.00 0.00 1.52
14 15 6.415573 GGATGGAGTAGTTAGGTGTTTTCAT 58.584 40.000 0.00 0.00 0.00 2.57
15 16 5.568023 CGGATGGAGTAGTTAGGTGTTTTCA 60.568 44.000 0.00 0.00 0.00 2.69
16 17 4.868734 CGGATGGAGTAGTTAGGTGTTTTC 59.131 45.833 0.00 0.00 0.00 2.29
17 18 4.285260 ACGGATGGAGTAGTTAGGTGTTTT 59.715 41.667 0.00 0.00 0.00 2.43
33 873 4.040461 ACTCTTATATTGTGGGACGGATGG 59.960 45.833 0.00 0.00 0.00 3.51
67 907 9.758021 TCGTCCCATAATATAACACCTCTTATA 57.242 33.333 0.00 0.00 0.00 0.98
69 909 8.481492 TTCGTCCCATAATATAACACCTCTTA 57.519 34.615 0.00 0.00 0.00 2.10
70 910 6.989155 TCGTCCCATAATATAACACCTCTT 57.011 37.500 0.00 0.00 0.00 2.85
71 911 6.014499 CCTTCGTCCCATAATATAACACCTCT 60.014 42.308 0.00 0.00 0.00 3.69
72 912 6.164176 CCTTCGTCCCATAATATAACACCTC 58.836 44.000 0.00 0.00 0.00 3.85
73 913 5.012768 CCCTTCGTCCCATAATATAACACCT 59.987 44.000 0.00 0.00 0.00 4.00
74 914 5.012354 TCCCTTCGTCCCATAATATAACACC 59.988 44.000 0.00 0.00 0.00 4.16
75 915 6.105397 TCCCTTCGTCCCATAATATAACAC 57.895 41.667 0.00 0.00 0.00 3.32
76 916 5.842328 ACTCCCTTCGTCCCATAATATAACA 59.158 40.000 0.00 0.00 0.00 2.41
77 917 6.356186 ACTCCCTTCGTCCCATAATATAAC 57.644 41.667 0.00 0.00 0.00 1.89
85 925 4.232091 ACATTATACTCCCTTCGTCCCAT 58.768 43.478 0.00 0.00 0.00 4.00
91 931 5.749109 GTCTCACAACATTATACTCCCTTCG 59.251 44.000 0.00 0.00 0.00 3.79
93 933 6.875972 AGTCTCACAACATTATACTCCCTT 57.124 37.500 0.00 0.00 0.00 3.95
106 946 5.500645 AAAAAGTAGGCAAGTCTCACAAC 57.499 39.130 0.00 0.00 0.00 3.32
129 969 4.646945 TGCACTTTGGGTGTCTTCATTAAA 59.353 37.500 0.00 0.00 46.86 1.52
163 1003 7.882271 TGGCCTTTGTTTTGCTCAATATTAATT 59.118 29.630 3.32 0.00 0.00 1.40
164 1004 7.393216 TGGCCTTTGTTTTGCTCAATATTAAT 58.607 30.769 3.32 0.00 0.00 1.40
172 1012 1.484038 ACTGGCCTTTGTTTTGCTCA 58.516 45.000 3.32 0.00 0.00 4.26
186 1026 4.770795 AGTTGTCTATCCATTGTACTGGC 58.229 43.478 0.00 0.00 36.16 4.85
191 1031 4.397103 ACGTCGAGTTGTCTATCCATTGTA 59.603 41.667 0.00 0.00 0.00 2.41
197 1037 1.741706 TCCACGTCGAGTTGTCTATCC 59.258 52.381 0.00 0.00 0.00 2.59
207 1047 0.249322 ACTGGTTGTTCCACGTCGAG 60.249 55.000 0.00 0.00 41.93 4.04
209 1049 1.855513 TTACTGGTTGTTCCACGTCG 58.144 50.000 0.00 0.00 41.93 5.12
248 1088 6.546034 AGAAGAGGAAGAAGACTAGTATGCTC 59.454 42.308 0.00 2.57 0.00 4.26
250 1090 6.320164 TCAGAAGAGGAAGAAGACTAGTATGC 59.680 42.308 0.00 0.00 0.00 3.14
278 1118 1.091771 ATCTTCGGCAGGCGACATTG 61.092 55.000 20.28 9.76 0.00 2.82
281 1121 1.741401 CAATCTTCGGCAGGCGACA 60.741 57.895 20.28 9.22 0.00 4.35
288 1128 7.722795 TCGATATATTTTTCAATCTTCGGCA 57.277 32.000 0.00 0.00 0.00 5.69
328 1168 2.758423 GTGTTCTTGGGTGTCACCTTTT 59.242 45.455 21.40 0.00 38.64 2.27
332 1172 0.822121 GGGTGTTCTTGGGTGTCACC 60.822 60.000 14.13 14.13 45.17 4.02
340 1180 3.583882 ATGCCGGGGGTGTTCTTGG 62.584 63.158 2.18 0.00 0.00 3.61
343 1183 4.740822 GCATGCCGGGGGTGTTCT 62.741 66.667 6.36 0.00 0.00 3.01
352 1192 1.603236 TTTAAAGCCTGGCATGCCGG 61.603 55.000 34.88 34.88 42.03 6.13
354 1194 1.134995 GTCTTTAAAGCCTGGCATGCC 60.135 52.381 30.54 30.54 0.00 4.40
355 1195 1.134995 GGTCTTTAAAGCCTGGCATGC 60.135 52.381 22.65 9.90 0.00 4.06
357 1197 1.463674 CGGTCTTTAAAGCCTGGCAT 58.536 50.000 22.65 5.87 0.00 4.40
359 1199 1.506718 GCGGTCTTTAAAGCCTGGC 59.493 57.895 11.65 11.65 0.00 4.85
365 1205 2.284417 GTGGCTATCGCGGTCTTTAAAG 59.716 50.000 6.13 9.04 36.88 1.85
369 1209 0.179108 GAGTGGCTATCGCGGTCTTT 60.179 55.000 6.13 0.00 36.88 2.52
378 1221 0.685097 TTATGGGGCGAGTGGCTATC 59.315 55.000 0.00 0.00 42.94 2.08
393 1236 8.752254 TCAACGATTTTTATAGCTCGTCTTATG 58.248 33.333 0.00 0.00 42.97 1.90
394 1237 8.867112 TCAACGATTTTTATAGCTCGTCTTAT 57.133 30.769 0.00 0.00 42.97 1.73
404 1247 7.164171 CCGATGCTGTTTCAACGATTTTTATAG 59.836 37.037 0.00 0.00 34.76 1.31
406 1249 5.799936 CCGATGCTGTTTCAACGATTTTTAT 59.200 36.000 0.00 0.00 34.76 1.40
412 1255 0.447801 GCCGATGCTGTTTCAACGAT 59.552 50.000 0.00 0.00 34.76 3.73
418 1261 0.099436 GGTGATGCCGATGCTGTTTC 59.901 55.000 0.00 0.00 38.71 2.78
421 1264 2.124570 GGGTGATGCCGATGCTGT 60.125 61.111 0.00 0.00 38.71 4.40
424 1267 3.589881 GCTGGGTGATGCCGATGC 61.590 66.667 0.00 0.00 38.44 3.91
444 1288 0.831307 GCCGGTATCTCCAAACCTCT 59.169 55.000 1.90 0.00 35.57 3.69
445 1289 0.179054 GGCCGGTATCTCCAAACCTC 60.179 60.000 1.90 0.00 35.57 3.85
451 1295 2.792947 GCTTCGGCCGGTATCTCCA 61.793 63.158 27.83 0.00 35.57 3.86
471 1315 0.240945 CCTTTGTGTTGATCCGTGGC 59.759 55.000 0.00 0.00 0.00 5.01
472 1316 1.890876 TCCTTTGTGTTGATCCGTGG 58.109 50.000 0.00 0.00 0.00 4.94
473 1317 2.226437 CCTTCCTTTGTGTTGATCCGTG 59.774 50.000 0.00 0.00 0.00 4.94
489 1333 0.179156 TGACGATTACGACGCCTTCC 60.179 55.000 0.00 0.00 42.66 3.46
494 1338 0.730155 TGGTGTGACGATTACGACGC 60.730 55.000 0.00 0.00 42.61 5.19
495 1339 1.688793 TTGGTGTGACGATTACGACG 58.311 50.000 0.00 0.00 42.66 5.12
506 1350 0.685785 TTGGCTGGCTTTTGGTGTGA 60.686 50.000 2.00 0.00 0.00 3.58
521 1365 2.514803 TGGTAAAGGAAGAGCTTTGGC 58.485 47.619 0.00 0.00 39.06 4.52
522 1366 5.728637 ATTTGGTAAAGGAAGAGCTTTGG 57.271 39.130 0.00 0.00 0.00 3.28
523 1367 7.970614 GTGATATTTGGTAAAGGAAGAGCTTTG 59.029 37.037 0.00 0.00 0.00 2.77
532 1376 4.791334 TGGAGGGTGATATTTGGTAAAGGA 59.209 41.667 0.00 0.00 0.00 3.36
534 1378 7.660030 AAATGGAGGGTGATATTTGGTAAAG 57.340 36.000 0.00 0.00 0.00 1.85
578 1422 2.086251 AACCGGCCGAGACGTTTGTA 62.086 55.000 30.73 0.00 28.54 2.41
603 1447 3.191162 GCACTGCATCAGGTTATTGTTGA 59.809 43.478 0.00 0.00 35.51 3.18
604 1448 3.192001 AGCACTGCATCAGGTTATTGTTG 59.808 43.478 3.30 0.00 35.51 3.33
774 1624 2.044352 GGGTTGTTGGGATCGGGG 60.044 66.667 0.00 0.00 0.00 5.73
827 1681 3.537297 GCGAGCGAGCGAGTTGTC 61.537 66.667 1.41 0.00 0.00 3.18
891 1747 2.902343 GGCCGTGCATAAGGAGCC 60.902 66.667 9.60 3.42 0.00 4.70
894 1750 1.440060 CTACGGCCGTGCATAAGGA 59.560 57.895 40.02 17.17 0.00 3.36
937 1797 2.045536 GCTGCCAGACCAGGAAGG 60.046 66.667 0.00 0.00 45.67 3.46
1140 2002 1.078214 CTCTTGCTTGGGCCGATCA 60.078 57.895 0.00 0.00 37.74 2.92
1178 2043 0.323087 AACCACGCCCTTAATCACCC 60.323 55.000 0.00 0.00 0.00 4.61
1215 2080 4.899239 GGACCATCTCTGCCGCCG 62.899 72.222 0.00 0.00 0.00 6.46
1280 2154 0.100503 AACCTGTTGCTTGTTCGCAC 59.899 50.000 0.00 0.00 40.09 5.34
1407 2285 7.715265 TCAGTCAAAGTTCACTCTTATCAAC 57.285 36.000 0.00 0.00 0.00 3.18
1423 2301 4.326826 GGGATGACAAGTGATCAGTCAAA 58.673 43.478 17.25 0.00 44.47 2.69
1430 2308 2.672961 TCACGGGATGACAAGTGATC 57.327 50.000 0.00 0.00 38.52 2.92
1440 2318 3.270027 TCTTAGCACAAATCACGGGATG 58.730 45.455 0.00 0.00 32.92 3.51
1461 2339 7.281999 CCAAATGGGTGTGTTAATCAAGTTTTT 59.718 33.333 0.00 0.00 0.00 1.94
1462 2340 6.765512 CCAAATGGGTGTGTTAATCAAGTTTT 59.234 34.615 0.00 0.00 0.00 2.43
1469 2347 2.564947 TGGCCAAATGGGTGTGTTAATC 59.435 45.455 0.61 0.00 39.65 1.75
1491 2369 5.187967 AGGTGTGGGTCATCTAACTAAGAAG 59.812 44.000 0.00 0.00 37.89 2.85
1502 2380 2.717639 AATGCTAGGTGTGGGTCATC 57.282 50.000 0.00 0.00 0.00 2.92
1523 2401 4.350368 TGTGTTTGGTAAGATGCTCTCA 57.650 40.909 0.00 0.00 0.00 3.27
1571 2449 6.833342 AATTCATCTGTCAAAAAGTTGCAC 57.167 33.333 0.00 0.00 34.50 4.57
1624 2510 3.317711 TCAACATCGTCAAGTGGCATTTT 59.682 39.130 0.00 0.00 0.00 1.82
1714 2605 4.828829 ACTTACATTTAGGAACGGAGGTG 58.171 43.478 0.00 0.00 0.00 4.00
1750 2641 8.981724 ATACATACGTATATAGTTTGCAGTGG 57.018 34.615 7.96 0.00 36.53 4.00
1801 2692 9.478768 TGAACTACATACGAAACAAAATGAGTA 57.521 29.630 0.00 0.00 0.00 2.59
1896 2788 5.623596 CGGTATGTTCTACATCCACAAGTGA 60.624 44.000 0.94 0.00 39.88 3.41
1915 2807 1.692173 ATAAGGGTGCGGTGCGGTAT 61.692 55.000 0.00 0.00 0.00 2.73
1916 2808 1.901654 AATAAGGGTGCGGTGCGGTA 61.902 55.000 0.00 0.00 0.00 4.02
1918 2810 1.988834 GAAATAAGGGTGCGGTGCGG 61.989 60.000 0.00 0.00 0.00 5.69
1919 2811 1.024579 AGAAATAAGGGTGCGGTGCG 61.025 55.000 0.00 0.00 0.00 5.34
1920 2812 1.173913 AAGAAATAAGGGTGCGGTGC 58.826 50.000 0.00 0.00 0.00 5.01
1921 2813 3.934457 AAAAGAAATAAGGGTGCGGTG 57.066 42.857 0.00 0.00 0.00 4.94
2383 3305 3.975670 CGATGAAGTCTTCTATGTACCGC 59.024 47.826 13.67 0.00 0.00 5.68
2385 3307 5.189659 AGCGATGAAGTCTTCTATGTACC 57.810 43.478 13.67 0.00 0.00 3.34
2495 3418 3.770933 ACACCTACCATTACTTCGGCTAA 59.229 43.478 0.00 0.00 0.00 3.09
2507 3430 3.926058 GGATACAACCACACCTACCAT 57.074 47.619 0.00 0.00 0.00 3.55
2529 3452 2.610976 CGAGGACATTACAACCGTGGAA 60.611 50.000 0.00 0.00 30.03 3.53
2530 3453 1.067425 CGAGGACATTACAACCGTGGA 60.067 52.381 0.00 0.00 0.00 4.02
2531 3454 1.337447 ACGAGGACATTACAACCGTGG 60.337 52.381 0.00 0.00 0.00 4.94
2534 3457 4.100707 TCTTACGAGGACATTACAACCG 57.899 45.455 0.00 0.00 0.00 4.44
2535 3458 5.069501 ACTCTTACGAGGACATTACAACC 57.930 43.478 0.86 0.00 41.71 3.77
2536 3459 8.592998 CAAATACTCTTACGAGGACATTACAAC 58.407 37.037 0.86 0.00 41.71 3.32
2537 3460 8.308931 ACAAATACTCTTACGAGGACATTACAA 58.691 33.333 0.86 0.00 41.71 2.41
2538 3461 7.833786 ACAAATACTCTTACGAGGACATTACA 58.166 34.615 0.86 0.00 41.71 2.41
2599 3522 9.921637 TGCTAACTCCTTTTGTATTAAAAATGG 57.078 29.630 5.32 5.32 34.64 3.16
2617 3540 1.623811 TGGTGAAGGAGGTGCTAACTC 59.376 52.381 0.00 0.00 0.00 3.01
2629 3552 7.094762 GGAGTAACTCTTAAACAATGGTGAAGG 60.095 40.741 0.00 0.00 0.00 3.46
2651 3574 3.916989 ACTTATTTTGGGACAGAGGGAGT 59.083 43.478 0.00 0.00 42.39 3.85
2652 3575 4.019321 TCACTTATTTTGGGACAGAGGGAG 60.019 45.833 0.00 0.00 42.39 4.30
2653 3576 3.913799 TCACTTATTTTGGGACAGAGGGA 59.086 43.478 0.00 0.00 42.39 4.20
2654 3577 4.010349 GTCACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
2655 3578 4.911390 AGTCACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
2656 3579 5.551233 TGAGTCACTTATTTTGGGACAGAG 58.449 41.667 0.00 0.00 42.39 3.35
2657 3580 5.560722 TGAGTCACTTATTTTGGGACAGA 57.439 39.130 0.00 0.00 42.39 3.41
2658 3581 5.765182 AGTTGAGTCACTTATTTTGGGACAG 59.235 40.000 0.00 0.00 42.39 3.51
2659 3582 5.690865 AGTTGAGTCACTTATTTTGGGACA 58.309 37.500 0.00 0.00 0.00 4.02
2660 3583 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2661 3584 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
2662 3585 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
2663 3586 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
2664 3587 9.438291 CAGTACAAAGTTGAGTCACTTATTTTG 57.562 33.333 8.80 8.80 35.87 2.44
2665 3588 8.621286 CCAGTACAAAGTTGAGTCACTTATTTT 58.379 33.333 0.00 0.00 35.87 1.82
2666 3589 7.990886 TCCAGTACAAAGTTGAGTCACTTATTT 59.009 33.333 0.00 0.00 35.87 1.40
2667 3590 7.441458 GTCCAGTACAAAGTTGAGTCACTTATT 59.559 37.037 0.00 0.00 35.87 1.40
2668 3591 6.929606 GTCCAGTACAAAGTTGAGTCACTTAT 59.070 38.462 0.00 0.00 35.87 1.73
2669 3592 6.278363 GTCCAGTACAAAGTTGAGTCACTTA 58.722 40.000 0.00 0.00 35.87 2.24
2670 3593 5.116882 GTCCAGTACAAAGTTGAGTCACTT 58.883 41.667 0.00 0.00 38.74 3.16
2671 3594 4.694339 GTCCAGTACAAAGTTGAGTCACT 58.306 43.478 0.00 0.00 0.00 3.41
2672 3595 3.489785 CGTCCAGTACAAAGTTGAGTCAC 59.510 47.826 0.00 0.00 0.00 3.67
2673 3596 3.491964 CCGTCCAGTACAAAGTTGAGTCA 60.492 47.826 0.00 0.00 0.00 3.41
2674 3597 3.057734 CCGTCCAGTACAAAGTTGAGTC 58.942 50.000 0.00 0.00 0.00 3.36
2675 3598 2.696707 TCCGTCCAGTACAAAGTTGAGT 59.303 45.455 0.00 0.00 0.00 3.41
2676 3599 3.005472 TCTCCGTCCAGTACAAAGTTGAG 59.995 47.826 0.00 0.00 0.00 3.02
2677 3600 2.960384 TCTCCGTCCAGTACAAAGTTGA 59.040 45.455 0.00 0.00 0.00 3.18
2678 3601 3.005472 TCTCTCCGTCCAGTACAAAGTTG 59.995 47.826 0.00 0.00 0.00 3.16
2679 3602 3.228453 TCTCTCCGTCCAGTACAAAGTT 58.772 45.455 0.00 0.00 0.00 2.66
2680 3603 2.820787 CTCTCTCCGTCCAGTACAAAGT 59.179 50.000 0.00 0.00 0.00 2.66
2681 3604 2.164624 CCTCTCTCCGTCCAGTACAAAG 59.835 54.545 0.00 0.00 0.00 2.77
2682 3605 2.168496 CCTCTCTCCGTCCAGTACAAA 58.832 52.381 0.00 0.00 0.00 2.83
2683 3606 1.353358 TCCTCTCTCCGTCCAGTACAA 59.647 52.381 0.00 0.00 0.00 2.41
2684 3607 0.989602 TCCTCTCTCCGTCCAGTACA 59.010 55.000 0.00 0.00 0.00 2.90
2685 3608 2.351706 ATCCTCTCTCCGTCCAGTAC 57.648 55.000 0.00 0.00 0.00 2.73
2686 3609 4.726035 ATAATCCTCTCTCCGTCCAGTA 57.274 45.455 0.00 0.00 0.00 2.74
2687 3610 3.603965 ATAATCCTCTCTCCGTCCAGT 57.396 47.619 0.00 0.00 0.00 4.00
2688 3611 3.639094 ACAATAATCCTCTCTCCGTCCAG 59.361 47.826 0.00 0.00 0.00 3.86
2689 3612 3.643237 ACAATAATCCTCTCTCCGTCCA 58.357 45.455 0.00 0.00 0.00 4.02
2690 3613 4.342665 AGAACAATAATCCTCTCTCCGTCC 59.657 45.833 0.00 0.00 0.00 4.79
2691 3614 5.523438 AGAACAATAATCCTCTCTCCGTC 57.477 43.478 0.00 0.00 0.00 4.79
2692 3615 5.302313 GGTAGAACAATAATCCTCTCTCCGT 59.698 44.000 0.00 0.00 0.00 4.69
2693 3616 5.302059 TGGTAGAACAATAATCCTCTCTCCG 59.698 44.000 0.00 0.00 0.00 4.63
2694 3617 6.325286 ACTGGTAGAACAATAATCCTCTCTCC 59.675 42.308 0.00 0.00 0.00 3.71
2695 3618 7.068839 TCACTGGTAGAACAATAATCCTCTCTC 59.931 40.741 0.00 0.00 0.00 3.20
2696 3619 6.897966 TCACTGGTAGAACAATAATCCTCTCT 59.102 38.462 0.00 0.00 0.00 3.10
2697 3620 6.981559 GTCACTGGTAGAACAATAATCCTCTC 59.018 42.308 0.00 0.00 0.00 3.20
2698 3621 6.440647 TGTCACTGGTAGAACAATAATCCTCT 59.559 38.462 0.00 0.00 0.00 3.69
2699 3622 6.640518 TGTCACTGGTAGAACAATAATCCTC 58.359 40.000 0.00 0.00 0.00 3.71
2700 3623 6.620877 TGTCACTGGTAGAACAATAATCCT 57.379 37.500 0.00 0.00 0.00 3.24
2701 3624 7.681939 TTTGTCACTGGTAGAACAATAATCC 57.318 36.000 0.00 0.00 0.00 3.01
2717 3640 4.402155 TGTCAAAGCCAGAATTTTGTCACT 59.598 37.500 0.00 0.00 36.09 3.41
2893 3820 6.180472 CAACACACAAGGGGATTATCTAGTT 58.820 40.000 0.00 0.00 0.00 2.24
2895 3822 5.745227 ACAACACACAAGGGGATTATCTAG 58.255 41.667 0.00 0.00 0.00 2.43
2921 3848 8.017373 AGCATCGACATTATTCATTTATTTCCG 58.983 33.333 0.00 0.00 0.00 4.30
2931 3858 5.768317 TCGATGTAGCATCGACATTATTCA 58.232 37.500 24.44 5.24 44.42 2.57
2941 3868 2.159747 CCATGCATTCGATGTAGCATCG 60.160 50.000 21.17 21.17 45.14 3.84
2987 3914 3.262420 GTTCACCTGTATTCGATGCTGT 58.738 45.455 0.00 0.00 0.00 4.40
2988 3915 3.062639 GTGTTCACCTGTATTCGATGCTG 59.937 47.826 0.00 0.00 0.00 4.41
2992 3919 5.305585 AGTTTGTGTTCACCTGTATTCGAT 58.694 37.500 0.37 0.00 0.00 3.59
2993 3920 4.699637 AGTTTGTGTTCACCTGTATTCGA 58.300 39.130 0.37 0.00 0.00 3.71
2994 3921 4.509970 TGAGTTTGTGTTCACCTGTATTCG 59.490 41.667 0.37 0.00 0.00 3.34
2995 3922 6.560253 ATGAGTTTGTGTTCACCTGTATTC 57.440 37.500 0.37 0.00 0.00 1.75
2996 3923 5.179368 CGATGAGTTTGTGTTCACCTGTATT 59.821 40.000 0.37 0.00 0.00 1.89
2997 3924 4.690748 CGATGAGTTTGTGTTCACCTGTAT 59.309 41.667 0.37 0.00 0.00 2.29
3000 3927 3.059597 GTCGATGAGTTTGTGTTCACCTG 60.060 47.826 0.00 0.00 0.00 4.00
3003 3930 2.538449 ACGTCGATGAGTTTGTGTTCAC 59.462 45.455 12.58 0.00 0.00 3.18
3014 3941 2.353807 GTGAGCACACGTCGATGAG 58.646 57.895 12.58 6.01 37.28 2.90
3015 3942 4.552278 GTGAGCACACGTCGATGA 57.448 55.556 12.58 0.00 37.28 2.92
3102 4029 5.877012 CAGCTCCACACAACAAAGATACTAT 59.123 40.000 0.00 0.00 0.00 2.12
3119 4046 7.394016 TCTTCTACACAAATATTTCAGCTCCA 58.606 34.615 0.00 0.00 0.00 3.86
3135 4062 6.044512 ACGTGAACACAATTTCTTCTACAC 57.955 37.500 5.80 0.00 0.00 2.90
3183 4110 9.932207 TGGTGAACTTATACATATATAAACCCG 57.068 33.333 1.63 0.00 33.28 5.28
3220 4159 7.913674 ATAGTTTTTGCAACCAAGAAACAAA 57.086 28.000 20.19 11.51 36.07 2.83
3365 4419 7.909267 TCAGTGAAATCATTTAGCGTTGATAG 58.091 34.615 0.00 0.00 32.40 2.08
3373 4427 6.151691 TGCTGTTTCAGTGAAATCATTTAGC 58.848 36.000 20.72 19.92 33.97 3.09
3560 4614 1.147153 GGCCACTATGAGGAGGTGC 59.853 63.158 0.00 0.00 0.00 5.01
3566 4620 0.839277 TGTCCATGGCCACTATGAGG 59.161 55.000 8.16 3.47 0.00 3.86
3593 4647 4.072088 GCGTTGCACCGGTCGAAG 62.072 66.667 16.71 9.55 0.00 3.79
3611 4665 1.377333 GTAGCAGAAGGGGTGCACC 60.377 63.158 28.57 28.57 43.82 5.01
3740 4794 1.066071 GTGAAGAGGAAGGTGTAGCCC 60.066 57.143 0.00 0.00 38.26 5.19
3856 4910 4.525949 GGTAGTTCCCCGGCGAGC 62.526 72.222 9.30 0.00 0.00 5.03
3915 4969 0.456312 CAGTGCTCGTAGAACCCGAC 60.456 60.000 0.00 0.00 34.09 4.79
4160 5214 4.462133 TCTTATAGGTCTTCCAGTCCTCG 58.538 47.826 0.00 0.00 35.42 4.63
4256 5313 3.730362 GCAATTTGTGTGTTTTGCAACCC 60.730 43.478 0.00 0.00 43.00 4.11
4257 5314 3.424487 GCAATTTGTGTGTTTTGCAACC 58.576 40.909 0.00 0.00 43.00 3.77
4261 5318 4.554200 CAGTTTGCAATTTGTGTGTTTTGC 59.446 37.500 0.00 0.00 43.60 3.68
4262 5319 5.564504 CACAGTTTGCAATTTGTGTGTTTTG 59.435 36.000 24.65 7.71 36.92 2.44
4263 5320 5.687828 CACAGTTTGCAATTTGTGTGTTTT 58.312 33.333 24.65 0.83 36.92 2.43
4304 5364 9.403583 ACTTTGAAACTTTACATCCTACAAGAA 57.596 29.630 0.00 0.00 0.00 2.52
4305 5365 8.974060 ACTTTGAAACTTTACATCCTACAAGA 57.026 30.769 0.00 0.00 0.00 3.02
4351 5411 1.528586 CAAAGCCTTGACACGTCTCAG 59.471 52.381 0.00 0.00 34.14 3.35
4352 5412 1.581934 CAAAGCCTTGACACGTCTCA 58.418 50.000 0.00 0.00 34.14 3.27
4353 5413 0.868406 CCAAAGCCTTGACACGTCTC 59.132 55.000 0.00 0.00 34.14 3.36
4354 5414 0.535102 CCCAAAGCCTTGACACGTCT 60.535 55.000 0.00 0.00 34.14 4.18
4377 5440 1.585002 GCGCGCAAACAAACACAGA 60.585 52.632 29.10 0.00 0.00 3.41
4378 5441 2.904549 CGCGCGCAAACAAACACAG 61.905 57.895 32.61 5.79 0.00 3.66
4380 5443 2.947109 ACGCGCGCAAACAAACAC 60.947 55.556 32.58 0.00 0.00 3.32
4382 5445 1.536462 AATCACGCGCGCAAACAAAC 61.536 50.000 32.58 0.00 0.00 2.93
4412 5480 6.817765 ATAAATAAATAGGCCCATCACGTG 57.182 37.500 9.94 9.94 0.00 4.49
4446 5514 1.066358 GCTTACTTAAGGCCCGTCACT 60.066 52.381 7.53 0.00 33.95 3.41
4451 5519 1.729284 TTTCGCTTACTTAAGGCCCG 58.271 50.000 7.53 4.31 33.95 6.13
4466 5535 5.424121 AGTGACCTGATTTTGAGTTTTCG 57.576 39.130 0.00 0.00 0.00 3.46
4493 5582 0.581529 TTGTCAGCACGCGAGAAAAG 59.418 50.000 15.93 0.00 0.00 2.27
4502 5591 2.179547 TGCACCACTTGTCAGCACG 61.180 57.895 0.00 0.00 0.00 5.34
4540 5629 9.628500 AACTAGGAAAAACAACTTCTAGAATGT 57.372 29.630 5.44 5.76 0.00 2.71
4543 5632 9.675464 TGAAACTAGGAAAAACAACTTCTAGAA 57.325 29.630 4.81 4.81 0.00 2.10
4544 5633 9.847224 ATGAAACTAGGAAAAACAACTTCTAGA 57.153 29.630 0.00 0.00 0.00 2.43
4743 5833 9.762933 TGATTTCCTATTTGTTTCCTTGAAAAG 57.237 29.630 0.00 0.00 45.69 2.27
4806 5898 2.554032 AGATGTGCTTTTGGGTTCTTCG 59.446 45.455 0.00 0.00 0.00 3.79
4807 5899 3.319122 ACAGATGTGCTTTTGGGTTCTTC 59.681 43.478 0.00 0.00 0.00 2.87
4858 5950 5.175127 GTGCTTCTCAAAAAGGGAAAAACA 58.825 37.500 0.00 0.00 0.00 2.83
4865 5957 1.600413 GCACGTGCTTCTCAAAAAGGG 60.600 52.381 32.55 0.00 38.21 3.95
4882 5976 2.346099 ACAACACAACAACACAGCAC 57.654 45.000 0.00 0.00 0.00 4.40
4885 5979 3.848272 AGGAACAACACAACAACACAG 57.152 42.857 0.00 0.00 0.00 3.66
4892 5986 3.404899 TCCCGATAAGGAACAACACAAC 58.595 45.455 0.00 0.00 45.00 3.32
4894 5988 3.773418 TTCCCGATAAGGAACAACACA 57.227 42.857 0.00 0.00 41.08 3.72
4907 6001 0.394352 GTGCTTCCATGGTTCCCGAT 60.394 55.000 12.58 0.00 0.00 4.18
4909 6003 0.680921 ATGTGCTTCCATGGTTCCCG 60.681 55.000 12.58 0.00 0.00 5.14
4930 6024 4.639755 CAGTTGCCCTTCCAAAACAAAAAT 59.360 37.500 0.00 0.00 0.00 1.82
4936 6030 1.480545 ACACAGTTGCCCTTCCAAAAC 59.519 47.619 0.00 0.00 0.00 2.43
4937 6031 1.859302 ACACAGTTGCCCTTCCAAAA 58.141 45.000 0.00 0.00 0.00 2.44
4938 6032 1.480137 CAACACAGTTGCCCTTCCAAA 59.520 47.619 0.00 0.00 0.00 3.28
4947 6041 2.497107 ATGCTGAACAACACAGTTGC 57.503 45.000 9.60 0.00 37.64 4.17
4985 6079 7.735480 AAGCACAGCTGTGTTTTCCTATAAAAG 60.735 37.037 39.30 15.48 45.08 2.27
4990 6084 3.490348 AAGCACAGCTGTGTTTTCCTAT 58.510 40.909 39.30 20.50 45.08 2.57
5017 6111 6.489700 TGATAAGCACAATTGTCCTTCTTGAA 59.510 34.615 17.95 1.12 0.00 2.69
5018 6112 6.003326 TGATAAGCACAATTGTCCTTCTTGA 58.997 36.000 17.95 1.50 0.00 3.02
5019 6113 6.088824 GTGATAAGCACAATTGTCCTTCTTG 58.911 40.000 17.95 1.89 46.91 3.02
5044 6138 1.021968 AAAGCTTTTTCGCGAGTGGT 58.978 45.000 9.59 3.76 34.40 4.16
5053 6147 3.914984 GGGGGAGCAAAGCTTTTTC 57.085 52.632 9.53 10.20 39.88 2.29
5068 6162 5.436175 AGTTTTGAAAGATTTTTGTGGGGG 58.564 37.500 0.00 0.00 0.00 5.40
5122 6216 8.642935 TTTTTGGGATCTTCCTTTTTGTTTTT 57.357 26.923 0.00 0.00 36.57 1.94
5123 6217 8.821686 ATTTTTGGGATCTTCCTTTTTGTTTT 57.178 26.923 0.00 0.00 36.57 2.43
5161 6255 2.481952 GGCGCATCCACAGATTTAGATC 59.518 50.000 10.83 0.00 34.01 2.75
5184 6278 2.562912 CGCCACATGTCAAGCACC 59.437 61.111 11.42 0.00 0.00 5.01
5185 6279 1.915614 CTCCGCCACATGTCAAGCAC 61.916 60.000 11.42 0.00 0.00 4.40
5205 6299 4.373116 TCAAGTCGCCCGTCCAGC 62.373 66.667 0.00 0.00 0.00 4.85
5216 6310 1.444553 CCCGAGAGTGCGTCAAGTC 60.445 63.158 0.00 0.00 0.00 3.01
5224 6318 1.866853 CTTTTTGGGCCCGAGAGTGC 61.867 60.000 19.37 0.00 0.00 4.40
5226 6320 0.537371 CACTTTTTGGGCCCGAGAGT 60.537 55.000 19.37 19.53 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.