Multiple sequence alignment - TraesCS2A01G038900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G038900 chr2A 100.000 5504 0 0 1 5504 16319553 16325056 0.000000e+00 10165.0
1 TraesCS2A01G038900 chr2A 74.227 1261 261 48 3243 4475 771760949 771759725 2.320000e-128 470.0
2 TraesCS2A01G038900 chr2A 73.719 917 179 43 3230 4105 773727465 773728360 8.960000e-78 302.0
3 TraesCS2A01G038900 chr2A 74.554 617 120 26 1972 2566 754111269 754110668 9.220000e-58 235.0
4 TraesCS2A01G038900 chr2A 73.599 678 101 44 1088 1720 754125431 754124787 7.280000e-44 189.0
5 TraesCS2A01G038900 chr2A 85.567 97 10 4 3382 3476 595999105 595999199 1.260000e-16 99.0
6 TraesCS2A01G038900 chr2B 93.536 3218 172 23 4 3201 25353041 25349840 0.000000e+00 4758.0
7 TraesCS2A01G038900 chr2B 93.659 1656 78 11 3228 4875 25349763 25348127 0.000000e+00 2451.0
8 TraesCS2A01G038900 chr2B 92.665 409 28 1 5096 5504 25347369 25346963 6.140000e-164 588.0
9 TraesCS2A01G038900 chr2B 78.470 562 97 17 4039 4586 789555933 789556484 4.080000e-91 346.0
10 TraesCS2A01G038900 chr2B 89.726 146 13 2 4877 5022 25347928 25347785 9.420000e-43 185.0
11 TraesCS2A01G038900 chr2B 87.342 79 9 1 2948 3026 6321941 6321864 7.590000e-14 89.8
12 TraesCS2A01G038900 chr2B 100.000 39 0 0 3192 3230 25349829 25349791 7.650000e-09 73.1
13 TraesCS2A01G038900 chr2D 89.118 1213 85 21 3539 4724 13938454 13937262 0.000000e+00 1465.0
14 TraesCS2A01G038900 chr2D 81.393 1005 141 22 1772 2750 13940671 13939687 0.000000e+00 778.0
15 TraesCS2A01G038900 chr2D 82.446 695 90 16 1036 1719 13941469 13940796 3.700000e-161 579.0
16 TraesCS2A01G038900 chr2D 90.798 163 12 3 4875 5036 13937143 13936983 1.200000e-51 215.0
17 TraesCS2A01G038900 chr2D 91.954 87 7 0 4789 4875 13937261 13937175 7.490000e-24 122.0
18 TraesCS2A01G038900 chr7B 78.468 1175 158 61 1727 2853 657549007 657547880 0.000000e+00 680.0
19 TraesCS2A01G038900 chr7B 74.561 684 114 34 1072 1720 657548523 657547865 1.530000e-60 244.0
20 TraesCS2A01G038900 chr7A 81.224 490 79 7 3243 3727 677889648 677889167 3.110000e-102 383.0
21 TraesCS2A01G038900 chr7A 81.283 374 53 13 1872 2240 677930303 677929942 2.510000e-73 287.0
22 TraesCS2A01G038900 chr7A 80.282 284 43 8 1448 1720 677890077 677889796 9.350000e-48 202.0
23 TraesCS2A01G038900 chr7A 76.966 356 74 7 3243 3593 613711374 613711726 4.350000e-46 196.0
24 TraesCS2A01G038900 chr1A 75.455 770 137 37 1818 2548 34383201 34383957 1.480000e-85 327.0
25 TraesCS2A01G038900 chr1A 79.909 219 38 3 1085 1297 34383607 34383825 7.380000e-34 156.0
26 TraesCS2A01G038900 chr1A 78.014 141 27 4 2701 2837 34384097 34384237 9.820000e-13 86.1
27 TraesCS2A01G038900 chr6B 74.189 647 140 16 1805 2429 67994964 67995605 1.530000e-60 244.0
28 TraesCS2A01G038900 chr6B 75.768 293 64 6 3243 3531 254029848 254029559 2.070000e-29 141.0
29 TraesCS2A01G038900 chr7D 83.721 258 33 9 2945 3197 126966805 126966552 9.220000e-58 235.0
30 TraesCS2A01G038900 chr7D 78.903 237 41 8 2957 3191 43042189 43041960 9.550000e-33 152.0
31 TraesCS2A01G038900 chr4B 83.534 249 35 6 2952 3197 387337108 387337353 1.540000e-55 228.0
32 TraesCS2A01G038900 chr4B 81.673 251 36 9 2952 3198 665809732 665809976 3.360000e-47 200.0
33 TraesCS2A01G038900 chr5B 83.534 249 34 7 2952 3198 616650778 616650535 5.550000e-55 226.0
34 TraesCS2A01G038900 chr5B 76.943 386 78 9 3245 3624 386153294 386153674 5.590000e-50 209.0
35 TraesCS2A01G038900 chr1B 73.453 727 136 38 1881 2566 53925750 53926460 2.580000e-53 220.0
36 TraesCS2A01G038900 chr4D 77.062 388 80 8 3243 3624 198582330 198582714 1.200000e-51 215.0
37 TraesCS2A01G038900 chr6A 76.658 407 78 15 3228 3624 36691247 36691646 5.590000e-50 209.0
38 TraesCS2A01G038900 chr3B 76.804 388 81 8 3243 3624 534148952 534148568 5.590000e-50 209.0
39 TraesCS2A01G038900 chr3B 92.308 52 4 0 4512 4563 765126524 765126575 2.130000e-09 75.0
40 TraesCS2A01G038900 chr3B 100.000 28 0 0 876 903 819295645 819295672 1.000000e-02 52.8
41 TraesCS2A01G038900 chr3A 81.102 254 44 3 2945 3197 441567024 441567274 3.360000e-47 200.0
42 TraesCS2A01G038900 chr5A 80.478 251 39 9 2952 3198 705771686 705771930 3.390000e-42 183.0
43 TraesCS2A01G038900 chr4A 84.066 182 23 5 3019 3197 229509424 229509602 2.640000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G038900 chr2A 16319553 16325056 5503 False 10165.00 10165 100.0000 1 5504 1 chr2A.!!$F1 5503
1 TraesCS2A01G038900 chr2A 771759725 771760949 1224 True 470.00 470 74.2270 3243 4475 1 chr2A.!!$R3 1232
2 TraesCS2A01G038900 chr2A 773727465 773728360 895 False 302.00 302 73.7190 3230 4105 1 chr2A.!!$F3 875
3 TraesCS2A01G038900 chr2A 754110668 754111269 601 True 235.00 235 74.5540 1972 2566 1 chr2A.!!$R1 594
4 TraesCS2A01G038900 chr2B 25346963 25353041 6078 True 1611.02 4758 93.9172 4 5504 5 chr2B.!!$R2 5500
5 TraesCS2A01G038900 chr2B 789555933 789556484 551 False 346.00 346 78.4700 4039 4586 1 chr2B.!!$F1 547
6 TraesCS2A01G038900 chr2D 13936983 13941469 4486 True 631.80 1465 87.1418 1036 5036 5 chr2D.!!$R1 4000
7 TraesCS2A01G038900 chr7B 657547865 657549007 1142 True 462.00 680 76.5145 1072 2853 2 chr7B.!!$R1 1781
8 TraesCS2A01G038900 chr7A 677889167 677890077 910 True 292.50 383 80.7530 1448 3727 2 chr7A.!!$R2 2279
9 TraesCS2A01G038900 chr6B 67994964 67995605 641 False 244.00 244 74.1890 1805 2429 1 chr6B.!!$F1 624
10 TraesCS2A01G038900 chr1B 53925750 53926460 710 False 220.00 220 73.4530 1881 2566 1 chr1B.!!$F1 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 568 0.106268 TGTTGATGGTTGGTGCTGGT 60.106 50.0 0.0 0.0 0.00 4.00 F
815 835 0.461870 CCCAAATCAGACGATGGCGA 60.462 55.0 0.0 0.0 41.64 5.54 F
922 942 1.238439 TGGTGCAGCAAAGTCTTAGC 58.762 50.0 17.8 0.0 0.00 3.09 F
2188 2305 0.740868 TTCGCAGCCTGAAGAATCCG 60.741 55.0 0.0 0.0 0.00 4.18 F
3097 3963 0.179056 TAGCTGGCGCCTATGGTTTC 60.179 55.0 29.7 7.3 36.60 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1510 1536 0.395312 TGAGGAAAGACACGAACCCC 59.605 55.0 0.00 0.00 0.00 4.95 R
1722 1795 0.541063 TCAGCGGTACTCCCAAGACA 60.541 55.0 0.00 0.00 0.00 3.41 R
2392 2526 0.965439 GTTGTGGTAAGCATGCCCAA 59.035 50.0 15.66 5.32 0.00 4.12 R
3695 4684 1.413382 GCGATAAGCTCACCATCTCG 58.587 55.0 0.00 0.00 44.04 4.04 R
4818 5910 0.542333 TTCCAACTGAACGTCACCCA 59.458 50.0 0.00 0.00 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 78 8.885722 TGGTACGTATGGTTCAGAATTAATTTC 58.114 33.333 1.43 0.00 34.31 2.17
108 110 6.072119 ACGTTTTTCTTGAAACTTCCTCTTGT 60.072 34.615 0.00 0.00 37.37 3.16
148 150 2.578586 TACACCTACCCTCTCGCCCC 62.579 65.000 0.00 0.00 0.00 5.80
158 160 3.066190 CTCGCCCCCGTGTAGTCA 61.066 66.667 0.00 0.00 35.54 3.41
218 235 2.654912 CGCCGTCGTTGGTGAAGTC 61.655 63.158 3.62 0.00 42.25 3.01
249 266 2.511373 CTAGCGGTGCATTGGCGA 60.511 61.111 0.00 0.00 45.35 5.54
258 275 1.263484 GTGCATTGGCGATGAGATCTG 59.737 52.381 19.01 0.00 45.35 2.90
286 303 1.284408 GATCTAGAGTGCGGAGGCG 59.716 63.158 0.00 0.00 44.10 5.52
311 331 3.402681 CTCCTCCGGCATGGGTGT 61.403 66.667 0.00 0.00 38.76 4.16
326 346 3.047280 TGTAACAGCCAAGCGCGG 61.047 61.111 8.83 0.00 44.76 6.46
360 380 4.937431 GGAGGTATGGCGGCAGGC 62.937 72.222 19.29 12.32 44.11 4.85
382 402 1.618888 GGCCCGGTCTGAGCCTATATA 60.619 57.143 11.07 0.00 43.62 0.86
383 403 1.477295 GCCCGGTCTGAGCCTATATAC 59.523 57.143 0.00 0.00 0.00 1.47
410 430 2.965462 GCTACGCCATGCCGGTAC 60.965 66.667 1.90 0.00 36.97 3.34
417 437 2.235016 CCATGCCGGTACTTACGCG 61.235 63.158 3.53 3.53 0.00 6.01
454 474 0.317770 GACATGCACGTTTGGGTGTG 60.318 55.000 0.00 0.00 40.08 3.82
524 544 2.526046 CCTCCTTCCGGTGGTGGTT 61.526 63.158 21.05 0.00 38.80 3.67
530 550 2.281484 CCGGTGGTGGTTGGTCTG 60.281 66.667 0.00 0.00 0.00 3.51
546 566 1.267806 GTCTGTTGATGGTTGGTGCTG 59.732 52.381 0.00 0.00 0.00 4.41
548 568 0.106268 TGTTGATGGTTGGTGCTGGT 60.106 50.000 0.00 0.00 0.00 4.00
558 578 1.379044 GGTGCTGGTGGATCTTGGG 60.379 63.158 0.00 0.00 0.00 4.12
595 615 2.128771 AGTGGTGGCATGATGGTTAC 57.871 50.000 0.00 0.00 0.00 2.50
602 622 1.406887 GGCATGATGGTTACGTGGAGT 60.407 52.381 0.00 0.00 0.00 3.85
623 643 1.498865 CTGCGTGACTTGGTGGTGAC 61.499 60.000 0.00 0.00 0.00 3.67
645 665 4.323477 CCGGTTGCGAGTTGGGGA 62.323 66.667 0.00 0.00 0.00 4.81
646 666 2.742372 CGGTTGCGAGTTGGGGAG 60.742 66.667 0.00 0.00 0.00 4.30
647 667 2.747686 GGTTGCGAGTTGGGGAGA 59.252 61.111 0.00 0.00 0.00 3.71
648 668 1.299976 GGTTGCGAGTTGGGGAGAT 59.700 57.895 0.00 0.00 0.00 2.75
649 669 0.539986 GGTTGCGAGTTGGGGAGATA 59.460 55.000 0.00 0.00 0.00 1.98
650 670 1.141053 GGTTGCGAGTTGGGGAGATAT 59.859 52.381 0.00 0.00 0.00 1.63
652 672 1.496060 TGCGAGTTGGGGAGATATGT 58.504 50.000 0.00 0.00 0.00 2.29
654 674 1.270358 GCGAGTTGGGGAGATATGTCC 60.270 57.143 10.49 10.49 35.64 4.02
655 675 1.000163 CGAGTTGGGGAGATATGTCCG 60.000 57.143 12.50 0.00 37.50 4.79
700 720 3.142162 CCATGGCGAGCAATGGCA 61.142 61.111 17.59 0.00 40.30 4.92
720 740 3.206150 CAGTGTCTATGCACCATTACCC 58.794 50.000 0.00 0.00 40.04 3.69
741 761 3.181479 CCTGTTGAAGGCATCATCATTGG 60.181 47.826 4.17 0.51 39.93 3.16
791 811 0.912486 AGGAGAAACCCTTGATCCGG 59.088 55.000 0.00 0.00 40.05 5.14
797 817 3.231298 CCCTTGATCCGGGTCTCC 58.769 66.667 17.40 0.00 36.91 3.71
800 820 1.271840 CCTTGATCCGGGTCTCCCAA 61.272 60.000 17.40 0.84 45.83 4.12
804 824 0.837272 GATCCGGGTCTCCCAAATCA 59.163 55.000 7.71 0.00 45.83 2.57
813 833 1.134401 TCTCCCAAATCAGACGATGGC 60.134 52.381 0.00 0.00 30.13 4.40
815 835 0.461870 CCCAAATCAGACGATGGCGA 60.462 55.000 0.00 0.00 41.64 5.54
819 839 4.829518 TCAGACGATGGCGACGCG 62.830 66.667 14.61 3.53 41.64 6.01
823 843 2.842582 GACGATGGCGACGCGTTAC 61.843 63.158 15.53 8.78 42.73 2.50
836 856 4.049186 GACGCGTTACATGTCATTATCCT 58.951 43.478 15.53 0.00 32.91 3.24
874 894 4.530857 AGCGGCGTGGCATCTACC 62.531 66.667 9.37 0.00 34.64 3.18
922 942 1.238439 TGGTGCAGCAAAGTCTTAGC 58.762 50.000 17.80 0.00 0.00 3.09
961 981 6.127111 TGCAGCATATGTAATCCCATTTGTTT 60.127 34.615 4.29 0.00 0.00 2.83
964 984 9.467258 CAGCATATGTAATCCCATTTGTTTAAG 57.533 33.333 4.29 0.00 0.00 1.85
1062 1082 2.572556 TGCATTGCCATTCCCTCAAAAT 59.427 40.909 6.12 0.00 0.00 1.82
1077 1097 8.110860 TCCCTCAAAATGAAAAGAGTAATGAC 57.889 34.615 0.00 0.00 0.00 3.06
1142 1162 4.763793 TCTTTTCTCTTTTGATGGGAGCTG 59.236 41.667 0.00 0.00 0.00 4.24
1462 1487 9.462174 TCATTTCTTGCTAGTTGTTATTTGTTG 57.538 29.630 0.00 0.00 0.00 3.33
1510 1536 7.437793 AAGCCAATCAACCATATTTGTTTTG 57.562 32.000 0.00 0.00 0.00 2.44
1516 1542 5.859495 TCAACCATATTTGTTTTGGGGTTC 58.141 37.500 0.00 0.00 35.11 3.62
1518 1544 3.898741 ACCATATTTGTTTTGGGGTTCGT 59.101 39.130 0.00 0.00 34.72 3.85
1551 1577 6.862209 TCATTACCATGTTCTATTTTGGTGC 58.138 36.000 3.78 0.00 42.32 5.01
1586 1612 2.226962 AAAATGGCCAGACATCTGCT 57.773 45.000 13.05 0.00 42.47 4.24
1760 1833 8.380099 ACCGCTGAGGGAATTATACATATAAAA 58.620 33.333 1.66 0.00 46.96 1.52
1803 1905 3.891977 TCTGACTAATGCAGGGCTACTAG 59.108 47.826 0.00 0.00 34.20 2.57
2188 2305 0.740868 TTCGCAGCCTGAAGAATCCG 60.741 55.000 0.00 0.00 0.00 4.18
2225 2342 7.859325 AAGATTAATGTTGTATTGGCTACGT 57.141 32.000 0.00 0.00 32.61 3.57
2374 2507 4.286707 TCACCGAATTGATTCCTCTCCTA 58.713 43.478 0.00 0.00 33.28 2.94
2449 2583 9.602568 CCTCCCTATTTCTTTCTTACTACTTTC 57.397 37.037 0.00 0.00 0.00 2.62
2683 2833 8.531146 CCTTCCACATTACCATGTTCTATTTTT 58.469 33.333 0.00 0.00 41.16 1.94
2706 2856 3.755628 CATGGTGCCACTGCCAGC 61.756 66.667 0.00 0.00 38.27 4.85
2708 2858 2.605607 ATGGTGCCACTGCCAGCTA 61.606 57.895 0.00 0.00 38.27 3.32
2790 3636 7.008992 CGGGTTGAAATCTAAGTTTCTACTACG 59.991 40.741 11.55 11.98 40.89 3.51
2855 3721 1.135094 AGGAGCCTGTCATGGTATGG 58.865 55.000 0.00 0.00 0.00 2.74
2885 3751 7.895975 TTGATTGTTTGTTTTGTTGTGATCA 57.104 28.000 0.00 0.00 0.00 2.92
2893 3759 9.771915 GTTTGTTTTGTTGTGATCAAAAATCAT 57.228 25.926 0.00 0.00 43.27 2.45
2956 3822 0.911769 TGAAGCTCCCCTGTGGTATG 59.088 55.000 0.00 0.00 34.77 2.39
2963 3829 1.009552 TCCCCTGTGGTATGGATCAGT 59.990 52.381 0.00 0.00 34.77 3.41
2964 3830 2.248950 TCCCCTGTGGTATGGATCAGTA 59.751 50.000 0.00 0.00 34.77 2.74
2973 3839 6.267699 TGTGGTATGGATCAGTATTGACCTAG 59.732 42.308 0.00 0.00 35.83 3.02
3006 3872 8.311836 GCTGTTATATATACCTCTTGTAAGCCA 58.688 37.037 0.00 0.00 31.94 4.75
3013 3879 2.161855 CCTCTTGTAAGCCATTGCACA 58.838 47.619 0.00 0.00 41.13 4.57
3014 3880 2.756760 CCTCTTGTAAGCCATTGCACAT 59.243 45.455 0.00 0.00 41.13 3.21
3027 3893 5.450826 GCCATTGCACATGATAAGTTGATCA 60.451 40.000 0.00 0.00 37.57 2.92
3065 3931 6.248569 ACATTTGTAACCTCTCCCGATATT 57.751 37.500 0.00 0.00 0.00 1.28
3079 3945 4.346709 TCCCGATATTGTGAAGATTGGCTA 59.653 41.667 0.00 0.00 33.18 3.93
3089 3955 3.764160 GATTGGCTAGCTGGCGCCT 62.764 63.158 29.70 10.43 46.42 5.52
3091 3957 1.772819 ATTGGCTAGCTGGCGCCTAT 61.773 55.000 29.70 15.76 46.42 2.57
3097 3963 0.179056 TAGCTGGCGCCTATGGTTTC 60.179 55.000 29.70 7.30 36.60 2.78
3098 3964 2.481471 GCTGGCGCCTATGGTTTCC 61.481 63.158 29.70 0.00 0.00 3.13
3122 3988 4.017126 CCCTTCATGTTAGAGGGGTTTTC 58.983 47.826 14.45 0.00 46.81 2.29
3148 4014 4.081309 CGTTAAATCCTTGTGTCCCCTCTA 60.081 45.833 0.00 0.00 0.00 2.43
3151 4017 7.472945 CGTTAAATCCTTGTGTCCCCTCTATAT 60.473 40.741 0.00 0.00 0.00 0.86
3153 4019 6.848562 AATCCTTGTGTCCCCTCTATATTT 57.151 37.500 0.00 0.00 0.00 1.40
3158 4024 8.787818 TCCTTGTGTCCCCTCTATATTTATTTT 58.212 33.333 0.00 0.00 0.00 1.82
3185 4051 1.898079 CATCGTTTCATTTGCGTGTCG 59.102 47.619 0.00 0.00 0.00 4.35
3376 4355 5.050091 CGTTACTAATGAGGTCATTGATGGC 60.050 44.000 14.29 3.03 45.34 4.40
3613 4602 2.009774 CGGTCTGAACAATCCCATGTC 58.990 52.381 0.00 0.00 31.81 3.06
3640 4629 6.018016 CCTTTATTGCCTGAAAAACAGTTTGG 60.018 38.462 0.00 0.00 44.40 3.28
3695 4684 5.348724 TCAACGTGACTTTGATATCAAGCTC 59.651 40.000 17.28 15.21 37.15 4.09
3752 4742 7.839680 TTTCTCACATGGATGCTATCTACTA 57.160 36.000 0.00 0.00 0.00 1.82
3781 4772 3.130516 TCCCTGTCAATGCTAGTACTTCG 59.869 47.826 0.00 0.00 0.00 3.79
3813 4819 6.318900 GCAACTATAGCCACCTTGAATAAGTT 59.681 38.462 0.00 0.00 31.80 2.66
3823 4829 3.256631 CCTTGAATAAGTTGCCACTTGCT 59.743 43.478 13.20 0.10 43.54 3.91
3824 4830 4.458989 CCTTGAATAAGTTGCCACTTGCTA 59.541 41.667 13.20 0.00 43.54 3.49
4190 5253 4.356405 TGATATGTTACCCTGGAGCATG 57.644 45.455 0.00 0.00 0.00 4.06
4266 5330 7.010552 GTGTTGAGTATGTGTATGATGGAAGTC 59.989 40.741 0.00 0.00 0.00 3.01
4349 5419 4.386711 TCAAAGATAGAGGCTCATGCATG 58.613 43.478 21.07 21.07 41.91 4.06
4409 5479 8.840833 TTGTCTATCTACAAACATGTTGCTAA 57.159 30.769 12.82 0.00 36.45 3.09
4560 5649 5.882557 ACTGATTTATGTACTGGCTCCAAAG 59.117 40.000 0.00 0.00 0.00 2.77
4563 5652 6.719370 TGATTTATGTACTGGCTCCAAAGTTT 59.281 34.615 0.00 0.00 0.00 2.66
4564 5653 6.969993 TTTATGTACTGGCTCCAAAGTTTT 57.030 33.333 0.00 0.00 0.00 2.43
4565 5654 8.644374 ATTTATGTACTGGCTCCAAAGTTTTA 57.356 30.769 0.00 0.00 0.00 1.52
4650 5739 4.697514 TCTCAGCAGGAAATTAATCTCCG 58.302 43.478 2.07 0.00 36.78 4.63
4682 5771 2.032620 AGTAGGGATGCTTCGATCGTT 58.967 47.619 15.94 0.00 0.00 3.85
4719 5809 2.999063 AAGGCATGCAGGTTGGGC 60.999 61.111 21.36 0.00 0.00 5.36
4724 5814 2.678934 ATGCAGGTTGGGCTGCTG 60.679 61.111 0.00 0.00 45.87 4.41
4749 5841 8.382405 TGCAAGCTAAGTGGATATTTGGATATA 58.618 33.333 0.00 0.00 0.00 0.86
4750 5842 9.401058 GCAAGCTAAGTGGATATTTGGATATAT 57.599 33.333 0.00 0.00 0.00 0.86
4792 5884 3.772636 CACATCCAGTGTCTCGCG 58.227 61.111 0.00 0.00 43.40 5.87
4802 5894 0.443869 GTGTCTCGCGTTGATGCATT 59.556 50.000 5.77 0.00 34.15 3.56
4808 5900 0.027194 CGCGTTGATGCATTCAGAGG 59.973 55.000 0.00 0.00 35.27 3.69
4818 5910 1.139853 GCATTCAGAGGTCCTTCCGAT 59.860 52.381 0.00 0.00 41.99 4.18
4863 5955 6.073440 TCACACGTAAACTGGAAATTTCTAGC 60.073 38.462 26.26 12.46 39.14 3.42
4921 6210 2.154462 CTCCAGTTTTACCTGCCTGTG 58.846 52.381 0.00 0.00 0.00 3.66
4946 6235 3.726517 CTGCTTCAACACCGCCCG 61.727 66.667 0.00 0.00 0.00 6.13
4949 6238 2.047655 CTTCAACACCGCCCGCTA 60.048 61.111 0.00 0.00 0.00 4.26
4950 6239 2.047655 TTCAACACCGCCCGCTAG 60.048 61.111 0.00 0.00 0.00 3.42
4952 6241 2.501223 TTCAACACCGCCCGCTAGAG 62.501 60.000 0.00 0.00 0.00 2.43
4973 6262 2.163010 GGTCAGTTGCATGATGAGTTGG 59.837 50.000 0.00 0.00 0.00 3.77
4974 6263 2.163010 GTCAGTTGCATGATGAGTTGGG 59.837 50.000 0.00 0.00 0.00 4.12
5039 6351 5.076182 TGAATAAACTCATTTGACCTGGCA 58.924 37.500 0.00 0.00 0.00 4.92
5043 6355 4.961438 AACTCATTTGACCTGGCATTTT 57.039 36.364 0.00 0.00 0.00 1.82
5045 6357 6.418057 AACTCATTTGACCTGGCATTTTTA 57.582 33.333 0.00 0.00 0.00 1.52
5050 6362 8.076910 TCATTTGACCTGGCATTTTTATATGT 57.923 30.769 0.00 0.00 0.00 2.29
5057 6369 5.450412 CCTGGCATTTTTATATGTTCGCTGT 60.450 40.000 0.00 0.00 0.00 4.40
5060 6372 7.539436 TGGCATTTTTATATGTTCGCTGTTAA 58.461 30.769 0.00 0.00 0.00 2.01
5072 6384 1.396996 CGCTGTTAATTGACGGGAAGG 59.603 52.381 10.87 0.00 0.00 3.46
5075 6387 3.620472 GCTGTTAATTGACGGGAAGGGTA 60.620 47.826 10.87 0.00 0.00 3.69
5076 6388 4.777463 CTGTTAATTGACGGGAAGGGTAT 58.223 43.478 1.23 0.00 0.00 2.73
5083 6395 0.916086 ACGGGAAGGGTATTGCATGA 59.084 50.000 0.00 0.00 0.00 3.07
5087 6399 2.242043 GGAAGGGTATTGCATGATGGG 58.758 52.381 0.00 0.00 0.00 4.00
5162 6794 2.668457 GACACCATTGTAGTGCTTCGAG 59.332 50.000 0.00 0.00 38.87 4.04
5170 6802 2.018515 GTAGTGCTTCGAGGTAGAGCT 58.981 52.381 7.50 0.00 0.00 4.09
5182 6814 4.484236 GAGGTAGAGCTGATCGATGAATG 58.516 47.826 0.54 0.00 0.00 2.67
5189 6821 3.064931 GCTGATCGATGAATGCATCTCA 58.935 45.455 12.02 8.52 46.96 3.27
5197 6829 4.260661 CGATGAATGCATCTCACCTTCTTG 60.261 45.833 12.02 0.00 46.96 3.02
5236 6868 1.898574 CAAGGCCGGCCATGTATCC 60.899 63.158 45.13 17.82 38.92 2.59
5237 6869 2.382770 AAGGCCGGCCATGTATCCA 61.383 57.895 45.13 0.00 38.92 3.41
5264 6896 4.840005 GGAAGCTTCCGCGGAGGG 62.840 72.222 34.71 27.36 42.32 4.30
5326 6958 1.500396 GTCGTCAACGGGGATTTGC 59.500 57.895 2.31 0.00 40.29 3.68
5342 6974 2.284754 TTGCTTAACCATGCCTGACA 57.715 45.000 0.00 0.00 0.00 3.58
5343 6975 2.512692 TGCTTAACCATGCCTGACAT 57.487 45.000 0.00 0.00 40.66 3.06
5361 6993 3.902150 ACATGTGTGTACTCTCTGAACG 58.098 45.455 0.00 0.00 36.63 3.95
5366 6998 4.395231 TGTGTGTACTCTCTGAACGATAGG 59.605 45.833 0.00 0.00 43.77 2.57
5369 7001 5.475909 TGTGTACTCTCTGAACGATAGGTTT 59.524 40.000 0.00 0.00 39.50 3.27
5421 7053 1.739049 GACCCTCCATCAGCTCTCG 59.261 63.158 0.00 0.00 0.00 4.04
5439 7071 1.963855 GTGTGCACGCCCATGTACA 60.964 57.895 19.81 0.00 42.06 2.90
5450 7082 1.839994 CCCATGTACATGTCCTGTCCT 59.160 52.381 29.25 0.00 39.39 3.85
5491 7123 8.829612 CACATATGCATTTCTCTATGTGTTACA 58.170 33.333 21.84 0.00 43.05 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.263895 ACCATGCCTACCCTCTTGTA 57.736 50.000 0.00 0.00 0.00 2.41
35 36 1.838077 GTACCATGCCTACCCTCTTGT 59.162 52.381 0.00 0.00 0.00 3.16
42 43 1.690352 ACCATACGTACCATGCCTACC 59.310 52.381 0.00 0.00 0.00 3.18
76 78 6.049263 AGTTTCAAGAAAAACGTAGCTGAG 57.951 37.500 0.00 0.00 42.63 3.35
108 110 3.922375 AGTGACCAAGGGAATCCAAAAA 58.078 40.909 0.09 0.00 34.83 1.94
178 180 3.883549 GAGGGGAGGGCATGGAGC 61.884 72.222 0.00 0.00 44.65 4.70
179 181 3.174265 GGAGGGGAGGGCATGGAG 61.174 72.222 0.00 0.00 0.00 3.86
180 182 3.710631 AGGAGGGGAGGGCATGGA 61.711 66.667 0.00 0.00 0.00 3.41
183 185 2.288643 GAGAGGAGGGGAGGGCAT 59.711 66.667 0.00 0.00 0.00 4.40
235 252 3.459378 CTCATCGCCAATGCACCGC 62.459 63.158 0.00 0.00 37.32 5.68
236 253 1.162181 ATCTCATCGCCAATGCACCG 61.162 55.000 0.00 0.00 37.32 4.94
237 254 0.590195 GATCTCATCGCCAATGCACC 59.410 55.000 0.00 0.00 37.32 5.01
239 256 1.134310 ACAGATCTCATCGCCAATGCA 60.134 47.619 0.00 0.00 37.32 3.96
249 266 5.396485 AGATCAGAGCCTTACAGATCTCAT 58.604 41.667 0.00 0.00 40.93 2.90
304 324 0.960364 CGCTTGGCTGTTACACCCAT 60.960 55.000 0.00 0.00 0.00 4.00
311 331 3.047280 CACCGCGCTTGGCTGTTA 61.047 61.111 5.56 0.00 36.93 2.41
334 354 2.145865 CCATACCTCCGGCATCCTT 58.854 57.895 0.00 0.00 0.00 3.36
405 425 1.870901 GAGTGCCGCGTAAGTACCG 60.871 63.158 4.92 0.00 41.68 4.02
406 426 1.517913 GGAGTGCCGCGTAAGTACC 60.518 63.158 4.92 0.00 41.68 3.34
435 455 0.317770 CACACCCAAACGTGCATGTC 60.318 55.000 12.96 0.00 37.25 3.06
443 463 3.536498 GAAGCCGCACACCCAAACG 62.536 63.158 0.00 0.00 0.00 3.60
454 474 2.770587 CTTGCAGAACGTGAAGCCGC 62.771 60.000 0.00 0.00 0.00 6.53
524 544 1.979855 CACCAACCATCAACAGACCA 58.020 50.000 0.00 0.00 0.00 4.02
530 550 0.314935 CACCAGCACCAACCATCAAC 59.685 55.000 0.00 0.00 0.00 3.18
558 578 1.133976 ACTAGTGCTTGGCATGGGATC 60.134 52.381 0.00 0.00 41.91 3.36
565 585 1.073025 CCACCACTAGTGCTTGGCA 59.927 57.895 22.18 0.00 45.83 4.92
595 615 2.430921 GTCACGCAGGACTCCACG 60.431 66.667 8.55 8.55 34.92 4.94
602 622 2.425592 CCACCAAGTCACGCAGGA 59.574 61.111 0.00 0.00 0.00 3.86
644 664 2.890808 TTCACTGGCGGACATATCTC 57.109 50.000 0.00 0.00 0.00 2.75
645 665 3.627395 TTTTCACTGGCGGACATATCT 57.373 42.857 0.00 0.00 0.00 1.98
646 666 3.059597 CGATTTTCACTGGCGGACATATC 60.060 47.826 0.00 0.00 0.00 1.63
647 667 2.872245 CGATTTTCACTGGCGGACATAT 59.128 45.455 0.00 0.00 0.00 1.78
648 668 2.093921 TCGATTTTCACTGGCGGACATA 60.094 45.455 0.00 0.00 0.00 2.29
649 669 1.086696 CGATTTTCACTGGCGGACAT 58.913 50.000 0.00 0.00 0.00 3.06
650 670 0.034198 TCGATTTTCACTGGCGGACA 59.966 50.000 0.00 0.00 0.00 4.02
652 672 1.019278 GCTCGATTTTCACTGGCGGA 61.019 55.000 0.00 0.00 0.00 5.54
654 674 0.371645 GAGCTCGATTTTCACTGGCG 59.628 55.000 0.00 0.00 0.00 5.69
655 675 0.729690 GGAGCTCGATTTTCACTGGC 59.270 55.000 7.83 0.00 0.00 4.85
691 711 1.340308 TGCATAGACACTGCCATTGCT 60.340 47.619 0.00 0.00 38.89 3.91
700 720 3.115390 AGGGTAATGGTGCATAGACACT 58.885 45.455 0.00 0.00 40.52 3.55
720 740 3.697542 TCCAATGATGATGCCTTCAACAG 59.302 43.478 3.70 0.00 40.07 3.16
741 761 4.431809 CATGAGTGAGGAGATGTTGACTC 58.568 47.826 0.00 0.00 0.00 3.36
791 811 2.555199 CATCGTCTGATTTGGGAGACC 58.445 52.381 0.00 0.00 42.00 3.85
795 815 0.461870 CGCCATCGTCTGATTTGGGA 60.462 55.000 5.88 0.00 30.49 4.37
797 817 0.652592 GTCGCCATCGTCTGATTTGG 59.347 55.000 0.00 0.00 36.96 3.28
800 820 1.878522 GCGTCGCCATCGTCTGATT 60.879 57.895 5.75 0.00 36.96 2.57
804 824 3.042842 TAACGCGTCGCCATCGTCT 62.043 57.895 14.44 0.00 35.18 4.18
813 833 3.121463 GGATAATGACATGTAACGCGTCG 60.121 47.826 14.44 1.20 32.17 5.12
815 835 4.054780 AGGATAATGACATGTAACGCGT 57.945 40.909 5.58 5.58 0.00 6.01
819 839 7.630470 CTCGAGAAGGATAATGACATGTAAC 57.370 40.000 6.58 0.00 0.00 2.50
845 865 2.677003 CGCCGCTCCAAAACGATGT 61.677 57.895 0.00 0.00 0.00 3.06
874 894 2.040213 GACCCGCTGTCATCAATGCG 62.040 60.000 0.00 0.00 43.85 4.73
875 895 1.723870 GACCCGCTGTCATCAATGC 59.276 57.895 0.00 0.00 43.85 3.56
922 942 1.866601 TGCTGCATCATTAATCCGTCG 59.133 47.619 0.00 0.00 0.00 5.12
935 955 5.541101 ACAAATGGGATTACATATGCTGCAT 59.459 36.000 20.18 20.18 0.00 3.96
961 981 9.151471 CTCCTGTCGAGAAATAAATCAAACTTA 57.849 33.333 0.00 0.00 41.63 2.24
964 984 7.596749 TCTCCTGTCGAGAAATAAATCAAAC 57.403 36.000 0.00 0.00 44.94 2.93
1062 1082 9.890629 ATAGCTAATGTGTCATTACTCTTTTCA 57.109 29.630 0.00 0.00 0.00 2.69
1142 1162 6.116126 AGTACCTTCACTAAATCATTGAGGC 58.884 40.000 0.00 0.00 0.00 4.70
1172 1192 6.899393 AACTAAGGAGCATCAACAATGAAA 57.101 33.333 0.00 0.00 39.49 2.69
1258 1279 1.649321 AGCATGTCCAGAAGTCCTGA 58.351 50.000 0.00 0.00 45.78 3.86
1510 1536 0.395312 TGAGGAAAGACACGAACCCC 59.605 55.000 0.00 0.00 0.00 4.95
1516 1542 4.253685 ACATGGTAATGAGGAAAGACACG 58.746 43.478 0.00 0.00 37.24 4.49
1518 1544 6.126863 AGAACATGGTAATGAGGAAAGACA 57.873 37.500 0.00 0.00 37.24 3.41
1551 1577 4.261741 GCCATTTTAGATAGTGCACCATGG 60.262 45.833 14.63 11.19 33.18 3.66
1657 1685 7.534723 TCTAGCTAGAAAGTTTACCACTTCA 57.465 36.000 21.26 0.00 45.77 3.02
1705 1735 5.500234 CAAGACATCCATTCTTGGTAGGAA 58.500 41.667 4.48 0.00 44.25 3.36
1720 1793 0.824759 AGCGGTACTCCCAAGACATC 59.175 55.000 0.00 0.00 0.00 3.06
1722 1795 0.541063 TCAGCGGTACTCCCAAGACA 60.541 55.000 0.00 0.00 0.00 3.41
1760 1833 6.211584 TCAGAAAGTATAGTGGTTCTTGAGCT 59.788 38.462 0.00 0.00 0.00 4.09
1803 1905 5.633830 TCATGAAAGAAGTCAAGGCAATC 57.366 39.130 0.00 0.00 0.00 2.67
2060 2175 6.038714 ACAGAACCAACAAGAAAGCTTAGAAG 59.961 38.462 0.00 0.00 31.81 2.85
2188 2305 8.454106 ACAACATTAATCTTAACTGACTGCATC 58.546 33.333 0.00 0.00 0.00 3.91
2308 2425 2.223688 ACTTAGTAGCATGAGCAGCGAG 60.224 50.000 0.00 0.00 45.49 5.03
2392 2526 0.965439 GTTGTGGTAAGCATGCCCAA 59.035 50.000 15.66 5.32 0.00 4.12
2449 2583 5.106555 ACAAGAAGCATAAGGAAACATGACG 60.107 40.000 0.00 0.00 0.00 4.35
2522 2656 9.744468 ACAACAAAAATTGACAATAAGGACTAC 57.256 29.630 0.00 0.00 33.57 2.73
2706 2856 6.582636 TGTCTGGCCAATAAAGATAGTGTAG 58.417 40.000 7.01 0.00 0.00 2.74
2708 2858 5.435686 TGTCTGGCCAATAAAGATAGTGT 57.564 39.130 7.01 0.00 0.00 3.55
2765 3611 8.031277 TCGTAGTAGAAACTTAGATTTCAACCC 58.969 37.037 8.93 0.00 40.43 4.11
2790 3636 5.886960 ACTAATTCAGACATTTGTGCCTC 57.113 39.130 0.00 0.00 0.00 4.70
2855 3721 7.635587 CACAACAAAACAAACAATCAATAGTGC 59.364 33.333 0.00 0.00 0.00 4.40
2920 3786 4.704103 ACCCCTCTGCTCCGCTCA 62.704 66.667 0.00 0.00 0.00 4.26
2948 3814 4.968719 AGGTCAATACTGATCCATACCACA 59.031 41.667 0.00 0.00 32.55 4.17
2973 3839 7.469537 AGAGGTATATATAACAGCAGTGACC 57.530 40.000 10.41 0.00 0.00 4.02
3027 3893 7.357303 GTTACAAATGTCGTGGATTTACAAGT 58.643 34.615 0.00 0.00 0.00 3.16
3065 3931 1.679944 GCCAGCTAGCCAATCTTCACA 60.680 52.381 12.13 0.00 0.00 3.58
3079 3945 1.452108 GAAACCATAGGCGCCAGCT 60.452 57.895 31.54 11.17 44.37 4.24
3106 3972 2.374170 ACGTGGAAAACCCCTCTAACAT 59.626 45.455 0.00 0.00 0.00 2.71
3112 3978 3.192001 GGATTTAACGTGGAAAACCCCTC 59.808 47.826 9.96 0.42 0.00 4.30
3122 3988 2.486592 GGGACACAAGGATTTAACGTGG 59.513 50.000 0.00 0.00 31.83 4.94
3153 4019 9.643652 GCAAATGAAACGATGAAAAACAAAATA 57.356 25.926 0.00 0.00 0.00 1.40
3158 4024 4.800993 ACGCAAATGAAACGATGAAAAACA 59.199 33.333 0.00 0.00 0.00 2.83
3164 4030 2.410902 CGACACGCAAATGAAACGATGA 60.411 45.455 0.00 0.00 0.00 2.92
3174 4040 4.740268 TGTTAGAGATACGACACGCAAAT 58.260 39.130 0.00 0.00 0.00 2.32
3230 4174 4.103153 TCCTAAATCATGTAGAGGGCAAGG 59.897 45.833 0.00 0.00 0.00 3.61
3231 4175 5.296151 TCCTAAATCATGTAGAGGGCAAG 57.704 43.478 0.00 0.00 0.00 4.01
3376 4355 1.743252 GAGCCTCTTGACCAAGCGG 60.743 63.158 12.97 12.97 44.08 5.52
3489 4475 3.476552 TCGGACAGAAGCAACAAGAATT 58.523 40.909 0.00 0.00 0.00 2.17
3640 4629 8.907885 AGAATAATTCTAAATCTTTGTCTGGCC 58.092 33.333 0.00 0.00 38.49 5.36
3695 4684 1.413382 GCGATAAGCTCACCATCTCG 58.587 55.000 0.00 0.00 44.04 4.04
3752 4742 6.506538 ACTAGCATTGACAGGGAGAAATAT 57.493 37.500 0.00 0.00 0.00 1.28
3781 4772 4.010349 AGGTGGCTATAGTTGCTGAAAAC 58.990 43.478 0.84 0.00 0.00 2.43
3861 4883 8.642020 GTGTCTATCAAAAACTTCAATCATTGC 58.358 33.333 0.00 0.00 0.00 3.56
3928 4955 8.585189 TCTAGAAGACATTTCATCGATGATTG 57.415 34.615 27.75 26.47 36.56 2.67
4190 5253 5.605488 TCATCAGGGGGTAAGACTTTATACC 59.395 44.000 0.00 0.00 40.72 2.73
4266 5330 6.815641 ACTTCAGTACATTGCTAGAATGACAG 59.184 38.462 16.77 10.11 0.00 3.51
4570 5659 9.727627 GTAACACGTCTACATATTACTAGCTTT 57.272 33.333 0.00 0.00 0.00 3.51
4650 5739 2.772691 CCCTACTCTGACGGACCGC 61.773 68.421 15.39 7.62 0.00 5.68
4682 5771 1.350684 TGGACTGGAAGCACAAGCATA 59.649 47.619 0.00 0.00 45.49 3.14
4719 5809 1.747709 ATCCACTTAGCTTGCAGCAG 58.252 50.000 10.16 0.00 45.56 4.24
4724 5814 7.693969 ATATCCAAATATCCACTTAGCTTGC 57.306 36.000 0.00 0.00 0.00 4.01
4750 5842 9.434275 TGATATTCCTAGATGTTTCTCCTAACA 57.566 33.333 0.00 0.00 41.81 2.41
4792 5884 2.996631 AGGACCTCTGAATGCATCAAC 58.003 47.619 0.00 0.00 37.67 3.18
4802 5894 0.687757 CCCATCGGAAGGACCTCTGA 60.688 60.000 0.00 0.00 35.20 3.27
4808 5900 1.153628 CGTCACCCATCGGAAGGAC 60.154 63.158 0.00 0.00 0.00 3.85
4818 5910 0.542333 TTCCAACTGAACGTCACCCA 59.458 50.000 0.00 0.00 0.00 4.51
4863 5955 2.237143 TGCACTCCTAATGGACTCTTGG 59.763 50.000 0.00 0.00 37.46 3.61
4921 6210 2.260869 TGTTGAAGCAGCTTCCGCC 61.261 57.895 28.73 17.71 39.51 6.13
4926 6215 2.555547 GGCGGTGTTGAAGCAGCTT 61.556 57.895 7.60 7.60 34.99 3.74
4946 6235 2.680312 TCATGCAACTGACCTCTAGC 57.320 50.000 0.00 0.00 0.00 3.42
4948 6237 3.771479 ACTCATCATGCAACTGACCTCTA 59.229 43.478 0.00 0.00 0.00 2.43
4949 6238 2.570752 ACTCATCATGCAACTGACCTCT 59.429 45.455 0.00 0.00 0.00 3.69
4950 6239 2.983229 ACTCATCATGCAACTGACCTC 58.017 47.619 0.00 0.00 0.00 3.85
4952 6241 2.163010 CCAACTCATCATGCAACTGACC 59.837 50.000 0.00 0.00 0.00 4.02
4973 6262 1.596727 CGTACTCCTACTAGACACGCC 59.403 57.143 0.00 0.00 0.00 5.68
4974 6263 2.539274 CTCGTACTCCTACTAGACACGC 59.461 54.545 0.00 0.00 32.42 5.34
5015 6304 5.716228 TGCCAGGTCAAATGAGTTTATTCAT 59.284 36.000 0.00 0.00 39.42 2.57
5017 6306 5.643379 TGCCAGGTCAAATGAGTTTATTC 57.357 39.130 0.00 0.00 0.00 1.75
5023 6335 4.961438 AAAAATGCCAGGTCAAATGAGT 57.039 36.364 0.00 0.00 0.00 3.41
5024 6336 8.199449 ACATATAAAAATGCCAGGTCAAATGAG 58.801 33.333 0.00 0.00 0.00 2.90
5027 6339 7.706179 CGAACATATAAAAATGCCAGGTCAAAT 59.294 33.333 0.00 0.00 0.00 2.32
5043 6355 6.018588 CCCGTCAATTAACAGCGAACATATAA 60.019 38.462 0.00 0.00 0.00 0.98
5045 6357 4.272504 CCCGTCAATTAACAGCGAACATAT 59.727 41.667 0.00 0.00 0.00 1.78
5050 6362 2.459060 TCCCGTCAATTAACAGCGAA 57.541 45.000 0.00 0.00 0.00 4.70
5057 6369 3.949113 GCAATACCCTTCCCGTCAATTAA 59.051 43.478 0.00 0.00 0.00 1.40
5060 6372 1.283613 TGCAATACCCTTCCCGTCAAT 59.716 47.619 0.00 0.00 0.00 2.57
5072 6384 6.594788 ATTAACATCCCATCATGCAATACC 57.405 37.500 0.00 0.00 0.00 2.73
5075 6387 7.600231 TTGTATTAACATCCCATCATGCAAT 57.400 32.000 0.00 0.00 34.97 3.56
5076 6388 7.415592 TTTGTATTAACATCCCATCATGCAA 57.584 32.000 0.00 0.00 34.97 4.08
5083 6395 8.671028 GTTCGTACTTTTGTATTAACATCCCAT 58.329 33.333 0.00 0.00 37.24 4.00
5162 6794 2.992543 GCATTCATCGATCAGCTCTACC 59.007 50.000 0.00 0.00 0.00 3.18
5182 6814 0.322816 TGCCCAAGAAGGTGAGATGC 60.323 55.000 0.00 0.00 34.66 3.91
5197 6829 0.540597 ACAGCTTCCCTTCTTTGCCC 60.541 55.000 0.00 0.00 0.00 5.36
5231 6863 2.096013 GCTTCCTCGTGCTTTTGGATAC 59.904 50.000 0.00 0.00 0.00 2.24
5301 6933 2.048503 CCGTTGACGACCTCACCC 60.049 66.667 4.91 0.00 43.02 4.61
5303 6935 1.885163 ATCCCCGTTGACGACCTCAC 61.885 60.000 4.91 0.00 43.02 3.51
5342 6974 5.066634 CCTATCGTTCAGAGAGTACACACAT 59.933 44.000 0.00 0.00 36.50 3.21
5343 6975 4.395231 CCTATCGTTCAGAGAGTACACACA 59.605 45.833 0.00 0.00 36.50 3.72
5361 6993 7.542025 TCAGAGTACCGTAAAGAAAACCTATC 58.458 38.462 0.00 0.00 0.00 2.08
5366 6998 5.404667 CCACTCAGAGTACCGTAAAGAAAAC 59.595 44.000 1.67 0.00 0.00 2.43
5369 7001 4.147321 ACCACTCAGAGTACCGTAAAGAA 58.853 43.478 1.67 0.00 0.00 2.52
5406 7038 0.179116 CACACGAGAGCTGATGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
5421 7053 1.305219 ATGTACATGGGCGTGCACAC 61.305 55.000 18.64 7.05 34.19 3.82
5435 7067 0.460284 CGCCAGGACAGGACATGTAC 60.460 60.000 0.00 0.00 44.17 2.90
5439 7071 2.284625 TCCGCCAGGACAGGACAT 60.285 61.111 0.00 0.00 42.75 3.06
5473 7105 9.979270 GAGAACAATGTAACACATAGAGAAATG 57.021 33.333 0.00 0.00 37.97 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.