Multiple sequence alignment - TraesCS2A01G038200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G038200 chr2A 100.000 2882 0 0 1 2882 16026739 16023858 0.000000e+00 5323.0
1 TraesCS2A01G038200 chr2A 97.255 510 9 2 1 505 18057170 18056661 0.000000e+00 859.0
2 TraesCS2A01G038200 chr2A 96.680 512 12 2 1 512 19046981 19047487 0.000000e+00 846.0
3 TraesCS2A01G038200 chr2A 95.753 518 12 5 1 517 16713247 16713755 0.000000e+00 826.0
4 TraesCS2A01G038200 chr2A 95.048 525 14 3 1 514 17635173 17635696 0.000000e+00 815.0
5 TraesCS2A01G038200 chr2A 88.790 562 51 4 2272 2823 566630074 566630633 0.000000e+00 678.0
6 TraesCS2A01G038200 chr2A 87.097 248 14 6 1636 1882 16014876 16014646 6.120000e-67 265.0
7 TraesCS2A01G038200 chr2D 89.397 1377 76 34 573 1930 13839364 13838039 0.000000e+00 1670.0
8 TraesCS2A01G038200 chr2D 87.698 569 37 9 2269 2826 204488621 204489167 1.460000e-177 632.0
9 TraesCS2A01G038200 chr2D 83.614 415 36 12 1519 1928 13813388 13813001 7.590000e-96 361.0
10 TraesCS2A01G038200 chr2B 90.736 1263 48 30 644 1884 25186864 25185649 0.000000e+00 1620.0
11 TraesCS2A01G038200 chr2B 88.290 538 50 5 2298 2824 44125028 44125563 1.460000e-177 632.0
12 TraesCS2A01G038200 chr2B 85.938 128 13 3 687 813 25216935 25216812 6.480000e-27 132.0
13 TraesCS2A01G038200 chrUn 96.620 503 11 1 1 503 208400185 208400681 0.000000e+00 830.0
14 TraesCS2A01G038200 chr6A 96.421 503 12 1 1 503 36393397 36392901 0.000000e+00 824.0
15 TraesCS2A01G038200 chr6A 88.428 579 52 11 2275 2840 65858608 65859184 0.000000e+00 684.0
16 TraesCS2A01G038200 chr6A 86.396 566 64 8 2271 2825 21753210 21752647 8.830000e-170 606.0
17 TraesCS2A01G038200 chr6A 92.910 268 18 1 1957 2224 486271520 486271786 3.480000e-104 388.0
18 TraesCS2A01G038200 chr1A 94.036 503 10 6 1 503 2545827 2545345 0.000000e+00 745.0
19 TraesCS2A01G038200 chr5D 90.283 566 43 4 2271 2825 311609457 311608893 0.000000e+00 730.0
20 TraesCS2A01G038200 chr5D 87.744 563 37 8 2273 2825 545219152 545219692 1.880000e-176 628.0
21 TraesCS2A01G038200 chr1D 90.248 564 44 3 2273 2826 223774479 223773917 0.000000e+00 726.0
22 TraesCS2A01G038200 chr1B 89.624 559 47 3 2278 2826 323328822 323328265 0.000000e+00 701.0
23 TraesCS2A01G038200 chr1B 92.025 163 8 3 350 507 525809386 525809548 1.040000e-54 224.0
24 TraesCS2A01G038200 chr4D 89.464 560 47 7 2276 2825 21515974 21515417 0.000000e+00 697.0
25 TraesCS2A01G038200 chr6D 88.235 578 55 9 2275 2840 48675329 48674753 0.000000e+00 678.0
26 TraesCS2A01G038200 chr6D 88.683 539 46 7 2301 2828 91397250 91396716 0.000000e+00 643.0
27 TraesCS2A01G038200 chr6D 92.884 267 18 1 1957 2223 457000715 457000980 1.250000e-103 387.0
28 TraesCS2A01G038200 chr7A 87.365 554 52 5 2267 2810 339759200 339759745 1.130000e-173 619.0
29 TraesCS2A01G038200 chr7A 98.034 356 7 0 1 356 683647557 683647202 1.130000e-173 619.0
30 TraesCS2A01G038200 chr7A 92.086 278 18 4 1954 2229 706650937 706650662 3.480000e-104 388.0
31 TraesCS2A01G038200 chr5B 98.034 356 7 0 1 356 442370433 442370788 1.130000e-173 619.0
32 TraesCS2A01G038200 chr5A 86.348 564 64 8 2273 2825 260022296 260022857 1.140000e-168 603.0
33 TraesCS2A01G038200 chr5A 92.674 273 18 2 1957 2229 10553511 10553781 2.690000e-105 392.0
34 TraesCS2A01G038200 chr5A 90.964 166 11 3 347 508 470165655 470165820 1.340000e-53 220.0
35 TraesCS2A01G038200 chr7B 93.916 263 15 1 1957 2219 690910103 690909842 2.080000e-106 396.0
36 TraesCS2A01G038200 chr7B 89.888 178 13 4 347 519 115679638 115679461 1.040000e-54 224.0
37 TraesCS2A01G038200 chr3B 92.989 271 16 2 1957 2225 734588303 734588572 2.690000e-105 392.0
38 TraesCS2A01G038200 chr3B 92.364 275 19 2 1956 2230 49226434 49226706 9.680000e-105 390.0
39 TraesCS2A01G038200 chr3B 97.436 39 1 0 571 609 183464493 183464455 1.850000e-07 67.6
40 TraesCS2A01G038200 chr4A 93.208 265 17 1 1957 2221 4195251 4194988 3.480000e-104 388.0
41 TraesCS2A01G038200 chr4A 90.036 281 17 3 2272 2542 121172949 121173228 1.270000e-93 353.0
42 TraesCS2A01G038200 chr6B 91.459 281 19 4 1956 2236 706113846 706114121 5.830000e-102 381.0
43 TraesCS2A01G038200 chr3A 94.231 208 5 2 300 507 708564470 708564670 7.750000e-81 311.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G038200 chr2A 16023858 16026739 2881 True 5323 5323 100.000 1 2882 1 chr2A.!!$R2 2881
1 TraesCS2A01G038200 chr2A 18056661 18057170 509 True 859 859 97.255 1 505 1 chr2A.!!$R3 504
2 TraesCS2A01G038200 chr2A 19046981 19047487 506 False 846 846 96.680 1 512 1 chr2A.!!$F3 511
3 TraesCS2A01G038200 chr2A 16713247 16713755 508 False 826 826 95.753 1 517 1 chr2A.!!$F1 516
4 TraesCS2A01G038200 chr2A 17635173 17635696 523 False 815 815 95.048 1 514 1 chr2A.!!$F2 513
5 TraesCS2A01G038200 chr2A 566630074 566630633 559 False 678 678 88.790 2272 2823 1 chr2A.!!$F4 551
6 TraesCS2A01G038200 chr2D 13838039 13839364 1325 True 1670 1670 89.397 573 1930 1 chr2D.!!$R2 1357
7 TraesCS2A01G038200 chr2D 204488621 204489167 546 False 632 632 87.698 2269 2826 1 chr2D.!!$F1 557
8 TraesCS2A01G038200 chr2B 25185649 25186864 1215 True 1620 1620 90.736 644 1884 1 chr2B.!!$R1 1240
9 TraesCS2A01G038200 chr2B 44125028 44125563 535 False 632 632 88.290 2298 2824 1 chr2B.!!$F1 526
10 TraesCS2A01G038200 chr6A 65858608 65859184 576 False 684 684 88.428 2275 2840 1 chr6A.!!$F1 565
11 TraesCS2A01G038200 chr6A 21752647 21753210 563 True 606 606 86.396 2271 2825 1 chr6A.!!$R1 554
12 TraesCS2A01G038200 chr5D 311608893 311609457 564 True 730 730 90.283 2271 2825 1 chr5D.!!$R1 554
13 TraesCS2A01G038200 chr5D 545219152 545219692 540 False 628 628 87.744 2273 2825 1 chr5D.!!$F1 552
14 TraesCS2A01G038200 chr1D 223773917 223774479 562 True 726 726 90.248 2273 2826 1 chr1D.!!$R1 553
15 TraesCS2A01G038200 chr1B 323328265 323328822 557 True 701 701 89.624 2278 2826 1 chr1B.!!$R1 548
16 TraesCS2A01G038200 chr4D 21515417 21515974 557 True 697 697 89.464 2276 2825 1 chr4D.!!$R1 549
17 TraesCS2A01G038200 chr6D 48674753 48675329 576 True 678 678 88.235 2275 2840 1 chr6D.!!$R1 565
18 TraesCS2A01G038200 chr6D 91396716 91397250 534 True 643 643 88.683 2301 2828 1 chr6D.!!$R2 527
19 TraesCS2A01G038200 chr7A 339759200 339759745 545 False 619 619 87.365 2267 2810 1 chr7A.!!$F1 543
20 TraesCS2A01G038200 chr5A 260022296 260022857 561 False 603 603 86.348 2273 2825 1 chr5A.!!$F2 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 546 0.253044 TGTAAGATCTGGCAGCACCC 59.747 55.0 10.34 0.0 37.83 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 1985 0.193574 AACTTCCAGACCTCTCCCCA 59.806 55.0 0.0 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
216 218 6.892456 AGATTATACAAGATGCTCCCGATCTA 59.108 38.462 0.00 0.00 29.67 1.98
231 233 7.201696 GCTCCCGATCTATTTTGTCAAATTACA 60.202 37.037 0.00 0.00 34.29 2.41
393 395 1.547755 TGAGGGAGAGGGAGGGAGT 60.548 63.158 0.00 0.00 0.00 3.85
507 527 1.604693 CGGGCGTTCTTCTAGTGTTGT 60.605 52.381 0.00 0.00 0.00 3.32
508 528 1.798813 GGGCGTTCTTCTAGTGTTGTG 59.201 52.381 0.00 0.00 0.00 3.33
509 529 2.480845 GGCGTTCTTCTAGTGTTGTGT 58.519 47.619 0.00 0.00 0.00 3.72
511 531 4.053295 GGCGTTCTTCTAGTGTTGTGTAA 58.947 43.478 0.00 0.00 0.00 2.41
512 532 4.150098 GGCGTTCTTCTAGTGTTGTGTAAG 59.850 45.833 0.00 0.00 0.00 2.34
513 533 4.980434 GCGTTCTTCTAGTGTTGTGTAAGA 59.020 41.667 0.00 0.00 0.00 2.10
514 534 5.634020 GCGTTCTTCTAGTGTTGTGTAAGAT 59.366 40.000 0.00 0.00 0.00 2.40
515 535 6.183359 GCGTTCTTCTAGTGTTGTGTAAGATC 60.183 42.308 0.00 0.00 0.00 2.75
516 536 7.085116 CGTTCTTCTAGTGTTGTGTAAGATCT 58.915 38.462 0.00 0.00 0.00 2.75
517 537 7.061210 CGTTCTTCTAGTGTTGTGTAAGATCTG 59.939 40.741 0.00 0.00 0.00 2.90
518 538 6.925211 TCTTCTAGTGTTGTGTAAGATCTGG 58.075 40.000 0.00 0.00 0.00 3.86
519 539 5.073311 TCTAGTGTTGTGTAAGATCTGGC 57.927 43.478 0.00 0.00 0.00 4.85
520 540 3.769739 AGTGTTGTGTAAGATCTGGCA 57.230 42.857 0.00 0.00 0.00 4.92
521 541 3.668447 AGTGTTGTGTAAGATCTGGCAG 58.332 45.455 8.58 8.58 0.00 4.85
522 542 2.160417 GTGTTGTGTAAGATCTGGCAGC 59.840 50.000 10.34 0.00 0.00 5.25
523 543 2.224499 TGTTGTGTAAGATCTGGCAGCA 60.224 45.455 10.34 0.00 0.00 4.41
524 544 2.099141 TGTGTAAGATCTGGCAGCAC 57.901 50.000 10.34 11.40 0.00 4.40
525 545 1.339055 TGTGTAAGATCTGGCAGCACC 60.339 52.381 10.34 0.91 39.84 5.01
526 546 0.253044 TGTAAGATCTGGCAGCACCC 59.747 55.000 10.34 0.00 37.83 4.61
527 547 0.811616 GTAAGATCTGGCAGCACCCG 60.812 60.000 10.34 0.00 37.83 5.28
528 548 0.975556 TAAGATCTGGCAGCACCCGA 60.976 55.000 10.34 0.00 37.83 5.14
529 549 1.630126 AAGATCTGGCAGCACCCGAT 61.630 55.000 10.34 2.90 44.43 4.18
530 550 2.507944 ATCTGGCAGCACCCGATC 59.492 61.111 10.34 0.00 37.86 3.69
531 551 3.451556 ATCTGGCAGCACCCGATCG 62.452 63.158 10.34 8.51 37.86 3.69
535 555 3.567797 GCAGCACCCGATCGCTTC 61.568 66.667 10.32 0.00 35.96 3.86
536 556 2.892425 CAGCACCCGATCGCTTCC 60.892 66.667 10.32 0.00 35.96 3.46
537 557 3.077556 AGCACCCGATCGCTTCCT 61.078 61.111 10.32 0.00 33.81 3.36
538 558 2.892425 GCACCCGATCGCTTCCTG 60.892 66.667 10.32 0.67 0.00 3.86
539 559 2.202932 CACCCGATCGCTTCCTGG 60.203 66.667 10.32 6.95 0.00 4.45
540 560 2.363795 ACCCGATCGCTTCCTGGA 60.364 61.111 10.32 0.00 0.00 3.86
541 561 2.419198 CCCGATCGCTTCCTGGAG 59.581 66.667 10.32 0.00 0.00 3.86
542 562 2.127869 CCCGATCGCTTCCTGGAGA 61.128 63.158 10.32 0.00 0.00 3.71
543 563 1.066587 CCGATCGCTTCCTGGAGAC 59.933 63.158 10.32 0.00 0.00 3.36
544 564 1.066587 CGATCGCTTCCTGGAGACC 59.933 63.158 0.26 0.00 0.00 3.85
545 565 1.667154 CGATCGCTTCCTGGAGACCA 61.667 60.000 0.26 0.00 0.00 4.02
546 566 0.755686 GATCGCTTCCTGGAGACCAT 59.244 55.000 0.00 0.00 30.82 3.55
547 567 0.467384 ATCGCTTCCTGGAGACCATG 59.533 55.000 0.00 0.00 30.82 3.66
548 568 1.153289 CGCTTCCTGGAGACCATGG 60.153 63.158 11.19 11.19 30.82 3.66
549 569 1.617018 CGCTTCCTGGAGACCATGGA 61.617 60.000 21.47 0.00 32.08 3.41
550 570 0.842635 GCTTCCTGGAGACCATGGAT 59.157 55.000 21.47 6.30 33.33 3.41
551 571 1.213926 GCTTCCTGGAGACCATGGATT 59.786 52.381 21.47 5.48 33.33 3.01
552 572 2.928334 CTTCCTGGAGACCATGGATTG 58.072 52.381 21.47 1.99 33.33 2.67
553 573 2.268796 TCCTGGAGACCATGGATTGA 57.731 50.000 21.47 1.81 30.82 2.57
554 574 2.561187 TCCTGGAGACCATGGATTGAA 58.439 47.619 21.47 0.00 30.82 2.69
555 575 2.239654 TCCTGGAGACCATGGATTGAAC 59.760 50.000 21.47 3.88 30.82 3.18
556 576 2.648059 CTGGAGACCATGGATTGAACC 58.352 52.381 21.47 12.60 30.82 3.62
557 577 1.284785 TGGAGACCATGGATTGAACCC 59.715 52.381 21.47 9.60 0.00 4.11
558 578 1.566231 GGAGACCATGGATTGAACCCT 59.434 52.381 21.47 1.80 0.00 4.34
559 579 2.648059 GAGACCATGGATTGAACCCTG 58.352 52.381 21.47 0.00 0.00 4.45
560 580 1.285962 AGACCATGGATTGAACCCTGG 59.714 52.381 21.47 0.00 46.38 4.45
562 582 2.236489 CCATGGATTGAACCCTGGTT 57.764 50.000 5.56 0.07 39.67 3.67
583 603 1.488393 CTCCCATTTCCCTCTCACCTC 59.512 57.143 0.00 0.00 0.00 3.85
592 612 1.550976 CCCTCTCACCTCGCTTAAAGT 59.449 52.381 0.00 0.00 0.00 2.66
610 630 3.003478 GACAAATAGTCGCCGCGG 58.997 61.111 24.05 24.05 37.53 6.46
639 659 2.729479 CGCCCACCTGAGCAGATCT 61.729 63.158 0.00 0.00 0.00 2.75
640 660 1.153208 GCCCACCTGAGCAGATCTG 60.153 63.158 18.84 18.84 0.00 2.90
650 670 1.880340 GCAGATCTGACGAAGCCCG 60.880 63.158 27.04 0.00 45.44 6.13
728 748 3.419793 CTGGAGCCCAGTTCAAACA 57.580 52.632 11.85 0.00 45.82 2.83
813 833 3.492309 GCATGTCCATCGATCTGAACTCT 60.492 47.826 0.00 0.00 0.00 3.24
815 835 3.356290 TGTCCATCGATCTGAACTCTGA 58.644 45.455 0.00 0.00 0.00 3.27
816 836 3.763897 TGTCCATCGATCTGAACTCTGAA 59.236 43.478 0.00 0.00 0.00 3.02
817 837 4.109050 GTCCATCGATCTGAACTCTGAAC 58.891 47.826 0.00 0.00 0.00 3.18
818 838 4.019858 TCCATCGATCTGAACTCTGAACT 58.980 43.478 0.00 0.00 0.00 3.01
819 839 4.097135 TCCATCGATCTGAACTCTGAACTC 59.903 45.833 0.00 0.00 0.00 3.01
820 840 4.142293 CCATCGATCTGAACTCTGAACTCA 60.142 45.833 0.00 0.00 0.00 3.41
821 841 4.427096 TCGATCTGAACTCTGAACTCAC 57.573 45.455 0.00 0.00 0.00 3.51
822 842 3.191581 TCGATCTGAACTCTGAACTCACC 59.808 47.826 0.00 0.00 0.00 4.02
823 843 3.192422 CGATCTGAACTCTGAACTCACCT 59.808 47.826 0.00 0.00 0.00 4.00
824 844 4.493547 GATCTGAACTCTGAACTCACCTG 58.506 47.826 0.00 0.00 0.00 4.00
825 845 3.566351 TCTGAACTCTGAACTCACCTGA 58.434 45.455 0.00 0.00 0.00 3.86
826 846 3.319405 TCTGAACTCTGAACTCACCTGAC 59.681 47.826 0.00 0.00 0.00 3.51
827 847 2.365617 TGAACTCTGAACTCACCTGACC 59.634 50.000 0.00 0.00 0.00 4.02
828 848 0.962489 ACTCTGAACTCACCTGACCG 59.038 55.000 0.00 0.00 0.00 4.79
829 849 1.248486 CTCTGAACTCACCTGACCGA 58.752 55.000 0.00 0.00 0.00 4.69
832 852 0.757561 TGAACTCACCTGACCGACCA 60.758 55.000 0.00 0.00 0.00 4.02
908 934 0.852155 TCCTGCCATGCCATTCCATA 59.148 50.000 0.00 0.00 0.00 2.74
941 967 4.796495 CACCCAAGCTACCCGCCC 62.796 72.222 0.00 0.00 40.39 6.13
957 983 2.445654 CCCCCTCCTCCTCTGCTC 60.446 72.222 0.00 0.00 0.00 4.26
959 985 2.695597 CCCTCCTCCTCTGCTCCT 59.304 66.667 0.00 0.00 0.00 3.69
976 1002 5.836705 TGCTCCTCTCCTCTGCTATATATT 58.163 41.667 0.00 0.00 0.00 1.28
978 1004 5.890985 GCTCCTCTCCTCTGCTATATATTCA 59.109 44.000 0.00 0.00 0.00 2.57
979 1005 6.550854 GCTCCTCTCCTCTGCTATATATTCAT 59.449 42.308 0.00 0.00 0.00 2.57
981 1007 6.770303 TCCTCTCCTCTGCTATATATTCATCG 59.230 42.308 0.00 0.00 0.00 3.84
983 1009 5.888161 TCTCCTCTGCTATATATTCATCGCA 59.112 40.000 0.00 0.00 0.00 5.10
1018 1044 1.067762 TCCCACCCATCCATCCATCC 61.068 60.000 0.00 0.00 0.00 3.51
1019 1045 1.362744 CCCACCCATCCATCCATCCA 61.363 60.000 0.00 0.00 0.00 3.41
1020 1046 0.781920 CCACCCATCCATCCATCCAT 59.218 55.000 0.00 0.00 0.00 3.41
1021 1047 1.272313 CCACCCATCCATCCATCCATC 60.272 57.143 0.00 0.00 0.00 3.51
1114 1143 0.037975 GCCATGGCTTCCAACAACAG 60.038 55.000 29.98 0.00 36.95 3.16
1600 1639 0.744874 GGAGATGCTGCGTACTACCA 59.255 55.000 0.00 0.00 0.00 3.25
1699 1745 7.544217 TGCATTTATATGTATACGTGCTAGTGG 59.456 37.037 7.89 0.00 33.45 4.00
1700 1746 7.010183 GCATTTATATGTATACGTGCTAGTGGG 59.990 40.741 7.89 0.00 34.12 4.61
1703 1749 2.449464 TGTATACGTGCTAGTGGGTGT 58.551 47.619 0.00 0.00 0.00 4.16
1704 1750 2.424601 TGTATACGTGCTAGTGGGTGTC 59.575 50.000 0.00 0.00 0.00 3.67
1705 1751 1.848652 ATACGTGCTAGTGGGTGTCT 58.151 50.000 0.00 0.00 0.00 3.41
1706 1752 0.885879 TACGTGCTAGTGGGTGTCTG 59.114 55.000 0.00 0.00 0.00 3.51
1707 1753 0.826256 ACGTGCTAGTGGGTGTCTGA 60.826 55.000 0.00 0.00 0.00 3.27
1816 1867 4.382457 CGTGTAATGTGTTTGAAGCCAATG 59.618 41.667 0.00 0.00 31.46 2.82
1832 1883 3.411446 CCAATGTGTTTCAGGCTCACTA 58.589 45.455 5.76 0.00 33.82 2.74
1835 1886 5.047802 CCAATGTGTTTCAGGCTCACTATTT 60.048 40.000 5.76 0.00 33.82 1.40
1836 1887 5.886960 ATGTGTTTCAGGCTCACTATTTC 57.113 39.130 5.76 0.00 33.82 2.17
1837 1888 4.072131 TGTGTTTCAGGCTCACTATTTCC 58.928 43.478 5.76 0.00 33.82 3.13
1838 1889 3.440522 GTGTTTCAGGCTCACTATTTCCC 59.559 47.826 0.00 0.00 0.00 3.97
1839 1890 3.017442 GTTTCAGGCTCACTATTTCCCC 58.983 50.000 0.00 0.00 0.00 4.81
1840 1891 0.830648 TCAGGCTCACTATTTCCCCG 59.169 55.000 0.00 0.00 0.00 5.73
1841 1892 0.541863 CAGGCTCACTATTTCCCCGT 59.458 55.000 0.00 0.00 0.00 5.28
1842 1893 1.760613 CAGGCTCACTATTTCCCCGTA 59.239 52.381 0.00 0.00 0.00 4.02
1843 1894 2.169769 CAGGCTCACTATTTCCCCGTAA 59.830 50.000 0.00 0.00 0.00 3.18
1847 1898 6.021030 AGGCTCACTATTTCCCCGTAATATA 58.979 40.000 0.00 0.00 0.00 0.86
1863 1915 7.307694 CCGTAATATATAACTGCTACGACCAA 58.692 38.462 11.97 0.00 35.36 3.67
1875 1927 7.101054 ACTGCTACGACCAATAATTTAACAGA 58.899 34.615 0.00 0.00 0.00 3.41
1877 1929 8.500753 TGCTACGACCAATAATTTAACAGAAT 57.499 30.769 0.00 0.00 0.00 2.40
1878 1930 8.394877 TGCTACGACCAATAATTTAACAGAATG 58.605 33.333 0.00 0.00 46.00 2.67
1879 1931 7.376072 GCTACGACCAATAATTTAACAGAATGC 59.624 37.037 0.00 0.00 42.53 3.56
1880 1932 7.391148 ACGACCAATAATTTAACAGAATGCT 57.609 32.000 0.00 0.00 42.53 3.79
1881 1933 8.500753 ACGACCAATAATTTAACAGAATGCTA 57.499 30.769 0.00 0.00 42.53 3.49
1882 1934 8.395633 ACGACCAATAATTTAACAGAATGCTAC 58.604 33.333 0.00 0.00 42.53 3.58
1883 1935 7.582679 CGACCAATAATTTAACAGAATGCTACG 59.417 37.037 0.00 0.00 42.53 3.51
1884 1936 8.500753 ACCAATAATTTAACAGAATGCTACGA 57.499 30.769 0.00 0.00 42.53 3.43
1889 1941 9.811995 ATAATTTAACAGAATGCTACGACTACA 57.188 29.630 0.00 0.00 42.53 2.74
1896 1948 5.621634 CAGAATGCTACGACTACAGATTACG 59.378 44.000 0.00 0.00 0.00 3.18
1898 1950 3.534554 TGCTACGACTACAGATTACGGA 58.465 45.455 0.00 0.00 0.00 4.69
1900 1952 4.577693 TGCTACGACTACAGATTACGGATT 59.422 41.667 0.00 0.00 0.00 3.01
1907 1959 7.861372 ACGACTACAGATTACGGATTATTCTTG 59.139 37.037 0.00 0.00 0.00 3.02
1908 1960 7.326305 CGACTACAGATTACGGATTATTCTTGG 59.674 40.741 0.00 0.00 0.00 3.61
1909 1961 8.246430 ACTACAGATTACGGATTATTCTTGGA 57.754 34.615 0.00 0.00 0.00 3.53
1910 1962 8.871125 ACTACAGATTACGGATTATTCTTGGAT 58.129 33.333 0.00 0.00 0.00 3.41
1930 1984 8.506168 TTGGATTTAGTTTTATAGGCTGACAG 57.494 34.615 0.00 0.00 0.00 3.51
1931 1985 7.630082 TGGATTTAGTTTTATAGGCTGACAGT 58.370 34.615 3.99 0.00 0.00 3.55
1932 1986 7.552687 TGGATTTAGTTTTATAGGCTGACAGTG 59.447 37.037 3.99 0.00 0.00 3.66
1933 1987 7.012421 GGATTTAGTTTTATAGGCTGACAGTGG 59.988 40.741 3.99 0.00 0.00 4.00
1934 1988 4.222124 AGTTTTATAGGCTGACAGTGGG 57.778 45.455 3.99 0.00 0.00 4.61
1935 1989 3.054361 AGTTTTATAGGCTGACAGTGGGG 60.054 47.826 3.99 0.00 0.00 4.96
1936 1990 2.561209 TTATAGGCTGACAGTGGGGA 57.439 50.000 3.99 0.00 0.00 4.81
1937 1991 2.088104 TATAGGCTGACAGTGGGGAG 57.912 55.000 3.99 0.00 0.00 4.30
1938 1992 0.339859 ATAGGCTGACAGTGGGGAGA 59.660 55.000 3.99 0.00 0.00 3.71
1939 1993 0.324738 TAGGCTGACAGTGGGGAGAG 60.325 60.000 3.99 0.00 0.00 3.20
1940 1994 2.664081 GGCTGACAGTGGGGAGAGG 61.664 68.421 3.99 0.00 0.00 3.69
1941 1995 1.915769 GCTGACAGTGGGGAGAGGT 60.916 63.158 3.99 0.00 0.00 3.85
1942 1996 1.893919 GCTGACAGTGGGGAGAGGTC 61.894 65.000 3.99 0.00 0.00 3.85
1943 1997 0.252012 CTGACAGTGGGGAGAGGTCT 60.252 60.000 0.00 0.00 0.00 3.85
1944 1998 0.542938 TGACAGTGGGGAGAGGTCTG 60.543 60.000 0.00 0.00 0.00 3.51
1945 1999 1.229336 ACAGTGGGGAGAGGTCTGG 60.229 63.158 0.00 0.00 0.00 3.86
1946 2000 1.079256 CAGTGGGGAGAGGTCTGGA 59.921 63.158 0.00 0.00 0.00 3.86
1947 2001 0.545309 CAGTGGGGAGAGGTCTGGAA 60.545 60.000 0.00 0.00 0.00 3.53
1948 2002 0.252467 AGTGGGGAGAGGTCTGGAAG 60.252 60.000 0.00 0.00 0.00 3.46
1949 2003 0.545548 GTGGGGAGAGGTCTGGAAGT 60.546 60.000 0.00 0.00 33.76 3.01
1950 2004 0.193574 TGGGGAGAGGTCTGGAAGTT 59.806 55.000 0.00 0.00 33.76 2.66
1951 2005 1.363246 GGGGAGAGGTCTGGAAGTTT 58.637 55.000 0.00 0.00 33.76 2.66
1952 2006 1.705745 GGGGAGAGGTCTGGAAGTTTT 59.294 52.381 0.00 0.00 33.76 2.43
1953 2007 2.910977 GGGGAGAGGTCTGGAAGTTTTA 59.089 50.000 0.00 0.00 33.76 1.52
1954 2008 3.523972 GGGGAGAGGTCTGGAAGTTTTAT 59.476 47.826 0.00 0.00 33.76 1.40
1955 2009 4.384318 GGGGAGAGGTCTGGAAGTTTTATC 60.384 50.000 0.00 0.00 33.76 1.75
1956 2010 4.471747 GGGAGAGGTCTGGAAGTTTTATCT 59.528 45.833 0.00 0.00 33.76 1.98
1957 2011 5.661759 GGGAGAGGTCTGGAAGTTTTATCTA 59.338 44.000 0.00 0.00 33.76 1.98
1958 2012 6.407187 GGGAGAGGTCTGGAAGTTTTATCTAC 60.407 46.154 0.00 0.00 33.76 2.59
1959 2013 6.381707 GGAGAGGTCTGGAAGTTTTATCTACT 59.618 42.308 0.00 0.00 33.76 2.57
1960 2014 7.412853 AGAGGTCTGGAAGTTTTATCTACTC 57.587 40.000 0.00 0.00 33.76 2.59
1961 2015 6.381707 AGAGGTCTGGAAGTTTTATCTACTCC 59.618 42.308 0.00 0.00 33.76 3.85
1962 2016 5.425862 AGGTCTGGAAGTTTTATCTACTCCC 59.574 44.000 0.00 0.00 33.76 4.30
1963 2017 5.425862 GGTCTGGAAGTTTTATCTACTCCCT 59.574 44.000 0.00 0.00 33.76 4.20
1964 2018 6.407187 GGTCTGGAAGTTTTATCTACTCCCTC 60.407 46.154 0.00 0.00 33.76 4.30
1965 2019 5.661759 TCTGGAAGTTTTATCTACTCCCTCC 59.338 44.000 0.00 0.00 33.76 4.30
1966 2020 4.404715 TGGAAGTTTTATCTACTCCCTCCG 59.595 45.833 0.00 0.00 0.00 4.63
1967 2021 4.405036 GGAAGTTTTATCTACTCCCTCCGT 59.595 45.833 0.00 0.00 0.00 4.69
1968 2022 5.105023 GGAAGTTTTATCTACTCCCTCCGTT 60.105 44.000 0.00 0.00 0.00 4.44
1969 2023 6.370186 AAGTTTTATCTACTCCCTCCGTTT 57.630 37.500 0.00 0.00 0.00 3.60
1970 2024 5.975282 AGTTTTATCTACTCCCTCCGTTTC 58.025 41.667 0.00 0.00 0.00 2.78
1971 2025 5.482878 AGTTTTATCTACTCCCTCCGTTTCA 59.517 40.000 0.00 0.00 0.00 2.69
1972 2026 4.996788 TTATCTACTCCCTCCGTTTCAC 57.003 45.455 0.00 0.00 0.00 3.18
1973 2027 2.297698 TCTACTCCCTCCGTTTCACA 57.702 50.000 0.00 0.00 0.00 3.58
1974 2028 2.600790 TCTACTCCCTCCGTTTCACAA 58.399 47.619 0.00 0.00 0.00 3.33
1975 2029 3.170717 TCTACTCCCTCCGTTTCACAAT 58.829 45.455 0.00 0.00 0.00 2.71
1976 2030 2.185004 ACTCCCTCCGTTTCACAATG 57.815 50.000 0.00 0.00 0.00 2.82
1977 2031 1.420138 ACTCCCTCCGTTTCACAATGT 59.580 47.619 0.00 0.00 0.00 2.71
1978 2032 2.635915 ACTCCCTCCGTTTCACAATGTA 59.364 45.455 0.00 0.00 0.00 2.29
1979 2033 3.262420 CTCCCTCCGTTTCACAATGTAG 58.738 50.000 0.00 0.00 0.00 2.74
1980 2034 1.737793 CCCTCCGTTTCACAATGTAGC 59.262 52.381 0.00 0.00 0.00 3.58
1981 2035 1.393539 CCTCCGTTTCACAATGTAGCG 59.606 52.381 0.00 0.00 0.00 4.26
1982 2036 0.793861 TCCGTTTCACAATGTAGCGC 59.206 50.000 0.00 0.00 0.00 5.92
1983 2037 0.515127 CCGTTTCACAATGTAGCGCA 59.485 50.000 11.47 0.00 0.00 6.09
1984 2038 1.130373 CCGTTTCACAATGTAGCGCAT 59.870 47.619 11.47 0.00 40.03 4.73
1985 2039 2.350192 CCGTTTCACAATGTAGCGCATA 59.650 45.455 11.47 0.00 36.67 3.14
1986 2040 3.002246 CCGTTTCACAATGTAGCGCATAT 59.998 43.478 11.47 0.00 36.67 1.78
1987 2041 4.210328 CCGTTTCACAATGTAGCGCATATA 59.790 41.667 11.47 0.00 36.67 0.86
1988 2042 5.365942 CGTTTCACAATGTAGCGCATATAG 58.634 41.667 11.47 0.00 36.67 1.31
1989 2043 5.174943 CGTTTCACAATGTAGCGCATATAGA 59.825 40.000 11.47 0.00 36.67 1.98
1990 2044 6.128822 CGTTTCACAATGTAGCGCATATAGAT 60.129 38.462 11.47 0.00 36.67 1.98
1991 2045 7.569408 CGTTTCACAATGTAGCGCATATAGATT 60.569 37.037 11.47 0.41 36.67 2.40
1992 2046 7.728847 TTCACAATGTAGCGCATATAGATTT 57.271 32.000 11.47 0.00 36.67 2.17
1993 2047 7.728847 TCACAATGTAGCGCATATAGATTTT 57.271 32.000 11.47 0.00 36.67 1.82
1994 2048 8.153479 TCACAATGTAGCGCATATAGATTTTT 57.847 30.769 11.47 0.00 36.67 1.94
2039 2093 6.870971 ACTTTGACCAAGTTTATAGCGAAA 57.129 33.333 0.00 0.00 43.89 3.46
2040 2094 7.266922 ACTTTGACCAAGTTTATAGCGAAAA 57.733 32.000 0.00 0.00 43.89 2.29
2041 2095 7.882179 ACTTTGACCAAGTTTATAGCGAAAAT 58.118 30.769 0.00 0.00 43.89 1.82
2042 2096 8.021396 ACTTTGACCAAGTTTATAGCGAAAATC 58.979 33.333 0.00 0.00 43.89 2.17
2043 2097 7.441890 TTGACCAAGTTTATAGCGAAAATCA 57.558 32.000 0.00 0.00 0.00 2.57
2044 2098 7.624360 TGACCAAGTTTATAGCGAAAATCAT 57.376 32.000 0.00 0.00 0.00 2.45
2045 2099 8.725405 TGACCAAGTTTATAGCGAAAATCATA 57.275 30.769 0.00 0.00 0.00 2.15
2046 2100 9.337396 TGACCAAGTTTATAGCGAAAATCATAT 57.663 29.630 0.00 0.00 0.00 1.78
2060 2114 9.291664 GCGAAAATCATATACATCTAGAGTACC 57.708 37.037 0.00 0.00 0.00 3.34
2073 2127 9.094578 ACATCTAGAGTACCAAATACATATGCT 57.905 33.333 1.58 0.00 36.09 3.79
2074 2128 9.935241 CATCTAGAGTACCAAATACATATGCTT 57.065 33.333 1.58 0.00 36.09 3.91
2090 2144 8.824159 ACATATGCTTAGATACATCACAAGAC 57.176 34.615 1.58 2.02 0.00 3.01
2091 2145 8.424133 ACATATGCTTAGATACATCACAAGACA 58.576 33.333 1.58 5.90 0.00 3.41
2092 2146 9.433153 CATATGCTTAGATACATCACAAGACAT 57.567 33.333 0.00 10.40 31.52 3.06
2094 2148 8.824159 ATGCTTAGATACATCACAAGACATAC 57.176 34.615 7.43 0.00 0.00 2.39
2095 2149 8.011844 TGCTTAGATACATCACAAGACATACT 57.988 34.615 7.43 0.00 0.00 2.12
2096 2150 8.478066 TGCTTAGATACATCACAAGACATACTT 58.522 33.333 7.43 0.00 39.70 2.24
2097 2151 9.319143 GCTTAGATACATCACAAGACATACTTT 57.681 33.333 7.43 0.00 36.61 2.66
2101 2155 9.539825 AGATACATCACAAGACATACTTTCATC 57.460 33.333 0.00 0.00 36.61 2.92
2102 2156 9.539825 GATACATCACAAGACATACTTTCATCT 57.460 33.333 0.00 0.00 36.61 2.90
2103 2157 9.896645 ATACATCACAAGACATACTTTCATCTT 57.103 29.630 0.00 0.00 36.61 2.40
2105 2159 9.896645 ACATCACAAGACATACTTTCATCTTAT 57.103 29.630 0.00 0.00 36.61 1.73
2154 2208 8.974060 AATAGTTTTCTCTGTAAACTTGGTCA 57.026 30.769 6.33 0.00 41.69 4.02
2155 2209 8.974060 ATAGTTTTCTCTGTAAACTTGGTCAA 57.026 30.769 6.33 0.00 41.69 3.18
2156 2210 7.696992 AGTTTTCTCTGTAAACTTGGTCAAA 57.303 32.000 0.00 0.00 41.69 2.69
2157 2211 7.762382 AGTTTTCTCTGTAAACTTGGTCAAAG 58.238 34.615 0.00 0.00 41.69 2.77
2209 2263 8.757164 TCTATATGCACTACATTATGAAACGG 57.243 34.615 0.00 0.00 40.38 4.44
2210 2264 8.581578 TCTATATGCACTACATTATGAAACGGA 58.418 33.333 0.00 0.00 40.38 4.69
2211 2265 5.991328 ATGCACTACATTATGAAACGGAG 57.009 39.130 0.00 0.00 34.40 4.63
2212 2266 4.188462 TGCACTACATTATGAAACGGAGG 58.812 43.478 0.00 0.00 0.00 4.30
2213 2267 3.560068 GCACTACATTATGAAACGGAGGG 59.440 47.826 0.00 0.00 0.00 4.30
2214 2268 4.682320 GCACTACATTATGAAACGGAGGGA 60.682 45.833 0.00 0.00 0.00 4.20
2215 2269 5.050490 CACTACATTATGAAACGGAGGGAG 58.950 45.833 0.00 0.00 0.00 4.30
2216 2270 4.715297 ACTACATTATGAAACGGAGGGAGT 59.285 41.667 0.00 0.00 0.00 3.85
2217 2271 5.895534 ACTACATTATGAAACGGAGGGAGTA 59.104 40.000 0.00 0.00 0.00 2.59
2218 2272 5.888982 ACATTATGAAACGGAGGGAGTAT 57.111 39.130 0.00 0.00 0.00 2.12
2219 2273 5.855045 ACATTATGAAACGGAGGGAGTATC 58.145 41.667 0.00 0.00 0.00 2.24
2220 2274 5.365605 ACATTATGAAACGGAGGGAGTATCA 59.634 40.000 0.00 0.00 36.25 2.15
2221 2275 5.943349 TTATGAAACGGAGGGAGTATCAA 57.057 39.130 0.00 0.00 36.25 2.57
2222 2276 4.837093 ATGAAACGGAGGGAGTATCAAA 57.163 40.909 0.00 0.00 36.25 2.69
2223 2277 4.837093 TGAAACGGAGGGAGTATCAAAT 57.163 40.909 0.00 0.00 36.25 2.32
2224 2278 5.174037 TGAAACGGAGGGAGTATCAAATT 57.826 39.130 0.00 0.00 36.25 1.82
2225 2279 5.183228 TGAAACGGAGGGAGTATCAAATTC 58.817 41.667 0.00 0.00 36.25 2.17
2226 2280 4.837093 AACGGAGGGAGTATCAAATTCA 57.163 40.909 0.00 0.00 36.25 2.57
2227 2281 5.373812 AACGGAGGGAGTATCAAATTCAT 57.626 39.130 0.00 0.00 36.25 2.57
2228 2282 6.494666 AACGGAGGGAGTATCAAATTCATA 57.505 37.500 0.00 0.00 36.25 2.15
2229 2283 6.688073 ACGGAGGGAGTATCAAATTCATAT 57.312 37.500 0.00 0.00 36.25 1.78
2230 2284 7.792364 ACGGAGGGAGTATCAAATTCATATA 57.208 36.000 0.00 0.00 36.25 0.86
2231 2285 7.841956 ACGGAGGGAGTATCAAATTCATATAG 58.158 38.462 0.00 0.00 36.25 1.31
2232 2286 7.674348 ACGGAGGGAGTATCAAATTCATATAGA 59.326 37.037 0.00 0.00 36.25 1.98
2233 2287 8.531982 CGGAGGGAGTATCAAATTCATATAGAA 58.468 37.037 0.00 0.00 37.51 2.10
2234 2288 9.883142 GGAGGGAGTATCAAATTCATATAGAAG 57.117 37.037 0.00 0.00 36.75 2.85
2346 2400 4.248691 AGGAATTTCAGCTGCTCAAAAC 57.751 40.909 9.47 0.75 0.00 2.43
2418 2475 0.804989 GTGAGCTCAAATCCCGTTGG 59.195 55.000 20.19 0.00 0.00 3.77
2423 2480 0.179129 CTCAAATCCCGTTGGCATGC 60.179 55.000 9.90 9.90 0.00 4.06
2470 2536 4.413851 TCAGCTCTCCCTCTATCTCACTAA 59.586 45.833 0.00 0.00 0.00 2.24
2544 2612 0.541863 ATTCACTTGCCTACTCCGGG 59.458 55.000 0.00 0.00 0.00 5.73
2742 2831 8.702438 CATTTTTAAGCAAACATCTCACGAAAT 58.298 29.630 0.00 0.00 0.00 2.17
2786 2875 7.466746 AGTAATTTCTAATGGCAAAGCTGAA 57.533 32.000 0.00 0.00 0.00 3.02
2827 2916 8.680039 AATGGCATAAATGATAAAAACCCATG 57.320 30.769 0.00 0.00 30.42 3.66
2847 2936 8.466798 ACCCATGTTAAAATACTTACATCAAGC 58.533 33.333 0.00 0.00 37.83 4.01
2848 2937 7.920682 CCCATGTTAAAATACTTACATCAAGCC 59.079 37.037 0.00 0.00 37.83 4.35
2849 2938 8.686334 CCATGTTAAAATACTTACATCAAGCCT 58.314 33.333 0.00 0.00 37.83 4.58
2850 2939 9.507280 CATGTTAAAATACTTACATCAAGCCTG 57.493 33.333 0.00 0.00 37.83 4.85
2851 2940 8.856153 TGTTAAAATACTTACATCAAGCCTGA 57.144 30.769 0.00 0.00 37.83 3.86
2852 2941 8.726988 TGTTAAAATACTTACATCAAGCCTGAC 58.273 33.333 0.00 0.00 37.83 3.51
2853 2942 8.726988 GTTAAAATACTTACATCAAGCCTGACA 58.273 33.333 0.00 0.00 37.83 3.58
2854 2943 7.759489 AAAATACTTACATCAAGCCTGACAA 57.241 32.000 0.00 0.00 37.83 3.18
2855 2944 7.759489 AAATACTTACATCAAGCCTGACAAA 57.241 32.000 0.00 0.00 37.83 2.83
2856 2945 7.944729 AATACTTACATCAAGCCTGACAAAT 57.055 32.000 0.00 0.00 37.83 2.32
2857 2946 5.886960 ACTTACATCAAGCCTGACAAATC 57.113 39.130 0.00 0.00 37.83 2.17
2858 2947 4.393062 ACTTACATCAAGCCTGACAAATCG 59.607 41.667 0.00 0.00 37.83 3.34
2859 2948 3.057969 ACATCAAGCCTGACAAATCGA 57.942 42.857 0.00 0.00 33.30 3.59
2860 2949 3.411446 ACATCAAGCCTGACAAATCGAA 58.589 40.909 0.00 0.00 33.30 3.71
2861 2950 3.189287 ACATCAAGCCTGACAAATCGAAC 59.811 43.478 0.00 0.00 33.30 3.95
2862 2951 2.844946 TCAAGCCTGACAAATCGAACA 58.155 42.857 0.00 0.00 0.00 3.18
2863 2952 3.411446 TCAAGCCTGACAAATCGAACAT 58.589 40.909 0.00 0.00 0.00 2.71
2864 2953 3.189080 TCAAGCCTGACAAATCGAACATG 59.811 43.478 0.00 0.00 0.00 3.21
2865 2954 2.783135 AGCCTGACAAATCGAACATGT 58.217 42.857 0.00 0.00 0.00 3.21
2866 2955 3.149196 AGCCTGACAAATCGAACATGTT 58.851 40.909 11.78 11.78 0.00 2.71
2867 2956 3.569701 AGCCTGACAAATCGAACATGTTT 59.430 39.130 13.36 0.00 0.00 2.83
2868 2957 4.759693 AGCCTGACAAATCGAACATGTTTA 59.240 37.500 13.36 4.77 0.00 2.01
2869 2958 5.415701 AGCCTGACAAATCGAACATGTTTAT 59.584 36.000 13.36 7.03 0.00 1.40
2870 2959 5.512788 GCCTGACAAATCGAACATGTTTATG 59.487 40.000 13.36 9.88 40.24 1.90
2871 2960 5.512788 CCTGACAAATCGAACATGTTTATGC 59.487 40.000 13.36 0.00 37.85 3.14
2872 2961 5.398169 TGACAAATCGAACATGTTTATGCC 58.602 37.500 13.36 0.00 37.85 4.40
2873 2962 5.048434 TGACAAATCGAACATGTTTATGCCA 60.048 36.000 13.36 4.10 37.85 4.92
2874 2963 5.777802 ACAAATCGAACATGTTTATGCCAA 58.222 33.333 13.36 0.00 37.85 4.52
2875 2964 6.219473 ACAAATCGAACATGTTTATGCCAAA 58.781 32.000 13.36 0.00 37.85 3.28
2876 2965 6.873076 ACAAATCGAACATGTTTATGCCAAAT 59.127 30.769 13.36 0.00 37.85 2.32
2877 2966 7.387397 ACAAATCGAACATGTTTATGCCAAATT 59.613 29.630 13.36 0.21 37.85 1.82
2878 2967 8.867935 CAAATCGAACATGTTTATGCCAAATTA 58.132 29.630 13.36 0.00 37.85 1.40
2879 2968 9.598517 AAATCGAACATGTTTATGCCAAATTAT 57.401 25.926 13.36 0.00 37.85 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
216 218 8.055279 AGACGATCCATGTAATTTGACAAAAT 57.945 30.769 4.41 0.00 37.61 1.82
231 233 5.928976 TGTCAATTCCATAAGACGATCCAT 58.071 37.500 0.00 0.00 33.83 3.41
393 395 1.437625 CTCACACACACACACACACA 58.562 50.000 0.00 0.00 0.00 3.72
507 527 0.253044 GGGTGCTGCCAGATCTTACA 59.747 55.000 0.00 0.00 39.65 2.41
508 528 0.811616 CGGGTGCTGCCAGATCTTAC 60.812 60.000 0.00 0.00 39.65 2.34
509 529 0.975556 TCGGGTGCTGCCAGATCTTA 60.976 55.000 0.00 0.00 36.53 2.10
511 531 2.068821 ATCGGGTGCTGCCAGATCT 61.069 57.895 0.00 0.00 46.93 2.75
512 532 2.507944 ATCGGGTGCTGCCAGATC 59.492 61.111 0.00 0.00 46.93 2.75
514 534 4.147449 CGATCGGGTGCTGCCAGA 62.147 66.667 7.38 3.70 45.24 3.86
518 538 3.567797 GAAGCGATCGGGTGCTGC 61.568 66.667 18.30 0.00 41.46 5.25
519 539 2.892425 GGAAGCGATCGGGTGCTG 60.892 66.667 18.30 0.00 41.46 4.41
520 540 3.077556 AGGAAGCGATCGGGTGCT 61.078 61.111 18.30 1.63 44.97 4.40
521 541 2.892425 CAGGAAGCGATCGGGTGC 60.892 66.667 18.30 0.00 0.00 5.01
522 542 2.202932 CCAGGAAGCGATCGGGTG 60.203 66.667 18.30 0.00 0.00 4.61
523 543 2.363795 TCCAGGAAGCGATCGGGT 60.364 61.111 18.30 0.00 0.00 5.28
524 544 2.127869 TCTCCAGGAAGCGATCGGG 61.128 63.158 18.30 8.39 0.00 5.14
525 545 1.066587 GTCTCCAGGAAGCGATCGG 59.933 63.158 18.30 0.00 0.00 4.18
526 546 1.066587 GGTCTCCAGGAAGCGATCG 59.933 63.158 11.69 11.69 0.00 3.69
527 547 0.755686 ATGGTCTCCAGGAAGCGATC 59.244 55.000 0.00 0.00 36.75 3.69
528 548 0.467384 CATGGTCTCCAGGAAGCGAT 59.533 55.000 0.00 0.00 37.52 4.58
529 549 1.617018 CCATGGTCTCCAGGAAGCGA 61.617 60.000 2.57 0.00 37.52 4.93
530 550 1.153289 CCATGGTCTCCAGGAAGCG 60.153 63.158 2.57 0.00 37.52 4.68
531 551 0.842635 ATCCATGGTCTCCAGGAAGC 59.157 55.000 12.58 0.00 37.52 3.86
532 552 2.507058 TCAATCCATGGTCTCCAGGAAG 59.493 50.000 12.58 3.93 37.52 3.46
533 553 2.561187 TCAATCCATGGTCTCCAGGAA 58.439 47.619 12.58 0.00 37.52 3.36
534 554 2.239654 GTTCAATCCATGGTCTCCAGGA 59.760 50.000 12.58 5.88 37.52 3.86
535 555 2.648059 GTTCAATCCATGGTCTCCAGG 58.352 52.381 12.58 0.00 36.75 4.45
536 556 2.648059 GGTTCAATCCATGGTCTCCAG 58.352 52.381 12.58 0.00 36.75 3.86
537 557 1.284785 GGGTTCAATCCATGGTCTCCA 59.715 52.381 12.58 0.00 38.19 3.86
538 558 1.566231 AGGGTTCAATCCATGGTCTCC 59.434 52.381 12.58 7.06 0.00 3.71
539 559 2.648059 CAGGGTTCAATCCATGGTCTC 58.352 52.381 12.58 0.00 35.89 3.36
540 560 2.814805 CAGGGTTCAATCCATGGTCT 57.185 50.000 12.58 0.00 35.89 3.85
559 579 1.916181 TGAGAGGGAAATGGGAGAACC 59.084 52.381 0.00 0.00 40.81 3.62
560 580 2.356227 GGTGAGAGGGAAATGGGAGAAC 60.356 54.545 0.00 0.00 0.00 3.01
561 581 1.916181 GGTGAGAGGGAAATGGGAGAA 59.084 52.381 0.00 0.00 0.00 2.87
562 582 1.081174 AGGTGAGAGGGAAATGGGAGA 59.919 52.381 0.00 0.00 0.00 3.71
563 583 1.488393 GAGGTGAGAGGGAAATGGGAG 59.512 57.143 0.00 0.00 0.00 4.30
564 584 1.584724 GAGGTGAGAGGGAAATGGGA 58.415 55.000 0.00 0.00 0.00 4.37
565 585 0.179000 CGAGGTGAGAGGGAAATGGG 59.821 60.000 0.00 0.00 0.00 4.00
566 586 0.462759 GCGAGGTGAGAGGGAAATGG 60.463 60.000 0.00 0.00 0.00 3.16
567 587 0.539051 AGCGAGGTGAGAGGGAAATG 59.461 55.000 0.00 0.00 0.00 2.32
568 588 1.280457 AAGCGAGGTGAGAGGGAAAT 58.720 50.000 0.00 0.00 0.00 2.17
569 589 1.933021 TAAGCGAGGTGAGAGGGAAA 58.067 50.000 0.00 0.00 0.00 3.13
570 590 1.933021 TTAAGCGAGGTGAGAGGGAA 58.067 50.000 0.00 0.00 0.00 3.97
571 591 1.825474 CTTTAAGCGAGGTGAGAGGGA 59.175 52.381 0.00 0.00 0.00 4.20
583 603 4.323751 GCGACTATTTGTCACTTTAAGCG 58.676 43.478 0.00 0.00 45.60 4.68
592 612 1.807981 CCGCGGCGACTATTTGTCA 60.808 57.895 25.92 0.00 45.60 3.58
639 659 1.595929 GTTTGACCGGGCTTCGTCA 60.596 57.895 9.82 0.00 37.11 4.35
640 660 1.566018 CTGTTTGACCGGGCTTCGTC 61.566 60.000 9.82 0.00 37.11 4.20
650 670 1.073897 AGCCCAGCTCTGTTTGACC 59.926 57.895 0.00 0.00 30.62 4.02
747 767 1.886542 ACCGAAGCAAAGGATTGTTCC 59.113 47.619 0.00 0.00 42.96 3.62
786 806 2.994387 GATCGATGGACATGCCGCCA 62.994 60.000 0.54 5.17 40.66 5.69
813 833 0.757561 TGGTCGGTCAGGTGAGTTCA 60.758 55.000 0.00 0.00 0.00 3.18
815 835 0.393077 CTTGGTCGGTCAGGTGAGTT 59.607 55.000 0.00 0.00 0.00 3.01
816 836 0.469331 TCTTGGTCGGTCAGGTGAGT 60.469 55.000 0.00 0.00 0.00 3.41
817 837 0.679505 TTCTTGGTCGGTCAGGTGAG 59.320 55.000 0.00 0.00 0.00 3.51
818 838 1.124780 TTTCTTGGTCGGTCAGGTGA 58.875 50.000 0.00 0.00 0.00 4.02
819 839 1.602377 GTTTTCTTGGTCGGTCAGGTG 59.398 52.381 0.00 0.00 0.00 4.00
820 840 1.210967 TGTTTTCTTGGTCGGTCAGGT 59.789 47.619 0.00 0.00 0.00 4.00
821 841 1.961793 TGTTTTCTTGGTCGGTCAGG 58.038 50.000 0.00 0.00 0.00 3.86
822 842 3.058224 GGATTGTTTTCTTGGTCGGTCAG 60.058 47.826 0.00 0.00 0.00 3.51
823 843 2.882137 GGATTGTTTTCTTGGTCGGTCA 59.118 45.455 0.00 0.00 0.00 4.02
824 844 2.882137 TGGATTGTTTTCTTGGTCGGTC 59.118 45.455 0.00 0.00 0.00 4.79
825 845 2.938838 TGGATTGTTTTCTTGGTCGGT 58.061 42.857 0.00 0.00 0.00 4.69
826 846 3.367292 CCATGGATTGTTTTCTTGGTCGG 60.367 47.826 5.56 0.00 0.00 4.79
827 847 3.505680 TCCATGGATTGTTTTCTTGGTCG 59.494 43.478 11.44 0.00 0.00 4.79
828 848 5.394553 GGATCCATGGATTGTTTTCTTGGTC 60.395 44.000 27.93 11.26 34.60 4.02
829 849 4.467438 GGATCCATGGATTGTTTTCTTGGT 59.533 41.667 27.93 1.61 34.60 3.67
832 852 6.704310 CAAAGGATCCATGGATTGTTTTCTT 58.296 36.000 27.93 13.88 34.60 2.52
898 924 0.402121 GAGGGGAGGTATGGAATGGC 59.598 60.000 0.00 0.00 0.00 4.40
941 967 2.445654 GGAGCAGAGGAGGAGGGG 60.446 72.222 0.00 0.00 0.00 4.79
951 977 0.922626 TAGCAGAGGAGAGGAGCAGA 59.077 55.000 0.00 0.00 0.00 4.26
952 978 1.999648 ATAGCAGAGGAGAGGAGCAG 58.000 55.000 0.00 0.00 0.00 4.24
953 979 3.824001 ATATAGCAGAGGAGAGGAGCA 57.176 47.619 0.00 0.00 0.00 4.26
954 980 5.890985 TGAATATATAGCAGAGGAGAGGAGC 59.109 44.000 0.00 0.00 0.00 4.70
957 983 6.514870 GCGATGAATATATAGCAGAGGAGAGG 60.515 46.154 0.00 0.00 0.00 3.69
959 985 5.888161 TGCGATGAATATATAGCAGAGGAGA 59.112 40.000 0.00 0.00 34.46 3.71
976 1002 1.078497 GGTGTCCATGGTGCGATGA 60.078 57.895 12.58 0.00 0.00 2.92
978 1004 0.980754 TAGGGTGTCCATGGTGCGAT 60.981 55.000 12.58 0.00 34.83 4.58
979 1005 1.610967 TAGGGTGTCCATGGTGCGA 60.611 57.895 12.58 0.00 34.83 5.10
981 1007 0.107654 GAGTAGGGTGTCCATGGTGC 60.108 60.000 12.58 6.88 34.83 5.01
983 1009 0.620700 GGGAGTAGGGTGTCCATGGT 60.621 60.000 12.58 0.00 34.14 3.55
1018 1044 0.683412 TGGAGGCTGATGGATCGATG 59.317 55.000 0.54 0.00 0.00 3.84
1019 1045 1.654159 ATGGAGGCTGATGGATCGAT 58.346 50.000 0.00 0.00 0.00 3.59
1020 1046 1.071228 CAATGGAGGCTGATGGATCGA 59.929 52.381 0.00 0.00 0.00 3.59
1021 1047 1.520494 CAATGGAGGCTGATGGATCG 58.480 55.000 0.00 0.00 0.00 3.69
1478 1510 2.046892 CCTCACTTGGCCACCTCG 60.047 66.667 3.88 0.00 0.00 4.63
1692 1735 3.211045 TGTTTTTCAGACACCCACTAGC 58.789 45.455 0.00 0.00 0.00 3.42
1781 1827 2.238646 ACATTACACGTGGGTCATGGAT 59.761 45.455 21.57 0.00 28.88 3.41
1816 1867 3.440522 GGGAAATAGTGAGCCTGAAACAC 59.559 47.826 0.00 0.00 35.15 3.32
1832 1883 7.977853 CGTAGCAGTTATATATTACGGGGAAAT 59.022 37.037 4.57 0.00 32.59 2.17
1835 1886 6.094048 GTCGTAGCAGTTATATATTACGGGGA 59.906 42.308 10.80 0.00 35.78 4.81
1836 1887 6.261118 GTCGTAGCAGTTATATATTACGGGG 58.739 44.000 10.80 1.55 35.78 5.73
1837 1888 6.127925 TGGTCGTAGCAGTTATATATTACGGG 60.128 42.308 10.80 3.49 35.78 5.28
1838 1889 6.845302 TGGTCGTAGCAGTTATATATTACGG 58.155 40.000 10.80 5.42 35.78 4.02
1839 1890 8.906636 ATTGGTCGTAGCAGTTATATATTACG 57.093 34.615 6.19 6.19 36.25 3.18
1847 1898 9.386010 TGTTAAATTATTGGTCGTAGCAGTTAT 57.614 29.630 0.00 0.00 0.00 1.89
1856 1907 7.391148 AGCATTCTGTTAAATTATTGGTCGT 57.609 32.000 0.00 0.00 0.00 4.34
1863 1915 9.811995 TGTAGTCGTAGCATTCTGTTAAATTAT 57.188 29.630 0.00 0.00 0.00 1.28
1875 1927 4.577693 TCCGTAATCTGTAGTCGTAGCATT 59.422 41.667 0.00 0.00 0.00 3.56
1877 1929 3.534554 TCCGTAATCTGTAGTCGTAGCA 58.465 45.455 0.00 0.00 0.00 3.49
1878 1930 4.745837 ATCCGTAATCTGTAGTCGTAGC 57.254 45.455 0.00 0.00 0.00 3.58
1879 1931 8.719648 AGAATAATCCGTAATCTGTAGTCGTAG 58.280 37.037 0.00 0.00 0.00 3.51
1880 1932 8.613060 AGAATAATCCGTAATCTGTAGTCGTA 57.387 34.615 0.00 0.00 0.00 3.43
1881 1933 7.507733 AGAATAATCCGTAATCTGTAGTCGT 57.492 36.000 0.00 0.00 0.00 4.34
1882 1934 7.326305 CCAAGAATAATCCGTAATCTGTAGTCG 59.674 40.741 0.00 0.00 0.00 4.18
1883 1935 8.358148 TCCAAGAATAATCCGTAATCTGTAGTC 58.642 37.037 0.00 0.00 0.00 2.59
1884 1936 8.246430 TCCAAGAATAATCCGTAATCTGTAGT 57.754 34.615 0.00 0.00 0.00 2.73
1907 1959 7.012421 CCACTGTCAGCCTATAAAACTAAATCC 59.988 40.741 0.00 0.00 0.00 3.01
1908 1960 7.012421 CCCACTGTCAGCCTATAAAACTAAATC 59.988 40.741 0.00 0.00 0.00 2.17
1909 1961 6.828785 CCCACTGTCAGCCTATAAAACTAAAT 59.171 38.462 0.00 0.00 0.00 1.40
1910 1962 6.177610 CCCACTGTCAGCCTATAAAACTAAA 58.822 40.000 0.00 0.00 0.00 1.85
1930 1984 0.545548 ACTTCCAGACCTCTCCCCAC 60.546 60.000 0.00 0.00 0.00 4.61
1931 1985 0.193574 AACTTCCAGACCTCTCCCCA 59.806 55.000 0.00 0.00 0.00 4.96
1932 1986 1.363246 AAACTTCCAGACCTCTCCCC 58.637 55.000 0.00 0.00 0.00 4.81
1933 1987 4.471747 AGATAAAACTTCCAGACCTCTCCC 59.528 45.833 0.00 0.00 0.00 4.30
1934 1988 5.685520 AGATAAAACTTCCAGACCTCTCC 57.314 43.478 0.00 0.00 0.00 3.71
1935 1989 7.412853 AGTAGATAAAACTTCCAGACCTCTC 57.587 40.000 0.00 0.00 0.00 3.20
1936 1990 6.381707 GGAGTAGATAAAACTTCCAGACCTCT 59.618 42.308 0.00 0.00 0.00 3.69
1937 1991 6.407187 GGGAGTAGATAAAACTTCCAGACCTC 60.407 46.154 0.00 0.00 41.66 3.85
1938 1992 5.425862 GGGAGTAGATAAAACTTCCAGACCT 59.574 44.000 0.00 0.00 41.66 3.85
1939 1993 5.425862 AGGGAGTAGATAAAACTTCCAGACC 59.574 44.000 3.48 0.00 44.13 3.85
1940 1994 6.407187 GGAGGGAGTAGATAAAACTTCCAGAC 60.407 46.154 3.48 0.00 44.13 3.51
1941 1995 5.661759 GGAGGGAGTAGATAAAACTTCCAGA 59.338 44.000 3.48 0.00 44.13 3.86
1942 1996 5.452077 CGGAGGGAGTAGATAAAACTTCCAG 60.452 48.000 3.48 0.00 44.13 3.86
1943 1997 4.404715 CGGAGGGAGTAGATAAAACTTCCA 59.595 45.833 3.48 0.00 44.13 3.53
1944 1998 4.405036 ACGGAGGGAGTAGATAAAACTTCC 59.595 45.833 0.00 0.00 42.28 3.46
1945 1999 5.595257 ACGGAGGGAGTAGATAAAACTTC 57.405 43.478 0.00 0.00 0.00 3.01
1946 2000 6.013984 TGAAACGGAGGGAGTAGATAAAACTT 60.014 38.462 0.00 0.00 0.00 2.66
1947 2001 5.482878 TGAAACGGAGGGAGTAGATAAAACT 59.517 40.000 0.00 0.00 0.00 2.66
1948 2002 5.579904 GTGAAACGGAGGGAGTAGATAAAAC 59.420 44.000 0.00 0.00 0.00 2.43
1949 2003 5.246656 TGTGAAACGGAGGGAGTAGATAAAA 59.753 40.000 0.00 0.00 42.39 1.52
1950 2004 4.773674 TGTGAAACGGAGGGAGTAGATAAA 59.226 41.667 0.00 0.00 42.39 1.40
1951 2005 4.346730 TGTGAAACGGAGGGAGTAGATAA 58.653 43.478 0.00 0.00 42.39 1.75
1952 2006 3.972133 TGTGAAACGGAGGGAGTAGATA 58.028 45.455 0.00 0.00 42.39 1.98
1953 2007 2.816411 TGTGAAACGGAGGGAGTAGAT 58.184 47.619 0.00 0.00 42.39 1.98
1954 2008 2.297698 TGTGAAACGGAGGGAGTAGA 57.702 50.000 0.00 0.00 42.39 2.59
1955 2009 3.262420 CATTGTGAAACGGAGGGAGTAG 58.738 50.000 0.00 0.00 42.39 2.57
1956 2010 2.635915 ACATTGTGAAACGGAGGGAGTA 59.364 45.455 0.00 0.00 42.39 2.59
1957 2011 1.420138 ACATTGTGAAACGGAGGGAGT 59.580 47.619 0.00 0.00 42.39 3.85
1958 2012 2.185004 ACATTGTGAAACGGAGGGAG 57.815 50.000 0.00 0.00 42.39 4.30
1959 2013 2.614481 GCTACATTGTGAAACGGAGGGA 60.614 50.000 0.00 0.00 42.39 4.20
1960 2014 1.737793 GCTACATTGTGAAACGGAGGG 59.262 52.381 0.00 0.00 42.39 4.30
1961 2015 1.393539 CGCTACATTGTGAAACGGAGG 59.606 52.381 0.00 0.00 42.39 4.30
1962 2016 1.201921 GCGCTACATTGTGAAACGGAG 60.202 52.381 0.00 0.00 42.39 4.63
1963 2017 0.793861 GCGCTACATTGTGAAACGGA 59.206 50.000 0.00 0.00 42.39 4.69
1964 2018 0.515127 TGCGCTACATTGTGAAACGG 59.485 50.000 9.73 0.00 42.39 4.44
1965 2019 2.525750 ATGCGCTACATTGTGAAACG 57.474 45.000 9.73 0.00 42.39 3.60
1966 2020 6.525121 TCTATATGCGCTACATTGTGAAAC 57.475 37.500 9.73 0.00 40.38 2.78
1967 2021 7.728847 AATCTATATGCGCTACATTGTGAAA 57.271 32.000 9.73 0.00 40.38 2.69
1968 2022 7.728847 AAATCTATATGCGCTACATTGTGAA 57.271 32.000 9.73 0.00 40.38 3.18
1969 2023 7.728847 AAAATCTATATGCGCTACATTGTGA 57.271 32.000 9.73 0.00 40.38 3.58
2017 2071 8.020819 TGATTTTCGCTATAAACTTGGTCAAAG 58.979 33.333 0.00 0.00 42.07 2.77
2018 2072 7.877003 TGATTTTCGCTATAAACTTGGTCAAA 58.123 30.769 0.00 0.00 0.00 2.69
2019 2073 7.441890 TGATTTTCGCTATAAACTTGGTCAA 57.558 32.000 0.00 0.00 0.00 3.18
2020 2074 7.624360 ATGATTTTCGCTATAAACTTGGTCA 57.376 32.000 0.00 0.00 0.00 4.02
2034 2088 9.291664 GGTACTCTAGATGTATATGATTTTCGC 57.708 37.037 0.00 0.00 0.00 4.70
2047 2101 9.094578 AGCATATGTATTTGGTACTCTAGATGT 57.905 33.333 4.29 0.00 34.27 3.06
2048 2102 9.935241 AAGCATATGTATTTGGTACTCTAGATG 57.065 33.333 4.29 0.00 34.27 2.90
2064 2118 9.914131 GTCTTGTGATGTATCTAAGCATATGTA 57.086 33.333 4.29 0.00 0.00 2.29
2065 2119 8.424133 TGTCTTGTGATGTATCTAAGCATATGT 58.576 33.333 4.29 0.00 0.00 2.29
2066 2120 8.822652 TGTCTTGTGATGTATCTAAGCATATG 57.177 34.615 0.00 0.00 0.00 1.78
2068 2122 9.914131 GTATGTCTTGTGATGTATCTAAGCATA 57.086 33.333 0.00 13.74 31.11 3.14
2069 2123 8.646004 AGTATGTCTTGTGATGTATCTAAGCAT 58.354 33.333 14.75 14.75 32.01 3.79
2070 2124 8.011844 AGTATGTCTTGTGATGTATCTAAGCA 57.988 34.615 0.00 0.00 0.00 3.91
2071 2125 8.879342 AAGTATGTCTTGTGATGTATCTAAGC 57.121 34.615 0.00 0.00 34.77 3.09
2075 2129 9.539825 GATGAAAGTATGTCTTGTGATGTATCT 57.460 33.333 0.00 0.00 36.40 1.98
2076 2130 9.539825 AGATGAAAGTATGTCTTGTGATGTATC 57.460 33.333 0.00 0.00 36.40 2.24
2077 2131 9.896645 AAGATGAAAGTATGTCTTGTGATGTAT 57.103 29.630 0.00 0.00 36.40 2.29
2079 2133 9.896645 ATAAGATGAAAGTATGTCTTGTGATGT 57.103 29.630 0.00 0.00 36.40 3.06
2128 2182 9.403583 TGACCAAGTTTACAGAGAAAACTATTT 57.596 29.630 1.96 0.00 44.35 1.40
2129 2183 8.974060 TGACCAAGTTTACAGAGAAAACTATT 57.026 30.769 1.96 0.00 44.35 1.73
2130 2184 8.974060 TTGACCAAGTTTACAGAGAAAACTAT 57.026 30.769 1.96 0.00 44.35 2.12
2131 2185 8.795842 TTTGACCAAGTTTACAGAGAAAACTA 57.204 30.769 1.96 0.00 44.35 2.24
2132 2186 7.393515 ACTTTGACCAAGTTTACAGAGAAAACT 59.606 33.333 0.00 0.00 43.89 2.66
2133 2187 7.535997 ACTTTGACCAAGTTTACAGAGAAAAC 58.464 34.615 0.00 0.00 43.89 2.43
2134 2188 7.696992 ACTTTGACCAAGTTTACAGAGAAAA 57.303 32.000 0.00 0.00 43.89 2.29
2183 2237 9.371136 CCGTTTCATAATGTAGTGCATATAGAT 57.629 33.333 0.00 0.00 36.67 1.98
2184 2238 8.581578 TCCGTTTCATAATGTAGTGCATATAGA 58.418 33.333 0.00 0.00 36.67 1.98
2185 2239 8.757164 TCCGTTTCATAATGTAGTGCATATAG 57.243 34.615 0.00 0.00 36.67 1.31
2186 2240 7.817478 CCTCCGTTTCATAATGTAGTGCATATA 59.183 37.037 0.00 0.00 36.67 0.86
2187 2241 6.650807 CCTCCGTTTCATAATGTAGTGCATAT 59.349 38.462 0.00 0.00 36.67 1.78
2188 2242 5.989168 CCTCCGTTTCATAATGTAGTGCATA 59.011 40.000 0.00 0.00 36.67 3.14
2189 2243 4.816385 CCTCCGTTTCATAATGTAGTGCAT 59.184 41.667 0.00 0.00 40.03 3.96
2190 2244 4.188462 CCTCCGTTTCATAATGTAGTGCA 58.812 43.478 0.00 0.00 0.00 4.57
2191 2245 3.560068 CCCTCCGTTTCATAATGTAGTGC 59.440 47.826 0.00 0.00 0.00 4.40
2192 2246 5.018539 TCCCTCCGTTTCATAATGTAGTG 57.981 43.478 0.00 0.00 0.00 2.74
2193 2247 4.715297 ACTCCCTCCGTTTCATAATGTAGT 59.285 41.667 0.00 0.00 0.00 2.73
2194 2248 5.277857 ACTCCCTCCGTTTCATAATGTAG 57.722 43.478 0.00 0.00 0.00 2.74
2195 2249 6.551975 TGATACTCCCTCCGTTTCATAATGTA 59.448 38.462 0.00 0.00 0.00 2.29
2196 2250 5.365605 TGATACTCCCTCCGTTTCATAATGT 59.634 40.000 0.00 0.00 0.00 2.71
2197 2251 5.853936 TGATACTCCCTCCGTTTCATAATG 58.146 41.667 0.00 0.00 0.00 1.90
2198 2252 6.494666 TTGATACTCCCTCCGTTTCATAAT 57.505 37.500 0.00 0.00 0.00 1.28
2199 2253 5.943349 TTGATACTCCCTCCGTTTCATAA 57.057 39.130 0.00 0.00 0.00 1.90
2200 2254 5.943349 TTTGATACTCCCTCCGTTTCATA 57.057 39.130 0.00 0.00 0.00 2.15
2201 2255 4.837093 TTTGATACTCCCTCCGTTTCAT 57.163 40.909 0.00 0.00 0.00 2.57
2202 2256 4.837093 ATTTGATACTCCCTCCGTTTCA 57.163 40.909 0.00 0.00 0.00 2.69
2203 2257 5.183228 TGAATTTGATACTCCCTCCGTTTC 58.817 41.667 0.00 0.00 0.00 2.78
2204 2258 5.174037 TGAATTTGATACTCCCTCCGTTT 57.826 39.130 0.00 0.00 0.00 3.60
2205 2259 4.837093 TGAATTTGATACTCCCTCCGTT 57.163 40.909 0.00 0.00 0.00 4.44
2206 2260 6.688073 ATATGAATTTGATACTCCCTCCGT 57.312 37.500 0.00 0.00 0.00 4.69
2207 2261 8.067751 TCTATATGAATTTGATACTCCCTCCG 57.932 38.462 0.00 0.00 0.00 4.63
2208 2262 9.883142 CTTCTATATGAATTTGATACTCCCTCC 57.117 37.037 0.00 0.00 33.71 4.30
2253 2307 9.767228 AAAAACCCTTTTAACATTAGCGTTAAT 57.233 25.926 0.00 0.00 40.17 1.40
2256 2310 9.414295 GATAAAAACCCTTTTAACATTAGCGTT 57.586 29.630 0.00 0.00 39.75 4.84
2257 2311 8.578151 TGATAAAAACCCTTTTAACATTAGCGT 58.422 29.630 0.00 0.00 39.75 5.07
2258 2312 8.973835 TGATAAAAACCCTTTTAACATTAGCG 57.026 30.769 0.00 0.00 39.75 4.26
2267 2321 9.660180 GTGGCATAAATGATAAAAACCCTTTTA 57.340 29.630 0.00 0.00 40.42 1.52
2268 2322 7.609918 GGTGGCATAAATGATAAAAACCCTTTT 59.390 33.333 0.00 0.00 38.34 2.27
2269 2323 7.109501 GGTGGCATAAATGATAAAAACCCTTT 58.890 34.615 0.00 0.00 0.00 3.11
2346 2400 1.766143 GCCTAACGAAGCGATGGCAG 61.766 60.000 1.50 0.00 43.41 4.85
2418 2475 5.599732 TGTATTTTGGTCATTATGGCATGC 58.400 37.500 9.90 9.90 0.00 4.06
2423 2480 8.249638 TGACATGTTGTATTTTGGTCATTATGG 58.750 33.333 0.00 0.00 0.00 2.74
2470 2536 7.775561 GGATCAAGTGGGACTCATACTTTATTT 59.224 37.037 0.00 0.00 32.69 1.40
2482 2548 2.173569 GCTATTGGGATCAAGTGGGACT 59.826 50.000 0.00 0.00 36.19 3.85
2535 2603 1.258445 ACCTCACTTGCCCGGAGTAG 61.258 60.000 0.73 0.00 0.00 2.57
2742 2831 9.461312 AATTACTACTACTCAAAAATGCCATCA 57.539 29.630 0.00 0.00 0.00 3.07
2781 2870 3.059352 AGTTGTGTCCCACTATTCAGC 57.941 47.619 0.00 0.00 35.11 4.26
2786 2875 3.265737 TGCCATTAGTTGTGTCCCACTAT 59.734 43.478 0.00 0.00 35.11 2.12
2827 2916 8.726988 TGTCAGGCTTGATGTAAGTATTTTAAC 58.273 33.333 0.30 0.00 38.70 2.01
2834 2923 5.580691 CGATTTGTCAGGCTTGATGTAAGTA 59.419 40.000 0.30 0.00 38.70 2.24
2835 2924 4.393062 CGATTTGTCAGGCTTGATGTAAGT 59.607 41.667 0.30 0.00 38.70 2.24
2836 2925 4.631377 TCGATTTGTCAGGCTTGATGTAAG 59.369 41.667 0.30 0.00 39.49 2.34
2839 2928 3.057969 TCGATTTGTCAGGCTTGATGT 57.942 42.857 0.30 0.00 35.39 3.06
2840 2929 3.189080 TGTTCGATTTGTCAGGCTTGATG 59.811 43.478 0.30 0.00 35.39 3.07
2841 2930 3.411446 TGTTCGATTTGTCAGGCTTGAT 58.589 40.909 0.30 0.00 35.39 2.57
2842 2931 2.844946 TGTTCGATTTGTCAGGCTTGA 58.155 42.857 0.00 0.00 0.00 3.02
2843 2932 3.058016 ACATGTTCGATTTGTCAGGCTTG 60.058 43.478 0.00 0.00 0.00 4.01
2844 2933 3.149196 ACATGTTCGATTTGTCAGGCTT 58.851 40.909 0.00 0.00 0.00 4.35
2845 2934 2.783135 ACATGTTCGATTTGTCAGGCT 58.217 42.857 0.00 0.00 0.00 4.58
2846 2935 3.559238 AACATGTTCGATTTGTCAGGC 57.441 42.857 4.92 0.00 0.00 4.85
2847 2936 5.512788 GCATAAACATGTTCGATTTGTCAGG 59.487 40.000 12.39 0.00 0.00 3.86
2848 2937 5.512788 GGCATAAACATGTTCGATTTGTCAG 59.487 40.000 12.39 0.00 0.00 3.51
2849 2938 5.048434 TGGCATAAACATGTTCGATTTGTCA 60.048 36.000 12.39 6.95 0.00 3.58
2850 2939 5.398169 TGGCATAAACATGTTCGATTTGTC 58.602 37.500 12.39 4.35 0.00 3.18
2851 2940 5.384063 TGGCATAAACATGTTCGATTTGT 57.616 34.783 12.39 0.00 0.00 2.83
2852 2941 6.702972 TTTGGCATAAACATGTTCGATTTG 57.297 33.333 12.39 3.37 0.00 2.32
2853 2942 7.903995 AATTTGGCATAAACATGTTCGATTT 57.096 28.000 12.39 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.