Multiple sequence alignment - TraesCS2A01G036600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G036600 chr2A 100.000 4942 0 0 1 4942 15632547 15637488 0.000000e+00 9127.0
1 TraesCS2A01G036600 chr2B 96.268 4207 143 12 3 4202 24703722 24707921 0.000000e+00 6887.0
2 TraesCS2A01G036600 chr2B 90.954 3460 269 28 768 4202 24816904 24820344 0.000000e+00 4615.0
3 TraesCS2A01G036600 chr2B 95.082 732 29 3 4213 4942 24707903 24708629 0.000000e+00 1146.0
4 TraesCS2A01G036600 chr2B 78.196 1275 206 50 878 2121 24509237 24508004 0.000000e+00 749.0
5 TraesCS2A01G036600 chr2B 76.187 1474 267 56 2173 3606 24508017 24506588 0.000000e+00 701.0
6 TraesCS2A01G036600 chr2B 81.885 679 103 15 1156 1829 24835930 24836593 5.590000e-154 555.0
7 TraesCS2A01G036600 chr2B 78.829 803 132 27 2598 3383 24837910 24838691 1.590000e-139 507.0
8 TraesCS2A01G036600 chr2B 86.423 383 44 5 3603 3983 24505218 24504842 3.560000e-111 412.0
9 TraesCS2A01G036600 chr2B 90.592 287 22 4 4213 4496 24820325 24820609 4.670000e-100 375.0
10 TraesCS2A01G036600 chr2B 91.195 159 14 0 4515 4673 24692163 24692321 3.000000e-52 217.0
11 TraesCS2A01G036600 chr2D 93.342 2298 129 12 768 3059 13604843 13607122 0.000000e+00 3374.0
12 TraesCS2A01G036600 chr2D 91.978 1471 78 26 3029 4496 13607120 13608553 0.000000e+00 2026.0
13 TraesCS2A01G036600 chr2D 77.372 2024 368 65 2173 4149 13541895 13539915 0.000000e+00 1118.0
14 TraesCS2A01G036600 chr2D 82.504 1246 170 23 2966 4200 13616950 13618158 0.000000e+00 1050.0
15 TraesCS2A01G036600 chr2D 80.851 1034 154 29 878 1898 13543088 13542086 0.000000e+00 773.0
16 TraesCS2A01G036600 chr2D 81.346 327 38 10 4515 4825 13596251 13596570 1.370000e-60 244.0
17 TraesCS2A01G036600 chr2D 84.513 226 32 1 4515 4737 13590900 13591125 2.320000e-53 220.0
18 TraesCS2A01G036600 chr7D 91.088 763 64 4 7 767 494291196 494290436 0.000000e+00 1029.0
19 TraesCS2A01G036600 chr4D 89.857 769 70 6 3 767 9552925 9552161 0.000000e+00 981.0
20 TraesCS2A01G036600 chr7B 89.337 769 78 3 3 767 107990390 107989622 0.000000e+00 963.0
21 TraesCS2A01G036600 chr3B 88.197 771 79 6 3 767 523713844 523714608 0.000000e+00 909.0
22 TraesCS2A01G036600 chr3D 88.083 772 78 12 3 767 520954563 520955327 0.000000e+00 904.0
23 TraesCS2A01G036600 chr3D 86.476 769 98 6 3 767 586279475 586278709 0.000000e+00 839.0
24 TraesCS2A01G036600 chr7A 87.792 770 85 8 3 767 553409008 553409773 0.000000e+00 893.0
25 TraesCS2A01G036600 chr5D 86.458 768 97 6 3 767 525952636 525953399 0.000000e+00 835.0
26 TraesCS2A01G036600 chr5D 75.111 225 46 8 1272 1491 6484475 6484256 4.070000e-16 97.1
27 TraesCS2A01G036600 chr5B 71.131 1008 245 37 2942 3926 6624913 6625897 1.800000e-49 207.0
28 TraesCS2A01G036600 chr5A 73.874 222 50 7 1274 1491 3168158 3168375 1.140000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G036600 chr2A 15632547 15637488 4941 False 9127.000000 9127 100.000000 1 4942 1 chr2A.!!$F1 4941
1 TraesCS2A01G036600 chr2B 24703722 24708629 4907 False 4016.500000 6887 95.675000 3 4942 2 chr2B.!!$F2 4939
2 TraesCS2A01G036600 chr2B 24816904 24820609 3705 False 2495.000000 4615 90.773000 768 4496 2 chr2B.!!$F3 3728
3 TraesCS2A01G036600 chr2B 24504842 24509237 4395 True 620.666667 749 80.268667 878 3983 3 chr2B.!!$R1 3105
4 TraesCS2A01G036600 chr2B 24835930 24838691 2761 False 531.000000 555 80.357000 1156 3383 2 chr2B.!!$F4 2227
5 TraesCS2A01G036600 chr2D 13604843 13608553 3710 False 2700.000000 3374 92.660000 768 4496 2 chr2D.!!$F4 3728
6 TraesCS2A01G036600 chr2D 13616950 13618158 1208 False 1050.000000 1050 82.504000 2966 4200 1 chr2D.!!$F3 1234
7 TraesCS2A01G036600 chr2D 13539915 13543088 3173 True 945.500000 1118 79.111500 878 4149 2 chr2D.!!$R1 3271
8 TraesCS2A01G036600 chr7D 494290436 494291196 760 True 1029.000000 1029 91.088000 7 767 1 chr7D.!!$R1 760
9 TraesCS2A01G036600 chr4D 9552161 9552925 764 True 981.000000 981 89.857000 3 767 1 chr4D.!!$R1 764
10 TraesCS2A01G036600 chr7B 107989622 107990390 768 True 963.000000 963 89.337000 3 767 1 chr7B.!!$R1 764
11 TraesCS2A01G036600 chr3B 523713844 523714608 764 False 909.000000 909 88.197000 3 767 1 chr3B.!!$F1 764
12 TraesCS2A01G036600 chr3D 520954563 520955327 764 False 904.000000 904 88.083000 3 767 1 chr3D.!!$F1 764
13 TraesCS2A01G036600 chr3D 586278709 586279475 766 True 839.000000 839 86.476000 3 767 1 chr3D.!!$R1 764
14 TraesCS2A01G036600 chr7A 553409008 553409773 765 False 893.000000 893 87.792000 3 767 1 chr7A.!!$F1 764
15 TraesCS2A01G036600 chr5D 525952636 525953399 763 False 835.000000 835 86.458000 3 767 1 chr5D.!!$F1 764
16 TraesCS2A01G036600 chr5B 6624913 6625897 984 False 207.000000 207 71.131000 2942 3926 1 chr5B.!!$F1 984

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 829 1.003580 ACATGGCGATCCTGAGTTTGT 59.996 47.619 0.00 0.0 0.00 2.83 F
1294 1320 0.617820 GGTTGGGCCAGAGGTCTCTA 60.618 60.000 6.23 0.0 37.98 2.43 F
2478 2569 1.271379 CCCTGATATTTGGTAGGGGCG 60.271 57.143 0.00 0.0 44.99 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1701 2.245159 TGGACAGAACAGACTGCAAG 57.755 50.000 1.25 0.0 41.06 4.01 R
3143 3949 2.355363 TCTCGTCGGTGGTTTGCG 60.355 61.111 0.00 0.0 0.00 4.85 R
4096 6300 1.269517 GCCGACAAGCCAAATGTTTGA 60.270 47.619 7.04 0.0 40.55 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 6.260714 TGATCATAAACTCACAATTCATCGGG 59.739 38.462 0.00 0.00 0.00 5.14
113 114 1.790755 TCATCGGGTCTCAACAAACG 58.209 50.000 0.00 0.00 0.00 3.60
162 164 5.310409 AGATCTCCAAGAACAACAAGGAA 57.690 39.130 0.00 0.00 0.00 3.36
182 184 8.755018 CAAGGAAAACATTGTATTGAGAAACAC 58.245 33.333 0.00 0.00 0.00 3.32
193 195 6.706270 TGTATTGAGAAACACCAAGAGAGAAC 59.294 38.462 0.00 0.00 0.00 3.01
424 427 9.629649 TCCTGATTTATGGGTATTTATAGAGGT 57.370 33.333 0.00 0.00 0.00 3.85
661 678 6.567050 TGGCACTAAGTTAATAGGTTAGTCG 58.433 40.000 0.00 0.00 35.30 4.18
809 829 1.003580 ACATGGCGATCCTGAGTTTGT 59.996 47.619 0.00 0.00 0.00 2.83
990 1015 8.301730 CATGATTTTCATGTTTTTGCAGTACT 57.698 30.769 8.92 0.00 46.80 2.73
1029 1055 3.928727 AGCAACATGGACTTGACAATG 57.071 42.857 0.00 0.00 0.00 2.82
1244 1270 3.692593 AGGTTTGGTAGTGTGTTCACAAC 59.307 43.478 7.22 3.57 46.01 3.32
1294 1320 0.617820 GGTTGGGCCAGAGGTCTCTA 60.618 60.000 6.23 0.00 37.98 2.43
1663 1696 4.380531 AGCAACTTTGACTCTGATTTCGA 58.619 39.130 0.00 0.00 0.00 3.71
1668 1701 7.149063 GCAACTTTGACTCTGATTTCGATTTTC 60.149 37.037 0.00 0.00 0.00 2.29
1700 1742 4.836175 TGTTCTGTCCAATGTCCTGTAGTA 59.164 41.667 0.00 0.00 0.00 1.82
1705 1747 5.730550 TGTCCAATGTCCTGTAGTATGTTC 58.269 41.667 0.00 0.00 0.00 3.18
1740 1782 6.656003 ACGAAGTCAGTTTGTATGCTAAAAC 58.344 36.000 0.00 0.00 29.74 2.43
1744 1786 9.463443 GAAGTCAGTTTGTATGCTAAAACAATT 57.537 29.630 0.00 0.00 38.48 2.32
1829 1871 6.597672 TGTTTCTCACTTTGCTAAGTCTCAAA 59.402 34.615 10.73 7.04 42.67 2.69
1865 1907 8.938801 TGAGCCCATATGTTATTGTGAATATT 57.061 30.769 1.24 0.00 0.00 1.28
1933 1978 1.645034 ATTCGTCTGCAGTCCAATCG 58.355 50.000 14.67 10.05 0.00 3.34
2010 2073 7.687445 ACAATGAACTTTGATTGCTTGTTTTC 58.313 30.769 1.56 0.00 35.56 2.29
2011 2074 7.550196 ACAATGAACTTTGATTGCTTGTTTTCT 59.450 29.630 1.56 0.00 35.56 2.52
2012 2075 9.033481 CAATGAACTTTGATTGCTTGTTTTCTA 57.967 29.630 0.00 0.00 0.00 2.10
2216 2299 9.696917 GTTTAGTCTCCATGTTCATCAAATTTT 57.303 29.630 0.00 0.00 0.00 1.82
2478 2569 1.271379 CCCTGATATTTGGTAGGGGCG 60.271 57.143 0.00 0.00 44.99 6.13
2641 3390 6.996180 TGGTACCCATGAAATTACCAAAAA 57.004 33.333 10.07 0.00 40.82 1.94
3143 3949 2.753168 GCTCCCATATTTCCCTGTTCCC 60.753 54.545 0.00 0.00 0.00 3.97
3727 5914 4.717280 AGAGGAGGATAAAGTTGGTGGTAG 59.283 45.833 0.00 0.00 0.00 3.18
4025 6229 7.502895 TGTGGTAATACATGTTTGGTAGTTGTT 59.497 33.333 2.30 0.00 0.00 2.83
4182 6386 8.146479 TCTTTATGTTTATCTACATGCTGCAG 57.854 34.615 10.11 10.11 39.06 4.41
4188 6392 0.325933 TCTACATGCTGCAGCCAGTT 59.674 50.000 34.64 18.72 41.26 3.16
4189 6393 1.171308 CTACATGCTGCAGCCAGTTT 58.829 50.000 34.64 16.98 41.26 2.66
4190 6394 2.027285 TCTACATGCTGCAGCCAGTTTA 60.027 45.455 34.64 16.51 41.26 2.01
4191 6395 1.843368 ACATGCTGCAGCCAGTTTAT 58.157 45.000 34.64 18.12 41.26 1.40
4192 6396 2.173519 ACATGCTGCAGCCAGTTTATT 58.826 42.857 34.64 8.79 41.26 1.40
4193 6397 3.355378 ACATGCTGCAGCCAGTTTATTA 58.645 40.909 34.64 14.14 41.26 0.98
4194 6398 3.956199 ACATGCTGCAGCCAGTTTATTAT 59.044 39.130 34.64 15.87 41.26 1.28
4195 6399 4.403432 ACATGCTGCAGCCAGTTTATTATT 59.597 37.500 34.64 6.69 41.26 1.40
4196 6400 4.637483 TGCTGCAGCCAGTTTATTATTC 57.363 40.909 34.64 3.71 41.26 1.75
4197 6401 4.272489 TGCTGCAGCCAGTTTATTATTCT 58.728 39.130 34.64 0.00 41.26 2.40
4198 6402 4.706476 TGCTGCAGCCAGTTTATTATTCTT 59.294 37.500 34.64 0.00 41.26 2.52
4199 6403 5.185635 TGCTGCAGCCAGTTTATTATTCTTT 59.814 36.000 34.64 0.00 41.26 2.52
4200 6404 6.101997 GCTGCAGCCAGTTTATTATTCTTTT 58.898 36.000 28.76 0.00 41.26 2.27
4201 6405 6.591448 GCTGCAGCCAGTTTATTATTCTTTTT 59.409 34.615 28.76 0.00 41.26 1.94
4302 6506 7.613801 ACATACTAAAAGCACAATATGGGTCAA 59.386 33.333 0.00 0.00 0.00 3.18
4396 6602 8.516234 CACAACCTATATCCTAGATGTACTGTC 58.484 40.741 0.00 0.00 0.00 3.51
4499 6705 2.923629 AGTCCCAGTCCTTACTCTCTCT 59.076 50.000 0.00 0.00 31.97 3.10
4506 6712 3.592427 AGTCCTTACTCTCTCTGGGTACA 59.408 47.826 0.00 0.00 0.00 2.90
4507 6713 4.044317 AGTCCTTACTCTCTCTGGGTACAA 59.956 45.833 0.00 0.00 0.00 2.41
4511 6717 7.288158 GTCCTTACTCTCTCTGGGTACAATTAT 59.712 40.741 0.00 0.00 0.00 1.28
4568 6774 1.425066 AGAAAGACACCAAGATGGCCA 59.575 47.619 8.56 8.56 42.67 5.36
4570 6776 0.606401 AAGACACCAAGATGGCCACG 60.606 55.000 8.16 0.00 42.67 4.94
4616 6822 5.178061 ACGATATGTTTCAGTCATTCAGCA 58.822 37.500 0.00 0.00 0.00 4.41
4627 6833 1.077930 ATTCAGCATGCTCGCCTGT 60.078 52.632 19.68 0.00 34.76 4.00
4630 6836 4.074526 AGCATGCTCGCCTGTCGT 62.075 61.111 16.30 0.00 39.67 4.34
4640 6846 1.749063 TCGCCTGTCGTGATACTTCAT 59.251 47.619 0.00 0.00 39.67 2.57
4650 6856 5.049828 TCGTGATACTTCATAGGCACAATG 58.950 41.667 0.00 0.00 33.56 2.82
4661 6867 1.248101 GGCACAATGGTTTAGGCCGT 61.248 55.000 0.00 0.00 0.00 5.68
4707 6913 3.782046 TCGACGATCAAGAAATCTTCCC 58.218 45.455 0.00 0.00 33.11 3.97
4811 7019 2.459060 TCGCCTTCGGTTCACATTAA 57.541 45.000 0.00 0.00 36.13 1.40
4812 7020 2.980568 TCGCCTTCGGTTCACATTAAT 58.019 42.857 0.00 0.00 36.13 1.40
4813 7021 3.340034 TCGCCTTCGGTTCACATTAATT 58.660 40.909 0.00 0.00 36.13 1.40
4814 7022 4.505808 TCGCCTTCGGTTCACATTAATTA 58.494 39.130 0.00 0.00 36.13 1.40
4850 7058 5.273944 AGTTTGATTTCTTGTTCGAACTGC 58.726 37.500 27.32 3.51 42.37 4.40
4859 7067 5.237815 TCTTGTTCGAACTGCTATGTCAAT 58.762 37.500 27.32 0.00 0.00 2.57
4882 7090 5.984725 TCACTAAATGATAACCGGTCATGT 58.015 37.500 8.04 4.96 36.49 3.21
4904 7112 2.024319 GCGCGCTTCTCTTCTGTGT 61.024 57.895 26.67 0.00 0.00 3.72
4924 7132 3.185594 TGTGCTTTCCTGTTCGTATTTCG 59.814 43.478 0.00 0.00 41.41 3.46
4938 7146 4.871557 TCGTATTTCGGGTAATGGAAACAG 59.128 41.667 0.00 0.00 41.73 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 0.730265 TGTGGTGCGTTTGTTGAGAC 59.270 50.000 0.00 0.00 0.00 3.36
113 114 5.527951 TGATGTAATGACTTTTTGTGGTGC 58.472 37.500 0.00 0.00 0.00 5.01
162 164 8.006298 TCTTGGTGTTTCTCAATACAATGTTT 57.994 30.769 0.00 0.00 0.00 2.83
182 184 3.347077 AGATGGCTTGTTCTCTCTTGG 57.653 47.619 0.00 0.00 0.00 3.61
193 195 6.209589 TCCATAGTTAGTAGCTAGATGGCTTG 59.790 42.308 9.77 0.00 42.97 4.01
329 332 3.708631 TCTGTTCTTGAGAGATCCCATCC 59.291 47.826 0.00 0.00 0.00 3.51
424 427 2.972713 AGCTCTGTTTGACCTAACTCCA 59.027 45.455 0.00 0.00 0.00 3.86
560 574 2.507339 AGTCCAAATGCCACAAAACG 57.493 45.000 0.00 0.00 0.00 3.60
624 640 0.758734 AGTGCCAGTGTCAGTTGCTA 59.241 50.000 5.42 0.00 0.00 3.49
809 829 3.900892 GGCTAGCTAGGCGACGCA 61.901 66.667 29.08 0.06 39.15 5.24
990 1015 3.130340 TGCTATCGTGCATAGTTCTGTCA 59.870 43.478 0.00 0.00 37.41 3.58
1029 1055 1.579429 GAACAACCACATGGCGTCC 59.421 57.895 0.00 0.00 39.32 4.79
1244 1270 9.317936 AGCTTATTCTTTTCCAAAGAAAACTTG 57.682 29.630 14.08 6.26 44.99 3.16
1294 1320 4.777463 TCCGAACCTTGAAAGAAAAGACT 58.223 39.130 0.00 0.00 0.00 3.24
1663 1696 4.276926 GGACAGAACAGACTGCAAGAAAAT 59.723 41.667 1.25 0.00 41.06 1.82
1668 1701 2.245159 TGGACAGAACAGACTGCAAG 57.755 50.000 1.25 0.00 41.06 4.01
1700 1742 9.383519 ACTGACTTCGTTGATTATATTGAACAT 57.616 29.630 0.00 0.00 0.00 2.71
1829 1871 2.299326 ATGGGCTCAAAGTTGCTCTT 57.701 45.000 0.00 0.00 38.10 2.85
2070 2140 8.801882 TCTAAATTGTGTAGATTTCGGGAAAT 57.198 30.769 6.36 6.36 43.14 2.17
2072 2142 6.315393 GCTCTAAATTGTGTAGATTTCGGGAA 59.685 38.462 0.00 0.00 0.00 3.97
2075 2145 6.313905 AGTGCTCTAAATTGTGTAGATTTCGG 59.686 38.462 0.00 0.00 0.00 4.30
2478 2569 4.833938 TGTGGTACCAAAATTCTAAACCCC 59.166 41.667 18.31 0.00 0.00 4.95
2641 3390 8.558973 TCAAAGTTTCAACAATGTTTCCAAAT 57.441 26.923 0.00 0.00 0.00 2.32
2736 3502 5.861727 ACACTACTACGAAGGAAACCAATT 58.138 37.500 0.00 0.00 0.00 2.32
2737 3503 5.479124 ACACTACTACGAAGGAAACCAAT 57.521 39.130 0.00 0.00 0.00 3.16
3143 3949 2.355363 TCTCGTCGGTGGTTTGCG 60.355 61.111 0.00 0.00 0.00 4.85
3727 5914 6.017109 ACCACCAAATATTGCGTATGAGAATC 60.017 38.462 0.00 0.00 0.00 2.52
4025 6229 3.737559 ATGATGCCCTAGAAACCACAA 57.262 42.857 0.00 0.00 0.00 3.33
4096 6300 1.269517 GCCGACAAGCCAAATGTTTGA 60.270 47.619 7.04 0.00 40.55 2.69
4175 6379 4.272489 AGAATAATAAACTGGCTGCAGCA 58.728 39.130 37.63 23.01 44.36 4.41
4200 6404 9.541884 AGAATAATAAACTGGCTTCCCTAAAAA 57.458 29.630 0.00 0.00 0.00 1.94
4307 6511 5.838521 TGGGAATTTCTAGCCTGTTTTCTTT 59.161 36.000 0.00 0.00 0.00 2.52
4409 6615 6.383415 GCAACGATGGGTAATTTGTTCTAAA 58.617 36.000 0.00 0.00 0.00 1.85
4499 6705 7.713507 GCACACTGAGTATAATAATTGTACCCA 59.286 37.037 0.00 0.00 0.00 4.51
4506 6712 8.551205 CGATGTTGCACACTGAGTATAATAATT 58.449 33.333 0.00 0.00 0.00 1.40
4507 6713 7.926018 TCGATGTTGCACACTGAGTATAATAAT 59.074 33.333 0.00 0.00 0.00 1.28
4511 6717 4.862574 GTCGATGTTGCACACTGAGTATAA 59.137 41.667 0.00 0.00 0.00 0.98
4535 6741 0.472471 TCTTTCTCCTTGCCACCGTT 59.528 50.000 0.00 0.00 0.00 4.44
4568 6774 0.957395 CAGTGGAAGCTTGATGGCGT 60.957 55.000 2.10 0.00 37.29 5.68
4570 6776 1.093159 CTCAGTGGAAGCTTGATGGC 58.907 55.000 2.10 0.00 0.00 4.40
4616 6822 0.249073 GTATCACGACAGGCGAGCAT 60.249 55.000 0.22 0.00 44.57 3.79
4627 6833 4.729227 TTGTGCCTATGAAGTATCACGA 57.271 40.909 0.00 0.00 38.69 4.35
4630 6836 5.372343 ACCATTGTGCCTATGAAGTATCA 57.628 39.130 0.00 0.00 40.57 2.15
4640 6846 1.680555 CGGCCTAAACCATTGTGCCTA 60.681 52.381 0.00 0.00 35.51 3.93
4650 6856 0.392060 CCTACACCACGGCCTAAACC 60.392 60.000 0.00 0.00 0.00 3.27
4661 6867 2.154798 GAGCACTCACGCCTACACCA 62.155 60.000 0.00 0.00 0.00 4.17
4696 6902 3.071023 TCTGACACAACGGGAAGATTTCT 59.929 43.478 0.00 0.00 0.00 2.52
4707 6913 5.637810 ACACTGGTAATAATCTGACACAACG 59.362 40.000 0.00 0.00 0.00 4.10
4811 7019 8.511604 AAATCAAACTGTATACTGCAGCTAAT 57.488 30.769 15.27 7.83 37.47 1.73
4812 7020 7.824289 AGAAATCAAACTGTATACTGCAGCTAA 59.176 33.333 15.27 0.00 37.47 3.09
4813 7021 7.331026 AGAAATCAAACTGTATACTGCAGCTA 58.669 34.615 15.27 6.05 37.47 3.32
4814 7022 6.176183 AGAAATCAAACTGTATACTGCAGCT 58.824 36.000 15.27 3.85 37.47 4.24
4850 7058 8.712363 CCGGTTATCATTTAGTGATTGACATAG 58.288 37.037 0.00 0.00 45.25 2.23
4859 7067 5.815222 CACATGACCGGTTATCATTTAGTGA 59.185 40.000 9.42 0.00 42.06 3.41
4882 7090 1.300931 AGAAGAGAAGCGCGCAACA 60.301 52.632 35.10 0.00 0.00 3.33
4904 7112 2.739913 CCGAAATACGAACAGGAAAGCA 59.260 45.455 0.00 0.00 45.77 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.