Multiple sequence alignment - TraesCS2A01G036200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G036200 chr2A 100.000 3533 0 0 1 3533 15601459 15604991 0.000000e+00 6525.0
1 TraesCS2A01G036200 chr2A 83.003 1465 201 32 979 2412 15460280 15458833 0.000000e+00 1282.0
2 TraesCS2A01G036200 chr2A 83.286 1394 205 19 996 2371 15467791 15466408 0.000000e+00 1258.0
3 TraesCS2A01G036200 chr2A 82.857 1400 173 38 976 2365 15450036 15448694 0.000000e+00 1194.0
4 TraesCS2A01G036200 chr2B 89.425 2260 174 30 525 2739 24216553 24218792 0.000000e+00 2789.0
5 TraesCS2A01G036200 chr2B 83.883 1396 196 18 996 2371 24110296 24108910 0.000000e+00 1304.0
6 TraesCS2A01G036200 chr2B 83.661 1426 181 30 987 2393 24098695 24097303 0.000000e+00 1295.0
7 TraesCS2A01G036200 chr2B 82.744 1414 205 25 983 2371 24124397 24125796 0.000000e+00 1223.0
8 TraesCS2A01G036200 chr2B 81.779 1405 211 31 979 2365 772982271 772980894 0.000000e+00 1134.0
9 TraesCS2A01G036200 chr2B 86.717 798 67 21 2762 3530 24233874 24234661 0.000000e+00 850.0
10 TraesCS2A01G036200 chr2B 89.189 629 54 7 949 1564 24215274 24215901 0.000000e+00 773.0
11 TraesCS2A01G036200 chr2D 91.511 1708 123 13 904 2603 13508750 13510443 0.000000e+00 2331.0
12 TraesCS2A01G036200 chr2D 84.429 1400 178 27 996 2371 13476038 13474655 0.000000e+00 1341.0
13 TraesCS2A01G036200 chr2D 92.044 905 50 16 1 888 13507755 13508654 0.000000e+00 1253.0
14 TraesCS2A01G036200 chr2D 81.922 1405 207 33 979 2365 630011229 630009854 0.000000e+00 1144.0
15 TraesCS2A01G036200 chr2D 80.638 1441 206 50 953 2373 13483042 13481655 0.000000e+00 1048.0
16 TraesCS2A01G036200 chr2D 82.819 745 66 29 2829 3531 13523537 13524261 8.380000e-171 610.0
17 TraesCS2A01G036200 chr2D 78.862 738 109 27 1638 2365 13435152 13434452 4.160000e-124 455.0
18 TraesCS2A01G036200 chr2D 87.190 242 28 2 1010 1248 13439664 13439423 4.490000e-69 272.0
19 TraesCS2A01G036200 chr2D 95.714 70 2 1 2759 2827 13523440 13523509 1.040000e-20 111.0
20 TraesCS2A01G036200 chr2D 92.857 42 2 1 3 44 30677852 30677812 3.810000e-05 60.2
21 TraesCS2A01G036200 chr1D 96.258 481 15 3 49 528 67204685 67204207 0.000000e+00 785.0
22 TraesCS2A01G036200 chr5B 95.258 485 21 2 46 529 690617720 690618203 0.000000e+00 767.0
23 TraesCS2A01G036200 chr5B 94.737 38 2 0 3 40 702139851 702139814 3.810000e-05 60.2
24 TraesCS2A01G036200 chr3B 94.867 487 22 2 50 535 534220126 534219642 0.000000e+00 758.0
25 TraesCS2A01G036200 chr3D 94.856 486 22 2 48 532 564987722 564987239 0.000000e+00 756.0
26 TraesCS2A01G036200 chr1B 94.639 485 22 3 48 528 338606946 338607430 0.000000e+00 749.0
27 TraesCS2A01G036200 chr1B 94.227 485 23 4 48 528 340329579 340329096 0.000000e+00 736.0
28 TraesCS2A01G036200 chr7D 94.251 487 26 2 48 532 76411054 76410568 0.000000e+00 743.0
29 TraesCS2A01G036200 chr6D 94.398 482 26 1 48 528 293396748 293397229 0.000000e+00 739.0
30 TraesCS2A01G036200 chrUn 94.737 38 2 0 3 40 247036313 247036276 3.810000e-05 60.2
31 TraesCS2A01G036200 chrUn 94.737 38 2 0 3 40 247045440 247045403 3.810000e-05 60.2
32 TraesCS2A01G036200 chrUn 94.737 38 2 0 3 40 377128225 377128188 3.810000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G036200 chr2A 15601459 15604991 3532 False 6525.0 6525 100.0000 1 3533 1 chr2A.!!$F1 3532
1 TraesCS2A01G036200 chr2A 15458833 15460280 1447 True 1282.0 1282 83.0030 979 2412 1 chr2A.!!$R2 1433
2 TraesCS2A01G036200 chr2A 15466408 15467791 1383 True 1258.0 1258 83.2860 996 2371 1 chr2A.!!$R3 1375
3 TraesCS2A01G036200 chr2A 15448694 15450036 1342 True 1194.0 1194 82.8570 976 2365 1 chr2A.!!$R1 1389
4 TraesCS2A01G036200 chr2B 24215274 24218792 3518 False 1781.0 2789 89.3070 525 2739 2 chr2B.!!$F3 2214
5 TraesCS2A01G036200 chr2B 24108910 24110296 1386 True 1304.0 1304 83.8830 996 2371 1 chr2B.!!$R2 1375
6 TraesCS2A01G036200 chr2B 24097303 24098695 1392 True 1295.0 1295 83.6610 987 2393 1 chr2B.!!$R1 1406
7 TraesCS2A01G036200 chr2B 24124397 24125796 1399 False 1223.0 1223 82.7440 983 2371 1 chr2B.!!$F1 1388
8 TraesCS2A01G036200 chr2B 772980894 772982271 1377 True 1134.0 1134 81.7790 979 2365 1 chr2B.!!$R3 1386
9 TraesCS2A01G036200 chr2B 24233874 24234661 787 False 850.0 850 86.7170 2762 3530 1 chr2B.!!$F2 768
10 TraesCS2A01G036200 chr2D 13507755 13510443 2688 False 1792.0 2331 91.7775 1 2603 2 chr2D.!!$F1 2602
11 TraesCS2A01G036200 chr2D 13474655 13476038 1383 True 1341.0 1341 84.4290 996 2371 1 chr2D.!!$R3 1375
12 TraesCS2A01G036200 chr2D 630009854 630011229 1375 True 1144.0 1144 81.9220 979 2365 1 chr2D.!!$R6 1386
13 TraesCS2A01G036200 chr2D 13481655 13483042 1387 True 1048.0 1048 80.6380 953 2373 1 chr2D.!!$R4 1420
14 TraesCS2A01G036200 chr2D 13434452 13435152 700 True 455.0 455 78.8620 1638 2365 1 chr2D.!!$R1 727
15 TraesCS2A01G036200 chr2D 13523440 13524261 821 False 360.5 610 89.2665 2759 3531 2 chr2D.!!$F2 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 689 0.030101 CGAACCAAAATGCACCACGT 59.97 50.0 0.0 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2573 4452 0.179026 AGAGCGCATTCATCCATGCT 60.179 50.0 11.47 0.0 46.43 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.060038 TCATCGCCACTTCCTTATCTTC 57.940 45.455 0.00 0.00 0.00 2.87
104 105 9.733556 AACCAACATAGTTATTACAATCACTCA 57.266 29.630 0.00 0.00 0.00 3.41
122 123 4.616802 CACTCATTACAAAATTCACCACGC 59.383 41.667 0.00 0.00 0.00 5.34
124 125 5.188327 TCATTACAAAATTCACCACGCAA 57.812 34.783 0.00 0.00 0.00 4.85
149 150 5.413499 GCGGAACACCACTAACTAAGATAA 58.587 41.667 0.00 0.00 0.00 1.75
153 154 7.548075 CGGAACACCACTAACTAAGATAACATT 59.452 37.037 0.00 0.00 0.00 2.71
292 293 3.940852 TCAAATCCACCAACGATGATCTG 59.059 43.478 0.00 0.00 0.00 2.90
392 393 4.324267 ACCTATATAAAGACCGGCAATGC 58.676 43.478 0.00 0.00 0.00 3.56
398 399 1.252904 AAGACCGGCAATGCAAGCAT 61.253 50.000 7.79 0.86 38.46 3.79
417 418 3.844090 GAGCTCCGCCTCCTCCAC 61.844 72.222 0.87 0.00 0.00 4.02
461 462 1.710816 CCAGGAGGAGACTATGACCC 58.289 60.000 0.00 0.00 44.43 4.46
462 463 1.219213 CCAGGAGGAGACTATGACCCT 59.781 57.143 0.00 0.00 44.43 4.34
463 464 2.593026 CAGGAGGAGACTATGACCCTC 58.407 57.143 0.00 0.00 44.43 4.30
465 466 2.003937 GAGGAGACTATGACCCTCCC 57.996 60.000 0.00 0.00 45.77 4.30
466 467 1.218196 GAGGAGACTATGACCCTCCCA 59.782 57.143 0.00 0.00 45.77 4.37
468 469 1.218196 GGAGACTATGACCCTCCCAGA 59.782 57.143 0.00 0.00 40.35 3.86
469 470 2.359355 GGAGACTATGACCCTCCCAGAA 60.359 54.545 0.00 0.00 40.35 3.02
471 472 2.587777 AGACTATGACCCTCCCAGAAGA 59.412 50.000 0.00 0.00 0.00 2.87
472 473 2.962421 GACTATGACCCTCCCAGAAGAG 59.038 54.545 0.00 0.00 0.00 2.85
477 478 2.041928 CCTCCCAGAAGAGGCCCT 59.958 66.667 0.00 0.00 46.76 5.19
480 481 2.044551 CCCAGAAGAGGCCCTTGC 60.045 66.667 10.77 4.04 34.68 4.01
492 498 4.217210 CCTTGCCACCACCCCACA 62.217 66.667 0.00 0.00 0.00 4.17
527 533 3.273434 TGCTCTCCACAATACTTGCATC 58.727 45.455 0.00 0.00 0.00 3.91
529 535 3.525537 CTCTCCACAATACTTGCATCGT 58.474 45.455 0.00 0.00 0.00 3.73
530 536 3.521560 TCTCCACAATACTTGCATCGTC 58.478 45.455 0.00 0.00 0.00 4.20
531 537 3.056179 TCTCCACAATACTTGCATCGTCA 60.056 43.478 0.00 0.00 0.00 4.35
532 538 3.000041 TCCACAATACTTGCATCGTCAC 59.000 45.455 0.00 0.00 0.00 3.67
533 539 3.002791 CCACAATACTTGCATCGTCACT 58.997 45.455 0.00 0.00 0.00 3.41
534 540 3.436704 CCACAATACTTGCATCGTCACTT 59.563 43.478 0.00 0.00 0.00 3.16
535 541 4.436050 CCACAATACTTGCATCGTCACTTC 60.436 45.833 0.00 0.00 0.00 3.01
536 542 3.684788 ACAATACTTGCATCGTCACTTCC 59.315 43.478 0.00 0.00 0.00 3.46
537 543 3.895232 ATACTTGCATCGTCACTTCCT 57.105 42.857 0.00 0.00 0.00 3.36
538 544 2.550830 ACTTGCATCGTCACTTCCTT 57.449 45.000 0.00 0.00 0.00 3.36
539 545 3.678056 ACTTGCATCGTCACTTCCTTA 57.322 42.857 0.00 0.00 0.00 2.69
540 546 4.207891 ACTTGCATCGTCACTTCCTTAT 57.792 40.909 0.00 0.00 0.00 1.73
541 547 4.184629 ACTTGCATCGTCACTTCCTTATC 58.815 43.478 0.00 0.00 0.00 1.75
542 548 2.809446 TGCATCGTCACTTCCTTATCG 58.191 47.619 0.00 0.00 0.00 2.92
543 549 2.425668 TGCATCGTCACTTCCTTATCGA 59.574 45.455 0.00 0.00 0.00 3.59
544 550 3.119280 TGCATCGTCACTTCCTTATCGAA 60.119 43.478 0.00 0.00 0.00 3.71
545 551 3.487574 GCATCGTCACTTCCTTATCGAAG 59.512 47.826 0.00 0.00 44.07 3.79
546 552 3.146618 TCGTCACTTCCTTATCGAAGC 57.853 47.619 0.00 0.00 42.57 3.86
547 553 2.490509 TCGTCACTTCCTTATCGAAGCA 59.509 45.455 0.00 0.00 42.57 3.91
548 554 2.854777 CGTCACTTCCTTATCGAAGCAG 59.145 50.000 0.00 0.00 42.57 4.24
549 555 3.427638 CGTCACTTCCTTATCGAAGCAGA 60.428 47.826 0.00 0.00 42.57 4.26
550 556 4.109050 GTCACTTCCTTATCGAAGCAGAG 58.891 47.826 0.00 0.00 42.57 3.35
551 557 2.863137 CACTTCCTTATCGAAGCAGAGC 59.137 50.000 0.00 0.00 42.57 4.09
552 558 2.497675 ACTTCCTTATCGAAGCAGAGCA 59.502 45.455 0.00 0.00 42.57 4.26
553 559 3.055819 ACTTCCTTATCGAAGCAGAGCAA 60.056 43.478 0.00 0.00 42.57 3.91
554 560 3.610040 TCCTTATCGAAGCAGAGCAAA 57.390 42.857 0.00 0.00 0.00 3.68
555 561 4.142609 TCCTTATCGAAGCAGAGCAAAT 57.857 40.909 0.00 0.00 0.00 2.32
556 562 5.276461 TCCTTATCGAAGCAGAGCAAATA 57.724 39.130 0.00 0.00 0.00 1.40
557 563 5.858381 TCCTTATCGAAGCAGAGCAAATAT 58.142 37.500 0.00 0.00 0.00 1.28
558 564 6.291377 TCCTTATCGAAGCAGAGCAAATATT 58.709 36.000 0.00 0.00 0.00 1.28
559 565 7.441836 TCCTTATCGAAGCAGAGCAAATATTA 58.558 34.615 0.00 0.00 0.00 0.98
560 566 8.097038 TCCTTATCGAAGCAGAGCAAATATTAT 58.903 33.333 0.00 0.00 0.00 1.28
561 567 8.725148 CCTTATCGAAGCAGAGCAAATATTATT 58.275 33.333 0.00 0.00 0.00 1.40
584 590 3.408288 AATAGACAGTCGAGAAGTCGC 57.592 47.619 0.00 0.00 46.39 5.19
585 591 1.085091 TAGACAGTCGAGAAGTCGCC 58.915 55.000 0.00 0.00 46.39 5.54
586 592 1.512310 GACAGTCGAGAAGTCGCCG 60.512 63.158 0.00 0.00 46.39 6.46
587 593 2.185103 GACAGTCGAGAAGTCGCCGT 62.185 60.000 0.00 0.00 46.39 5.68
588 594 1.797933 CAGTCGAGAAGTCGCCGTG 60.798 63.158 0.00 0.00 46.39 4.94
589 595 3.173240 GTCGAGAAGTCGCCGTGC 61.173 66.667 0.00 0.00 46.39 5.34
600 606 4.337060 GCCGTGCGTTTTGGGGTC 62.337 66.667 0.00 0.00 0.00 4.46
601 607 2.593436 CCGTGCGTTTTGGGGTCT 60.593 61.111 0.00 0.00 0.00 3.85
602 608 1.301874 CCGTGCGTTTTGGGGTCTA 60.302 57.895 0.00 0.00 0.00 2.59
603 609 1.571215 CCGTGCGTTTTGGGGTCTAC 61.571 60.000 0.00 0.00 0.00 2.59
604 610 1.571215 CGTGCGTTTTGGGGTCTACC 61.571 60.000 0.00 0.00 39.11 3.18
615 621 3.903208 GGTCTACCCAACCATGCAT 57.097 52.632 0.00 0.00 36.75 3.96
616 622 1.392589 GGTCTACCCAACCATGCATG 58.607 55.000 20.19 20.19 36.75 4.06
617 623 0.740737 GTCTACCCAACCATGCATGC 59.259 55.000 21.69 11.82 0.00 4.06
618 624 0.625316 TCTACCCAACCATGCATGCT 59.375 50.000 21.69 4.67 0.00 3.79
619 625 1.843206 TCTACCCAACCATGCATGCTA 59.157 47.619 21.69 5.73 0.00 3.49
620 626 2.442878 TCTACCCAACCATGCATGCTAT 59.557 45.455 21.69 8.01 0.00 2.97
621 627 3.650461 TCTACCCAACCATGCATGCTATA 59.350 43.478 21.69 0.00 0.00 1.31
622 628 2.586425 ACCCAACCATGCATGCTATAC 58.414 47.619 21.69 0.00 0.00 1.47
623 629 1.536766 CCCAACCATGCATGCTATACG 59.463 52.381 21.69 8.92 0.00 3.06
624 630 2.221169 CCAACCATGCATGCTATACGT 58.779 47.619 21.69 9.59 0.00 3.57
625 631 3.398406 CCAACCATGCATGCTATACGTA 58.602 45.455 21.69 0.00 0.00 3.57
626 632 4.002982 CCAACCATGCATGCTATACGTAT 58.997 43.478 21.69 13.54 0.00 3.06
627 633 4.142838 CCAACCATGCATGCTATACGTATG 60.143 45.833 21.69 11.76 38.58 2.39
628 634 3.599343 ACCATGCATGCTATACGTATGG 58.401 45.455 21.69 22.66 39.49 2.74
629 635 2.352651 CCATGCATGCTATACGTATGGC 59.647 50.000 30.46 30.46 40.17 4.40
630 636 1.708822 TGCATGCTATACGTATGGCG 58.291 50.000 30.73 21.55 42.31 5.69
631 637 1.271102 TGCATGCTATACGTATGGCGA 59.729 47.619 30.73 22.41 42.31 5.54
632 638 2.094234 TGCATGCTATACGTATGGCGAT 60.094 45.455 30.73 23.33 42.31 4.58
633 639 2.930040 GCATGCTATACGTATGGCGATT 59.070 45.455 30.73 19.23 42.31 3.34
634 640 3.370978 GCATGCTATACGTATGGCGATTT 59.629 43.478 30.73 17.18 42.31 2.17
635 641 4.142902 GCATGCTATACGTATGGCGATTTT 60.143 41.667 30.73 15.16 42.31 1.82
636 642 5.550981 CATGCTATACGTATGGCGATTTTC 58.449 41.667 30.73 10.45 42.31 2.29
637 643 4.623002 TGCTATACGTATGGCGATTTTCA 58.377 39.130 30.73 14.57 42.31 2.69
638 644 5.234752 TGCTATACGTATGGCGATTTTCAT 58.765 37.500 30.73 1.99 42.31 2.57
639 645 5.699001 TGCTATACGTATGGCGATTTTCATT 59.301 36.000 30.73 0.60 42.31 2.57
640 646 6.015504 GCTATACGTATGGCGATTTTCATTG 58.984 40.000 25.25 0.00 44.77 2.82
641 647 3.691049 ACGTATGGCGATTTTCATTGG 57.309 42.857 0.00 0.00 44.77 3.16
642 648 3.275143 ACGTATGGCGATTTTCATTGGA 58.725 40.909 0.00 0.00 44.77 3.53
643 649 3.882888 ACGTATGGCGATTTTCATTGGAT 59.117 39.130 0.00 0.00 44.77 3.41
644 650 4.338118 ACGTATGGCGATTTTCATTGGATT 59.662 37.500 0.00 0.00 44.77 3.01
645 651 5.163561 ACGTATGGCGATTTTCATTGGATTT 60.164 36.000 0.00 0.00 44.77 2.17
646 652 5.748152 CGTATGGCGATTTTCATTGGATTTT 59.252 36.000 0.00 0.00 44.77 1.82
647 653 6.255453 CGTATGGCGATTTTCATTGGATTTTT 59.745 34.615 0.00 0.00 44.77 1.94
648 654 5.859521 TGGCGATTTTCATTGGATTTTTG 57.140 34.783 0.00 0.00 0.00 2.44
649 655 5.303971 TGGCGATTTTCATTGGATTTTTGT 58.696 33.333 0.00 0.00 0.00 2.83
650 656 6.459066 TGGCGATTTTCATTGGATTTTTGTA 58.541 32.000 0.00 0.00 0.00 2.41
651 657 6.367422 TGGCGATTTTCATTGGATTTTTGTAC 59.633 34.615 0.00 0.00 0.00 2.90
652 658 6.453659 GGCGATTTTCATTGGATTTTTGTACG 60.454 38.462 0.00 0.00 0.00 3.67
653 659 6.306837 GCGATTTTCATTGGATTTTTGTACGA 59.693 34.615 0.00 0.00 0.00 3.43
654 660 7.009174 GCGATTTTCATTGGATTTTTGTACGAT 59.991 33.333 0.00 0.00 0.00 3.73
655 661 8.313227 CGATTTTCATTGGATTTTTGTACGATG 58.687 33.333 0.00 0.00 0.00 3.84
656 662 9.139174 GATTTTCATTGGATTTTTGTACGATGT 57.861 29.630 0.00 0.00 0.00 3.06
657 663 8.879342 TTTTCATTGGATTTTTGTACGATGTT 57.121 26.923 0.00 0.00 0.00 2.71
658 664 7.865875 TTCATTGGATTTTTGTACGATGTTG 57.134 32.000 0.00 0.00 0.00 3.33
659 665 7.208225 TCATTGGATTTTTGTACGATGTTGA 57.792 32.000 0.00 0.00 0.00 3.18
660 666 7.652727 TCATTGGATTTTTGTACGATGTTGAA 58.347 30.769 0.00 0.00 0.00 2.69
661 667 7.807433 TCATTGGATTTTTGTACGATGTTGAAG 59.193 33.333 0.00 0.00 0.00 3.02
662 668 6.869315 TGGATTTTTGTACGATGTTGAAGA 57.131 33.333 0.00 0.00 0.00 2.87
663 669 7.447374 TGGATTTTTGTACGATGTTGAAGAT 57.553 32.000 0.00 0.00 0.00 2.40
664 670 7.526608 TGGATTTTTGTACGATGTTGAAGATC 58.473 34.615 0.00 0.00 0.00 2.75
665 671 6.682863 GGATTTTTGTACGATGTTGAAGATCG 59.317 38.462 20.98 20.98 46.55 3.69
666 672 6.772770 TTTTTGTACGATGTTGAAGATCGA 57.227 33.333 27.80 11.23 44.46 3.59
667 673 6.772770 TTTTGTACGATGTTGAAGATCGAA 57.227 33.333 27.80 11.58 44.46 3.71
668 674 5.756950 TTGTACGATGTTGAAGATCGAAC 57.243 39.130 27.80 9.46 44.46 3.95
669 675 4.171005 TGTACGATGTTGAAGATCGAACC 58.829 43.478 27.80 15.75 44.46 3.62
670 676 3.313012 ACGATGTTGAAGATCGAACCA 57.687 42.857 27.80 0.00 44.46 3.67
671 677 3.659786 ACGATGTTGAAGATCGAACCAA 58.340 40.909 27.80 0.00 44.46 3.67
672 678 4.062293 ACGATGTTGAAGATCGAACCAAA 58.938 39.130 27.80 0.00 44.46 3.28
673 679 4.513692 ACGATGTTGAAGATCGAACCAAAA 59.486 37.500 27.80 0.00 44.46 2.44
674 680 5.181245 ACGATGTTGAAGATCGAACCAAAAT 59.819 36.000 27.80 3.36 44.46 1.82
675 681 5.509272 CGATGTTGAAGATCGAACCAAAATG 59.491 40.000 18.40 0.00 44.46 2.32
676 682 4.545610 TGTTGAAGATCGAACCAAAATGC 58.454 39.130 0.00 0.00 0.00 3.56
677 683 4.037327 TGTTGAAGATCGAACCAAAATGCA 59.963 37.500 0.00 0.00 0.00 3.96
678 684 4.159377 TGAAGATCGAACCAAAATGCAC 57.841 40.909 0.00 0.00 0.00 4.57
679 685 3.057596 TGAAGATCGAACCAAAATGCACC 60.058 43.478 0.00 0.00 0.00 5.01
680 686 2.513753 AGATCGAACCAAAATGCACCA 58.486 42.857 0.00 0.00 0.00 4.17
681 687 2.228822 AGATCGAACCAAAATGCACCAC 59.771 45.455 0.00 0.00 0.00 4.16
682 688 0.309302 TCGAACCAAAATGCACCACG 59.691 50.000 0.00 0.00 0.00 4.94
683 689 0.030101 CGAACCAAAATGCACCACGT 59.970 50.000 0.00 0.00 0.00 4.49
684 690 1.766069 GAACCAAAATGCACCACGTC 58.234 50.000 0.00 0.00 0.00 4.34
685 691 0.030101 AACCAAAATGCACCACGTCG 59.970 50.000 0.00 0.00 0.00 5.12
686 692 1.098712 ACCAAAATGCACCACGTCGT 61.099 50.000 0.00 0.00 0.00 4.34
687 693 0.030101 CCAAAATGCACCACGTCGTT 59.970 50.000 0.00 0.00 0.00 3.85
688 694 1.119635 CAAAATGCACCACGTCGTTG 58.880 50.000 0.00 0.00 0.00 4.10
689 695 0.030101 AAAATGCACCACGTCGTTGG 59.970 50.000 10.96 10.96 43.04 3.77
690 696 0.816018 AAATGCACCACGTCGTTGGA 60.816 50.000 17.22 7.20 39.24 3.53
691 697 0.605319 AATGCACCACGTCGTTGGAT 60.605 50.000 17.22 9.04 39.24 3.41
692 698 0.605319 ATGCACCACGTCGTTGGATT 60.605 50.000 17.22 0.00 39.24 3.01
693 699 1.206578 GCACCACGTCGTTGGATTG 59.793 57.895 17.22 9.32 39.24 2.67
694 700 1.206578 CACCACGTCGTTGGATTGC 59.793 57.895 17.22 0.00 39.24 3.56
695 701 1.227704 ACCACGTCGTTGGATTGCA 60.228 52.632 17.22 0.00 39.24 4.08
696 702 0.816018 ACCACGTCGTTGGATTGCAA 60.816 50.000 17.22 0.00 39.24 4.08
697 703 0.385473 CCACGTCGTTGGATTGCAAC 60.385 55.000 10.69 10.69 39.24 4.17
701 707 4.415490 CGTTGGATTGCAACGTCG 57.585 55.556 28.41 9.61 46.92 5.12
702 708 1.567537 CGTTGGATTGCAACGTCGT 59.432 52.632 28.41 0.00 46.92 4.34
703 709 0.785378 CGTTGGATTGCAACGTCGTA 59.215 50.000 28.41 0.00 46.92 3.43
704 710 1.461237 CGTTGGATTGCAACGTCGTAC 60.461 52.381 28.41 0.14 46.92 3.67
705 711 1.136169 GTTGGATTGCAACGTCGTACC 60.136 52.381 0.00 0.00 0.00 3.34
706 712 1.009903 TGGATTGCAACGTCGTACCG 61.010 55.000 0.00 0.00 0.00 4.02
707 713 0.733566 GGATTGCAACGTCGTACCGA 60.734 55.000 0.00 0.00 0.00 4.69
708 714 1.062258 GATTGCAACGTCGTACCGAA 58.938 50.000 0.00 0.00 37.72 4.30
709 715 1.456544 GATTGCAACGTCGTACCGAAA 59.543 47.619 0.00 0.00 37.72 3.46
710 716 1.500108 TTGCAACGTCGTACCGAAAT 58.500 45.000 0.00 0.00 37.72 2.17
711 717 1.500108 TGCAACGTCGTACCGAAATT 58.500 45.000 0.00 0.00 37.72 1.82
712 718 1.192757 TGCAACGTCGTACCGAAATTG 59.807 47.619 0.00 6.71 37.72 2.32
713 719 1.462869 GCAACGTCGTACCGAAATTGG 60.463 52.381 0.00 0.00 37.72 3.16
714 720 2.060284 CAACGTCGTACCGAAATTGGA 58.940 47.619 0.00 0.00 37.72 3.53
715 721 1.701704 ACGTCGTACCGAAATTGGAC 58.298 50.000 0.00 0.00 37.72 4.02
716 722 1.000385 ACGTCGTACCGAAATTGGACA 60.000 47.619 0.00 0.00 37.72 4.02
717 723 2.060284 CGTCGTACCGAAATTGGACAA 58.940 47.619 0.00 0.00 37.72 3.18
718 724 2.091588 CGTCGTACCGAAATTGGACAAG 59.908 50.000 0.00 0.00 37.72 3.16
719 725 3.319755 GTCGTACCGAAATTGGACAAGA 58.680 45.455 0.00 0.00 37.72 3.02
720 726 3.367025 GTCGTACCGAAATTGGACAAGAG 59.633 47.826 0.00 0.00 37.72 2.85
721 727 2.671396 CGTACCGAAATTGGACAAGAGG 59.329 50.000 0.00 0.00 0.00 3.69
722 728 2.951229 ACCGAAATTGGACAAGAGGT 57.049 45.000 0.00 0.00 0.00 3.85
723 729 2.504367 ACCGAAATTGGACAAGAGGTG 58.496 47.619 0.00 0.00 0.00 4.00
724 730 2.158667 ACCGAAATTGGACAAGAGGTGT 60.159 45.455 0.00 0.00 45.74 4.16
725 731 2.884639 CCGAAATTGGACAAGAGGTGTT 59.115 45.455 0.00 0.00 41.96 3.32
726 732 3.317993 CCGAAATTGGACAAGAGGTGTTT 59.682 43.478 0.00 0.00 41.96 2.83
727 733 4.290155 CGAAATTGGACAAGAGGTGTTTG 58.710 43.478 0.00 0.00 41.96 2.93
728 734 4.202010 CGAAATTGGACAAGAGGTGTTTGT 60.202 41.667 0.00 0.00 41.96 2.83
729 735 5.008217 CGAAATTGGACAAGAGGTGTTTGTA 59.992 40.000 0.00 0.00 41.96 2.41
730 736 6.391227 AAATTGGACAAGAGGTGTTTGTAG 57.609 37.500 0.00 0.00 41.96 2.74
731 737 4.497291 TTGGACAAGAGGTGTTTGTAGT 57.503 40.909 0.00 0.00 41.96 2.73
732 738 4.497291 TGGACAAGAGGTGTTTGTAGTT 57.503 40.909 0.00 0.00 41.96 2.24
733 739 4.850680 TGGACAAGAGGTGTTTGTAGTTT 58.149 39.130 0.00 0.00 41.96 2.66
734 740 4.638421 TGGACAAGAGGTGTTTGTAGTTTG 59.362 41.667 0.00 0.00 41.96 2.93
735 741 4.036380 GGACAAGAGGTGTTTGTAGTTTGG 59.964 45.833 0.00 0.00 41.96 3.28
736 742 4.595986 ACAAGAGGTGTTTGTAGTTTGGT 58.404 39.130 0.00 0.00 37.01 3.67
737 743 5.014202 ACAAGAGGTGTTTGTAGTTTGGTT 58.986 37.500 0.00 0.00 37.01 3.67
738 744 5.124936 ACAAGAGGTGTTTGTAGTTTGGTTC 59.875 40.000 0.00 0.00 37.01 3.62
739 745 5.112129 AGAGGTGTTTGTAGTTTGGTTCT 57.888 39.130 0.00 0.00 0.00 3.01
740 746 5.123936 AGAGGTGTTTGTAGTTTGGTTCTC 58.876 41.667 0.00 0.00 0.00 2.87
741 747 3.875134 AGGTGTTTGTAGTTTGGTTCTCG 59.125 43.478 0.00 0.00 0.00 4.04
742 748 3.624410 GGTGTTTGTAGTTTGGTTCTCGT 59.376 43.478 0.00 0.00 0.00 4.18
743 749 4.095334 GGTGTTTGTAGTTTGGTTCTCGTT 59.905 41.667 0.00 0.00 0.00 3.85
744 750 5.294060 GGTGTTTGTAGTTTGGTTCTCGTTA 59.706 40.000 0.00 0.00 0.00 3.18
745 751 6.187480 GTGTTTGTAGTTTGGTTCTCGTTAC 58.813 40.000 0.00 0.00 0.00 2.50
746 752 5.294060 TGTTTGTAGTTTGGTTCTCGTTACC 59.706 40.000 0.00 0.00 36.17 2.85
747 753 4.942761 TGTAGTTTGGTTCTCGTTACCT 57.057 40.909 0.00 0.00 36.60 3.08
748 754 5.280654 TGTAGTTTGGTTCTCGTTACCTT 57.719 39.130 0.00 0.00 36.60 3.50
749 755 5.291971 TGTAGTTTGGTTCTCGTTACCTTC 58.708 41.667 0.00 0.00 36.60 3.46
750 756 3.736720 AGTTTGGTTCTCGTTACCTTCC 58.263 45.455 0.00 0.00 36.60 3.46
751 757 2.443887 TTGGTTCTCGTTACCTTCCG 57.556 50.000 0.00 0.00 36.60 4.30
752 758 0.037975 TGGTTCTCGTTACCTTCCGC 60.038 55.000 0.00 0.00 36.60 5.54
753 759 0.037975 GGTTCTCGTTACCTTCCGCA 60.038 55.000 0.00 0.00 32.75 5.69
754 760 1.347320 GTTCTCGTTACCTTCCGCAG 58.653 55.000 0.00 0.00 0.00 5.18
770 776 3.268013 CGCAGGTTTCGAGAAAAATGT 57.732 42.857 0.00 0.00 31.33 2.71
771 777 2.973224 CGCAGGTTTCGAGAAAAATGTG 59.027 45.455 0.00 5.41 31.33 3.21
772 778 3.548014 CGCAGGTTTCGAGAAAAATGTGT 60.548 43.478 0.00 0.00 31.33 3.72
773 779 3.975035 GCAGGTTTCGAGAAAAATGTGTC 59.025 43.478 0.00 0.00 31.33 3.67
774 780 4.211389 CAGGTTTCGAGAAAAATGTGTCG 58.789 43.478 0.00 0.00 31.33 4.35
775 781 3.875134 AGGTTTCGAGAAAAATGTGTCGT 59.125 39.130 0.00 0.00 34.07 4.34
776 782 5.050634 CAGGTTTCGAGAAAAATGTGTCGTA 60.051 40.000 0.00 0.00 34.07 3.43
777 783 5.699458 AGGTTTCGAGAAAAATGTGTCGTAT 59.301 36.000 0.00 0.00 34.07 3.06
778 784 5.788531 GGTTTCGAGAAAAATGTGTCGTATG 59.211 40.000 0.00 0.00 34.07 2.39
779 785 6.360329 GTTTCGAGAAAAATGTGTCGTATGT 58.640 36.000 0.00 0.00 34.07 2.29
780 786 7.359431 GGTTTCGAGAAAAATGTGTCGTATGTA 60.359 37.037 0.00 0.00 34.07 2.29
781 787 6.864560 TCGAGAAAAATGTGTCGTATGTAG 57.135 37.500 0.00 0.00 34.07 2.74
782 788 5.803461 TCGAGAAAAATGTGTCGTATGTAGG 59.197 40.000 0.00 0.00 34.07 3.18
783 789 5.005394 CGAGAAAAATGTGTCGTATGTAGGG 59.995 44.000 0.00 0.00 0.00 3.53
784 790 5.801380 AGAAAAATGTGTCGTATGTAGGGT 58.199 37.500 0.00 0.00 0.00 4.34
785 791 5.642063 AGAAAAATGTGTCGTATGTAGGGTG 59.358 40.000 0.00 0.00 0.00 4.61
786 792 4.546829 AAATGTGTCGTATGTAGGGTGT 57.453 40.909 0.00 0.00 0.00 4.16
787 793 3.520290 ATGTGTCGTATGTAGGGTGTG 57.480 47.619 0.00 0.00 0.00 3.82
788 794 1.546923 TGTGTCGTATGTAGGGTGTGG 59.453 52.381 0.00 0.00 0.00 4.17
789 795 1.547372 GTGTCGTATGTAGGGTGTGGT 59.453 52.381 0.00 0.00 0.00 4.16
790 796 2.028748 GTGTCGTATGTAGGGTGTGGTT 60.029 50.000 0.00 0.00 0.00 3.67
791 797 3.193267 GTGTCGTATGTAGGGTGTGGTTA 59.807 47.826 0.00 0.00 0.00 2.85
792 798 4.025360 TGTCGTATGTAGGGTGTGGTTAT 58.975 43.478 0.00 0.00 0.00 1.89
793 799 4.142116 TGTCGTATGTAGGGTGTGGTTATG 60.142 45.833 0.00 0.00 0.00 1.90
794 800 3.385433 TCGTATGTAGGGTGTGGTTATGG 59.615 47.826 0.00 0.00 0.00 2.74
795 801 3.133362 CGTATGTAGGGTGTGGTTATGGT 59.867 47.826 0.00 0.00 0.00 3.55
796 802 4.383335 CGTATGTAGGGTGTGGTTATGGTT 60.383 45.833 0.00 0.00 0.00 3.67
797 803 4.668138 ATGTAGGGTGTGGTTATGGTTT 57.332 40.909 0.00 0.00 0.00 3.27
798 804 5.782677 ATGTAGGGTGTGGTTATGGTTTA 57.217 39.130 0.00 0.00 0.00 2.01
799 805 5.579753 TGTAGGGTGTGGTTATGGTTTAA 57.420 39.130 0.00 0.00 0.00 1.52
800 806 6.142259 TGTAGGGTGTGGTTATGGTTTAAT 57.858 37.500 0.00 0.00 0.00 1.40
801 807 5.946972 TGTAGGGTGTGGTTATGGTTTAATG 59.053 40.000 0.00 0.00 0.00 1.90
802 808 5.263872 AGGGTGTGGTTATGGTTTAATGA 57.736 39.130 0.00 0.00 0.00 2.57
803 809 5.646215 AGGGTGTGGTTATGGTTTAATGAA 58.354 37.500 0.00 0.00 0.00 2.57
804 810 5.479027 AGGGTGTGGTTATGGTTTAATGAAC 59.521 40.000 0.00 0.00 37.53 3.18
814 820 2.577450 GTTTAATGAACCACGCGAACC 58.423 47.619 15.93 0.00 31.85 3.62
815 821 1.880271 TTAATGAACCACGCGAACCA 58.120 45.000 15.93 3.31 0.00 3.67
816 822 1.149987 TAATGAACCACGCGAACCAC 58.850 50.000 15.93 1.39 0.00 4.16
817 823 1.837538 AATGAACCACGCGAACCACG 61.838 55.000 15.93 0.00 45.66 4.94
831 837 4.459331 CACGCGGTGGCCATTTCG 62.459 66.667 9.72 15.13 35.02 3.46
834 840 4.049640 GCGGTGGCCATTTCGCAA 62.050 61.111 31.69 0.00 46.33 4.85
835 841 2.647875 CGGTGGCCATTTCGCAAA 59.352 55.556 9.72 0.00 0.00 3.68
836 842 1.006805 CGGTGGCCATTTCGCAAAA 60.007 52.632 9.72 0.00 0.00 2.44
837 843 0.598680 CGGTGGCCATTTCGCAAAAA 60.599 50.000 9.72 0.00 0.00 1.94
838 844 1.147473 GGTGGCCATTTCGCAAAAAG 58.853 50.000 9.72 0.00 0.00 2.27
839 845 1.540146 GGTGGCCATTTCGCAAAAAGT 60.540 47.619 9.72 0.00 0.00 2.66
840 846 2.288518 GGTGGCCATTTCGCAAAAAGTA 60.289 45.455 9.72 0.00 0.00 2.24
841 847 3.385577 GTGGCCATTTCGCAAAAAGTAA 58.614 40.909 9.72 0.00 0.00 2.24
842 848 3.804873 GTGGCCATTTCGCAAAAAGTAAA 59.195 39.130 9.72 0.00 0.00 2.01
843 849 4.271291 GTGGCCATTTCGCAAAAAGTAAAA 59.729 37.500 9.72 0.00 0.00 1.52
844 850 4.876107 TGGCCATTTCGCAAAAAGTAAAAA 59.124 33.333 0.00 0.00 0.00 1.94
874 880 2.738135 GAGATCTTAACTCGCTCCTGC 58.262 52.381 0.00 0.00 0.00 4.85
875 881 2.360801 GAGATCTTAACTCGCTCCTGCT 59.639 50.000 0.00 0.00 36.97 4.24
876 882 2.360801 AGATCTTAACTCGCTCCTGCTC 59.639 50.000 0.00 0.00 36.97 4.26
877 883 1.840737 TCTTAACTCGCTCCTGCTCT 58.159 50.000 0.00 0.00 36.97 4.09
878 884 1.746220 TCTTAACTCGCTCCTGCTCTC 59.254 52.381 0.00 0.00 36.97 3.20
879 885 0.818296 TTAACTCGCTCCTGCTCTCC 59.182 55.000 0.00 0.00 36.97 3.71
880 886 0.323451 TAACTCGCTCCTGCTCTCCA 60.323 55.000 0.00 0.00 36.97 3.86
881 887 0.975040 AACTCGCTCCTGCTCTCCAT 60.975 55.000 0.00 0.00 36.97 3.41
882 888 0.106469 ACTCGCTCCTGCTCTCCATA 60.106 55.000 0.00 0.00 36.97 2.74
883 889 1.255882 CTCGCTCCTGCTCTCCATAT 58.744 55.000 0.00 0.00 36.97 1.78
884 890 2.224892 ACTCGCTCCTGCTCTCCATATA 60.225 50.000 0.00 0.00 36.97 0.86
885 891 3.023119 CTCGCTCCTGCTCTCCATATAT 58.977 50.000 0.00 0.00 36.97 0.86
886 892 4.203226 CTCGCTCCTGCTCTCCATATATA 58.797 47.826 0.00 0.00 36.97 0.86
887 893 4.797743 TCGCTCCTGCTCTCCATATATAT 58.202 43.478 0.00 0.00 36.97 0.86
888 894 5.941788 TCGCTCCTGCTCTCCATATATATA 58.058 41.667 0.00 0.00 36.97 0.86
889 895 6.547402 TCGCTCCTGCTCTCCATATATATAT 58.453 40.000 0.00 0.00 36.97 0.86
890 896 7.690256 TCGCTCCTGCTCTCCATATATATATA 58.310 38.462 4.90 4.92 36.97 0.86
891 897 8.332487 TCGCTCCTGCTCTCCATATATATATAT 58.668 37.037 9.12 9.12 36.97 0.86
892 898 8.620416 CGCTCCTGCTCTCCATATATATATATC 58.380 40.741 11.62 2.14 36.97 1.63
893 899 8.912988 GCTCCTGCTCTCCATATATATATATCC 58.087 40.741 11.62 0.00 36.03 2.59
894 900 9.420118 CTCCTGCTCTCCATATATATATATCCC 57.580 40.741 11.62 0.27 0.00 3.85
895 901 8.915438 TCCTGCTCTCCATATATATATATCCCA 58.085 37.037 11.62 0.00 0.00 4.37
896 902 8.976353 CCTGCTCTCCATATATATATATCCCAC 58.024 40.741 11.62 2.50 0.00 4.61
897 903 9.539194 CTGCTCTCCATATATATATATCCCACA 57.461 37.037 11.62 6.10 0.00 4.17
898 904 9.314133 TGCTCTCCATATATATATATCCCACAC 57.686 37.037 11.62 3.36 0.00 3.82
899 905 8.754080 GCTCTCCATATATATATATCCCACACC 58.246 40.741 11.62 0.00 0.00 4.16
900 906 9.261035 CTCTCCATATATATATATCCCACACCC 57.739 40.741 11.62 0.00 0.00 4.61
901 907 8.184249 TCTCCATATATATATATCCCACACCCC 58.816 40.741 11.62 0.00 0.00 4.95
902 908 6.957606 TCCATATATATATATCCCACACCCCG 59.042 42.308 11.62 0.00 0.00 5.73
903 909 6.351881 CCATATATATATATCCCACACCCCGC 60.352 46.154 11.62 0.00 0.00 6.13
904 910 2.328992 TATATATCCCACACCCCGCA 57.671 50.000 0.00 0.00 0.00 5.69
905 911 0.984230 ATATATCCCACACCCCGCAG 59.016 55.000 0.00 0.00 0.00 5.18
906 912 1.764571 TATATCCCACACCCCGCAGC 61.765 60.000 0.00 0.00 0.00 5.25
907 913 9.997937 TATATATATATCCCACACCCCGCAGCA 62.998 44.444 8.55 0.00 0.00 4.41
915 921 4.028490 CCCCGCAGCACACCCTTA 62.028 66.667 0.00 0.00 0.00 2.69
916 922 2.272146 CCCGCAGCACACCCTTAT 59.728 61.111 0.00 0.00 0.00 1.73
917 923 1.819632 CCCGCAGCACACCCTTATC 60.820 63.158 0.00 0.00 0.00 1.75
918 924 2.173669 CCGCAGCACACCCTTATCG 61.174 63.158 0.00 0.00 0.00 2.92
919 925 1.153647 CGCAGCACACCCTTATCGA 60.154 57.895 0.00 0.00 0.00 3.59
920 926 0.739462 CGCAGCACACCCTTATCGAA 60.739 55.000 0.00 0.00 0.00 3.71
921 927 1.448985 GCAGCACACCCTTATCGAAA 58.551 50.000 0.00 0.00 0.00 3.46
922 928 1.810151 GCAGCACACCCTTATCGAAAA 59.190 47.619 0.00 0.00 0.00 2.29
923 929 2.227865 GCAGCACACCCTTATCGAAAAA 59.772 45.455 0.00 0.00 0.00 1.94
946 952 3.093278 GCATACAGCACGCAGTCC 58.907 61.111 0.00 0.00 41.61 3.85
947 953 1.741401 GCATACAGCACGCAGTCCA 60.741 57.895 0.00 0.00 41.61 4.02
948 954 1.970917 GCATACAGCACGCAGTCCAC 61.971 60.000 0.00 0.00 41.61 4.02
949 955 0.670239 CATACAGCACGCAGTCCACA 60.670 55.000 0.00 0.00 41.61 4.17
950 956 0.670546 ATACAGCACGCAGTCCACAC 60.671 55.000 0.00 0.00 41.61 3.82
951 957 2.022240 TACAGCACGCAGTCCACACA 62.022 55.000 0.00 0.00 41.61 3.72
952 958 2.588877 AGCACGCAGTCCACACAC 60.589 61.111 0.00 0.00 41.61 3.82
953 959 2.894879 GCACGCAGTCCACACACA 60.895 61.111 0.00 0.00 41.61 3.72
954 960 3.014036 CACGCAGTCCACACACAC 58.986 61.111 0.00 0.00 41.61 3.82
955 961 2.584970 ACGCAGTCCACACACACG 60.585 61.111 0.00 0.00 29.74 4.49
956 962 2.279186 CGCAGTCCACACACACGA 60.279 61.111 0.00 0.00 0.00 4.35
957 963 1.664649 CGCAGTCCACACACACGAT 60.665 57.895 0.00 0.00 0.00 3.73
958 964 1.617755 CGCAGTCCACACACACGATC 61.618 60.000 0.00 0.00 0.00 3.69
959 965 1.617755 GCAGTCCACACACACGATCG 61.618 60.000 14.88 14.88 0.00 3.69
960 966 0.039527 CAGTCCACACACACGATCGA 60.040 55.000 24.34 0.00 0.00 3.59
961 967 0.241213 AGTCCACACACACGATCGAG 59.759 55.000 24.34 17.42 0.00 4.04
962 968 0.240145 GTCCACACACACGATCGAGA 59.760 55.000 24.34 2.25 0.00 4.04
963 969 0.240145 TCCACACACACGATCGAGAC 59.760 55.000 24.34 0.00 0.00 3.36
964 970 0.039527 CCACACACACGATCGAGACA 60.040 55.000 24.34 0.00 0.00 3.41
965 971 1.601914 CCACACACACGATCGAGACAA 60.602 52.381 24.34 0.00 0.00 3.18
966 972 2.124122 CACACACACGATCGAGACAAA 58.876 47.619 24.34 0.00 0.00 2.83
967 973 2.097396 CACACACACGATCGAGACAAAC 60.097 50.000 24.34 0.00 0.00 2.93
968 974 2.223735 ACACACACGATCGAGACAAACT 60.224 45.455 24.34 0.00 0.00 2.66
969 975 2.405357 CACACACGATCGAGACAAACTC 59.595 50.000 24.34 0.00 41.79 3.01
970 976 2.034179 ACACACGATCGAGACAAACTCA 59.966 45.455 24.34 0.00 45.14 3.41
971 977 2.405357 CACACGATCGAGACAAACTCAC 59.595 50.000 24.34 0.00 45.14 3.51
972 978 1.644295 CACGATCGAGACAAACTCACG 59.356 52.381 24.34 0.00 45.14 4.35
973 979 1.266175 ACGATCGAGACAAACTCACGT 59.734 47.619 24.34 0.00 45.14 4.49
974 980 1.905687 CGATCGAGACAAACTCACGTC 59.094 52.381 10.26 0.00 45.14 4.34
981 987 0.532862 ACAAACTCACGTCCTGGCTG 60.533 55.000 0.00 0.00 0.00 4.85
999 1010 2.817423 GCTGCTCCGGCGATCAAAG 61.817 63.158 9.30 0.00 42.25 2.77
1053 2848 0.179045 GCATGGTCAAGCCGGAGTAT 60.179 55.000 5.05 0.00 41.21 2.12
1152 2947 1.381327 CCAGAAGGGCGTCCTCCTA 60.381 63.158 10.20 0.00 44.07 2.94
1162 2957 1.265454 CGTCCTCCTACCCAAGCCTT 61.265 60.000 0.00 0.00 0.00 4.35
1185 2983 2.102357 AGTATGCACGCCGTCGAG 59.898 61.111 0.00 0.00 39.41 4.04
1227 3025 3.878667 GCCCTGGGCCGCTTCTAT 61.879 66.667 27.77 0.00 44.06 1.98
1611 3437 4.245660 TCAGCCGAACTAAGAAAGACATG 58.754 43.478 0.00 0.00 0.00 3.21
1618 3444 3.326747 ACTAAGAAAGACATGTCCACGC 58.673 45.455 22.21 9.53 0.00 5.34
1635 3467 2.478890 GCTGCCGCTACTCCGAGTA 61.479 63.158 8.01 8.01 0.00 2.59
1654 3486 1.046472 ACAGAGGTGGTTCCACGACA 61.046 55.000 14.63 0.00 37.79 4.35
1725 3560 2.802792 CGGTTCGAGTATCCGCCA 59.197 61.111 7.29 0.00 37.90 5.69
1778 3613 5.163499 CGGAGAGTATAAAGAAGCTGAAGGT 60.163 44.000 0.00 0.00 0.00 3.50
1781 3616 7.418483 GGAGAGTATAAAGAAGCTGAAGGTGAT 60.418 40.741 0.00 0.00 0.00 3.06
2118 3981 2.531685 TGGTCCCAGAACCCCAGG 60.532 66.667 0.00 0.00 38.65 4.45
2150 4019 2.256158 CGACTACGGCACCGAACA 59.744 61.111 17.40 0.00 42.83 3.18
2153 4022 1.079405 ACTACGGCACCGAACATGG 60.079 57.895 17.40 0.00 42.83 3.66
2436 4307 1.741401 TGCATCGGAGGAGTTTGCG 60.741 57.895 0.00 0.00 36.11 4.85
2439 4310 3.682292 ATCGGAGGAGTTTGCGGGC 62.682 63.158 0.00 0.00 32.39 6.13
2457 4328 0.941463 GCGGAGGCATGTATCAGTCG 60.941 60.000 0.00 0.00 39.62 4.18
2470 4341 1.733041 CAGTCGTACAGTGGTGCCG 60.733 63.158 0.00 0.00 0.00 5.69
2476 4347 0.739813 GTACAGTGGTGCCGGTGATC 60.740 60.000 1.90 0.00 0.00 2.92
2525 4398 5.714806 CCCAGTACCAGAACCAAATAATGTT 59.285 40.000 0.00 0.00 0.00 2.71
2528 4401 4.535526 ACCAGAACCAAATAATGTTGCC 57.464 40.909 0.00 0.00 0.00 4.52
2530 4403 3.515104 CCAGAACCAAATAATGTTGCCCT 59.485 43.478 0.00 0.00 0.00 5.19
2541 4414 6.763715 ATAATGTTGCCCTAGATGGAAGTA 57.236 37.500 0.00 0.00 38.35 2.24
2545 4418 4.593206 TGTTGCCCTAGATGGAAGTATAGG 59.407 45.833 0.00 0.00 38.35 2.57
2548 4421 5.665701 TGCCCTAGATGGAAGTATAGGAAT 58.334 41.667 0.00 0.00 35.53 3.01
2552 4425 7.363968 GCCCTAGATGGAAGTATAGGAATGTAC 60.364 44.444 0.00 0.00 35.53 2.90
2553 4426 7.124448 CCCTAGATGGAAGTATAGGAATGTACC 59.876 44.444 0.00 0.00 35.53 3.34
2555 4428 7.304497 AGATGGAAGTATAGGAATGTACCAC 57.696 40.000 0.00 0.00 0.00 4.16
2556 4429 5.881923 TGGAAGTATAGGAATGTACCACC 57.118 43.478 0.00 0.00 0.00 4.61
2557 4430 4.342951 TGGAAGTATAGGAATGTACCACCG 59.657 45.833 0.00 0.00 0.00 4.94
2558 4431 4.343239 GGAAGTATAGGAATGTACCACCGT 59.657 45.833 0.00 0.00 0.00 4.83
2559 4432 5.536161 GGAAGTATAGGAATGTACCACCGTA 59.464 44.000 0.00 0.00 0.00 4.02
2635 4542 6.478673 TGATGTATTATTGGTGCTGTACTTCG 59.521 38.462 0.00 0.00 0.00 3.79
2697 4616 2.121116 AATGACCGACATCGATCGTC 57.879 50.000 15.94 14.33 43.02 4.20
2699 4618 0.377203 TGACCGACATCGATCGTCTG 59.623 55.000 15.94 15.71 43.02 3.51
2711 4630 3.697542 TCGATCGTCTGGTATTTTCTCCA 59.302 43.478 15.94 0.00 0.00 3.86
2739 4658 4.637534 AGATTTTGGATCAATGACAGACGG 59.362 41.667 0.00 0.00 0.00 4.79
2740 4659 2.401583 TTGGATCAATGACAGACGGG 57.598 50.000 0.00 0.00 0.00 5.28
2741 4660 1.567357 TGGATCAATGACAGACGGGA 58.433 50.000 0.00 0.00 0.00 5.14
2742 4661 1.207089 TGGATCAATGACAGACGGGAC 59.793 52.381 0.00 0.00 0.00 4.46
2755 4674 2.045926 GGGACGAGGCTTGCACAT 60.046 61.111 0.37 0.00 0.00 3.21
2756 4675 2.401766 GGGACGAGGCTTGCACATG 61.402 63.158 0.37 0.00 0.00 3.21
2757 4676 2.482374 GACGAGGCTTGCACATGC 59.518 61.111 0.37 0.00 42.50 4.06
2837 4783 1.888736 GTGGACCTGGTCGACCTAC 59.111 63.158 33.39 16.47 35.72 3.18
2956 4931 6.096001 AGTGGCAGCCTTTTCATTCTTTATAG 59.904 38.462 14.15 0.00 0.00 1.31
2957 4932 5.951747 TGGCAGCCTTTTCATTCTTTATAGT 59.048 36.000 14.15 0.00 0.00 2.12
2958 4933 7.067008 GTGGCAGCCTTTTCATTCTTTATAGTA 59.933 37.037 14.15 0.00 0.00 1.82
2959 4934 7.779798 TGGCAGCCTTTTCATTCTTTATAGTAT 59.220 33.333 14.15 0.00 0.00 2.12
2960 4935 9.284968 GGCAGCCTTTTCATTCTTTATAGTATA 57.715 33.333 3.29 0.00 0.00 1.47
3087 5072 7.322461 TGTCGTATCATGTTTCAAAAACATTCG 59.678 33.333 13.80 14.59 38.69 3.34
3205 5193 4.454504 TGTCTTGAAAAAGTTCGCCTATCC 59.545 41.667 0.00 0.00 36.46 2.59
3285 5277 6.517605 CCAAAACCGAAAAGGGAGAAATAAA 58.482 36.000 0.00 0.00 46.96 1.40
3286 5278 6.987404 CCAAAACCGAAAAGGGAGAAATAAAA 59.013 34.615 0.00 0.00 46.96 1.52
3287 5279 7.496263 CCAAAACCGAAAAGGGAGAAATAAAAA 59.504 33.333 0.00 0.00 46.96 1.94
3356 5350 5.638596 AAAGGAAACAAAACAGTTCGTCT 57.361 34.783 0.00 0.00 0.00 4.18
3357 5351 6.746745 AAAGGAAACAAAACAGTTCGTCTA 57.253 33.333 0.00 0.00 0.00 2.59
3365 5359 6.053005 ACAAAACAGTTCGTCTATGGAGAAA 58.947 36.000 0.00 0.00 31.96 2.52
3371 5365 6.127310 ACAGTTCGTCTATGGAGAAAAGCTAT 60.127 38.462 0.00 0.00 31.96 2.97
3398 5392 4.327680 ACATTCTTGAAGTTAGGTCTGCC 58.672 43.478 0.00 0.00 0.00 4.85
3399 5393 2.743636 TCTTGAAGTTAGGTCTGCCG 57.256 50.000 0.00 0.00 40.50 5.69
3402 5396 0.242825 TGAAGTTAGGTCTGCCGACG 59.757 55.000 1.95 0.00 41.16 5.12
3404 5398 1.812686 AAGTTAGGTCTGCCGACGCA 61.813 55.000 1.95 0.00 44.78 5.24
3411 5405 1.076332 GTCTGCCGACGCAAACTATT 58.924 50.000 0.00 0.00 46.66 1.73
3449 5443 1.617018 CCTCTCTTGCGGATCCACCA 61.617 60.000 13.41 5.20 38.90 4.17
3488 5482 2.190841 GTGGGACCCCGTTGTTGTG 61.191 63.158 8.45 0.00 39.42 3.33
3500 5494 2.159787 CGTTGTTGTGCATCAGAGCTAC 60.160 50.000 0.00 0.00 34.99 3.58
3502 5496 1.625315 TGTTGTGCATCAGAGCTACCT 59.375 47.619 0.00 0.00 34.99 3.08
3525 5519 4.294347 AGGGTTTTCCTTTTGGTCATCAA 58.706 39.130 0.00 0.00 45.47 2.57
3531 5525 8.004611 GGTTTTCCTTTTGGTCATCAATACCAG 61.005 40.741 0.00 0.00 41.44 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 4.555262 CCTTGCGTGGTGAATTTTGTAAT 58.445 39.130 0.00 0.00 0.00 1.89
122 123 0.872388 GTTAGTGGTGTTCCGCCTTG 59.128 55.000 0.00 0.00 44.61 3.61
124 125 1.636148 TAGTTAGTGGTGTTCCGCCT 58.364 50.000 0.00 0.00 44.61 5.52
181 182 2.559668 CAATGTGGTGGCCCATATGATC 59.440 50.000 3.65 0.00 41.31 2.92
248 249 4.846779 AGAAGGAAGCGATGAGTATCTC 57.153 45.455 0.00 0.00 34.92 2.75
292 293 6.073819 CGACCCTGGAAAATGAAAATTTTGAC 60.074 38.462 8.47 0.00 34.24 3.18
384 385 1.226859 CTCCATGCTTGCATTGCCG 60.227 57.895 6.12 0.00 0.00 5.69
417 418 6.089417 GGATTTCATTGGACTTTGTAAAAGCG 59.911 38.462 0.00 0.00 0.00 4.68
418 419 6.368791 GGGATTTCATTGGACTTTGTAAAAGC 59.631 38.462 0.00 0.00 0.00 3.51
461 462 1.606531 CAAGGGCCTCTTCTGGGAG 59.393 63.158 6.46 0.00 32.41 4.30
462 463 2.606587 GCAAGGGCCTCTTCTGGGA 61.607 63.158 6.46 0.00 32.41 4.37
463 464 2.044551 GCAAGGGCCTCTTCTGGG 60.045 66.667 6.46 0.00 32.41 4.45
474 475 4.994756 GTGGGGTGGTGGCAAGGG 62.995 72.222 0.00 0.00 0.00 3.95
475 476 4.217210 TGTGGGGTGGTGGCAAGG 62.217 66.667 0.00 0.00 0.00 3.61
476 477 2.912025 GTGTGGGGTGGTGGCAAG 60.912 66.667 0.00 0.00 0.00 4.01
477 478 3.425014 AGTGTGGGGTGGTGGCAA 61.425 61.111 0.00 0.00 0.00 4.52
492 498 2.669569 AGCATTTGTGCGGCGAGT 60.670 55.556 12.98 0.00 40.27 4.18
500 506 5.396484 CAAGTATTGTGGAGAGCATTTGTG 58.604 41.667 0.00 0.00 42.34 3.33
518 524 3.678056 AAGGAAGTGACGATGCAAGTA 57.322 42.857 0.00 0.00 0.00 2.24
527 533 2.854777 CTGCTTCGATAAGGAAGTGACG 59.145 50.000 4.46 0.00 44.17 4.35
529 535 3.429547 GCTCTGCTTCGATAAGGAAGTGA 60.430 47.826 4.46 3.20 44.17 3.41
530 536 2.863137 GCTCTGCTTCGATAAGGAAGTG 59.137 50.000 4.46 0.00 44.17 3.16
531 537 2.497675 TGCTCTGCTTCGATAAGGAAGT 59.502 45.455 4.46 0.00 44.17 3.01
532 538 3.170791 TGCTCTGCTTCGATAAGGAAG 57.829 47.619 0.00 0.00 44.92 3.46
533 539 3.610040 TTGCTCTGCTTCGATAAGGAA 57.390 42.857 0.00 0.00 32.08 3.36
534 540 3.610040 TTTGCTCTGCTTCGATAAGGA 57.390 42.857 0.00 0.00 32.98 3.36
535 541 6.551385 AATATTTGCTCTGCTTCGATAAGG 57.449 37.500 0.00 0.00 32.98 2.69
558 564 8.441608 GCGACTTCTCGACTGTCTATTATAATA 58.558 37.037 6.21 5.10 43.06 0.98
559 565 7.299586 GCGACTTCTCGACTGTCTATTATAAT 58.700 38.462 6.21 2.97 43.06 1.28
560 566 6.293298 GGCGACTTCTCGACTGTCTATTATAA 60.293 42.308 6.21 0.00 45.37 0.98
561 567 5.178996 GGCGACTTCTCGACTGTCTATTATA 59.821 44.000 6.21 0.00 45.37 0.98
562 568 4.023878 GGCGACTTCTCGACTGTCTATTAT 60.024 45.833 6.21 0.00 45.37 1.28
563 569 3.311871 GGCGACTTCTCGACTGTCTATTA 59.688 47.826 6.21 0.00 45.37 0.98
564 570 2.097791 GGCGACTTCTCGACTGTCTATT 59.902 50.000 6.21 0.00 45.37 1.73
565 571 1.671845 GGCGACTTCTCGACTGTCTAT 59.328 52.381 6.21 0.00 45.37 1.98
566 572 1.085091 GGCGACTTCTCGACTGTCTA 58.915 55.000 6.21 0.00 45.37 2.59
567 573 1.877367 GGCGACTTCTCGACTGTCT 59.123 57.895 6.21 0.00 45.37 3.41
568 574 1.512310 CGGCGACTTCTCGACTGTC 60.512 63.158 0.00 0.00 46.79 3.51
569 575 2.259439 ACGGCGACTTCTCGACTGT 61.259 57.895 16.62 0.00 46.79 3.55
570 576 1.797933 CACGGCGACTTCTCGACTG 60.798 63.158 16.62 0.00 46.79 3.51
571 577 2.561885 CACGGCGACTTCTCGACT 59.438 61.111 16.62 0.00 46.79 4.18
572 578 3.173240 GCACGGCGACTTCTCGAC 61.173 66.667 16.62 0.00 45.36 4.20
583 589 4.337060 GACCCCAAAACGCACGGC 62.337 66.667 0.00 0.00 0.00 5.68
584 590 1.301874 TAGACCCCAAAACGCACGG 60.302 57.895 0.00 0.00 0.00 4.94
585 591 1.571215 GGTAGACCCCAAAACGCACG 61.571 60.000 0.00 0.00 0.00 5.34
586 592 2.250646 GGTAGACCCCAAAACGCAC 58.749 57.895 0.00 0.00 0.00 5.34
587 593 4.804806 GGTAGACCCCAAAACGCA 57.195 55.556 0.00 0.00 0.00 5.24
597 603 1.392589 CATGCATGGTTGGGTAGACC 58.607 55.000 19.40 0.00 40.81 3.85
598 604 0.740737 GCATGCATGGTTGGGTAGAC 59.259 55.000 27.34 3.43 0.00 2.59
599 605 0.625316 AGCATGCATGGTTGGGTAGA 59.375 50.000 25.20 0.00 34.35 2.59
600 606 2.346766 TAGCATGCATGGTTGGGTAG 57.653 50.000 33.95 3.51 39.52 3.18
601 607 3.750371 GTATAGCATGCATGGTTGGGTA 58.250 45.455 33.95 17.81 39.52 3.69
602 608 2.586425 GTATAGCATGCATGGTTGGGT 58.414 47.619 33.95 19.95 39.52 4.51
603 609 1.536766 CGTATAGCATGCATGGTTGGG 59.463 52.381 33.95 17.93 39.52 4.12
604 610 2.221169 ACGTATAGCATGCATGGTTGG 58.779 47.619 33.95 21.91 39.52 3.77
605 611 4.142838 CCATACGTATAGCATGCATGGTTG 60.143 45.833 33.95 23.18 39.52 3.77
606 612 4.002982 CCATACGTATAGCATGCATGGTT 58.997 43.478 33.95 22.92 39.52 3.67
607 613 3.599343 CCATACGTATAGCATGCATGGT 58.401 45.455 31.85 31.85 41.93 3.55
608 614 2.352651 GCCATACGTATAGCATGCATGG 59.647 50.000 27.34 21.34 35.59 3.66
609 615 2.029606 CGCCATACGTATAGCATGCATG 59.970 50.000 22.70 22.70 36.87 4.06
610 616 2.094234 TCGCCATACGTATAGCATGCAT 60.094 45.455 22.74 13.55 44.19 3.96
611 617 1.271102 TCGCCATACGTATAGCATGCA 59.729 47.619 22.74 6.36 44.19 3.96
612 618 1.990799 TCGCCATACGTATAGCATGC 58.009 50.000 22.74 10.51 44.19 4.06
613 619 5.120053 TGAAAATCGCCATACGTATAGCATG 59.880 40.000 22.74 9.93 44.19 4.06
614 620 5.234752 TGAAAATCGCCATACGTATAGCAT 58.765 37.500 22.74 13.55 44.19 3.79
615 621 4.623002 TGAAAATCGCCATACGTATAGCA 58.377 39.130 22.74 12.10 44.19 3.49
616 622 5.779806 ATGAAAATCGCCATACGTATAGC 57.220 39.130 14.98 14.98 44.19 2.97
617 623 6.367695 TCCAATGAAAATCGCCATACGTATAG 59.632 38.462 7.96 1.60 44.19 1.31
618 624 6.224584 TCCAATGAAAATCGCCATACGTATA 58.775 36.000 7.96 0.00 44.19 1.47
619 625 5.060506 TCCAATGAAAATCGCCATACGTAT 58.939 37.500 1.14 1.14 44.19 3.06
620 626 4.443621 TCCAATGAAAATCGCCATACGTA 58.556 39.130 0.00 0.00 44.19 3.57
621 627 3.275143 TCCAATGAAAATCGCCATACGT 58.725 40.909 0.00 0.00 44.19 3.57
622 628 3.961477 TCCAATGAAAATCGCCATACG 57.039 42.857 0.00 0.00 45.62 3.06
623 629 7.064490 ACAAAAATCCAATGAAAATCGCCATAC 59.936 33.333 0.00 0.00 0.00 2.39
624 630 7.102346 ACAAAAATCCAATGAAAATCGCCATA 58.898 30.769 0.00 0.00 0.00 2.74
625 631 5.939296 ACAAAAATCCAATGAAAATCGCCAT 59.061 32.000 0.00 0.00 0.00 4.40
626 632 5.303971 ACAAAAATCCAATGAAAATCGCCA 58.696 33.333 0.00 0.00 0.00 5.69
627 633 5.861222 ACAAAAATCCAATGAAAATCGCC 57.139 34.783 0.00 0.00 0.00 5.54
628 634 6.306837 TCGTACAAAAATCCAATGAAAATCGC 59.693 34.615 0.00 0.00 0.00 4.58
629 635 7.789341 TCGTACAAAAATCCAATGAAAATCG 57.211 32.000 0.00 0.00 0.00 3.34
630 636 9.139174 ACATCGTACAAAAATCCAATGAAAATC 57.861 29.630 0.00 0.00 0.00 2.17
631 637 9.487790 AACATCGTACAAAAATCCAATGAAAAT 57.512 25.926 0.00 0.00 0.00 1.82
632 638 8.759641 CAACATCGTACAAAAATCCAATGAAAA 58.240 29.630 0.00 0.00 0.00 2.29
633 639 8.138074 TCAACATCGTACAAAAATCCAATGAAA 58.862 29.630 0.00 0.00 0.00 2.69
634 640 7.652727 TCAACATCGTACAAAAATCCAATGAA 58.347 30.769 0.00 0.00 0.00 2.57
635 641 7.208225 TCAACATCGTACAAAAATCCAATGA 57.792 32.000 0.00 0.00 0.00 2.57
636 642 7.807433 TCTTCAACATCGTACAAAAATCCAATG 59.193 33.333 0.00 0.00 0.00 2.82
637 643 7.881142 TCTTCAACATCGTACAAAAATCCAAT 58.119 30.769 0.00 0.00 0.00 3.16
638 644 7.265647 TCTTCAACATCGTACAAAAATCCAA 57.734 32.000 0.00 0.00 0.00 3.53
639 645 6.869315 TCTTCAACATCGTACAAAAATCCA 57.131 33.333 0.00 0.00 0.00 3.41
640 646 6.682863 CGATCTTCAACATCGTACAAAAATCC 59.317 38.462 0.00 0.00 38.67 3.01
641 647 7.453034 TCGATCTTCAACATCGTACAAAAATC 58.547 34.615 0.00 0.00 43.07 2.17
642 648 7.359262 TCGATCTTCAACATCGTACAAAAAT 57.641 32.000 0.00 0.00 43.07 1.82
643 649 6.772770 TCGATCTTCAACATCGTACAAAAA 57.227 33.333 0.00 0.00 43.07 1.94
644 650 6.347079 GGTTCGATCTTCAACATCGTACAAAA 60.347 38.462 7.03 0.00 42.55 2.44
645 651 5.119588 GGTTCGATCTTCAACATCGTACAAA 59.880 40.000 7.03 0.00 42.55 2.83
646 652 4.624024 GGTTCGATCTTCAACATCGTACAA 59.376 41.667 7.03 0.00 42.55 2.41
647 653 4.171005 GGTTCGATCTTCAACATCGTACA 58.829 43.478 7.03 0.00 42.55 2.90
648 654 4.171005 TGGTTCGATCTTCAACATCGTAC 58.829 43.478 0.00 0.00 43.07 3.67
649 655 4.443913 TGGTTCGATCTTCAACATCGTA 57.556 40.909 0.00 0.00 43.07 3.43
650 656 3.313012 TGGTTCGATCTTCAACATCGT 57.687 42.857 0.00 0.00 43.07 3.73
651 657 4.661993 TTTGGTTCGATCTTCAACATCG 57.338 40.909 0.00 0.00 43.77 3.84
652 658 5.287035 GCATTTTGGTTCGATCTTCAACATC 59.713 40.000 0.00 0.00 0.00 3.06
653 659 5.163513 GCATTTTGGTTCGATCTTCAACAT 58.836 37.500 0.00 0.00 0.00 2.71
654 660 4.037327 TGCATTTTGGTTCGATCTTCAACA 59.963 37.500 0.00 0.00 0.00 3.33
655 661 4.382754 GTGCATTTTGGTTCGATCTTCAAC 59.617 41.667 0.00 0.00 0.00 3.18
656 662 4.545610 GTGCATTTTGGTTCGATCTTCAA 58.454 39.130 0.00 0.00 0.00 2.69
657 663 3.057596 GGTGCATTTTGGTTCGATCTTCA 60.058 43.478 0.00 0.00 0.00 3.02
658 664 3.057596 TGGTGCATTTTGGTTCGATCTTC 60.058 43.478 0.00 0.00 0.00 2.87
659 665 2.890311 TGGTGCATTTTGGTTCGATCTT 59.110 40.909 0.00 0.00 0.00 2.40
660 666 2.228822 GTGGTGCATTTTGGTTCGATCT 59.771 45.455 0.00 0.00 0.00 2.75
661 667 2.595386 GTGGTGCATTTTGGTTCGATC 58.405 47.619 0.00 0.00 0.00 3.69
662 668 1.068610 CGTGGTGCATTTTGGTTCGAT 60.069 47.619 0.00 0.00 0.00 3.59
663 669 0.309302 CGTGGTGCATTTTGGTTCGA 59.691 50.000 0.00 0.00 0.00 3.71
664 670 0.030101 ACGTGGTGCATTTTGGTTCG 59.970 50.000 0.00 0.00 0.00 3.95
665 671 1.766069 GACGTGGTGCATTTTGGTTC 58.234 50.000 0.00 0.00 0.00 3.62
666 672 0.030101 CGACGTGGTGCATTTTGGTT 59.970 50.000 0.00 0.00 0.00 3.67
667 673 1.098712 ACGACGTGGTGCATTTTGGT 61.099 50.000 1.11 0.00 0.00 3.67
668 674 0.030101 AACGACGTGGTGCATTTTGG 59.970 50.000 3.24 0.00 0.00 3.28
669 675 1.119635 CAACGACGTGGTGCATTTTG 58.880 50.000 3.24 0.00 0.00 2.44
670 676 0.030101 CCAACGACGTGGTGCATTTT 59.970 50.000 3.24 0.00 33.63 1.82
671 677 0.816018 TCCAACGACGTGGTGCATTT 60.816 50.000 3.24 0.00 39.88 2.32
672 678 0.605319 ATCCAACGACGTGGTGCATT 60.605 50.000 3.24 0.00 39.88 3.56
673 679 0.605319 AATCCAACGACGTGGTGCAT 60.605 50.000 3.24 0.00 39.88 3.96
674 680 1.227704 AATCCAACGACGTGGTGCA 60.228 52.632 3.24 0.00 39.88 4.57
675 681 1.206578 CAATCCAACGACGTGGTGC 59.793 57.895 3.24 0.00 39.88 5.01
676 682 1.206578 GCAATCCAACGACGTGGTG 59.793 57.895 3.24 0.00 39.88 4.17
677 683 0.816018 TTGCAATCCAACGACGTGGT 60.816 50.000 0.00 0.00 39.88 4.16
678 684 0.385473 GTTGCAATCCAACGACGTGG 60.385 55.000 0.59 5.67 43.85 4.94
679 685 3.071495 GTTGCAATCCAACGACGTG 57.929 52.632 0.59 0.00 43.85 4.49
686 692 1.149987 GGTACGACGTTGCAATCCAA 58.850 50.000 5.50 0.00 0.00 3.53
687 693 2.830264 GGTACGACGTTGCAATCCA 58.170 52.632 5.50 0.00 0.00 3.41
701 707 3.435671 CACCTCTTGTCCAATTTCGGTAC 59.564 47.826 0.00 0.00 0.00 3.34
702 708 3.071892 ACACCTCTTGTCCAATTTCGGTA 59.928 43.478 0.00 0.00 29.79 4.02
703 709 2.158667 ACACCTCTTGTCCAATTTCGGT 60.159 45.455 0.00 0.00 29.79 4.69
704 710 2.504367 ACACCTCTTGTCCAATTTCGG 58.496 47.619 0.00 0.00 29.79 4.30
705 711 4.202010 ACAAACACCTCTTGTCCAATTTCG 60.202 41.667 0.00 0.00 37.51 3.46
706 712 5.262588 ACAAACACCTCTTGTCCAATTTC 57.737 39.130 0.00 0.00 37.51 2.17
707 713 5.891551 ACTACAAACACCTCTTGTCCAATTT 59.108 36.000 0.00 0.00 37.51 1.82
708 714 5.445964 ACTACAAACACCTCTTGTCCAATT 58.554 37.500 0.00 0.00 37.51 2.32
709 715 5.048846 ACTACAAACACCTCTTGTCCAAT 57.951 39.130 0.00 0.00 37.51 3.16
710 716 4.497291 ACTACAAACACCTCTTGTCCAA 57.503 40.909 0.00 0.00 37.51 3.53
711 717 4.497291 AACTACAAACACCTCTTGTCCA 57.503 40.909 0.00 0.00 37.51 4.02
712 718 4.036380 CCAAACTACAAACACCTCTTGTCC 59.964 45.833 0.00 0.00 37.51 4.02
713 719 4.638865 ACCAAACTACAAACACCTCTTGTC 59.361 41.667 0.00 0.00 37.51 3.18
714 720 4.595986 ACCAAACTACAAACACCTCTTGT 58.404 39.130 0.00 0.00 41.74 3.16
715 721 5.357032 AGAACCAAACTACAAACACCTCTTG 59.643 40.000 0.00 0.00 0.00 3.02
716 722 5.506708 AGAACCAAACTACAAACACCTCTT 58.493 37.500 0.00 0.00 0.00 2.85
717 723 5.112129 AGAACCAAACTACAAACACCTCT 57.888 39.130 0.00 0.00 0.00 3.69
718 724 4.025145 CGAGAACCAAACTACAAACACCTC 60.025 45.833 0.00 0.00 0.00 3.85
719 725 3.875134 CGAGAACCAAACTACAAACACCT 59.125 43.478 0.00 0.00 0.00 4.00
720 726 3.624410 ACGAGAACCAAACTACAAACACC 59.376 43.478 0.00 0.00 0.00 4.16
721 727 4.870221 ACGAGAACCAAACTACAAACAC 57.130 40.909 0.00 0.00 0.00 3.32
722 728 5.294060 GGTAACGAGAACCAAACTACAAACA 59.706 40.000 0.00 0.00 36.96 2.83
723 729 5.525012 AGGTAACGAGAACCAAACTACAAAC 59.475 40.000 8.00 0.00 46.39 2.93
724 730 5.673514 AGGTAACGAGAACCAAACTACAAA 58.326 37.500 8.00 0.00 46.39 2.83
725 731 5.280654 AGGTAACGAGAACCAAACTACAA 57.719 39.130 8.00 0.00 46.39 2.41
726 732 4.942761 AGGTAACGAGAACCAAACTACA 57.057 40.909 8.00 0.00 46.39 2.74
727 733 4.687948 GGAAGGTAACGAGAACCAAACTAC 59.312 45.833 8.00 0.00 46.39 2.73
728 734 4.559300 CGGAAGGTAACGAGAACCAAACTA 60.559 45.833 8.00 0.00 46.39 2.24
729 735 3.736720 GGAAGGTAACGAGAACCAAACT 58.263 45.455 8.00 0.00 46.39 2.66
730 736 2.477754 CGGAAGGTAACGAGAACCAAAC 59.522 50.000 8.00 0.61 46.39 2.93
731 737 2.758009 CGGAAGGTAACGAGAACCAAA 58.242 47.619 8.00 0.00 46.39 3.28
732 738 1.606224 GCGGAAGGTAACGAGAACCAA 60.606 52.381 8.00 0.00 46.39 3.67
733 739 0.037975 GCGGAAGGTAACGAGAACCA 60.038 55.000 8.00 0.00 46.39 3.67
734 740 0.037975 TGCGGAAGGTAACGAGAACC 60.038 55.000 0.00 0.00 46.39 3.62
735 741 1.347320 CTGCGGAAGGTAACGAGAAC 58.653 55.000 0.00 0.00 46.39 3.01
736 742 0.245539 CCTGCGGAAGGTAACGAGAA 59.754 55.000 0.00 0.00 41.74 2.87
737 743 1.888018 CCTGCGGAAGGTAACGAGA 59.112 57.895 0.00 0.00 41.74 4.04
738 744 4.496670 CCTGCGGAAGGTAACGAG 57.503 61.111 0.00 0.00 41.74 4.18
746 752 1.508632 TTTCTCGAAACCTGCGGAAG 58.491 50.000 0.00 0.00 0.00 3.46
747 753 1.956297 TTTTCTCGAAACCTGCGGAA 58.044 45.000 0.00 0.00 0.00 4.30
748 754 1.956297 TTTTTCTCGAAACCTGCGGA 58.044 45.000 0.00 0.00 0.00 5.54
749 755 2.031157 ACATTTTTCTCGAAACCTGCGG 60.031 45.455 0.00 0.00 0.00 5.69
750 756 2.973224 CACATTTTTCTCGAAACCTGCG 59.027 45.455 0.00 0.00 0.00 5.18
751 757 3.964909 ACACATTTTTCTCGAAACCTGC 58.035 40.909 0.00 0.00 0.00 4.85
752 758 4.211389 CGACACATTTTTCTCGAAACCTG 58.789 43.478 0.00 0.00 0.00 4.00
753 759 3.875134 ACGACACATTTTTCTCGAAACCT 59.125 39.130 0.00 0.00 0.00 3.50
754 760 4.205323 ACGACACATTTTTCTCGAAACC 57.795 40.909 0.00 0.00 0.00 3.27
755 761 6.360329 ACATACGACACATTTTTCTCGAAAC 58.640 36.000 0.00 0.00 0.00 2.78
756 762 6.533819 ACATACGACACATTTTTCTCGAAA 57.466 33.333 0.00 0.00 0.00 3.46
757 763 6.309494 CCTACATACGACACATTTTTCTCGAA 59.691 38.462 0.00 0.00 0.00 3.71
758 764 5.803461 CCTACATACGACACATTTTTCTCGA 59.197 40.000 0.00 0.00 0.00 4.04
759 765 5.005394 CCCTACATACGACACATTTTTCTCG 59.995 44.000 0.00 0.00 0.00 4.04
760 766 5.873164 ACCCTACATACGACACATTTTTCTC 59.127 40.000 0.00 0.00 0.00 2.87
761 767 5.642063 CACCCTACATACGACACATTTTTCT 59.358 40.000 0.00 0.00 0.00 2.52
762 768 5.410439 ACACCCTACATACGACACATTTTTC 59.590 40.000 0.00 0.00 0.00 2.29
763 769 5.180492 CACACCCTACATACGACACATTTTT 59.820 40.000 0.00 0.00 0.00 1.94
764 770 4.693566 CACACCCTACATACGACACATTTT 59.306 41.667 0.00 0.00 0.00 1.82
765 771 4.250464 CACACCCTACATACGACACATTT 58.750 43.478 0.00 0.00 0.00 2.32
766 772 3.369052 CCACACCCTACATACGACACATT 60.369 47.826 0.00 0.00 0.00 2.71
767 773 2.167693 CCACACCCTACATACGACACAT 59.832 50.000 0.00 0.00 0.00 3.21
768 774 1.546923 CCACACCCTACATACGACACA 59.453 52.381 0.00 0.00 0.00 3.72
769 775 1.547372 ACCACACCCTACATACGACAC 59.453 52.381 0.00 0.00 0.00 3.67
770 776 1.927487 ACCACACCCTACATACGACA 58.073 50.000 0.00 0.00 0.00 4.35
771 777 4.365723 CATAACCACACCCTACATACGAC 58.634 47.826 0.00 0.00 0.00 4.34
772 778 3.385433 CCATAACCACACCCTACATACGA 59.615 47.826 0.00 0.00 0.00 3.43
773 779 3.133362 ACCATAACCACACCCTACATACG 59.867 47.826 0.00 0.00 0.00 3.06
774 780 4.765813 ACCATAACCACACCCTACATAC 57.234 45.455 0.00 0.00 0.00 2.39
775 781 5.782677 AAACCATAACCACACCCTACATA 57.217 39.130 0.00 0.00 0.00 2.29
776 782 4.668138 AAACCATAACCACACCCTACAT 57.332 40.909 0.00 0.00 0.00 2.29
777 783 5.579753 TTAAACCATAACCACACCCTACA 57.420 39.130 0.00 0.00 0.00 2.74
778 784 6.181908 TCATTAAACCATAACCACACCCTAC 58.818 40.000 0.00 0.00 0.00 3.18
779 785 6.390048 TCATTAAACCATAACCACACCCTA 57.610 37.500 0.00 0.00 0.00 3.53
780 786 5.263872 TCATTAAACCATAACCACACCCT 57.736 39.130 0.00 0.00 0.00 4.34
781 787 5.716094 GTTCATTAAACCATAACCACACCC 58.284 41.667 0.00 0.00 31.20 4.61
794 800 2.031857 TGGTTCGCGTGGTTCATTAAAC 60.032 45.455 5.77 0.00 37.12 2.01
795 801 2.031857 GTGGTTCGCGTGGTTCATTAAA 60.032 45.455 5.77 0.00 0.00 1.52
796 802 1.532007 GTGGTTCGCGTGGTTCATTAA 59.468 47.619 5.77 0.00 0.00 1.40
797 803 1.149987 GTGGTTCGCGTGGTTCATTA 58.850 50.000 5.77 0.00 0.00 1.90
798 804 1.837538 CGTGGTTCGCGTGGTTCATT 61.838 55.000 5.77 0.00 32.40 2.57
799 805 2.314647 CGTGGTTCGCGTGGTTCAT 61.315 57.895 5.77 0.00 32.40 2.57
800 806 2.962786 CGTGGTTCGCGTGGTTCA 60.963 61.111 5.77 0.00 32.40 3.18
814 820 4.459331 CGAAATGGCCACCGCGTG 62.459 66.667 8.16 3.32 35.02 5.34
817 823 3.565910 TTTGCGAAATGGCCACCGC 62.566 57.895 30.39 30.39 46.82 5.68
818 824 0.598680 TTTTTGCGAAATGGCCACCG 60.599 50.000 8.16 13.95 0.00 4.94
819 825 1.147473 CTTTTTGCGAAATGGCCACC 58.853 50.000 8.16 0.00 0.00 4.61
820 826 1.864565 ACTTTTTGCGAAATGGCCAC 58.135 45.000 8.16 0.00 0.00 5.01
821 827 3.735237 TTACTTTTTGCGAAATGGCCA 57.265 38.095 8.56 8.56 0.00 5.36
822 828 5.411083 TTTTTACTTTTTGCGAAATGGCC 57.589 34.783 14.86 0.00 0.00 5.36
845 851 5.517037 CGAGTTAAGATCTCGCAGTTTTT 57.483 39.130 0.00 0.00 45.77 1.94
854 860 2.738135 GCAGGAGCGAGTTAAGATCTC 58.262 52.381 0.00 0.00 0.00 2.75
855 861 2.880963 GCAGGAGCGAGTTAAGATCT 57.119 50.000 0.00 0.00 0.00 2.75
867 873 8.912988 GGATATATATATATGGAGAGCAGGAGC 58.087 40.741 18.09 1.59 42.56 4.70
868 874 9.420118 GGGATATATATATATGGAGAGCAGGAG 57.580 40.741 18.09 0.00 0.00 3.69
869 875 8.915438 TGGGATATATATATATGGAGAGCAGGA 58.085 37.037 18.09 0.00 0.00 3.86
870 876 8.976353 GTGGGATATATATATATGGAGAGCAGG 58.024 40.741 18.09 0.00 0.00 4.85
871 877 9.539194 TGTGGGATATATATATATGGAGAGCAG 57.461 37.037 18.09 0.00 0.00 4.24
872 878 9.314133 GTGTGGGATATATATATATGGAGAGCA 57.686 37.037 18.09 8.03 0.00 4.26
873 879 8.754080 GGTGTGGGATATATATATATGGAGAGC 58.246 40.741 18.09 7.53 0.00 4.09
874 880 9.261035 GGGTGTGGGATATATATATATGGAGAG 57.739 40.741 18.09 0.00 0.00 3.20
875 881 8.184249 GGGGTGTGGGATATATATATATGGAGA 58.816 40.741 18.09 0.52 0.00 3.71
876 882 7.124298 CGGGGTGTGGGATATATATATATGGAG 59.876 44.444 18.09 0.00 0.00 3.86
877 883 6.957606 CGGGGTGTGGGATATATATATATGGA 59.042 42.308 18.09 1.55 0.00 3.41
878 884 6.351881 GCGGGGTGTGGGATATATATATATGG 60.352 46.154 18.09 0.00 0.00 2.74
879 885 6.212589 TGCGGGGTGTGGGATATATATATATG 59.787 42.308 18.09 3.35 0.00 1.78
880 886 6.327781 TGCGGGGTGTGGGATATATATATAT 58.672 40.000 13.97 13.97 0.00 0.86
881 887 5.718039 TGCGGGGTGTGGGATATATATATA 58.282 41.667 5.19 4.92 0.00 0.86
882 888 4.562767 TGCGGGGTGTGGGATATATATAT 58.437 43.478 4.86 4.86 0.00 0.86
883 889 3.964688 CTGCGGGGTGTGGGATATATATA 59.035 47.826 0.00 0.00 0.00 0.86
884 890 2.771943 CTGCGGGGTGTGGGATATATAT 59.228 50.000 0.00 0.00 0.00 0.86
885 891 2.184533 CTGCGGGGTGTGGGATATATA 58.815 52.381 0.00 0.00 0.00 0.86
886 892 0.984230 CTGCGGGGTGTGGGATATAT 59.016 55.000 0.00 0.00 0.00 0.86
887 893 1.764571 GCTGCGGGGTGTGGGATATA 61.765 60.000 0.00 0.00 0.00 0.86
888 894 3.120086 GCTGCGGGGTGTGGGATAT 62.120 63.158 0.00 0.00 0.00 1.63
889 895 3.792736 GCTGCGGGGTGTGGGATA 61.793 66.667 0.00 0.00 0.00 2.59
898 904 3.344137 ATAAGGGTGTGCTGCGGGG 62.344 63.158 0.00 0.00 0.00 5.73
899 905 1.819632 GATAAGGGTGTGCTGCGGG 60.820 63.158 0.00 0.00 0.00 6.13
900 906 2.173669 CGATAAGGGTGTGCTGCGG 61.174 63.158 0.00 0.00 0.00 5.69
901 907 0.739462 TTCGATAAGGGTGTGCTGCG 60.739 55.000 0.00 0.00 0.00 5.18
902 908 1.448985 TTTCGATAAGGGTGTGCTGC 58.551 50.000 0.00 0.00 0.00 5.25
923 929 0.958091 TGCGTGCTGTATGCCTTTTT 59.042 45.000 7.48 0.00 40.72 1.94
924 930 0.523072 CTGCGTGCTGTATGCCTTTT 59.477 50.000 7.48 0.00 40.72 2.27
925 931 0.606401 ACTGCGTGCTGTATGCCTTT 60.606 50.000 7.48 0.00 40.72 3.11
926 932 1.003355 ACTGCGTGCTGTATGCCTT 60.003 52.632 7.48 0.00 40.72 4.35
927 933 1.448540 GACTGCGTGCTGTATGCCT 60.449 57.895 7.48 0.00 40.72 4.75
928 934 2.464459 GGACTGCGTGCTGTATGCC 61.464 63.158 7.48 0.00 40.72 4.40
929 935 1.741401 TGGACTGCGTGCTGTATGC 60.741 57.895 4.29 2.78 41.83 3.14
930 936 0.670239 TGTGGACTGCGTGCTGTATG 60.670 55.000 4.29 0.00 0.00 2.39
931 937 0.670546 GTGTGGACTGCGTGCTGTAT 60.671 55.000 4.29 0.00 0.00 2.29
932 938 1.300620 GTGTGGACTGCGTGCTGTA 60.301 57.895 4.29 0.00 0.00 2.74
933 939 2.588877 GTGTGGACTGCGTGCTGT 60.589 61.111 3.93 3.93 0.00 4.40
934 940 2.588596 TGTGTGGACTGCGTGCTG 60.589 61.111 0.00 0.00 0.00 4.41
935 941 2.588877 GTGTGTGGACTGCGTGCT 60.589 61.111 0.00 0.00 0.00 4.40
936 942 2.894879 TGTGTGTGGACTGCGTGC 60.895 61.111 0.00 0.00 0.00 5.34
937 943 2.870341 CGTGTGTGTGGACTGCGTG 61.870 63.158 0.00 0.00 0.00 5.34
938 944 2.363711 ATCGTGTGTGTGGACTGCGT 62.364 55.000 0.00 0.00 0.00 5.24
939 945 1.617755 GATCGTGTGTGTGGACTGCG 61.618 60.000 0.00 0.00 0.00 5.18
940 946 1.617755 CGATCGTGTGTGTGGACTGC 61.618 60.000 7.03 0.00 0.00 4.40
941 947 0.039527 TCGATCGTGTGTGTGGACTG 60.040 55.000 15.94 0.00 0.00 3.51
942 948 0.241213 CTCGATCGTGTGTGTGGACT 59.759 55.000 15.94 0.00 0.00 3.85
943 949 0.240145 TCTCGATCGTGTGTGTGGAC 59.760 55.000 15.94 0.00 0.00 4.02
944 950 0.240145 GTCTCGATCGTGTGTGTGGA 59.760 55.000 15.94 0.00 0.00 4.02
945 951 0.039527 TGTCTCGATCGTGTGTGTGG 60.040 55.000 15.94 0.00 0.00 4.17
946 952 1.766069 TTGTCTCGATCGTGTGTGTG 58.234 50.000 15.94 0.00 0.00 3.82
947 953 2.124903 GTTTGTCTCGATCGTGTGTGT 58.875 47.619 15.94 0.00 0.00 3.72
948 954 2.394708 AGTTTGTCTCGATCGTGTGTG 58.605 47.619 15.94 2.13 0.00 3.82
949 955 2.034179 TGAGTTTGTCTCGATCGTGTGT 59.966 45.455 15.94 0.00 45.46 3.72
950 956 2.405357 GTGAGTTTGTCTCGATCGTGTG 59.595 50.000 15.94 7.07 45.46 3.82
951 957 2.662700 GTGAGTTTGTCTCGATCGTGT 58.337 47.619 15.94 0.00 45.46 4.49
952 958 1.644295 CGTGAGTTTGTCTCGATCGTG 59.356 52.381 15.94 13.26 45.46 4.35
953 959 1.266175 ACGTGAGTTTGTCTCGATCGT 59.734 47.619 15.94 0.00 46.40 3.73
954 960 1.965083 ACGTGAGTTTGTCTCGATCG 58.035 50.000 9.36 9.36 46.40 3.69
967 973 2.433838 CAGCAGCCAGGACGTGAG 60.434 66.667 0.00 0.00 0.00 3.51
968 974 4.687215 GCAGCAGCCAGGACGTGA 62.687 66.667 0.00 0.00 33.58 4.35
969 975 4.694233 AGCAGCAGCCAGGACGTG 62.694 66.667 0.00 0.00 43.56 4.49
970 976 4.385405 GAGCAGCAGCCAGGACGT 62.385 66.667 0.00 0.00 43.56 4.34
981 987 2.817423 CTTTGATCGCCGGAGCAGC 61.817 63.158 5.05 0.00 40.14 5.25
999 1010 0.605319 TGACACCGCCACCTTTCATC 60.605 55.000 0.00 0.00 0.00 2.92
1078 2873 2.262915 CAGGTGGACGGTCTCAGC 59.737 66.667 16.10 16.10 0.00 4.26
1162 2957 4.830765 GGCGTGCATACTGGCCGA 62.831 66.667 0.00 0.00 35.59 5.54
1598 3409 3.369147 CAGCGTGGACATGTCTTTCTTAG 59.631 47.826 24.50 10.69 0.00 2.18
1599 3410 3.325870 CAGCGTGGACATGTCTTTCTTA 58.674 45.455 24.50 3.09 0.00 2.10
1618 3444 1.355916 GTACTCGGAGTAGCGGCAG 59.644 63.158 17.80 0.00 30.12 4.85
1625 3457 1.632409 ACCACCTCTGTACTCGGAGTA 59.368 52.381 13.70 13.70 43.46 2.59
1632 3464 0.966920 CGTGGAACCACCTCTGTACT 59.033 55.000 16.85 0.00 43.49 2.73
1635 3467 1.046472 TGTCGTGGAACCACCTCTGT 61.046 55.000 16.85 0.00 43.49 3.41
1761 3596 5.126067 GCCATCACCTTCAGCTTCTTTATA 58.874 41.667 0.00 0.00 0.00 0.98
1884 3747 2.035155 TTCGTCTCCTGCTCCGGA 59.965 61.111 2.93 2.93 0.00 5.14
1885 3748 2.492090 CTTCGTCTCCTGCTCCGG 59.508 66.667 0.00 0.00 0.00 5.14
1886 3749 2.202676 GCTTCGTCTCCTGCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
1887 3750 1.140804 GAGCTTCGTCTCCTGCTCC 59.859 63.158 0.00 0.00 44.16 4.70
1888 3751 4.804496 GAGCTTCGTCTCCTGCTC 57.196 61.111 0.00 0.00 43.75 4.26
1889 3752 1.589113 GTGAGCTTCGTCTCCTGCT 59.411 57.895 0.00 0.00 38.59 4.24
1890 3753 1.803519 CGTGAGCTTCGTCTCCTGC 60.804 63.158 0.00 0.00 32.22 4.85
1891 3754 4.467232 CGTGAGCTTCGTCTCCTG 57.533 61.111 0.00 0.00 32.22 3.86
2100 3963 3.081554 CTGGGGTTCTGGGACCAG 58.918 66.667 12.16 12.16 43.87 4.00
2118 3981 4.424566 TCGGCCGCGTACCTGAAC 62.425 66.667 23.51 0.00 0.00 3.18
2150 4019 2.001803 CTCATCACCACCACCCCAT 58.998 57.895 0.00 0.00 0.00 4.00
2153 4022 2.436646 CGCTCATCACCACCACCC 60.437 66.667 0.00 0.00 0.00 4.61
2436 4307 1.302033 CTGATACATGCCTCCGCCC 60.302 63.158 0.00 0.00 0.00 6.13
2439 4310 0.385751 ACGACTGATACATGCCTCCG 59.614 55.000 0.00 0.00 0.00 4.63
2449 4320 1.475280 GGCACCACTGTACGACTGATA 59.525 52.381 0.00 0.00 0.00 2.15
2457 4328 0.739813 GATCACCGGCACCACTGTAC 60.740 60.000 0.00 0.00 0.00 2.90
2470 4341 1.300233 GATCACCGGCTCGATCACC 60.300 63.158 19.15 0.00 38.33 4.02
2476 4347 1.953138 GCATGAGATCACCGGCTCG 60.953 63.158 0.00 0.00 33.89 5.03
2525 4398 4.759793 TCCTATACTTCCATCTAGGGCA 57.240 45.455 0.00 0.00 38.24 5.36
2528 4401 7.674348 TGGTACATTCCTATACTTCCATCTAGG 59.326 40.741 0.00 0.00 39.47 3.02
2530 4403 7.453752 GGTGGTACATTCCTATACTTCCATCTA 59.546 40.741 0.00 0.00 44.52 1.98
2573 4452 0.179026 AGAGCGCATTCATCCATGCT 60.179 50.000 11.47 0.00 46.43 3.79
2603 4482 4.789481 GCACCAATAATACATCAACGGCAG 60.789 45.833 0.00 0.00 0.00 4.85
2604 4483 3.066064 GCACCAATAATACATCAACGGCA 59.934 43.478 0.00 0.00 0.00 5.69
2605 4484 3.315191 AGCACCAATAATACATCAACGGC 59.685 43.478 0.00 0.00 0.00 5.68
2606 4485 4.335315 ACAGCACCAATAATACATCAACGG 59.665 41.667 0.00 0.00 0.00 4.44
2635 4542 9.278734 GTTGCTTGTTCATAAAAATACTAGCTC 57.721 33.333 0.00 0.00 39.17 4.09
2664 4571 2.496070 CGGTCATTACTTCACTCCCTCA 59.504 50.000 0.00 0.00 0.00 3.86
2711 4630 7.336427 GTCTGTCATTGATCCAAAATCTCTTCT 59.664 37.037 0.00 0.00 0.00 2.85
2724 4643 1.134367 TCGTCCCGTCTGTCATTGATC 59.866 52.381 0.00 0.00 0.00 2.92
2739 4658 3.044059 GCATGTGCAAGCCTCGTCC 62.044 63.158 0.00 0.00 41.59 4.79
2740 4659 2.482374 GCATGTGCAAGCCTCGTC 59.518 61.111 0.00 0.00 41.59 4.20
2906 4852 1.517832 CCCTGACGCGATTTCCTCT 59.482 57.895 15.93 0.00 0.00 3.69
3057 5033 9.388346 TGTTTTTGAAACATGATACGACAATAC 57.612 29.630 0.00 0.87 0.00 1.89
3342 5336 6.539649 TTTCTCCATAGACGAACTGTTTTG 57.460 37.500 0.00 0.00 0.00 2.44
3356 5350 4.854173 TGTTGGCATAGCTTTTCTCCATA 58.146 39.130 0.00 0.00 0.00 2.74
3357 5351 3.700538 TGTTGGCATAGCTTTTCTCCAT 58.299 40.909 0.00 0.00 0.00 3.41
3365 5359 4.768968 ACTTCAAGAATGTTGGCATAGCTT 59.231 37.500 0.00 0.00 34.39 3.74
3371 5365 4.469657 ACCTAACTTCAAGAATGTTGGCA 58.530 39.130 0.00 0.00 0.00 4.92
3398 5392 0.025001 CAGCCGAATAGTTTGCGTCG 59.975 55.000 0.00 0.00 0.00 5.12
3399 5393 0.247695 GCAGCCGAATAGTTTGCGTC 60.248 55.000 0.00 0.00 0.00 5.19
3402 5396 4.670606 CGCAGCCGAATAGTTTGC 57.329 55.556 0.00 0.00 36.29 3.68
3426 5420 1.522580 GATCCGCAAGAGAGGCACC 60.523 63.158 0.00 0.00 43.02 5.01
3449 5443 2.235016 GAGTCTCATGGCTCGGTAGAT 58.765 52.381 0.00 0.00 0.00 1.98
3488 5482 1.710816 ACCCTAGGTAGCTCTGATGC 58.289 55.000 8.29 0.00 32.11 3.91
3500 5494 8.673467 ATTGATGACCAAAAGGAAAACCCTAGG 61.673 40.741 0.06 0.06 40.08 3.02
3502 5496 6.081356 ATTGATGACCAAAAGGAAAACCCTA 58.919 36.000 0.00 0.00 40.08 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.