Multiple sequence alignment - TraesCS2A01G036100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G036100 chr2A 100.000 2639 0 0 1 2639 15588945 15591583 0.000000e+00 4874.0
1 TraesCS2A01G036100 chr2B 86.186 2331 169 74 1 2280 24133884 24136112 0.000000e+00 2379.0
2 TraesCS2A01G036100 chr2B 87.500 88 10 1 2315 2401 24138636 24138723 1.670000e-17 100.0
3 TraesCS2A01G036100 chr2D 89.630 1080 57 27 569 1621 13487250 13488301 0.000000e+00 1323.0
4 TraesCS2A01G036100 chr2D 87.179 468 36 10 1814 2278 13488486 13488932 6.520000e-141 510.0
5 TraesCS2A01G036100 chr2D 78.161 261 32 16 2316 2559 13489052 13489304 2.740000e-30 143.0
6 TraesCS2A01G036100 chr1D 83.099 71 10 2 336 405 256552352 256552421 2.190000e-06 63.9
7 TraesCS2A01G036100 chr3B 100.000 28 0 0 521 548 252256031 252256058 5.000000e-03 52.8
8 TraesCS2A01G036100 chr1A 100.000 28 0 0 521 548 538502228 538502201 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G036100 chr2A 15588945 15591583 2638 False 4874.000000 4874 100.000 1 2639 1 chr2A.!!$F1 2638
1 TraesCS2A01G036100 chr2B 24133884 24138723 4839 False 1239.500000 2379 86.843 1 2401 2 chr2B.!!$F1 2400
2 TraesCS2A01G036100 chr2D 13487250 13489304 2054 False 658.666667 1323 84.990 569 2559 3 chr2D.!!$F1 1990

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 430 0.465642 CCCTCGCCCCCACTTTTATC 60.466 60.0 0.0 0.0 0.0 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 1867 0.109532 TGATCCACGTCCAAGCCAAA 59.89 50.0 0.0 0.0 0.0 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.349357 TCAATGGATGTTGACGGTCCA 59.651 47.619 5.55 9.54 45.37 4.02
43 44 1.468520 CAATGGATGTTGACGGTCCAC 59.531 52.381 5.55 5.50 44.21 4.02
76 77 4.778143 ACATGCGCCCCCGAAGAC 62.778 66.667 4.18 0.00 36.29 3.01
77 78 4.776322 CATGCGCCCCCGAAGACA 62.776 66.667 4.18 0.00 36.29 3.41
100 101 1.288127 CGTTTTCCTCCTCGACCGT 59.712 57.895 0.00 0.00 0.00 4.83
105 106 2.752238 CCTCCTCGACCGTCTGCT 60.752 66.667 0.00 0.00 0.00 4.24
106 107 2.344203 CCTCCTCGACCGTCTGCTT 61.344 63.158 0.00 0.00 0.00 3.91
111 112 3.423154 CGACCGTCTGCTTTGCCC 61.423 66.667 0.00 0.00 0.00 5.36
162 169 2.507992 CCGGCTCTGAGTTGCGAG 60.508 66.667 6.53 0.00 0.00 5.03
179 186 2.576847 GCGGCGCATTAAGCACAC 60.577 61.111 29.21 0.00 46.13 3.82
201 208 2.829003 CCTCGTGGAGCGCCTCTA 60.829 66.667 8.34 0.00 41.07 2.43
202 209 2.718731 CTCGTGGAGCGCCTCTAG 59.281 66.667 8.34 1.50 41.07 2.43
250 258 2.022129 CGAAAGGACGCGTCTGCTT 61.022 57.895 35.50 27.47 39.65 3.91
261 269 4.269523 TCTGCTTTGGGCCAGCGT 62.270 61.111 6.23 0.00 40.45 5.07
273 281 2.036571 CCAGCGTCATTGCAGAGCA 61.037 57.895 0.00 0.00 37.31 4.26
355 363 2.200092 GAGGGTTTTGGGTGGGCA 59.800 61.111 0.00 0.00 0.00 5.36
376 385 1.681327 GGTAGTCAGGAGTGGGCGA 60.681 63.158 0.00 0.00 0.00 5.54
421 430 0.465642 CCCTCGCCCCCACTTTTATC 60.466 60.000 0.00 0.00 0.00 1.75
433 442 3.751175 CCACTTTTATCTCAGGTTTGCGA 59.249 43.478 0.00 0.00 0.00 5.10
434 443 4.215399 CCACTTTTATCTCAGGTTTGCGAA 59.785 41.667 0.00 0.00 0.00 4.70
472 481 2.610479 CCCATCCACGGATCGATACAAG 60.610 54.545 8.69 0.00 31.62 3.16
478 487 2.097036 ACGGATCGATACAAGACCACA 58.903 47.619 8.69 0.00 0.00 4.17
484 493 4.753516 TCGATACAAGACCACATTGGAT 57.246 40.909 0.00 0.00 40.96 3.41
485 494 4.441792 TCGATACAAGACCACATTGGATG 58.558 43.478 0.00 0.00 40.96 3.51
500 509 5.105392 ACATTGGATGGCAAAATACGTTCAT 60.105 36.000 0.00 0.00 33.60 2.57
504 513 1.544686 GGCAAAATACGTTCATGCCG 58.455 50.000 15.44 3.46 46.11 5.69
506 515 1.179332 CAAAATACGTTCATGCCGCG 58.821 50.000 0.00 0.00 0.00 6.46
513 522 3.418913 TTCATGCCGCGTGGTTCG 61.419 61.111 17.91 5.11 43.12 3.95
520 529 2.257371 CGCGTGGTTCGAAGGAGA 59.743 61.111 0.00 0.00 42.86 3.71
534 543 1.661463 AGGAGATTTGAGGGTCAGCA 58.339 50.000 0.00 0.00 0.00 4.41
559 568 3.589654 ATGCCCTCACGTCACACCG 62.590 63.158 0.00 0.00 0.00 4.94
564 573 0.528901 CCTCACGTCACACCGTTGAA 60.529 55.000 0.00 0.00 39.45 2.69
567 576 0.722282 CACGTCACACCGTTGAAACA 59.278 50.000 0.00 0.00 39.45 2.83
571 580 3.119779 ACGTCACACCGTTGAAACATTTT 60.120 39.130 0.00 0.00 37.96 1.82
700 709 5.852827 TGCCTAACATTTTCCTTTTCCAAG 58.147 37.500 0.00 0.00 0.00 3.61
725 734 1.186267 ACCGGAGAAGAAGAAGCCGT 61.186 55.000 9.46 0.00 40.33 5.68
745 754 3.400255 GTGGCGAGTAAAAGAAGAAGGT 58.600 45.455 0.00 0.00 0.00 3.50
762 771 1.352156 GGTGTGACGACCGCTGAATC 61.352 60.000 0.00 0.00 0.00 2.52
768 777 1.291877 ACGACCGCTGAATCTGCAAC 61.292 55.000 12.43 2.36 0.00 4.17
793 802 3.051210 CTGGTCTGGTCACTCGCA 58.949 61.111 0.00 0.00 0.00 5.10
802 811 1.299926 GTCACTCGCAACTCCACGT 60.300 57.895 0.00 0.00 0.00 4.49
810 819 1.734477 CAACTCCACGTCCGAGCTG 60.734 63.158 8.73 4.12 0.00 4.24
902 912 2.651232 CGACGACGAGCCCGATTC 60.651 66.667 0.00 0.00 42.66 2.52
908 918 2.026301 CGAGCCCGATTCGACTCC 59.974 66.667 17.71 6.19 40.36 3.85
912 922 2.024305 CCCGATTCGACTCCGACG 59.976 66.667 7.83 0.00 45.50 5.12
969 990 2.287788 CGCACACAAGCAAAGAATCCTT 60.288 45.455 0.00 0.00 0.00 3.36
977 998 3.961849 AGCAAAGAATCCTTTCCTCTCC 58.038 45.455 0.00 0.00 40.42 3.71
978 999 3.591079 AGCAAAGAATCCTTTCCTCTCCT 59.409 43.478 0.00 0.00 40.42 3.69
980 1001 4.522114 CAAAGAATCCTTTCCTCTCCTCC 58.478 47.826 0.00 0.00 40.42 4.30
981 1002 2.770447 AGAATCCTTTCCTCTCCTCCC 58.230 52.381 0.00 0.00 31.84 4.30
982 1003 2.046447 AGAATCCTTTCCTCTCCTCCCA 59.954 50.000 0.00 0.00 31.84 4.37
983 1004 2.188818 ATCCTTTCCTCTCCTCCCAG 57.811 55.000 0.00 0.00 0.00 4.45
985 1006 1.519719 CTTTCCTCTCCTCCCAGCG 59.480 63.158 0.00 0.00 0.00 5.18
986 1007 0.972983 CTTTCCTCTCCTCCCAGCGA 60.973 60.000 0.00 0.00 0.00 4.93
987 1008 1.258445 TTTCCTCTCCTCCCAGCGAC 61.258 60.000 0.00 0.00 0.00 5.19
988 1009 2.363018 CCTCTCCTCCCAGCGACA 60.363 66.667 0.00 0.00 0.00 4.35
989 1010 1.984570 CCTCTCCTCCCAGCGACAA 60.985 63.158 0.00 0.00 0.00 3.18
1006 1027 1.267806 ACAACAAAGCCAAGATGAGCG 59.732 47.619 0.00 0.00 0.00 5.03
1643 1682 4.087892 CAGCCACCAGTAGCCGCT 62.088 66.667 0.00 0.00 0.00 5.52
1644 1683 4.087892 AGCCACCAGTAGCCGCTG 62.088 66.667 2.16 0.00 36.31 5.18
1665 1724 2.419297 GCTGCTATCTATCCATTCCCCG 60.419 54.545 0.00 0.00 0.00 5.73
1673 1732 4.770874 CCATTCCCCGTCGCCGTT 62.771 66.667 0.00 0.00 0.00 4.44
1674 1733 3.496131 CATTCCCCGTCGCCGTTG 61.496 66.667 0.00 0.00 0.00 4.10
1675 1734 4.011517 ATTCCCCGTCGCCGTTGT 62.012 61.111 0.00 0.00 0.00 3.32
1676 1735 2.648143 ATTCCCCGTCGCCGTTGTA 61.648 57.895 0.00 0.00 0.00 2.41
1677 1736 2.567564 ATTCCCCGTCGCCGTTGTAG 62.568 60.000 0.00 0.00 0.00 2.74
1679 1738 4.430765 CCCGTCGCCGTTGTAGCT 62.431 66.667 0.00 0.00 0.00 3.32
1680 1739 2.486504 CCGTCGCCGTTGTAGCTA 59.513 61.111 0.00 0.00 0.00 3.32
1681 1740 1.870901 CCGTCGCCGTTGTAGCTAC 60.871 63.158 17.30 17.30 0.00 3.58
1682 1741 1.136147 CGTCGCCGTTGTAGCTACT 59.864 57.895 23.84 0.00 0.00 2.57
1683 1742 0.374758 CGTCGCCGTTGTAGCTACTA 59.625 55.000 23.84 14.54 0.00 1.82
1684 1743 1.820092 GTCGCCGTTGTAGCTACTAC 58.180 55.000 23.40 23.40 37.46 2.73
1685 1744 1.131126 GTCGCCGTTGTAGCTACTACA 59.869 52.381 29.34 11.02 44.00 2.74
1686 1745 2.019249 TCGCCGTTGTAGCTACTACAT 58.981 47.619 29.34 0.00 44.85 2.29
1687 1746 3.002656 GTCGCCGTTGTAGCTACTACATA 59.997 47.826 29.34 14.05 44.85 2.29
1688 1747 3.817084 TCGCCGTTGTAGCTACTACATAT 59.183 43.478 29.34 0.00 44.85 1.78
1689 1748 4.276678 TCGCCGTTGTAGCTACTACATATT 59.723 41.667 29.34 0.00 44.85 1.28
1690 1749 4.615961 CGCCGTTGTAGCTACTACATATTC 59.384 45.833 29.34 15.91 44.85 1.75
1691 1750 5.562307 CGCCGTTGTAGCTACTACATATTCT 60.562 44.000 29.34 0.00 44.85 2.40
1739 1798 1.277842 TGCCAGACATGTGTACGGATT 59.722 47.619 1.15 0.00 0.00 3.01
1741 1800 2.864343 GCCAGACATGTGTACGGATTAC 59.136 50.000 1.15 0.00 0.00 1.89
1750 1809 5.333299 TGTGTACGGATTACATTACTGCT 57.667 39.130 0.00 0.00 42.82 4.24
1751 1810 6.453926 TGTGTACGGATTACATTACTGCTA 57.546 37.500 0.00 0.00 42.82 3.49
1754 1813 6.417044 GTGTACGGATTACATTACTGCTAGTG 59.583 42.308 0.00 0.00 42.82 2.74
1777 1850 5.303845 TGAAACAATTTCACCATCACCATCA 59.696 36.000 0.00 0.00 44.21 3.07
1778 1851 4.789012 ACAATTTCACCATCACCATCAC 57.211 40.909 0.00 0.00 0.00 3.06
1779 1852 3.511146 ACAATTTCACCATCACCATCACC 59.489 43.478 0.00 0.00 0.00 4.02
1780 1853 2.967745 TTTCACCATCACCATCACCA 57.032 45.000 0.00 0.00 0.00 4.17
1781 1854 3.454719 TTTCACCATCACCATCACCAT 57.545 42.857 0.00 0.00 0.00 3.55
1782 1855 2.715749 TCACCATCACCATCACCATC 57.284 50.000 0.00 0.00 0.00 3.51
1783 1856 1.134431 TCACCATCACCATCACCATCG 60.134 52.381 0.00 0.00 0.00 3.84
1784 1857 0.911769 ACCATCACCATCACCATCGT 59.088 50.000 0.00 0.00 0.00 3.73
1786 1859 1.139654 CCATCACCATCACCATCGTCT 59.860 52.381 0.00 0.00 0.00 4.18
1787 1860 2.365293 CCATCACCATCACCATCGTCTA 59.635 50.000 0.00 0.00 0.00 2.59
1788 1861 3.384668 CATCACCATCACCATCGTCTAC 58.615 50.000 0.00 0.00 0.00 2.59
1789 1862 2.452505 TCACCATCACCATCGTCTACA 58.547 47.619 0.00 0.00 0.00 2.74
1791 1864 3.126073 CACCATCACCATCGTCTACATG 58.874 50.000 0.00 0.00 0.00 3.21
1792 1865 3.031013 ACCATCACCATCGTCTACATGA 58.969 45.455 0.00 0.00 0.00 3.07
1794 1867 4.101585 ACCATCACCATCGTCTACATGATT 59.898 41.667 0.00 0.00 0.00 2.57
1797 1870 6.424683 CATCACCATCGTCTACATGATTTTG 58.575 40.000 0.00 0.00 0.00 2.44
1798 1871 4.875536 TCACCATCGTCTACATGATTTTGG 59.124 41.667 0.00 0.00 0.00 3.28
1799 1872 3.627577 ACCATCGTCTACATGATTTTGGC 59.372 43.478 0.00 0.00 0.00 4.52
1800 1873 3.879295 CCATCGTCTACATGATTTTGGCT 59.121 43.478 0.00 0.00 0.00 4.75
1801 1874 4.336433 CCATCGTCTACATGATTTTGGCTT 59.664 41.667 0.00 0.00 0.00 4.35
1804 1877 3.689161 CGTCTACATGATTTTGGCTTGGA 59.311 43.478 0.00 0.00 0.00 3.53
1807 1880 2.238521 ACATGATTTTGGCTTGGACGT 58.761 42.857 0.00 0.00 0.00 4.34
1808 1881 2.030007 ACATGATTTTGGCTTGGACGTG 60.030 45.455 0.00 0.00 0.00 4.49
1810 1883 1.243902 GATTTTGGCTTGGACGTGGA 58.756 50.000 0.00 0.00 0.00 4.02
1811 1884 1.818674 GATTTTGGCTTGGACGTGGAT 59.181 47.619 0.00 0.00 0.00 3.41
1812 1885 1.243902 TTTTGGCTTGGACGTGGATC 58.756 50.000 0.00 0.00 0.00 3.36
1815 1888 1.003839 GGCTTGGACGTGGATCACA 60.004 57.895 0.00 0.00 33.40 3.58
1822 1908 2.218603 GGACGTGGATCACAAAGTTGT 58.781 47.619 0.00 0.00 43.36 3.32
1925 2011 0.095935 CGGCAATCTTTCACGAGCAG 59.904 55.000 0.00 0.00 0.00 4.24
1933 2019 2.731691 TTTCACGAGCAGGGACAGGC 62.732 60.000 0.00 0.00 0.00 4.85
1955 2041 4.147701 GGGCACCGATCTTGATGG 57.852 61.111 0.00 0.00 40.86 3.51
1956 2042 1.526917 GGGCACCGATCTTGATGGG 60.527 63.158 9.61 9.61 40.86 4.00
1957 2043 1.224592 GGCACCGATCTTGATGGGT 59.775 57.895 10.81 10.81 32.62 4.51
1959 2045 3.861341 CACCGATCTTGATGGGTGT 57.139 52.632 26.25 3.58 42.94 4.16
1960 2046 2.113860 CACCGATCTTGATGGGTGTT 57.886 50.000 26.25 2.99 42.94 3.32
2048 2136 1.463444 CGAAGACGAATTGGGTGAACC 59.537 52.381 0.00 0.00 42.66 3.62
2052 2140 0.395312 ACGAATTGGGTGAACCTCGT 59.605 50.000 8.27 8.27 38.05 4.18
2164 2252 3.721706 CTGCCACCTCCCTCCCAC 61.722 72.222 0.00 0.00 0.00 4.61
2165 2253 4.270153 TGCCACCTCCCTCCCACT 62.270 66.667 0.00 0.00 0.00 4.00
2166 2254 3.403558 GCCACCTCCCTCCCACTC 61.404 72.222 0.00 0.00 0.00 3.51
2167 2255 2.689034 CCACCTCCCTCCCACTCC 60.689 72.222 0.00 0.00 0.00 3.85
2168 2256 2.689034 CACCTCCCTCCCACTCCC 60.689 72.222 0.00 0.00 0.00 4.30
2169 2257 3.208592 ACCTCCCTCCCACTCCCA 61.209 66.667 0.00 0.00 0.00 4.37
2170 2258 2.366167 CCTCCCTCCCACTCCCAG 60.366 72.222 0.00 0.00 0.00 4.45
2171 2259 2.366167 CTCCCTCCCACTCCCAGG 60.366 72.222 0.00 0.00 0.00 4.45
2211 2319 1.479709 CGCCCCCATCACCAAATTAA 58.520 50.000 0.00 0.00 0.00 1.40
2212 2320 1.136110 CGCCCCCATCACCAAATTAAC 59.864 52.381 0.00 0.00 0.00 2.01
2213 2321 1.484653 GCCCCCATCACCAAATTAACC 59.515 52.381 0.00 0.00 0.00 2.85
2280 2392 1.056103 CGTCTTCGTTCAGTCAGCAG 58.944 55.000 0.00 0.00 0.00 4.24
2281 2393 1.600663 CGTCTTCGTTCAGTCAGCAGT 60.601 52.381 0.00 0.00 0.00 4.40
2283 2395 1.000163 TCTTCGTTCAGTCAGCAGTCC 60.000 52.381 0.00 0.00 0.00 3.85
2284 2396 0.750249 TTCGTTCAGTCAGCAGTCCA 59.250 50.000 0.00 0.00 0.00 4.02
2286 2398 0.946221 CGTTCAGTCAGCAGTCCACC 60.946 60.000 0.00 0.00 0.00 4.61
2288 2400 1.059098 TTCAGTCAGCAGTCCACCAT 58.941 50.000 0.00 0.00 0.00 3.55
2289 2401 0.610174 TCAGTCAGCAGTCCACCATC 59.390 55.000 0.00 0.00 0.00 3.51
2290 2402 0.738762 CAGTCAGCAGTCCACCATCG 60.739 60.000 0.00 0.00 0.00 3.84
2292 2404 2.821366 CAGCAGTCCACCATCGGC 60.821 66.667 0.00 0.00 0.00 5.54
2300 2482 1.519455 CCACCATCGGCTTCGACTC 60.519 63.158 0.00 0.00 46.32 3.36
2349 2543 3.880846 GCCAAGGATCGCGGCAAG 61.881 66.667 6.13 0.00 45.52 4.01
2360 2554 2.189499 GCGGCAAGGGTGATGGATC 61.189 63.158 0.00 0.00 0.00 3.36
2364 2558 0.179006 GCAAGGGTGATGGATCCTCC 60.179 60.000 14.23 9.90 36.96 4.30
2375 2574 1.442526 GGATCCTCCAGCGCAATGTG 61.443 60.000 11.47 0.00 36.28 3.21
2381 2580 2.177531 CAGCGCAATGTGACTGCC 59.822 61.111 11.47 0.00 36.40 4.85
2409 2608 2.450609 GTGAAACTGTTCCGCTAGGA 57.549 50.000 0.00 0.00 46.75 2.94
2418 2617 2.241502 TCCGCTAGGAGGGATGAGA 58.758 57.895 0.00 0.00 42.75 3.27
2419 2618 0.780637 TCCGCTAGGAGGGATGAGAT 59.219 55.000 0.00 0.00 42.75 2.75
2420 2619 1.181786 CCGCTAGGAGGGATGAGATC 58.818 60.000 0.00 0.00 41.02 2.75
2423 2622 2.554124 CGCTAGGAGGGATGAGATCTCA 60.554 54.545 27.03 27.03 44.59 3.27
2424 2623 6.942313 CCGCTAGGAGGGATGAGATCTCAT 62.942 54.167 33.39 33.39 46.14 2.90
2474 2680 2.645730 TGCAACCTGAACAACACAAC 57.354 45.000 0.00 0.00 0.00 3.32
2475 2681 1.889170 TGCAACCTGAACAACACAACA 59.111 42.857 0.00 0.00 0.00 3.33
2482 2688 3.796178 CCTGAACAACACAACATTTTCGG 59.204 43.478 0.00 0.00 0.00 4.30
2508 2726 6.036470 GCTTTTATTCGGCTTGCTAATTCTT 58.964 36.000 0.00 0.00 0.00 2.52
2513 2731 2.747446 TCGGCTTGCTAATTCTTGTTCC 59.253 45.455 0.00 0.00 0.00 3.62
2533 2751 3.995809 CTACCAGGCCGGGAAGGGA 62.996 68.421 30.18 7.46 41.48 4.20
2584 2844 1.210931 CTGCCATTGCGTCCAAGTG 59.789 57.895 0.00 0.00 41.78 3.16
2596 2856 0.397564 TCCAAGTGGACCCGTAAACC 59.602 55.000 0.00 0.00 39.78 3.27
2597 2857 0.108963 CCAAGTGGACCCGTAAACCA 59.891 55.000 0.00 0.00 37.39 3.67
2598 2858 1.519408 CAAGTGGACCCGTAAACCAG 58.481 55.000 0.00 0.00 34.21 4.00
2599 2859 0.399075 AAGTGGACCCGTAAACCAGG 59.601 55.000 0.00 0.00 34.21 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.291089 ACATCCATTGACATCAGCCACA 60.291 45.455 0.00 0.00 0.00 4.17
12 13 2.372264 ACATCCATTGACATCAGCCAC 58.628 47.619 0.00 0.00 0.00 5.01
14 15 3.018856 TCAACATCCATTGACATCAGCC 58.981 45.455 0.00 0.00 33.62 4.85
76 77 2.358737 AGGAGGAAAACGCCGCTG 60.359 61.111 0.00 0.00 44.78 5.18
77 78 2.047179 GAGGAGGAAAACGCCGCT 60.047 61.111 0.00 0.00 44.78 5.52
100 101 4.927782 ACACGCGGGCAAAGCAGA 62.928 61.111 9.12 0.00 34.19 4.26
167 174 1.226018 GGACGCGTGTGCTTAATGC 60.226 57.895 20.70 0.00 39.65 3.56
222 230 4.735132 TCCTTTCGCTGGCGTCGG 62.735 66.667 14.55 12.63 40.74 4.79
250 258 3.372730 GCAATGACGCTGGCCCAA 61.373 61.111 0.00 0.00 0.00 4.12
261 269 3.129502 GCGGCTGCTCTGCAATGA 61.130 61.111 11.21 0.00 46.35 2.57
308 316 2.504244 GAGCGTTCCCGTCTGACG 60.504 66.667 22.49 22.49 42.11 4.35
329 337 1.377333 CAAAACCCTCCTCCTCGCC 60.377 63.158 0.00 0.00 0.00 5.54
340 348 2.515979 CCTTGCCCACCCAAAACCC 61.516 63.158 0.00 0.00 0.00 4.11
355 363 0.910088 GCCCACTCCTGACTACCCTT 60.910 60.000 0.00 0.00 0.00 3.95
376 385 3.066814 GCGTCCGGACCACTACCT 61.067 66.667 28.52 0.00 0.00 3.08
405 414 1.209504 CTGAGATAAAAGTGGGGGCGA 59.790 52.381 0.00 0.00 0.00 5.54
411 420 3.751175 TCGCAAACCTGAGATAAAAGTGG 59.249 43.478 0.00 0.00 0.00 4.00
455 464 1.679680 GGTCTTGTATCGATCCGTGGA 59.320 52.381 0.00 0.00 0.00 4.02
457 466 2.159296 TGTGGTCTTGTATCGATCCGTG 60.159 50.000 0.00 0.00 0.00 4.94
472 481 3.615224 ATTTTGCCATCCAATGTGGTC 57.385 42.857 0.00 0.00 39.03 4.02
478 487 5.350633 CATGAACGTATTTTGCCATCCAAT 58.649 37.500 0.00 0.00 32.49 3.16
504 513 1.128692 CAAATCTCCTTCGAACCACGC 59.871 52.381 0.00 0.00 42.26 5.34
506 515 3.003480 CCTCAAATCTCCTTCGAACCAC 58.997 50.000 0.00 0.00 0.00 4.16
513 522 2.026822 TGCTGACCCTCAAATCTCCTTC 60.027 50.000 0.00 0.00 0.00 3.46
518 527 2.309755 TCCAATGCTGACCCTCAAATCT 59.690 45.455 0.00 0.00 0.00 2.40
520 529 2.309755 TCTCCAATGCTGACCCTCAAAT 59.690 45.455 0.00 0.00 0.00 2.32
534 543 0.179000 GACGTGAGGGCATCTCCAAT 59.821 55.000 0.00 0.00 41.76 3.16
559 568 8.233692 TGTGTTGTGTCTAAAAATGTTTCAAC 57.766 30.769 3.89 3.89 31.74 3.18
564 573 7.995289 TCTCATGTGTTGTGTCTAAAAATGTT 58.005 30.769 0.00 0.00 0.00 2.71
567 576 9.283768 TGTATCTCATGTGTTGTGTCTAAAAAT 57.716 29.630 0.00 0.00 0.00 1.82
646 655 0.462047 CGTGCCCGGCTTCTTCTTAT 60.462 55.000 11.61 0.00 0.00 1.73
700 709 3.591023 CTTCTTCTTCTCCGGTCTTTCC 58.409 50.000 0.00 0.00 0.00 3.13
725 734 3.181458 ACACCTTCTTCTTTTACTCGCCA 60.181 43.478 0.00 0.00 0.00 5.69
745 754 0.388520 CAGATTCAGCGGTCGTCACA 60.389 55.000 0.00 0.00 0.00 3.58
793 802 2.651361 CAGCTCGGACGTGGAGTT 59.349 61.111 13.11 6.04 34.00 3.01
802 811 1.682344 TTAGGCAGAGCAGCTCGGA 60.682 57.895 25.01 2.56 35.36 4.55
891 900 2.026301 GGAGTCGAATCGGGCTCG 59.974 66.667 0.00 0.00 37.66 5.03
892 901 2.026301 CGGAGTCGAATCGGGCTC 59.974 66.667 12.06 15.65 39.00 4.70
902 912 4.337060 TGGTGTGCGTCGGAGTCG 62.337 66.667 0.00 0.00 42.81 4.18
912 922 3.649986 GTCAGCGTGGTGGTGTGC 61.650 66.667 0.00 0.00 46.24 4.57
926 936 1.134521 GTGGACTGTGGAGTTGTGTCA 60.135 52.381 0.00 0.00 30.16 3.58
927 937 1.583054 GTGGACTGTGGAGTTGTGTC 58.417 55.000 0.00 0.00 30.16 3.67
969 990 1.682684 GTCGCTGGGAGGAGAGGAA 60.683 63.158 0.00 0.00 0.00 3.36
977 998 1.576421 GCTTTGTTGTCGCTGGGAG 59.424 57.895 0.00 0.00 0.00 4.30
978 999 1.896660 GGCTTTGTTGTCGCTGGGA 60.897 57.895 0.00 0.00 0.00 4.37
980 1001 0.318107 CTTGGCTTTGTTGTCGCTGG 60.318 55.000 0.00 0.00 0.00 4.85
981 1002 0.662619 TCTTGGCTTTGTTGTCGCTG 59.337 50.000 0.00 0.00 0.00 5.18
982 1003 1.267806 CATCTTGGCTTTGTTGTCGCT 59.732 47.619 0.00 0.00 0.00 4.93
983 1004 1.266718 TCATCTTGGCTTTGTTGTCGC 59.733 47.619 0.00 0.00 0.00 5.19
985 1006 2.666619 CGCTCATCTTGGCTTTGTTGTC 60.667 50.000 0.00 0.00 0.00 3.18
986 1007 1.267806 CGCTCATCTTGGCTTTGTTGT 59.732 47.619 0.00 0.00 0.00 3.32
987 1008 1.401931 CCGCTCATCTTGGCTTTGTTG 60.402 52.381 0.00 0.00 0.00 3.33
988 1009 0.883833 CCGCTCATCTTGGCTTTGTT 59.116 50.000 0.00 0.00 0.00 2.83
989 1010 0.962356 CCCGCTCATCTTGGCTTTGT 60.962 55.000 0.00 0.00 0.00 2.83
1276 1303 2.907917 CGCGTAGGAGGAGGAGGG 60.908 72.222 0.00 0.00 0.00 4.30
1621 1660 4.087892 CTACTGGTGGCTGGCGCT 62.088 66.667 14.60 0.00 36.09 5.92
1626 1665 4.087892 AGCGGCTACTGGTGGCTG 62.088 66.667 12.51 12.51 44.95 4.85
1627 1666 4.087892 CAGCGGCTACTGGTGGCT 62.088 66.667 0.26 0.00 37.24 4.75
1642 1681 3.370315 GGGGAATGGATAGATAGCAGCAG 60.370 52.174 0.00 0.00 0.00 4.24
1643 1682 2.573462 GGGGAATGGATAGATAGCAGCA 59.427 50.000 0.00 0.00 0.00 4.41
1644 1683 2.419297 CGGGGAATGGATAGATAGCAGC 60.419 54.545 0.00 0.00 0.00 5.25
1645 1684 2.834549 ACGGGGAATGGATAGATAGCAG 59.165 50.000 0.00 0.00 0.00 4.24
1646 1685 2.832129 GACGGGGAATGGATAGATAGCA 59.168 50.000 0.00 0.00 0.00 3.49
1647 1686 2.159226 CGACGGGGAATGGATAGATAGC 60.159 54.545 0.00 0.00 0.00 2.97
1648 1687 2.159226 GCGACGGGGAATGGATAGATAG 60.159 54.545 0.00 0.00 0.00 2.08
1649 1688 1.822990 GCGACGGGGAATGGATAGATA 59.177 52.381 0.00 0.00 0.00 1.98
1650 1689 0.608640 GCGACGGGGAATGGATAGAT 59.391 55.000 0.00 0.00 0.00 1.98
1651 1690 1.469335 GGCGACGGGGAATGGATAGA 61.469 60.000 0.00 0.00 0.00 1.98
1652 1691 1.004918 GGCGACGGGGAATGGATAG 60.005 63.158 0.00 0.00 0.00 2.08
1653 1692 3.144285 GGCGACGGGGAATGGATA 58.856 61.111 0.00 0.00 0.00 2.59
1665 1724 1.131126 TGTAGTAGCTACAACGGCGAC 59.869 52.381 25.28 11.21 42.94 5.19
1674 1733 8.826293 AGGGGAATAGAATATGTAGTAGCTAC 57.174 38.462 16.43 16.43 37.46 3.58
1675 1734 9.476928 GAAGGGGAATAGAATATGTAGTAGCTA 57.523 37.037 0.00 0.00 0.00 3.32
1676 1735 7.122948 CGAAGGGGAATAGAATATGTAGTAGCT 59.877 40.741 0.00 0.00 0.00 3.32
1677 1736 7.259161 CGAAGGGGAATAGAATATGTAGTAGC 58.741 42.308 0.00 0.00 0.00 3.58
1678 1737 7.259161 GCGAAGGGGAATAGAATATGTAGTAG 58.741 42.308 0.00 0.00 0.00 2.57
1679 1738 6.154021 GGCGAAGGGGAATAGAATATGTAGTA 59.846 42.308 0.00 0.00 0.00 1.82
1680 1739 5.046520 GGCGAAGGGGAATAGAATATGTAGT 60.047 44.000 0.00 0.00 0.00 2.73
1681 1740 5.046591 TGGCGAAGGGGAATAGAATATGTAG 60.047 44.000 0.00 0.00 0.00 2.74
1682 1741 4.841813 TGGCGAAGGGGAATAGAATATGTA 59.158 41.667 0.00 0.00 0.00 2.29
1683 1742 3.650942 TGGCGAAGGGGAATAGAATATGT 59.349 43.478 0.00 0.00 0.00 2.29
1684 1743 4.286297 TGGCGAAGGGGAATAGAATATG 57.714 45.455 0.00 0.00 0.00 1.78
1685 1744 5.256474 CAATGGCGAAGGGGAATAGAATAT 58.744 41.667 0.00 0.00 0.00 1.28
1686 1745 4.651778 CAATGGCGAAGGGGAATAGAATA 58.348 43.478 0.00 0.00 0.00 1.75
1687 1746 3.490348 CAATGGCGAAGGGGAATAGAAT 58.510 45.455 0.00 0.00 0.00 2.40
1688 1747 2.930950 CAATGGCGAAGGGGAATAGAA 58.069 47.619 0.00 0.00 0.00 2.10
1689 1748 1.476833 GCAATGGCGAAGGGGAATAGA 60.477 52.381 0.00 0.00 0.00 1.98
1690 1749 0.954452 GCAATGGCGAAGGGGAATAG 59.046 55.000 0.00 0.00 0.00 1.73
1691 1750 3.109847 GCAATGGCGAAGGGGAATA 57.890 52.632 0.00 0.00 0.00 1.75
1717 1776 0.246360 CCGTACACATGTCTGGCAGA 59.754 55.000 14.43 14.43 0.00 4.26
1719 1778 0.901827 ATCCGTACACATGTCTGGCA 59.098 50.000 0.00 0.00 0.00 4.92
1722 1781 6.978659 AGTAATGTAATCCGTACACATGTCTG 59.021 38.462 0.00 0.00 45.51 3.51
1723 1782 6.978659 CAGTAATGTAATCCGTACACATGTCT 59.021 38.462 0.00 0.00 45.51 3.41
1724 1783 6.292168 GCAGTAATGTAATCCGTACACATGTC 60.292 42.308 0.00 0.00 45.51 3.06
1725 1784 5.522460 GCAGTAATGTAATCCGTACACATGT 59.478 40.000 0.00 0.00 45.51 3.21
1726 1785 5.753438 AGCAGTAATGTAATCCGTACACATG 59.247 40.000 0.00 0.00 45.51 3.21
1727 1786 5.914033 AGCAGTAATGTAATCCGTACACAT 58.086 37.500 0.00 0.00 45.51 3.21
1728 1787 5.333299 AGCAGTAATGTAATCCGTACACA 57.667 39.130 0.00 0.00 45.51 3.72
1729 1788 6.417044 CACTAGCAGTAATGTAATCCGTACAC 59.583 42.308 0.00 0.00 45.51 2.90
1739 1798 9.278978 TGAAATTGTTTCACTAGCAGTAATGTA 57.721 29.630 1.24 0.00 44.21 2.29
1754 1813 5.634859 GTGATGGTGATGGTGAAATTGTTTC 59.365 40.000 0.00 0.00 40.08 2.78
1766 1825 1.139654 AGACGATGGTGATGGTGATGG 59.860 52.381 0.00 0.00 0.00 3.51
1769 1828 2.452505 TGTAGACGATGGTGATGGTGA 58.547 47.619 0.00 0.00 0.00 4.02
1772 1845 3.733443 TCATGTAGACGATGGTGATGG 57.267 47.619 0.00 0.00 0.00 3.51
1777 1850 3.627577 GCCAAAATCATGTAGACGATGGT 59.372 43.478 0.00 0.00 31.40 3.55
1778 1851 3.879295 AGCCAAAATCATGTAGACGATGG 59.121 43.478 0.00 0.00 0.00 3.51
1779 1852 5.268544 CAAGCCAAAATCATGTAGACGATG 58.731 41.667 0.00 0.00 0.00 3.84
1780 1853 4.336433 CCAAGCCAAAATCATGTAGACGAT 59.664 41.667 0.00 0.00 0.00 3.73
1781 1854 3.689161 CCAAGCCAAAATCATGTAGACGA 59.311 43.478 0.00 0.00 0.00 4.20
1782 1855 3.689161 TCCAAGCCAAAATCATGTAGACG 59.311 43.478 0.00 0.00 0.00 4.18
1783 1856 4.437390 CGTCCAAGCCAAAATCATGTAGAC 60.437 45.833 0.00 0.00 0.00 2.59
1784 1857 3.689161 CGTCCAAGCCAAAATCATGTAGA 59.311 43.478 0.00 0.00 0.00 2.59
1786 1859 3.190327 CACGTCCAAGCCAAAATCATGTA 59.810 43.478 0.00 0.00 0.00 2.29
1787 1860 2.030007 CACGTCCAAGCCAAAATCATGT 60.030 45.455 0.00 0.00 0.00 3.21
1788 1861 2.598589 CACGTCCAAGCCAAAATCATG 58.401 47.619 0.00 0.00 0.00 3.07
1789 1862 1.545582 CCACGTCCAAGCCAAAATCAT 59.454 47.619 0.00 0.00 0.00 2.45
1791 1864 1.243902 TCCACGTCCAAGCCAAAATC 58.756 50.000 0.00 0.00 0.00 2.17
1792 1865 1.818674 GATCCACGTCCAAGCCAAAAT 59.181 47.619 0.00 0.00 0.00 1.82
1794 1867 0.109532 TGATCCACGTCCAAGCCAAA 59.890 50.000 0.00 0.00 0.00 3.28
1797 1870 0.605319 TTGTGATCCACGTCCAAGCC 60.605 55.000 0.00 0.00 37.14 4.35
1798 1871 1.197721 CTTTGTGATCCACGTCCAAGC 59.802 52.381 0.00 0.00 37.14 4.01
1799 1872 2.494059 ACTTTGTGATCCACGTCCAAG 58.506 47.619 0.00 0.00 37.14 3.61
1800 1873 2.616376 CAACTTTGTGATCCACGTCCAA 59.384 45.455 0.00 0.00 37.14 3.53
1801 1874 2.217750 CAACTTTGTGATCCACGTCCA 58.782 47.619 0.00 0.00 37.14 4.02
1804 1877 1.864711 CGACAACTTTGTGATCCACGT 59.135 47.619 0.00 0.00 42.43 4.49
1807 1880 2.631160 ACCGACAACTTTGTGATCCA 57.369 45.000 0.00 0.00 42.43 3.41
1808 1881 3.606153 CGAAACCGACAACTTTGTGATCC 60.606 47.826 0.00 0.00 42.43 3.36
1810 1883 2.940410 ACGAAACCGACAACTTTGTGAT 59.060 40.909 0.00 0.00 42.43 3.06
1811 1884 2.348660 ACGAAACCGACAACTTTGTGA 58.651 42.857 0.00 0.00 42.43 3.58
1812 1885 2.700694 GACGAAACCGACAACTTTGTG 58.299 47.619 0.00 0.00 42.43 3.33
1815 1888 0.932399 CCGACGAAACCGACAACTTT 59.068 50.000 0.00 0.00 0.00 2.66
1897 1983 2.142292 AAAGATTGCCGGCCCTGTCT 62.142 55.000 26.77 18.19 0.00 3.41
1903 1989 1.982073 CTCGTGAAAGATTGCCGGCC 61.982 60.000 26.77 8.84 0.00 6.13
1953 2039 2.835431 CCACCGCCAAAACACCCA 60.835 61.111 0.00 0.00 0.00 4.51
1954 2040 4.293648 GCCACCGCCAAAACACCC 62.294 66.667 0.00 0.00 0.00 4.61
1955 2041 4.639171 CGCCACCGCCAAAACACC 62.639 66.667 0.00 0.00 0.00 4.16
1956 2042 4.639171 CCGCCACCGCCAAAACAC 62.639 66.667 0.00 0.00 0.00 3.32
1958 2044 4.639171 CACCGCCACCGCCAAAAC 62.639 66.667 0.00 0.00 0.00 2.43
2010 2098 2.133553 TCGTCTACAGATCGATCGACC 58.866 52.381 22.06 11.68 0.00 4.79
2011 2099 3.490155 TCTTCGTCTACAGATCGATCGAC 59.510 47.826 22.06 17.76 33.72 4.20
2012 2100 3.490155 GTCTTCGTCTACAGATCGATCGA 59.510 47.826 21.86 21.86 33.72 3.59
2013 2101 3.659620 CGTCTTCGTCTACAGATCGATCG 60.660 52.174 19.33 9.36 33.72 3.69
2048 2136 2.126463 ACACGCCATGTCGACGAG 60.126 61.111 11.62 5.55 36.54 4.18
2052 2140 1.663388 GACACACACGCCATGTCGA 60.663 57.895 1.83 0.00 40.64 4.20
2167 2255 1.382146 ATCAATTGCCCTGCCCTGG 60.382 57.895 0.00 0.00 0.00 4.45
2168 2256 0.685131 TCATCAATTGCCCTGCCCTG 60.685 55.000 0.00 0.00 0.00 4.45
2169 2257 0.263765 ATCATCAATTGCCCTGCCCT 59.736 50.000 0.00 0.00 0.00 5.19
2170 2258 0.391597 CATCATCAATTGCCCTGCCC 59.608 55.000 0.00 0.00 0.00 5.36
2171 2259 0.391597 CCATCATCAATTGCCCTGCC 59.608 55.000 0.00 0.00 0.00 4.85
2172 2260 0.249741 GCCATCATCAATTGCCCTGC 60.250 55.000 0.00 0.00 0.00 4.85
2173 2261 0.391597 GGCCATCATCAATTGCCCTG 59.608 55.000 0.00 0.00 39.73 4.45
2174 2262 1.111116 CGGCCATCATCAATTGCCCT 61.111 55.000 2.24 0.00 42.07 5.19
2211 2319 2.118404 CGTTGTGTTGGCTGGTGGT 61.118 57.895 0.00 0.00 0.00 4.16
2212 2320 1.821759 TCGTTGTGTTGGCTGGTGG 60.822 57.895 0.00 0.00 0.00 4.61
2213 2321 1.095228 AGTCGTTGTGTTGGCTGGTG 61.095 55.000 0.00 0.00 0.00 4.17
2280 2392 2.577059 TCGAAGCCGATGGTGGAC 59.423 61.111 0.00 0.00 40.30 4.02
2288 2400 0.952497 ACGTACAGAGTCGAAGCCGA 60.952 55.000 0.00 0.00 43.35 5.54
2289 2401 0.723414 TACGTACAGAGTCGAAGCCG 59.277 55.000 0.00 0.00 37.07 5.52
2290 2402 1.531470 GCTACGTACAGAGTCGAAGCC 60.531 57.143 0.00 0.00 0.00 4.35
2292 2404 1.267433 CCGCTACGTACAGAGTCGAAG 60.267 57.143 0.00 0.00 0.00 3.79
2300 2482 3.384927 GCTTGCCGCTACGTACAG 58.615 61.111 0.00 0.00 35.14 2.74
2360 2554 1.376424 AGTCACATTGCGCTGGAGG 60.376 57.895 9.73 0.00 0.00 4.30
2364 2558 2.177531 GGCAGTCACATTGCGCTG 59.822 61.111 9.73 0.99 42.42 5.18
2365 2559 2.281692 TGGCAGTCACATTGCGCT 60.282 55.556 9.73 0.00 42.42 5.92
2414 2613 8.324306 ACAAGGAAAAAGTATGATGAGATCTCA 58.676 33.333 27.03 27.03 44.59 3.27
2415 2614 8.729805 ACAAGGAAAAAGTATGATGAGATCTC 57.270 34.615 16.21 16.21 0.00 2.75
2416 2615 8.954350 CAACAAGGAAAAAGTATGATGAGATCT 58.046 33.333 0.00 0.00 0.00 2.75
2418 2617 7.395489 AGCAACAAGGAAAAAGTATGATGAGAT 59.605 33.333 0.00 0.00 0.00 2.75
2419 2618 6.716628 AGCAACAAGGAAAAAGTATGATGAGA 59.283 34.615 0.00 0.00 0.00 3.27
2420 2619 6.917533 AGCAACAAGGAAAAAGTATGATGAG 58.082 36.000 0.00 0.00 0.00 2.90
2423 2622 7.054491 ACAAGCAACAAGGAAAAAGTATGAT 57.946 32.000 0.00 0.00 0.00 2.45
2424 2623 6.463995 ACAAGCAACAAGGAAAAAGTATGA 57.536 33.333 0.00 0.00 0.00 2.15
2425 2624 6.074888 CGAACAAGCAACAAGGAAAAAGTATG 60.075 38.462 0.00 0.00 0.00 2.39
2426 2625 5.977129 CGAACAAGCAACAAGGAAAAAGTAT 59.023 36.000 0.00 0.00 0.00 2.12
2427 2626 5.106078 ACGAACAAGCAACAAGGAAAAAGTA 60.106 36.000 0.00 0.00 0.00 2.24
2428 2627 4.173256 CGAACAAGCAACAAGGAAAAAGT 58.827 39.130 0.00 0.00 0.00 2.66
2429 2628 4.031652 CACGAACAAGCAACAAGGAAAAAG 59.968 41.667 0.00 0.00 0.00 2.27
2474 2680 2.529894 CCGAATAAAAGCGCCGAAAATG 59.470 45.455 2.29 0.00 0.00 2.32
2475 2681 2.792749 CCGAATAAAAGCGCCGAAAAT 58.207 42.857 2.29 0.00 0.00 1.82
2482 2688 0.179163 AGCAAGCCGAATAAAAGCGC 60.179 50.000 0.00 0.00 0.00 5.92
2508 2726 1.987855 CCGGCCTGGTAGAGGAACA 60.988 63.158 0.00 0.00 46.33 3.18
2513 2731 2.435693 CCTTCCCGGCCTGGTAGAG 61.436 68.421 19.59 12.59 35.15 2.43
2565 2825 1.973281 ACTTGGACGCAATGGCAGG 60.973 57.895 0.00 0.00 41.24 4.85
2578 2838 0.108963 TGGTTTACGGGTCCACTTGG 59.891 55.000 0.00 0.00 0.00 3.61
2584 2844 1.196766 AGTCCCTGGTTTACGGGTCC 61.197 60.000 0.00 0.00 44.78 4.46
2587 2847 1.376812 GCAGTCCCTGGTTTACGGG 60.377 63.158 0.00 0.00 45.92 5.28
2593 2853 0.250597 GTTTACGGCAGTCCCTGGTT 60.251 55.000 0.00 0.00 31.21 3.67
2594 2854 1.373812 GTTTACGGCAGTCCCTGGT 59.626 57.895 0.00 0.00 31.21 4.00
2595 2855 1.740296 CGTTTACGGCAGTCCCTGG 60.740 63.158 0.00 0.00 35.37 4.45
2596 2856 1.012486 GTCGTTTACGGCAGTCCCTG 61.012 60.000 1.48 0.00 44.43 4.45
2597 2857 1.291272 GTCGTTTACGGCAGTCCCT 59.709 57.895 1.48 0.00 44.43 4.20
2598 2858 3.866356 GTCGTTTACGGCAGTCCC 58.134 61.111 1.48 0.00 44.43 4.46
2607 2867 1.132262 TCACCGGTATCCGTCGTTTAC 59.868 52.381 6.87 0.00 46.80 2.01
2608 2868 1.401552 CTCACCGGTATCCGTCGTTTA 59.598 52.381 6.87 0.00 46.80 2.01
2609 2869 0.171903 CTCACCGGTATCCGTCGTTT 59.828 55.000 6.87 0.00 46.80 3.60
2610 2870 1.805254 CTCACCGGTATCCGTCGTT 59.195 57.895 6.87 0.00 46.80 3.85
2611 2871 2.768492 GCTCACCGGTATCCGTCGT 61.768 63.158 6.87 0.00 46.80 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.