Multiple sequence alignment - TraesCS2A01G035600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G035600 chr2A 100.000 2858 0 0 1 2858 15450536 15447679 0.000000e+00 5278.0
1 TraesCS2A01G035600 chr2A 82.869 1401 171 39 501 1843 15602434 15603823 0.000000e+00 1194.0
2 TraesCS2A01G035600 chr2A 77.982 1467 216 55 463 1854 15530019 15528585 0.000000e+00 821.0
3 TraesCS2A01G035600 chr2A 80.615 975 156 22 890 1843 15459844 15458882 0.000000e+00 723.0
4 TraesCS2A01G035600 chr2A 80.556 972 159 21 890 1843 15467373 15466414 0.000000e+00 721.0
5 TraesCS2A01G035600 chr2A 86.170 94 11 2 1891 1983 15458968 15458876 1.810000e-17 100.0
6 TraesCS2A01G035600 chr2A 84.848 99 13 2 1891 1988 15466500 15466403 6.520000e-17 99.0
7 TraesCS2A01G035600 chr2A 98.113 53 1 0 2805 2857 13417266 13417214 3.030000e-15 93.5
8 TraesCS2A01G035600 chr2A 96.364 55 2 0 2804 2858 15410728 15410782 1.090000e-14 91.6
9 TraesCS2A01G035600 chr2A 94.737 57 3 0 2802 2858 20695174 20695230 3.920000e-14 89.8
10 TraesCS2A01G035600 chr2B 88.065 1860 141 33 49 1859 24099141 24097314 0.000000e+00 2130.0
11 TraesCS2A01G035600 chr2B 83.345 1399 168 35 501 1843 24217009 24218398 0.000000e+00 1232.0
12 TraesCS2A01G035600 chr2B 82.962 1438 169 36 476 1858 772982295 772980879 0.000000e+00 1229.0
13 TraesCS2A01G035600 chr2B 79.900 1403 194 48 522 1854 24110292 24108908 0.000000e+00 948.0
14 TraesCS2A01G035600 chr2B 79.033 1407 211 51 508 1843 24124397 24125790 0.000000e+00 887.0
15 TraesCS2A01G035600 chr2B 81.933 1107 133 32 735 1789 8507286 8508377 0.000000e+00 874.0
16 TraesCS2A01G035600 chr2B 87.907 430 30 8 2378 2803 24095353 24094942 1.190000e-133 486.0
17 TraesCS2A01G035600 chr2B 79.756 573 62 26 522 1042 24215331 24215901 1.620000e-97 366.0
18 TraesCS2A01G035600 chr2B 83.883 273 26 3 581 853 693044355 693044609 7.910000e-61 244.0
19 TraesCS2A01G035600 chr2B 71.702 940 197 52 950 1844 27010531 27011446 6.250000e-47 198.0
20 TraesCS2A01G035600 chr2B 90.769 130 12 0 2250 2379 24095573 24095444 1.050000e-39 174.0
21 TraesCS2A01G035600 chr2B 87.640 89 9 2 1891 1978 24109002 24108915 5.040000e-18 102.0
22 TraesCS2A01G035600 chr2B 85.714 84 12 0 1909 1992 24097398 24097315 3.920000e-14 89.8
23 TraesCS2A01G035600 chr2B 85.714 56 8 0 185 240 690723864 690723809 3.080000e-05 60.2
24 TraesCS2A01G035600 chr2D 84.233 1408 158 31 501 1854 13508822 13510219 0.000000e+00 1312.0
25 TraesCS2A01G035600 chr2D 80.129 1399 196 45 522 1854 13476035 13474653 0.000000e+00 968.0
26 TraesCS2A01G035600 chr2D 84.359 991 135 12 880 1858 630010821 630009839 0.000000e+00 953.0
27 TraesCS2A01G035600 chr2D 83.484 993 134 22 883 1859 2770251 2769273 0.000000e+00 898.0
28 TraesCS2A01G035600 chr2D 78.068 1418 196 51 501 1854 13483018 13481652 0.000000e+00 789.0
29 TraesCS2A01G035600 chr2D 87.973 582 33 16 193 768 13439975 13439425 0.000000e+00 652.0
30 TraesCS2A01G035600 chr2D 91.117 394 16 6 1746 2121 13434399 13434007 1.520000e-142 516.0
31 TraesCS2A01G035600 chr2D 77.668 909 138 38 1110 1992 13435152 13434283 7.110000e-136 494.0
32 TraesCS2A01G035600 chr2D 88.690 336 25 11 2378 2712 13432892 13432569 5.740000e-107 398.0
33 TraesCS2A01G035600 chr2D 74.324 444 78 23 950 1363 14971106 14971543 3.810000e-34 156.0
34 TraesCS2A01G035600 chr2D 90.476 105 6 1 2270 2374 13433065 13432965 4.970000e-28 135.0
35 TraesCS2A01G035600 chr2D 88.750 80 9 0 1909 1988 13510140 13510219 6.520000e-17 99.0
36 TraesCS2A01G035600 chr2D 85.870 92 8 4 1888 1978 13474747 13474660 3.030000e-15 93.5
37 TraesCS2A01G035600 chr2D 90.323 62 1 3 2184 2244 13434003 13433946 3.050000e-10 76.8
38 TraesCS2A01G035600 chr2D 77.519 129 28 1 111 238 344313041 344312913 3.050000e-10 76.8
39 TraesCS2A01G035600 chrUn 85.202 223 32 1 1634 1855 15427746 15427968 7.970000e-56 228.0
40 TraesCS2A01G035600 chr6A 76.327 245 46 10 66 304 597317504 597317742 1.390000e-23 121.0
41 TraesCS2A01G035600 chr3A 82.353 119 18 1 2445 2560 121201854 121201736 1.810000e-17 100.0
42 TraesCS2A01G035600 chr4D 80.469 128 19 2 2445 2566 497543915 497543788 3.030000e-15 93.5
43 TraesCS2A01G035600 chr5B 96.364 55 2 0 2804 2858 310437858 310437912 1.090000e-14 91.6
44 TraesCS2A01G035600 chr5B 96.296 54 2 0 2805 2858 310404112 310404059 3.920000e-14 89.8
45 TraesCS2A01G035600 chr5B 96.296 54 2 0 2805 2858 310412098 310412045 3.920000e-14 89.8
46 TraesCS2A01G035600 chr5B 96.296 54 2 0 2805 2858 310446023 310446076 3.920000e-14 89.8
47 TraesCS2A01G035600 chr5B 91.803 61 5 0 2798 2858 62661007 62661067 5.070000e-13 86.1
48 TraesCS2A01G035600 chr1A 96.296 54 2 0 2805 2858 220962512 220962565 3.920000e-14 89.8
49 TraesCS2A01G035600 chr7A 74.619 197 42 7 74 266 533896527 533896719 2.360000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G035600 chr2A 15447679 15450536 2857 True 5278.00 5278 100.00000 1 2858 1 chr2A.!!$R2 2857
1 TraesCS2A01G035600 chr2A 15602434 15603823 1389 False 1194.00 1194 82.86900 501 1843 1 chr2A.!!$F2 1342
2 TraesCS2A01G035600 chr2A 15528585 15530019 1434 True 821.00 821 77.98200 463 1854 1 chr2A.!!$R3 1391
3 TraesCS2A01G035600 chr2A 15458876 15459844 968 True 411.50 723 83.39250 890 1983 2 chr2A.!!$R4 1093
4 TraesCS2A01G035600 chr2A 15466403 15467373 970 True 410.00 721 82.70200 890 1988 2 chr2A.!!$R5 1098
5 TraesCS2A01G035600 chr2B 772980879 772982295 1416 True 1229.00 1229 82.96200 476 1858 1 chr2B.!!$R2 1382
6 TraesCS2A01G035600 chr2B 24124397 24125790 1393 False 887.00 887 79.03300 508 1843 1 chr2B.!!$F2 1335
7 TraesCS2A01G035600 chr2B 8507286 8508377 1091 False 874.00 874 81.93300 735 1789 1 chr2B.!!$F1 1054
8 TraesCS2A01G035600 chr2B 24215331 24218398 3067 False 799.00 1232 81.55050 501 1843 2 chr2B.!!$F5 1342
9 TraesCS2A01G035600 chr2B 24094942 24099141 4199 True 719.95 2130 88.11375 49 2803 4 chr2B.!!$R3 2754
10 TraesCS2A01G035600 chr2B 24108908 24110292 1384 True 525.00 948 83.77000 522 1978 2 chr2B.!!$R4 1456
11 TraesCS2A01G035600 chr2D 630009839 630010821 982 True 953.00 953 84.35900 880 1858 1 chr2D.!!$R5 978
12 TraesCS2A01G035600 chr2D 2769273 2770251 978 True 898.00 898 83.48400 883 1859 1 chr2D.!!$R1 976
13 TraesCS2A01G035600 chr2D 13481652 13483018 1366 True 789.00 789 78.06800 501 1854 1 chr2D.!!$R3 1353
14 TraesCS2A01G035600 chr2D 13508822 13510219 1397 False 705.50 1312 86.49150 501 1988 2 chr2D.!!$F2 1487
15 TraesCS2A01G035600 chr2D 13439425 13439975 550 True 652.00 652 87.97300 193 768 1 chr2D.!!$R2 575
16 TraesCS2A01G035600 chr2D 13474653 13476035 1382 True 530.75 968 82.99950 522 1978 2 chr2D.!!$R7 1456
17 TraesCS2A01G035600 chr2D 13432569 13435152 2583 True 323.96 516 87.65480 1110 2712 5 chr2D.!!$R6 1602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
814 2035 0.248417 CTGACGATCTCGCTCCACTG 60.248 60.0 0.0 0.0 44.43 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2709 6509 0.392998 CTCCCAGATCAAACACCCGG 60.393 60.0 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.940192 TTTGTGTGTCTACATGTTGGATC 57.060 39.130 2.30 2.42 39.39 3.36
23 24 4.615588 TGTGTGTCTACATGTTGGATCA 57.384 40.909 2.30 4.80 39.39 2.92
25 26 4.040339 TGTGTGTCTACATGTTGGATCACT 59.960 41.667 22.50 0.00 39.39 3.41
27 28 5.470098 GTGTGTCTACATGTTGGATCACTTT 59.530 40.000 2.30 0.00 39.39 2.66
28 29 5.700832 TGTGTCTACATGTTGGATCACTTTC 59.299 40.000 2.30 0.00 0.00 2.62
29 30 5.700832 GTGTCTACATGTTGGATCACTTTCA 59.299 40.000 2.30 0.00 0.00 2.69
30 31 6.372659 GTGTCTACATGTTGGATCACTTTCAT 59.627 38.462 2.30 0.00 0.00 2.57
31 32 7.549134 GTGTCTACATGTTGGATCACTTTCATA 59.451 37.037 2.30 0.00 0.00 2.15
32 33 8.267183 TGTCTACATGTTGGATCACTTTCATAT 58.733 33.333 2.30 0.00 0.00 1.78
34 35 8.267183 TCTACATGTTGGATCACTTTCATATGT 58.733 33.333 2.30 0.00 0.00 2.29
35 36 9.546428 CTACATGTTGGATCACTTTCATATGTA 57.454 33.333 2.30 0.00 0.00 2.29
37 38 8.049117 ACATGTTGGATCACTTTCATATGTACT 58.951 33.333 1.90 0.00 0.00 2.73
39 40 8.492673 TGTTGGATCACTTTCATATGTACTTC 57.507 34.615 1.90 0.00 0.00 3.01
40 41 8.321353 TGTTGGATCACTTTCATATGTACTTCT 58.679 33.333 1.90 0.00 0.00 2.85
41 42 8.821894 GTTGGATCACTTTCATATGTACTTCTC 58.178 37.037 1.90 0.00 0.00 2.87
42 43 8.311395 TGGATCACTTTCATATGTACTTCTCT 57.689 34.615 1.90 0.00 0.00 3.10
43 44 8.762645 TGGATCACTTTCATATGTACTTCTCTT 58.237 33.333 1.90 0.00 0.00 2.85
44 45 9.255304 GGATCACTTTCATATGTACTTCTCTTC 57.745 37.037 1.90 0.00 0.00 2.87
45 46 9.809096 GATCACTTTCATATGTACTTCTCTTCA 57.191 33.333 1.90 0.00 0.00 3.02
47 48 9.645059 TCACTTTCATATGTACTTCTCTTCAAG 57.355 33.333 1.90 0.00 0.00 3.02
48 49 9.429359 CACTTTCATATGTACTTCTCTTCAAGT 57.571 33.333 1.90 0.00 39.94 3.16
49 50 9.646427 ACTTTCATATGTACTTCTCTTCAAGTC 57.354 33.333 1.90 0.00 37.75 3.01
50 51 9.868277 CTTTCATATGTACTTCTCTTCAAGTCT 57.132 33.333 1.90 0.00 37.75 3.24
52 53 9.862371 TTCATATGTACTTCTCTTCAAGTCTTC 57.138 33.333 1.90 0.00 37.75 2.87
58 59 5.237048 ACTTCTCTTCAAGTCTTCATGAGC 58.763 41.667 0.00 0.00 30.25 4.26
69 70 2.046988 CATGAGCCACGAGTGCCA 60.047 61.111 0.00 0.00 0.00 4.92
73 74 0.537143 TGAGCCACGAGTGCCATTTT 60.537 50.000 0.00 0.00 0.00 1.82
94 95 4.840005 GTGCTGGTCCCGCTAGGC 62.840 72.222 6.84 0.00 35.76 3.93
102 103 4.537433 CCCGCTAGGCCTCAGCAC 62.537 72.222 24.67 7.44 42.56 4.40
106 107 2.103143 CTAGGCCTCAGCACGACG 59.897 66.667 9.68 0.00 42.56 5.12
108 109 1.729470 CTAGGCCTCAGCACGACGAT 61.729 60.000 9.68 0.00 42.56 3.73
111 112 1.298859 GGCCTCAGCACGACGATTTT 61.299 55.000 0.00 0.00 42.56 1.82
113 114 0.721718 CCTCAGCACGACGATTTTCC 59.278 55.000 0.00 0.00 0.00 3.13
116 117 0.366871 CAGCACGACGATTTTCCGAG 59.633 55.000 0.00 0.00 0.00 4.63
140 141 5.642063 GTGTCTAGCACAATAAGTTTAGCCA 59.358 40.000 11.05 0.00 46.91 4.75
154 155 5.819825 GTTTAGCCAAACTCTATTGAGGG 57.180 43.478 9.03 1.86 44.29 4.30
160 161 2.500098 CAAACTCTATTGAGGGACGGGA 59.500 50.000 9.03 0.00 44.29 5.14
167 168 2.764128 GAGGGACGGGAGATGGCA 60.764 66.667 0.00 0.00 0.00 4.92
189 191 1.433534 GGCATGCCTATAGTTCGCTC 58.566 55.000 29.98 0.00 0.00 5.03
213 215 1.012486 GCTTGTAGTCGTCGTTGGGG 61.012 60.000 0.00 0.00 0.00 4.96
348 351 6.262273 CGGGAGGAGATAAGATAAGAGATAGC 59.738 46.154 0.00 0.00 0.00 2.97
354 357 8.999431 GGAGATAAGATAAGAGATAGCGATAGG 58.001 40.741 0.00 0.00 0.00 2.57
355 358 9.772973 GAGATAAGATAAGAGATAGCGATAGGA 57.227 37.037 0.00 0.00 0.00 2.94
359 362 8.815565 AAGATAAGAGATAGCGATAGGAATGA 57.184 34.615 0.00 0.00 0.00 2.57
411 415 0.883153 GGCATGCTTGTCACACATGA 59.117 50.000 18.92 0.00 43.04 3.07
630 1818 2.607750 ACCTGACGCCATGGGACT 60.608 61.111 15.13 0.00 0.00 3.85
811 2032 2.775856 GCCTGACGATCTCGCTCCA 61.776 63.158 0.00 0.00 44.43 3.86
812 2033 1.064946 CCTGACGATCTCGCTCCAC 59.935 63.158 0.00 0.00 44.43 4.02
813 2034 1.380403 CCTGACGATCTCGCTCCACT 61.380 60.000 0.00 0.00 44.43 4.00
814 2035 0.248417 CTGACGATCTCGCTCCACTG 60.248 60.000 0.00 0.00 44.43 3.66
815 2036 1.064946 GACGATCTCGCTCCACTGG 59.935 63.158 0.00 0.00 44.43 4.00
816 2037 2.279120 CGATCTCGCTCCACTGGC 60.279 66.667 0.00 0.00 0.00 4.85
817 2038 2.107953 GATCTCGCTCCACTGGCC 59.892 66.667 0.00 0.00 0.00 5.36
818 2039 2.685017 ATCTCGCTCCACTGGCCA 60.685 61.111 4.71 4.71 0.00 5.36
1086 2346 4.310769 AGATCAACCGAAACAAGAGTGAG 58.689 43.478 0.00 0.00 0.00 3.51
1122 2394 1.271054 CCAGTTGAGAGGTGGTTCCAG 60.271 57.143 0.00 0.00 39.02 3.86
1926 4671 2.045634 GCATGGAGCTGCAGGTGA 60.046 61.111 25.60 10.07 41.87 4.02
1978 4723 1.809869 CCGACGAAGAGCTGATGGA 59.190 57.895 0.00 0.00 0.00 3.41
1984 4729 0.179097 GAAGAGCTGATGGACCCGTC 60.179 60.000 0.00 1.35 0.00 4.79
2049 4821 1.663379 CTCGCCGATGGAGGTGTGTA 61.663 60.000 0.00 0.00 42.18 2.90
2121 4908 3.507622 TGTATCCAGTCAGTCAGTCAGTG 59.492 47.826 0.00 0.00 0.00 3.66
2129 4916 2.620585 TCAGTCAGTCAGTGAGTCAGTG 59.379 50.000 20.14 20.14 36.62 3.66
2131 4918 3.067320 CAGTCAGTCAGTGAGTCAGTGAA 59.933 47.826 28.15 13.41 44.06 3.18
2133 4920 4.343526 AGTCAGTCAGTGAGTCAGTGAATT 59.656 41.667 28.15 18.13 44.06 2.17
2149 4940 3.725740 GTGAATTGTGTCTGCAAGTTTCG 59.274 43.478 0.00 0.00 33.76 3.46
2171 4976 3.719173 TCGGTTTGTTGTTCCATTTCC 57.281 42.857 0.00 0.00 0.00 3.13
2174 4979 3.429547 CGGTTTGTTGTTCCATTTCCACA 60.430 43.478 0.00 0.00 0.00 4.17
2182 4987 5.132897 TGTTCCATTTCCACATTTGCTAC 57.867 39.130 0.00 0.00 0.00 3.58
2227 5032 1.884926 GCTGGAGCTCGTACCATGC 60.885 63.158 7.83 3.13 38.21 4.06
2230 5035 0.179076 TGGAGCTCGTACCATGCATG 60.179 55.000 20.19 20.19 0.00 4.06
2231 5036 0.179073 GGAGCTCGTACCATGCATGT 60.179 55.000 24.58 15.01 0.00 3.21
2232 5037 1.068588 GGAGCTCGTACCATGCATGTA 59.931 52.381 24.58 14.05 0.00 2.29
2233 5038 2.128035 GAGCTCGTACCATGCATGTAC 58.872 52.381 24.58 22.08 0.00 2.90
2234 5039 1.757118 AGCTCGTACCATGCATGTACT 59.243 47.619 24.58 9.62 0.00 2.73
2235 5040 2.128035 GCTCGTACCATGCATGTACTC 58.872 52.381 24.58 11.18 0.00 2.59
2236 5041 2.481276 GCTCGTACCATGCATGTACTCA 60.481 50.000 24.58 13.74 0.00 3.41
2237 5042 3.780902 CTCGTACCATGCATGTACTCAA 58.219 45.455 24.58 12.93 0.00 3.02
2238 5043 3.780902 TCGTACCATGCATGTACTCAAG 58.219 45.455 24.58 10.29 0.00 3.02
2239 5044 3.445805 TCGTACCATGCATGTACTCAAGA 59.554 43.478 24.58 14.82 0.00 3.02
2240 5045 3.551890 CGTACCATGCATGTACTCAAGAC 59.448 47.826 24.58 9.45 0.00 3.01
2243 5048 2.353889 CCATGCATGTACTCAAGACAGC 59.646 50.000 24.58 0.00 0.00 4.40
2244 5049 2.837532 TGCATGTACTCAAGACAGCA 57.162 45.000 0.00 0.00 32.36 4.41
2245 5050 3.339253 TGCATGTACTCAAGACAGCAT 57.661 42.857 0.00 0.00 30.92 3.79
2318 6014 2.434884 CTGCATATAGGCCGGCCG 60.435 66.667 38.88 25.44 41.95 6.13
2351 6047 1.002430 TCTCTAGCACACTGCCCAAAG 59.998 52.381 0.00 0.00 46.52 2.77
2567 6367 5.075493 AGAGTTGAGGAAGAATTGCAATGT 58.925 37.500 13.82 3.19 39.77 2.71
2569 6369 4.586001 AGTTGAGGAAGAATTGCAATGTGT 59.414 37.500 13.82 0.00 39.77 3.72
2571 6371 3.890756 TGAGGAAGAATTGCAATGTGTGT 59.109 39.130 13.82 0.00 39.77 3.72
2573 6373 3.638160 AGGAAGAATTGCAATGTGTGTGT 59.362 39.130 13.82 0.00 39.77 3.72
2574 6374 3.737266 GGAAGAATTGCAATGTGTGTGTG 59.263 43.478 13.82 0.00 35.98 3.82
2575 6375 4.362279 GAAGAATTGCAATGTGTGTGTGT 58.638 39.130 13.82 0.00 0.00 3.72
2576 6376 3.708890 AGAATTGCAATGTGTGTGTGTG 58.291 40.909 13.82 0.00 0.00 3.82
2577 6377 3.130869 AGAATTGCAATGTGTGTGTGTGT 59.869 39.130 13.82 0.00 0.00 3.72
2578 6378 2.274920 TTGCAATGTGTGTGTGTGTG 57.725 45.000 0.00 0.00 0.00 3.82
2579 6379 1.172175 TGCAATGTGTGTGTGTGTGT 58.828 45.000 0.00 0.00 0.00 3.72
2580 6380 1.135460 TGCAATGTGTGTGTGTGTGTG 60.135 47.619 0.00 0.00 0.00 3.82
2581 6381 1.135431 GCAATGTGTGTGTGTGTGTGT 60.135 47.619 0.00 0.00 0.00 3.72
2582 6382 2.517935 CAATGTGTGTGTGTGTGTGTG 58.482 47.619 0.00 0.00 0.00 3.82
2583 6383 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
2599 6399 3.326297 TGTGTGTGAGAGAGAGAGAGAGA 59.674 47.826 0.00 0.00 0.00 3.10
2691 6491 2.224281 GCTGGTGGTCATATCCGATCAA 60.224 50.000 0.00 0.00 0.00 2.57
2701 6501 5.003160 TCATATCCGATCAAATTGGCGAAT 58.997 37.500 9.87 0.00 33.54 3.34
2709 6509 1.994779 CAAATTGGCGAATGTCTTGGC 59.005 47.619 0.00 0.00 35.55 4.52
2736 6536 5.012893 GTGTTTGATCTGGGAGGATTTCTT 58.987 41.667 0.00 0.00 0.00 2.52
2754 6554 9.007901 GGATTTCTTCTTCCAATATGACTATGG 57.992 37.037 0.00 0.00 31.99 2.74
2759 6559 6.025749 TCTTCCAATATGACTATGGTAGCG 57.974 41.667 0.00 0.00 0.00 4.26
2769 6569 2.494445 TGGTAGCGCCAGTCGATG 59.506 61.111 2.29 0.00 43.61 3.84
2800 6600 0.392998 CAAGGTTGCGGGATGTAGCT 60.393 55.000 0.00 0.00 0.00 3.32
2803 6603 1.819632 GTTGCGGGATGTAGCTGGG 60.820 63.158 0.00 0.00 0.00 4.45
2804 6604 2.297895 TTGCGGGATGTAGCTGGGT 61.298 57.895 0.00 0.00 0.00 4.51
2805 6605 2.203070 GCGGGATGTAGCTGGGTG 60.203 66.667 0.00 0.00 0.00 4.61
2806 6606 3.031417 GCGGGATGTAGCTGGGTGT 62.031 63.158 0.00 0.00 0.00 4.16
2807 6607 1.144057 CGGGATGTAGCTGGGTGTC 59.856 63.158 0.00 0.00 0.00 3.67
2808 6608 1.613317 CGGGATGTAGCTGGGTGTCA 61.613 60.000 0.00 0.00 0.00 3.58
2809 6609 0.179000 GGGATGTAGCTGGGTGTCAG 59.821 60.000 0.00 0.00 46.03 3.51
2810 6610 0.179000 GGATGTAGCTGGGTGTCAGG 59.821 60.000 0.00 0.00 43.54 3.86
2811 6611 1.195115 GATGTAGCTGGGTGTCAGGA 58.805 55.000 0.00 0.00 43.54 3.86
2812 6612 0.905357 ATGTAGCTGGGTGTCAGGAC 59.095 55.000 0.00 0.00 43.54 3.85
2813 6613 1.192146 TGTAGCTGGGTGTCAGGACC 61.192 60.000 0.00 0.00 43.54 4.46
2819 6619 3.400188 GGTGTCAGGACCCCGATT 58.600 61.111 0.00 0.00 0.00 3.34
2820 6620 1.221021 GGTGTCAGGACCCCGATTC 59.779 63.158 0.00 0.00 0.00 2.52
2821 6621 1.265454 GGTGTCAGGACCCCGATTCT 61.265 60.000 0.00 0.00 0.00 2.40
2822 6622 1.481871 GTGTCAGGACCCCGATTCTA 58.518 55.000 0.00 0.00 0.00 2.10
2823 6623 1.409427 GTGTCAGGACCCCGATTCTAG 59.591 57.143 0.00 0.00 0.00 2.43
2824 6624 1.041437 GTCAGGACCCCGATTCTAGG 58.959 60.000 0.00 0.00 0.00 3.02
2825 6625 0.635009 TCAGGACCCCGATTCTAGGT 59.365 55.000 0.00 0.00 36.31 3.08
2829 6629 3.703804 ACCCCGATTCTAGGTCACA 57.296 52.632 0.00 0.00 0.00 3.58
2830 6630 2.176247 ACCCCGATTCTAGGTCACAT 57.824 50.000 0.00 0.00 0.00 3.21
2831 6631 2.040178 ACCCCGATTCTAGGTCACATC 58.960 52.381 0.00 0.00 0.00 3.06
2832 6632 1.000163 CCCCGATTCTAGGTCACATCG 60.000 57.143 0.00 0.00 38.59 3.84
2833 6633 1.954382 CCCGATTCTAGGTCACATCGA 59.046 52.381 2.06 0.00 40.83 3.59
2834 6634 2.558795 CCCGATTCTAGGTCACATCGAT 59.441 50.000 0.00 0.00 40.83 3.59
2835 6635 3.366476 CCCGATTCTAGGTCACATCGATC 60.366 52.174 0.00 0.00 40.83 3.69
2836 6636 3.366476 CCGATTCTAGGTCACATCGATCC 60.366 52.174 0.00 0.00 40.83 3.36
2837 6637 3.253432 CGATTCTAGGTCACATCGATCCA 59.747 47.826 0.00 0.00 40.83 3.41
2838 6638 4.614764 CGATTCTAGGTCACATCGATCCAG 60.615 50.000 0.00 0.00 40.83 3.86
2839 6639 1.957177 TCTAGGTCACATCGATCCAGC 59.043 52.381 0.00 0.00 0.00 4.85
2840 6640 1.683385 CTAGGTCACATCGATCCAGCA 59.317 52.381 0.00 0.00 0.00 4.41
2841 6641 1.126488 AGGTCACATCGATCCAGCAT 58.874 50.000 0.00 0.00 0.00 3.79
2842 6642 1.202615 AGGTCACATCGATCCAGCATG 60.203 52.381 0.00 0.00 0.00 4.06
2843 6643 1.473965 GGTCACATCGATCCAGCATGT 60.474 52.381 0.00 0.00 0.00 3.21
2844 6644 2.224042 GGTCACATCGATCCAGCATGTA 60.224 50.000 0.00 0.00 0.00 2.29
2845 6645 3.457234 GTCACATCGATCCAGCATGTAA 58.543 45.455 0.00 0.00 0.00 2.41
2846 6646 3.246226 GTCACATCGATCCAGCATGTAAC 59.754 47.826 0.00 0.00 0.00 2.50
2847 6647 3.118811 TCACATCGATCCAGCATGTAACA 60.119 43.478 0.00 0.00 0.00 2.41
2848 6648 3.001634 CACATCGATCCAGCATGTAACAC 59.998 47.826 0.00 0.00 0.00 3.32
2849 6649 3.197265 CATCGATCCAGCATGTAACACA 58.803 45.455 0.00 0.00 0.00 3.72
2850 6650 3.541996 TCGATCCAGCATGTAACACAT 57.458 42.857 0.00 0.00 39.91 3.21
2851 6651 3.457234 TCGATCCAGCATGTAACACATC 58.543 45.455 0.00 0.00 36.53 3.06
2852 6652 3.118811 TCGATCCAGCATGTAACACATCA 60.119 43.478 0.00 0.00 36.53 3.07
2853 6653 3.811497 CGATCCAGCATGTAACACATCAT 59.189 43.478 0.00 0.00 36.53 2.45
2854 6654 4.990426 CGATCCAGCATGTAACACATCATA 59.010 41.667 0.00 0.00 36.53 2.15
2855 6655 5.640783 CGATCCAGCATGTAACACATCATAT 59.359 40.000 0.00 0.00 36.53 1.78
2856 6656 6.183360 CGATCCAGCATGTAACACATCATATC 60.183 42.308 0.00 0.00 36.53 1.63
2857 6657 5.927819 TCCAGCATGTAACACATCATATCA 58.072 37.500 0.00 0.00 36.53 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.754618 GTGATCCAACATGTAGACACACAA 59.245 41.667 20.42 0.00 37.54 3.33
4 5 4.890158 AGTGATCCAACATGTAGACACA 57.110 40.909 20.58 13.60 39.52 3.72
5 6 5.700832 TGAAAGTGATCCAACATGTAGACAC 59.299 40.000 0.00 10.20 0.00 3.67
8 9 8.267183 ACATATGAAAGTGATCCAACATGTAGA 58.733 33.333 10.38 0.00 0.00 2.59
9 10 8.442632 ACATATGAAAGTGATCCAACATGTAG 57.557 34.615 10.38 0.00 0.00 2.74
10 11 9.325198 GTACATATGAAAGTGATCCAACATGTA 57.675 33.333 10.38 0.00 0.00 2.29
11 12 8.049117 AGTACATATGAAAGTGATCCAACATGT 58.951 33.333 10.38 0.00 0.00 3.21
13 14 9.113838 GAAGTACATATGAAAGTGATCCAACAT 57.886 33.333 10.38 0.00 0.00 2.71
14 15 8.321353 AGAAGTACATATGAAAGTGATCCAACA 58.679 33.333 10.38 0.00 0.00 3.33
15 16 8.723942 AGAAGTACATATGAAAGTGATCCAAC 57.276 34.615 10.38 0.00 0.00 3.77
16 17 8.762645 AGAGAAGTACATATGAAAGTGATCCAA 58.237 33.333 10.38 0.00 0.00 3.53
18 19 9.255304 GAAGAGAAGTACATATGAAAGTGATCC 57.745 37.037 10.38 0.00 0.00 3.36
19 20 9.809096 TGAAGAGAAGTACATATGAAAGTGATC 57.191 33.333 10.38 0.00 0.00 2.92
21 22 9.645059 CTTGAAGAGAAGTACATATGAAAGTGA 57.355 33.333 10.38 0.00 0.00 3.41
22 23 9.429359 ACTTGAAGAGAAGTACATATGAAAGTG 57.571 33.333 10.38 0.00 34.29 3.16
23 24 9.646427 GACTTGAAGAGAAGTACATATGAAAGT 57.354 33.333 10.38 0.00 36.27 2.66
27 28 9.025041 TGAAGACTTGAAGAGAAGTACATATGA 57.975 33.333 10.38 0.00 36.27 2.15
28 29 9.814899 ATGAAGACTTGAAGAGAAGTACATATG 57.185 33.333 0.00 0.00 36.27 1.78
29 30 9.814899 CATGAAGACTTGAAGAGAAGTACATAT 57.185 33.333 0.00 0.00 36.27 1.78
30 31 9.025041 TCATGAAGACTTGAAGAGAAGTACATA 57.975 33.333 0.00 0.00 36.27 2.29
31 32 7.901029 TCATGAAGACTTGAAGAGAAGTACAT 58.099 34.615 0.00 0.00 36.27 2.29
32 33 7.290110 TCATGAAGACTTGAAGAGAAGTACA 57.710 36.000 0.00 0.00 36.27 2.90
34 35 6.393990 GCTCATGAAGACTTGAAGAGAAGTA 58.606 40.000 10.53 0.00 36.27 2.24
35 36 5.237048 GCTCATGAAGACTTGAAGAGAAGT 58.763 41.667 10.53 0.00 38.94 3.01
37 38 4.040829 TGGCTCATGAAGACTTGAAGAGAA 59.959 41.667 10.53 0.00 32.31 2.87
39 40 3.683822 GTGGCTCATGAAGACTTGAAGAG 59.316 47.826 0.00 2.93 32.31 2.85
40 41 3.668447 GTGGCTCATGAAGACTTGAAGA 58.332 45.455 0.00 0.00 32.31 2.87
41 42 2.414481 CGTGGCTCATGAAGACTTGAAG 59.586 50.000 0.00 0.00 32.31 3.02
42 43 2.037121 TCGTGGCTCATGAAGACTTGAA 59.963 45.455 0.00 0.00 32.31 2.69
43 44 1.618343 TCGTGGCTCATGAAGACTTGA 59.382 47.619 0.00 0.00 32.31 3.02
44 45 1.998315 CTCGTGGCTCATGAAGACTTG 59.002 52.381 0.00 0.00 32.31 3.16
45 46 1.620819 ACTCGTGGCTCATGAAGACTT 59.379 47.619 0.00 0.00 32.31 3.01
46 47 1.067283 CACTCGTGGCTCATGAAGACT 60.067 52.381 0.00 0.00 32.31 3.24
47 48 1.354040 CACTCGTGGCTCATGAAGAC 58.646 55.000 0.00 0.00 0.00 3.01
48 49 0.390340 GCACTCGTGGCTCATGAAGA 60.390 55.000 0.00 0.00 0.00 2.87
49 50 2.084844 GCACTCGTGGCTCATGAAG 58.915 57.895 0.00 0.00 0.00 3.02
50 51 4.284123 GCACTCGTGGCTCATGAA 57.716 55.556 0.00 0.00 0.00 2.57
58 59 0.039256 CACCAAAATGGCACTCGTGG 60.039 55.000 0.00 0.00 42.67 4.94
69 70 1.178534 CGGGACCAGCACACCAAAAT 61.179 55.000 0.00 0.00 0.00 1.82
90 91 1.320344 AATCGTCGTGCTGAGGCCTA 61.320 55.000 4.42 0.00 37.74 3.93
94 95 0.721718 GGAAAATCGTCGTGCTGAGG 59.278 55.000 0.00 0.00 0.00 3.86
102 103 1.978542 AGACACTCGGAAAATCGTCG 58.021 50.000 0.00 0.00 0.00 5.12
134 135 4.382685 CGTCCCTCAATAGAGTTTGGCTAA 60.383 45.833 0.00 0.00 40.40 3.09
140 141 2.766828 CTCCCGTCCCTCAATAGAGTTT 59.233 50.000 0.00 0.00 40.40 2.66
148 149 2.367202 GCCATCTCCCGTCCCTCAA 61.367 63.158 0.00 0.00 0.00 3.02
152 153 4.554036 GCTGCCATCTCCCGTCCC 62.554 72.222 0.00 0.00 0.00 4.46
153 154 4.899239 CGCTGCCATCTCCCGTCC 62.899 72.222 0.00 0.00 0.00 4.79
154 155 4.899239 CCGCTGCCATCTCCCGTC 62.899 72.222 0.00 0.00 0.00 4.79
167 168 0.319900 CGAACTATAGGCATGCCGCT 60.320 55.000 30.50 22.95 41.91 5.52
189 191 0.039437 ACGACGACTACAAGCACTGG 60.039 55.000 0.00 0.00 0.00 4.00
213 215 7.961325 AAATTACATTCATGTTTGTGAACCC 57.039 32.000 11.79 0.00 40.60 4.11
242 244 9.686683 ATAGCAGTATAAGGAACACAGAAAATT 57.313 29.630 0.00 0.00 0.00 1.82
244 246 8.318412 TCATAGCAGTATAAGGAACACAGAAAA 58.682 33.333 0.00 0.00 0.00 2.29
303 305 1.668826 CCTATATGCCCCAGCCCTAA 58.331 55.000 0.00 0.00 38.69 2.69
304 306 0.914417 GCCTATATGCCCCAGCCCTA 60.914 60.000 0.00 0.00 38.69 3.53
348 351 9.979270 GTGCTTCAATAATAATCATTCCTATCG 57.021 33.333 0.00 0.00 0.00 2.92
354 357 6.360681 GGCGTGTGCTTCAATAATAATCATTC 59.639 38.462 0.00 0.00 42.25 2.67
355 358 6.208644 GGCGTGTGCTTCAATAATAATCATT 58.791 36.000 0.00 0.00 42.25 2.57
359 362 3.003275 CGGGCGTGTGCTTCAATAATAAT 59.997 43.478 0.00 0.00 42.25 1.28
363 366 0.604243 ACGGGCGTGTGCTTCAATAA 60.604 50.000 0.00 0.00 42.25 1.40
411 415 1.279025 TGGGGAGGCCTTTATTCGCT 61.279 55.000 6.77 0.00 0.00 4.93
1070 2318 4.466370 TGGATATCTCACTCTTGTTTCGGT 59.534 41.667 2.05 0.00 0.00 4.69
1086 2346 3.044305 GGCGCCGCTGTGGATATC 61.044 66.667 12.58 0.00 42.00 1.63
1288 2566 2.108566 CTGCAGCGAGGAGATGGG 59.891 66.667 0.00 0.00 38.04 4.00
1610 2900 4.867599 GATCCCCGTCGCGGTCAC 62.868 72.222 6.13 0.00 46.80 3.67
1984 4729 1.360551 CGCCACCATCTCTAGACCG 59.639 63.158 0.00 0.00 0.00 4.79
2121 4908 3.133691 TGCAGACACAATTCACTGACTC 58.866 45.455 0.00 0.00 32.90 3.36
2129 4916 4.209452 TCGAAACTTGCAGACACAATTC 57.791 40.909 0.00 0.00 0.00 2.17
2131 4918 3.120546 CGATCGAAACTTGCAGACACAAT 60.121 43.478 10.26 0.00 0.00 2.71
2133 4920 1.792367 CGATCGAAACTTGCAGACACA 59.208 47.619 10.26 0.00 0.00 3.72
2171 4976 9.289303 GTGGAAATAACAATAGTAGCAAATGTG 57.711 33.333 0.00 0.00 0.00 3.21
2182 4987 9.740239 CAAGATTGGATGTGGAAATAACAATAG 57.260 33.333 0.00 0.00 0.00 1.73
2227 5032 2.353889 GCCATGCTGTCTTGAGTACATG 59.646 50.000 0.00 0.00 35.73 3.21
2230 5035 2.099141 TGCCATGCTGTCTTGAGTAC 57.901 50.000 0.00 0.00 0.00 2.73
2231 5036 2.635714 CATGCCATGCTGTCTTGAGTA 58.364 47.619 0.00 0.00 0.00 2.59
2232 5037 1.460504 CATGCCATGCTGTCTTGAGT 58.539 50.000 0.00 0.00 0.00 3.41
2233 5038 0.738975 CCATGCCATGCTGTCTTGAG 59.261 55.000 0.00 0.00 0.00 3.02
2234 5039 0.681887 CCCATGCCATGCTGTCTTGA 60.682 55.000 0.00 0.00 0.00 3.02
2235 5040 1.813859 CCCATGCCATGCTGTCTTG 59.186 57.895 0.00 0.00 0.00 3.02
2236 5041 2.056223 GCCCATGCCATGCTGTCTT 61.056 57.895 0.00 0.00 0.00 3.01
2237 5042 1.638679 TAGCCCATGCCATGCTGTCT 61.639 55.000 0.00 0.00 38.69 3.41
2238 5043 0.752743 TTAGCCCATGCCATGCTGTC 60.753 55.000 0.00 0.00 38.69 3.51
2239 5044 1.039233 GTTAGCCCATGCCATGCTGT 61.039 55.000 0.00 0.00 38.69 4.40
2240 5045 1.737816 GTTAGCCCATGCCATGCTG 59.262 57.895 0.00 0.00 38.69 4.41
2243 5048 2.592102 ATAGGTTAGCCCATGCCATG 57.408 50.000 0.00 0.00 38.69 3.66
2244 5049 4.740154 TTAATAGGTTAGCCCATGCCAT 57.260 40.909 0.00 0.00 38.69 4.40
2245 5050 4.740154 ATTAATAGGTTAGCCCATGCCA 57.260 40.909 0.00 0.00 38.69 4.92
2318 6014 6.647067 AGTGTGCTAGAGATAAAAAGTGTGAC 59.353 38.462 0.00 0.00 0.00 3.67
2351 6047 1.198713 TCTCTTGGAGGATGGAGCAC 58.801 55.000 0.00 0.00 0.00 4.40
2534 6326 8.655651 ATTCTTCCTCAACTCTTATTCGAATC 57.344 34.615 15.25 0.00 0.00 2.52
2567 6367 1.001406 TCTCACACACACACACACACA 59.999 47.619 0.00 0.00 0.00 3.72
2569 6369 1.548269 TCTCTCACACACACACACACA 59.452 47.619 0.00 0.00 0.00 3.72
2571 6371 2.099405 TCTCTCTCACACACACACACA 58.901 47.619 0.00 0.00 0.00 3.72
2573 6373 2.620585 CTCTCTCTCTCACACACACACA 59.379 50.000 0.00 0.00 0.00 3.72
2574 6374 2.881513 TCTCTCTCTCTCACACACACAC 59.118 50.000 0.00 0.00 0.00 3.82
2575 6375 3.145286 CTCTCTCTCTCTCACACACACA 58.855 50.000 0.00 0.00 0.00 3.72
2576 6376 3.407698 TCTCTCTCTCTCTCACACACAC 58.592 50.000 0.00 0.00 0.00 3.82
2577 6377 3.326297 TCTCTCTCTCTCTCTCACACACA 59.674 47.826 0.00 0.00 0.00 3.72
2578 6378 3.935203 CTCTCTCTCTCTCTCTCACACAC 59.065 52.174 0.00 0.00 0.00 3.82
2579 6379 3.837731 TCTCTCTCTCTCTCTCTCACACA 59.162 47.826 0.00 0.00 0.00 3.72
2580 6380 4.437239 CTCTCTCTCTCTCTCTCTCACAC 58.563 52.174 0.00 0.00 0.00 3.82
2581 6381 3.118629 GCTCTCTCTCTCTCTCTCTCACA 60.119 52.174 0.00 0.00 0.00 3.58
2582 6382 3.118629 TGCTCTCTCTCTCTCTCTCTCAC 60.119 52.174 0.00 0.00 0.00 3.51
2583 6383 3.106827 TGCTCTCTCTCTCTCTCTCTCA 58.893 50.000 0.00 0.00 0.00 3.27
2599 6399 1.629353 CATCCAGGCCAGATATGCTCT 59.371 52.381 5.01 0.00 33.14 4.09
2634 6434 2.590092 CCCCGATCCTCACAACCC 59.410 66.667 0.00 0.00 0.00 4.11
2636 6436 1.450312 CAGCCCCGATCCTCACAAC 60.450 63.158 0.00 0.00 0.00 3.32
2691 6491 0.532115 GGCCAAGACATTCGCCAATT 59.468 50.000 0.00 0.00 41.88 2.32
2701 6501 1.826054 CAAACACCCGGCCAAGACA 60.826 57.895 2.24 0.00 0.00 3.41
2709 6509 0.392998 CTCCCAGATCAAACACCCGG 60.393 60.000 0.00 0.00 0.00 5.73
2736 6536 5.566826 GCGCTACCATAGTCATATTGGAAGA 60.567 44.000 0.00 0.00 0.00 2.87
2741 6541 3.925379 TGGCGCTACCATAGTCATATTG 58.075 45.455 7.64 0.00 46.36 1.90
2768 6568 3.034721 CAACCTTGCTAGTACGAACCA 57.965 47.619 0.00 0.00 0.00 3.67
2803 6603 1.409427 CTAGAATCGGGGTCCTGACAC 59.591 57.143 0.00 0.00 33.73 3.67
2804 6604 1.688311 CCTAGAATCGGGGTCCTGACA 60.688 57.143 0.00 0.00 33.73 3.58
2805 6605 1.041437 CCTAGAATCGGGGTCCTGAC 58.959 60.000 0.00 0.00 33.73 3.51
2806 6606 0.635009 ACCTAGAATCGGGGTCCTGA 59.365 55.000 0.44 0.44 35.60 3.86
2807 6607 1.041437 GACCTAGAATCGGGGTCCTG 58.959 60.000 13.72 0.00 42.45 3.86
2808 6608 0.635009 TGACCTAGAATCGGGGTCCT 59.365 55.000 19.05 0.00 46.26 3.85
2809 6609 0.751452 GTGACCTAGAATCGGGGTCC 59.249 60.000 19.05 10.62 46.26 4.46
2810 6610 1.481871 TGTGACCTAGAATCGGGGTC 58.518 55.000 16.46 16.46 46.80 4.46
2811 6611 2.040178 GATGTGACCTAGAATCGGGGT 58.960 52.381 0.00 0.38 35.89 4.95
2812 6612 1.000163 CGATGTGACCTAGAATCGGGG 60.000 57.143 0.00 0.00 38.54 5.73
2813 6613 1.954382 TCGATGTGACCTAGAATCGGG 59.046 52.381 4.31 0.00 41.64 5.14
2814 6614 3.366476 GGATCGATGTGACCTAGAATCGG 60.366 52.174 0.54 0.00 41.64 4.18
2815 6615 3.253432 TGGATCGATGTGACCTAGAATCG 59.747 47.826 0.54 0.00 42.45 3.34
2816 6616 4.804108 CTGGATCGATGTGACCTAGAATC 58.196 47.826 0.54 0.00 0.00 2.52
2817 6617 3.006323 GCTGGATCGATGTGACCTAGAAT 59.994 47.826 0.54 0.00 0.00 2.40
2818 6618 2.362397 GCTGGATCGATGTGACCTAGAA 59.638 50.000 0.54 0.00 0.00 2.10
2819 6619 1.957177 GCTGGATCGATGTGACCTAGA 59.043 52.381 0.54 0.00 0.00 2.43
2820 6620 1.683385 TGCTGGATCGATGTGACCTAG 59.317 52.381 0.54 0.00 0.00 3.02
2821 6621 1.775385 TGCTGGATCGATGTGACCTA 58.225 50.000 0.54 0.00 0.00 3.08
2822 6622 1.126488 ATGCTGGATCGATGTGACCT 58.874 50.000 0.54 0.00 0.00 3.85
2823 6623 1.224075 CATGCTGGATCGATGTGACC 58.776 55.000 0.54 0.00 0.00 4.02
2824 6624 1.945387 ACATGCTGGATCGATGTGAC 58.055 50.000 0.54 0.00 0.00 3.67
2825 6625 3.118811 TGTTACATGCTGGATCGATGTGA 60.119 43.478 0.54 0.00 32.59 3.58
2826 6626 3.001634 GTGTTACATGCTGGATCGATGTG 59.998 47.826 0.54 0.00 32.59 3.21
2827 6627 3.198068 GTGTTACATGCTGGATCGATGT 58.802 45.455 0.54 0.00 34.68 3.06
2828 6628 3.197265 TGTGTTACATGCTGGATCGATG 58.803 45.455 0.54 0.00 0.00 3.84
2829 6629 3.541996 TGTGTTACATGCTGGATCGAT 57.458 42.857 0.00 0.00 0.00 3.59
2830 6630 3.118811 TGATGTGTTACATGCTGGATCGA 60.119 43.478 0.00 0.00 39.27 3.59
2831 6631 3.197265 TGATGTGTTACATGCTGGATCG 58.803 45.455 0.00 0.00 39.27 3.69
2832 6632 6.652062 TGATATGATGTGTTACATGCTGGATC 59.348 38.462 0.00 0.00 39.27 3.36
2833 6633 6.536447 TGATATGATGTGTTACATGCTGGAT 58.464 36.000 0.00 0.00 39.27 3.41
2834 6634 5.927819 TGATATGATGTGTTACATGCTGGA 58.072 37.500 0.00 0.00 39.27 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.