Multiple sequence alignment - TraesCS2A01G033300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G033300 chr2A 100.000 5436 0 0 1 5436 14959494 14954059 0.000000e+00 10039.0
1 TraesCS2A01G033300 chr2D 92.837 2443 104 27 901 3310 12870214 12867810 0.000000e+00 3476.0
2 TraesCS2A01G033300 chr2D 92.657 1321 61 13 3329 4643 12867820 12866530 0.000000e+00 1869.0
3 TraesCS2A01G033300 chr2D 82.801 564 40 25 4741 5257 12866453 12865900 8.300000e-123 451.0
4 TraesCS2A01G033300 chr2D 83.442 459 34 19 4703 5136 12789142 12788701 6.600000e-104 388.0
5 TraesCS2A01G033300 chr2D 86.969 353 19 12 119 451 12870912 12870567 6.650000e-99 372.0
6 TraesCS2A01G033300 chr2D 86.068 323 35 6 4322 4643 12789485 12789172 6.740000e-89 339.0
7 TraesCS2A01G033300 chr2D 95.455 154 7 0 486 639 12870570 12870417 4.210000e-61 246.0
8 TraesCS2A01G033300 chr2D 95.105 143 4 1 5121 5263 12788532 12788393 7.090000e-54 222.0
9 TraesCS2A01G033300 chr2D 94.203 69 4 0 637 705 36217003 36216935 7.450000e-19 106.0
10 TraesCS2A01G033300 chr2D 90.411 73 4 2 5364 5436 12788308 12788239 5.800000e-15 93.5
11 TraesCS2A01G033300 chr2B 88.492 2433 167 60 2675 5048 23543850 23541472 0.000000e+00 2837.0
12 TraesCS2A01G033300 chr2B 93.588 655 42 0 1636 2290 23544502 23543848 0.000000e+00 977.0
13 TraesCS2A01G033300 chr2B 89.688 320 16 5 906 1213 23545208 23544894 5.100000e-105 392.0
14 TraesCS2A01G033300 chr2B 81.571 331 29 15 5121 5436 23538527 23538214 1.510000e-60 244.0
15 TraesCS2A01G033300 chr7B 84.466 515 35 19 2274 2748 377594855 377594346 2.970000e-127 466.0
16 TraesCS2A01G033300 chr7B 92.754 69 5 0 637 705 290954729 290954661 3.460000e-17 100.0
17 TraesCS2A01G033300 chr5B 84.466 515 35 24 2274 2748 585013237 585012728 2.970000e-127 466.0
18 TraesCS2A01G033300 chrUn 83.977 518 38 19 2270 2748 12455936 12455425 6.420000e-124 455.0
19 TraesCS2A01G033300 chr4B 84.078 515 37 20 2274 2748 177225662 177225153 6.420000e-124 455.0
20 TraesCS2A01G033300 chr3A 83.268 514 42 18 2274 2748 361614342 361613834 3.010000e-117 433.0
21 TraesCS2A01G033300 chr3B 82.558 516 48 16 2271 2748 740858828 740859339 3.030000e-112 416.0
22 TraesCS2A01G033300 chr3B 92.754 69 5 0 637 705 452907135 452907203 3.460000e-17 100.0
23 TraesCS2A01G033300 chr7A 83.475 472 40 24 2274 2712 40833630 40833164 6.560000e-109 405.0
24 TraesCS2A01G033300 chr7A 92.754 69 5 0 637 705 653597046 653596978 3.460000e-17 100.0
25 TraesCS2A01G033300 chr3D 94.203 69 4 0 637 705 296544618 296544550 7.450000e-19 106.0
26 TraesCS2A01G033300 chr1B 94.203 69 4 0 637 705 10372082 10372150 7.450000e-19 106.0
27 TraesCS2A01G033300 chr7D 91.781 73 5 1 640 712 43196544 43196473 3.460000e-17 100.0
28 TraesCS2A01G033300 chr1D 92.754 69 5 0 637 705 456167576 456167644 3.460000e-17 100.0
29 TraesCS2A01G033300 chr1D 86.517 89 8 4 620 705 84712118 84712205 1.610000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G033300 chr2A 14954059 14959494 5435 True 10039.000 10039 100.00000 1 5436 1 chr2A.!!$R1 5435
1 TraesCS2A01G033300 chr2D 12865900 12870912 5012 True 1282.800 3476 90.14380 119 5257 5 chr2D.!!$R3 5138
2 TraesCS2A01G033300 chr2D 12788239 12789485 1246 True 260.625 388 88.75650 4322 5436 4 chr2D.!!$R2 1114
3 TraesCS2A01G033300 chr2B 23538214 23545208 6994 True 1112.500 2837 88.33475 906 5436 4 chr2B.!!$R1 4530
4 TraesCS2A01G033300 chr7B 377594346 377594855 509 True 466.000 466 84.46600 2274 2748 1 chr7B.!!$R2 474
5 TraesCS2A01G033300 chr5B 585012728 585013237 509 True 466.000 466 84.46600 2274 2748 1 chr5B.!!$R1 474
6 TraesCS2A01G033300 chrUn 12455425 12455936 511 True 455.000 455 83.97700 2270 2748 1 chrUn.!!$R1 478
7 TraesCS2A01G033300 chr4B 177225153 177225662 509 True 455.000 455 84.07800 2274 2748 1 chr4B.!!$R1 474
8 TraesCS2A01G033300 chr3A 361613834 361614342 508 True 433.000 433 83.26800 2274 2748 1 chr3A.!!$R1 474
9 TraesCS2A01G033300 chr3B 740858828 740859339 511 False 416.000 416 82.55800 2271 2748 1 chr3B.!!$F2 477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.036765 TCTGTTGTAGCGGCCGAAAT 60.037 50.0 33.48 16.69 0.00 2.17 F
58 59 0.101759 CGGCCGAAATTCGAGTAGGA 59.898 55.0 24.07 0.00 43.74 2.94 F
469 493 0.107654 GATGGGAACGGAGAAGGGTG 60.108 60.0 0.00 0.00 0.00 4.61 F
959 1025 0.107897 TCGTCAACCCCGATCCAATG 60.108 55.0 0.00 0.00 0.00 2.82 F
1999 2127 0.108186 CCATCACAGCGAGCTAACCA 60.108 55.0 0.00 0.00 0.00 3.67 F
3305 3508 0.179029 AGTTTGGGCGTACAAGCACT 60.179 50.0 9.74 2.99 42.02 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 1787 0.729116 CGCATCGCTGTGGAAAGAAT 59.271 50.000 0.00 0.0 0.0 2.40 R
1782 1910 0.758734 CCTGGGCCGATGATGAGTAA 59.241 55.000 0.00 0.0 0.0 2.24 R
2349 2485 0.179084 CCACAATCGCGGACCATACT 60.179 55.000 6.13 0.0 0.0 2.12 R
2364 2500 3.998099 TGATTCAATTTTCGTGCCACA 57.002 38.095 0.00 0.0 0.0 4.17 R
3402 3605 2.031682 CCTGCACAACGAAGAGAAAAGG 60.032 50.000 0.00 0.0 0.0 3.11 R
5274 8493 0.104672 TGGACTGTGGAGAAAGGGGA 60.105 55.000 0.00 0.0 0.0 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.203928 GATGATCAAGACGGTGAGCG 58.796 55.000 1.13 1.13 36.71 5.03
20 21 0.532573 ATGATCAAGACGGTGAGCGT 59.467 50.000 10.29 10.29 36.71 5.07
21 22 0.109272 TGATCAAGACGGTGAGCGTC 60.109 55.000 27.42 27.42 36.71 5.19
22 23 1.134530 GATCAAGACGGTGAGCGTCG 61.135 60.000 27.95 16.89 40.84 5.12
23 24 3.470567 CAAGACGGTGAGCGTCGC 61.471 66.667 27.95 9.80 40.84 5.19
24 25 3.671411 AAGACGGTGAGCGTCGCT 61.671 61.111 27.95 21.92 43.88 4.93
25 26 3.898627 AAGACGGTGAGCGTCGCTG 62.899 63.158 27.16 12.82 39.88 5.18
33 34 3.369400 AGCGTCGCTGCTCTCTGT 61.369 61.111 21.02 0.00 42.95 3.41
34 35 2.431601 GCGTCGCTGCTCTCTGTT 60.432 61.111 10.68 0.00 0.00 3.16
35 36 2.724708 GCGTCGCTGCTCTCTGTTG 61.725 63.158 10.68 0.00 0.00 3.33
36 37 1.372251 CGTCGCTGCTCTCTGTTGT 60.372 57.895 0.00 0.00 0.00 3.32
37 38 0.109735 CGTCGCTGCTCTCTGTTGTA 60.110 55.000 0.00 0.00 0.00 2.41
38 39 1.623359 GTCGCTGCTCTCTGTTGTAG 58.377 55.000 0.00 0.00 0.00 2.74
39 40 0.109086 TCGCTGCTCTCTGTTGTAGC 60.109 55.000 0.00 0.00 38.29 3.58
40 41 2.367844 GCTGCTCTCTGTTGTAGCG 58.632 57.895 0.00 0.00 39.14 4.26
41 42 1.080995 GCTGCTCTCTGTTGTAGCGG 61.081 60.000 0.00 0.00 43.95 5.52
42 43 1.079819 TGCTCTCTGTTGTAGCGGC 60.080 57.895 0.00 0.00 39.14 6.53
43 44 1.811679 GCTCTCTGTTGTAGCGGCC 60.812 63.158 0.00 0.00 0.00 6.13
44 45 1.517257 CTCTCTGTTGTAGCGGCCG 60.517 63.158 24.05 24.05 0.00 6.13
45 46 1.934220 CTCTCTGTTGTAGCGGCCGA 61.934 60.000 33.48 5.65 0.00 5.54
46 47 1.080093 CTCTGTTGTAGCGGCCGAA 60.080 57.895 33.48 13.92 0.00 4.30
47 48 0.669318 CTCTGTTGTAGCGGCCGAAA 60.669 55.000 33.48 13.46 0.00 3.46
48 49 0.036765 TCTGTTGTAGCGGCCGAAAT 60.037 50.000 33.48 16.69 0.00 2.17
49 50 0.802494 CTGTTGTAGCGGCCGAAATT 59.198 50.000 33.48 13.37 0.00 1.82
50 51 0.800012 TGTTGTAGCGGCCGAAATTC 59.200 50.000 33.48 11.09 0.00 2.17
51 52 0.247537 GTTGTAGCGGCCGAAATTCG 60.248 55.000 33.48 8.62 40.07 3.34
52 53 0.390078 TTGTAGCGGCCGAAATTCGA 60.390 50.000 33.48 10.59 43.74 3.71
53 54 0.804544 TGTAGCGGCCGAAATTCGAG 60.805 55.000 33.48 8.14 43.74 4.04
54 55 0.804933 GTAGCGGCCGAAATTCGAGT 60.805 55.000 33.48 2.92 43.74 4.18
55 56 0.740149 TAGCGGCCGAAATTCGAGTA 59.260 50.000 33.48 1.89 43.74 2.59
56 57 0.527817 AGCGGCCGAAATTCGAGTAG 60.528 55.000 33.48 6.38 43.74 2.57
57 58 1.488261 GCGGCCGAAATTCGAGTAGG 61.488 60.000 33.48 0.38 43.74 3.18
58 59 0.101759 CGGCCGAAATTCGAGTAGGA 59.898 55.000 24.07 0.00 43.74 2.94
59 60 1.470285 CGGCCGAAATTCGAGTAGGAA 60.470 52.381 24.07 0.00 43.74 3.36
60 61 2.202566 GGCCGAAATTCGAGTAGGAAG 58.797 52.381 17.75 0.00 43.74 3.46
61 62 1.593469 GCCGAAATTCGAGTAGGAAGC 59.407 52.381 17.75 5.13 43.74 3.86
62 63 1.852895 CCGAAATTCGAGTAGGAAGCG 59.147 52.381 17.75 0.00 43.74 4.68
63 64 2.479049 CCGAAATTCGAGTAGGAAGCGA 60.479 50.000 17.75 0.00 43.74 4.93
64 65 3.372954 CGAAATTCGAGTAGGAAGCGAT 58.627 45.455 10.18 0.00 43.74 4.58
65 66 3.422546 CGAAATTCGAGTAGGAAGCGATC 59.577 47.826 10.18 0.00 43.74 3.69
66 67 2.690173 ATTCGAGTAGGAAGCGATCG 57.310 50.000 11.69 11.69 33.71 3.69
67 68 1.660167 TTCGAGTAGGAAGCGATCGA 58.340 50.000 21.57 0.00 40.34 3.59
68 69 1.880271 TCGAGTAGGAAGCGATCGAT 58.120 50.000 21.57 10.64 37.48 3.59
69 70 1.799403 TCGAGTAGGAAGCGATCGATC 59.201 52.381 21.57 15.68 37.48 3.69
70 71 1.135916 CGAGTAGGAAGCGATCGATCC 60.136 57.143 24.80 24.80 35.47 3.36
71 72 1.200484 GAGTAGGAAGCGATCGATCCC 59.800 57.143 27.08 17.67 33.55 3.85
72 73 1.202952 AGTAGGAAGCGATCGATCCCT 60.203 52.381 27.08 23.34 33.55 4.20
73 74 1.068194 GTAGGAAGCGATCGATCCCTG 60.068 57.143 22.29 11.52 33.55 4.45
74 75 1.666234 GGAAGCGATCGATCCCTGC 60.666 63.158 21.57 14.27 0.00 4.85
75 76 1.068083 GAAGCGATCGATCCCTGCA 59.932 57.895 21.57 0.00 0.00 4.41
76 77 0.943359 GAAGCGATCGATCCCTGCAG 60.943 60.000 21.57 6.78 0.00 4.41
77 78 2.356793 GCGATCGATCCCTGCAGG 60.357 66.667 26.87 26.87 0.00 4.85
78 79 3.133014 CGATCGATCCCTGCAGGT 58.867 61.111 30.63 14.26 36.75 4.00
79 80 1.300465 CGATCGATCCCTGCAGGTG 60.300 63.158 30.63 21.43 36.75 4.00
80 81 1.738346 CGATCGATCCCTGCAGGTGA 61.738 60.000 30.63 25.59 36.75 4.02
81 82 0.683973 GATCGATCCCTGCAGGTGAT 59.316 55.000 30.63 28.63 36.75 3.06
82 83 1.071385 GATCGATCCCTGCAGGTGATT 59.929 52.381 30.63 16.84 36.75 2.57
83 84 0.465705 TCGATCCCTGCAGGTGATTC 59.534 55.000 30.63 20.95 36.75 2.52
84 85 0.533755 CGATCCCTGCAGGTGATTCC 60.534 60.000 30.63 18.42 36.75 3.01
86 87 0.842635 ATCCCTGCAGGTGATTCCTC 59.157 55.000 30.63 0.00 46.24 3.71
87 88 1.153289 CCCTGCAGGTGATTCCTCG 60.153 63.158 30.63 8.72 46.24 4.63
88 89 1.153289 CCTGCAGGTGATTCCTCGG 60.153 63.158 25.53 0.00 46.24 4.63
89 90 1.153289 CTGCAGGTGATTCCTCGGG 60.153 63.158 5.57 0.00 46.24 5.14
90 91 2.514824 GCAGGTGATTCCTCGGGC 60.515 66.667 0.00 0.00 46.24 6.13
91 92 2.202932 CAGGTGATTCCTCGGGCG 60.203 66.667 0.00 0.00 46.24 6.13
92 93 2.363795 AGGTGATTCCTCGGGCGA 60.364 61.111 0.00 0.00 44.42 5.54
93 94 1.987855 AGGTGATTCCTCGGGCGAA 60.988 57.895 0.00 0.00 44.42 4.70
94 95 1.521681 GGTGATTCCTCGGGCGAAG 60.522 63.158 0.00 0.00 0.00 3.79
95 96 1.521681 GTGATTCCTCGGGCGAAGG 60.522 63.158 0.00 0.00 0.00 3.46
106 107 2.174349 GCGAAGGCAAGCAAGACG 59.826 61.111 0.00 0.00 39.62 4.18
107 108 2.863153 CGAAGGCAAGCAAGACGG 59.137 61.111 0.00 0.00 0.00 4.79
108 109 2.680913 CGAAGGCAAGCAAGACGGG 61.681 63.158 0.00 0.00 0.00 5.28
109 110 1.600916 GAAGGCAAGCAAGACGGGT 60.601 57.895 0.00 0.00 0.00 5.28
110 111 1.578206 GAAGGCAAGCAAGACGGGTC 61.578 60.000 0.00 0.00 0.00 4.46
111 112 2.032681 GGCAAGCAAGACGGGTCT 59.967 61.111 0.00 0.00 42.75 3.85
112 113 2.035442 GGCAAGCAAGACGGGTCTC 61.035 63.158 1.16 0.00 39.39 3.36
113 114 1.301716 GCAAGCAAGACGGGTCTCA 60.302 57.895 1.16 0.00 39.39 3.27
114 115 0.884704 GCAAGCAAGACGGGTCTCAA 60.885 55.000 1.16 0.00 39.39 3.02
115 116 1.151668 CAAGCAAGACGGGTCTCAAG 58.848 55.000 1.16 0.00 39.39 3.02
116 117 0.603975 AAGCAAGACGGGTCTCAAGC 60.604 55.000 1.16 7.18 39.39 4.01
117 118 1.004440 GCAAGACGGGTCTCAAGCT 60.004 57.895 1.16 0.00 39.39 3.74
170 171 4.491676 CCCATCAATGTTTGAGCAAGAAG 58.508 43.478 0.00 0.00 43.98 2.85
198 199 0.833287 GCCATCCTTAGACTGGAGCA 59.167 55.000 4.57 0.00 36.99 4.26
307 323 6.715280 ACACATATGTCAGGAAAGATTGTCT 58.285 36.000 5.07 0.00 31.55 3.41
308 324 7.851228 ACACATATGTCAGGAAAGATTGTCTA 58.149 34.615 5.07 0.00 31.55 2.59
335 359 3.969250 GAACGGCCGGCAGAATCCA 62.969 63.158 33.66 0.00 0.00 3.41
370 394 4.024143 GCATGTTGCGTGGCACGA 62.024 61.111 40.94 23.72 46.05 4.35
371 395 2.127270 CATGTTGCGTGGCACGAC 60.127 61.111 40.94 30.13 46.05 4.34
372 396 2.590291 ATGTTGCGTGGCACGACA 60.590 55.556 40.94 34.21 46.05 4.35
373 397 2.606961 ATGTTGCGTGGCACGACAG 61.607 57.895 40.94 14.99 46.05 3.51
374 398 3.269347 GTTGCGTGGCACGACAGT 61.269 61.111 40.94 0.00 46.05 3.55
380 404 2.016704 GTGGCACGACAGTCGACAG 61.017 63.158 29.53 18.03 43.74 3.51
385 409 0.110147 CACGACAGTCGACAGAGGAC 60.110 60.000 29.53 3.88 43.74 3.85
386 410 1.132844 CGACAGTCGACAGAGGACG 59.867 63.158 18.63 11.85 43.74 4.79
388 412 0.954449 GACAGTCGACAGAGGACGGA 60.954 60.000 19.50 0.00 39.38 4.69
394 418 2.100197 TCGACAGAGGACGGATTGATT 58.900 47.619 0.00 0.00 33.05 2.57
411 435 2.012673 GATTGACGGCTGCTTCATCTT 58.987 47.619 0.00 0.00 0.00 2.40
412 436 1.159285 TTGACGGCTGCTTCATCTTG 58.841 50.000 0.00 0.00 0.00 3.02
414 438 1.270785 TGACGGCTGCTTCATCTTGAA 60.271 47.619 0.00 0.00 34.79 2.69
440 464 2.419574 GCAAATCCCTTCTAGCACGGTA 60.420 50.000 0.00 0.00 0.00 4.02
447 471 3.215151 CCTTCTAGCACGGTAGAGATGA 58.785 50.000 6.13 0.00 30.62 2.92
448 472 3.823873 CCTTCTAGCACGGTAGAGATGAT 59.176 47.826 6.13 0.00 30.62 2.45
449 473 4.320861 CCTTCTAGCACGGTAGAGATGATG 60.321 50.000 6.13 0.00 30.62 3.07
450 474 3.149981 TCTAGCACGGTAGAGATGATGG 58.850 50.000 1.89 0.00 0.00 3.51
451 475 2.073252 AGCACGGTAGAGATGATGGA 57.927 50.000 0.00 0.00 0.00 3.41
452 476 2.603021 AGCACGGTAGAGATGATGGAT 58.397 47.619 0.00 0.00 0.00 3.41
453 477 2.298446 AGCACGGTAGAGATGATGGATG 59.702 50.000 0.00 0.00 0.00 3.51
454 478 2.611473 GCACGGTAGAGATGATGGATGG 60.611 54.545 0.00 0.00 0.00 3.51
455 479 2.028658 CACGGTAGAGATGATGGATGGG 60.029 54.545 0.00 0.00 0.00 4.00
456 480 2.158310 ACGGTAGAGATGATGGATGGGA 60.158 50.000 0.00 0.00 0.00 4.37
457 481 2.899900 CGGTAGAGATGATGGATGGGAA 59.100 50.000 0.00 0.00 0.00 3.97
458 482 3.306364 CGGTAGAGATGATGGATGGGAAC 60.306 52.174 0.00 0.00 0.00 3.62
459 483 3.306364 GGTAGAGATGATGGATGGGAACG 60.306 52.174 0.00 0.00 0.00 3.95
460 484 1.696336 AGAGATGATGGATGGGAACGG 59.304 52.381 0.00 0.00 0.00 4.44
461 485 1.694150 GAGATGATGGATGGGAACGGA 59.306 52.381 0.00 0.00 0.00 4.69
462 486 1.696336 AGATGATGGATGGGAACGGAG 59.304 52.381 0.00 0.00 0.00 4.63
463 487 1.694150 GATGATGGATGGGAACGGAGA 59.306 52.381 0.00 0.00 0.00 3.71
464 488 1.578897 TGATGGATGGGAACGGAGAA 58.421 50.000 0.00 0.00 0.00 2.87
465 489 1.486310 TGATGGATGGGAACGGAGAAG 59.514 52.381 0.00 0.00 0.00 2.85
466 490 0.839946 ATGGATGGGAACGGAGAAGG 59.160 55.000 0.00 0.00 0.00 3.46
467 491 1.271840 TGGATGGGAACGGAGAAGGG 61.272 60.000 0.00 0.00 0.00 3.95
468 492 1.272554 GGATGGGAACGGAGAAGGGT 61.273 60.000 0.00 0.00 0.00 4.34
469 493 0.107654 GATGGGAACGGAGAAGGGTG 60.108 60.000 0.00 0.00 0.00 4.61
470 494 1.562672 ATGGGAACGGAGAAGGGTGG 61.563 60.000 0.00 0.00 0.00 4.61
471 495 2.222013 GGGAACGGAGAAGGGTGGT 61.222 63.158 0.00 0.00 0.00 4.16
472 496 0.906282 GGGAACGGAGAAGGGTGGTA 60.906 60.000 0.00 0.00 0.00 3.25
473 497 0.248565 GGAACGGAGAAGGGTGGTAC 59.751 60.000 0.00 0.00 0.00 3.34
474 498 0.248565 GAACGGAGAAGGGTGGTACC 59.751 60.000 4.43 4.43 37.60 3.34
522 546 1.000163 CGGGGTAGCAGTATGTAGCTG 60.000 57.143 0.00 0.00 41.97 4.24
537 561 6.560253 ATGTAGCTGTTTGTTTCCTTAGTG 57.440 37.500 0.00 0.00 0.00 2.74
592 616 8.476925 GCTTAGTTTTTGTGTTTGTATACTTGC 58.523 33.333 4.17 0.00 0.00 4.01
596 620 6.458232 TTTTGTGTTTGTATACTTGCACCT 57.542 33.333 15.95 0.00 0.00 4.00
642 666 6.801539 ATGTGTGTAAAACATGGTAGAGTG 57.198 37.500 0.00 0.00 44.89 3.51
644 668 6.818233 TGTGTGTAAAACATGGTAGAGTGTA 58.182 36.000 0.00 0.00 41.97 2.90
645 669 6.926826 TGTGTGTAAAACATGGTAGAGTGTAG 59.073 38.462 0.00 0.00 41.97 2.74
646 670 7.149973 GTGTGTAAAACATGGTAGAGTGTAGA 58.850 38.462 0.00 0.00 41.97 2.59
647 671 7.817962 GTGTGTAAAACATGGTAGAGTGTAGAT 59.182 37.037 0.00 0.00 41.97 1.98
648 672 8.372459 TGTGTAAAACATGGTAGAGTGTAGATT 58.628 33.333 0.00 0.00 32.36 2.40
649 673 8.870879 GTGTAAAACATGGTAGAGTGTAGATTC 58.129 37.037 0.00 0.00 0.00 2.52
650 674 8.590204 TGTAAAACATGGTAGAGTGTAGATTCA 58.410 33.333 0.00 0.00 0.00 2.57
651 675 7.907214 AAAACATGGTAGAGTGTAGATTCAC 57.093 36.000 0.00 0.00 38.46 3.18
664 688 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
665 689 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
666 690 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
667 691 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
675 699 9.961265 CACTCATTTTACTCCGTATATAGTTCA 57.039 33.333 0.00 0.00 0.00 3.18
730 754 0.178958 AGGTGACCTCGTCCTTCTGT 60.179 55.000 0.00 0.00 0.00 3.41
744 768 9.828852 CTCGTCCTTCTGTAAGTGTATATTATC 57.171 37.037 0.00 0.00 33.76 1.75
825 866 2.560504 ACGCAGTCAGTTCAATTGACA 58.439 42.857 14.86 0.00 45.72 3.58
835 876 5.473162 TCAGTTCAATTGACATGGTCGAATT 59.527 36.000 7.89 0.00 34.95 2.17
836 877 6.016360 TCAGTTCAATTGACATGGTCGAATTT 60.016 34.615 7.89 0.00 34.95 1.82
837 878 6.642131 CAGTTCAATTGACATGGTCGAATTTT 59.358 34.615 7.89 0.00 34.95 1.82
838 879 7.169645 CAGTTCAATTGACATGGTCGAATTTTT 59.830 33.333 7.89 0.00 34.95 1.94
858 899 2.472695 TTTGAGACCTGGTCGAATGG 57.527 50.000 20.49 0.00 37.67 3.16
859 900 0.613260 TTGAGACCTGGTCGAATGGG 59.387 55.000 20.49 0.00 37.67 4.00
860 901 0.544357 TGAGACCTGGTCGAATGGGT 60.544 55.000 20.49 1.52 37.67 4.51
861 902 0.613777 GAGACCTGGTCGAATGGGTT 59.386 55.000 20.49 0.74 37.67 4.11
862 903 1.003233 GAGACCTGGTCGAATGGGTTT 59.997 52.381 20.49 0.00 37.67 3.27
863 904 1.003233 AGACCTGGTCGAATGGGTTTC 59.997 52.381 20.49 0.00 37.67 2.78
864 905 0.768622 ACCTGGTCGAATGGGTTTCA 59.231 50.000 0.00 0.00 33.66 2.69
865 906 1.144093 ACCTGGTCGAATGGGTTTCAA 59.856 47.619 0.00 0.00 33.66 2.69
866 907 2.225017 ACCTGGTCGAATGGGTTTCAAT 60.225 45.455 0.00 0.00 33.66 2.57
867 908 2.825532 CCTGGTCGAATGGGTTTCAATT 59.174 45.455 0.00 0.00 33.66 2.32
868 909 3.367292 CCTGGTCGAATGGGTTTCAATTG 60.367 47.826 0.00 0.00 33.66 2.32
869 910 3.226777 TGGTCGAATGGGTTTCAATTGT 58.773 40.909 5.13 0.00 33.66 2.71
870 911 3.254657 TGGTCGAATGGGTTTCAATTGTC 59.745 43.478 5.13 0.00 33.66 3.18
871 912 3.506067 GGTCGAATGGGTTTCAATTGTCT 59.494 43.478 5.13 0.00 33.66 3.41
872 913 4.475944 GTCGAATGGGTTTCAATTGTCTG 58.524 43.478 5.13 0.00 33.66 3.51
873 914 4.023193 GTCGAATGGGTTTCAATTGTCTGT 60.023 41.667 5.13 0.00 33.66 3.41
874 915 4.215399 TCGAATGGGTTTCAATTGTCTGTC 59.785 41.667 5.13 0.00 33.66 3.51
875 916 4.216257 CGAATGGGTTTCAATTGTCTGTCT 59.784 41.667 5.13 0.00 33.66 3.41
876 917 5.458041 AATGGGTTTCAATTGTCTGTCTG 57.542 39.130 5.13 0.00 0.00 3.51
877 918 3.897239 TGGGTTTCAATTGTCTGTCTGT 58.103 40.909 5.13 0.00 0.00 3.41
878 919 5.042463 TGGGTTTCAATTGTCTGTCTGTA 57.958 39.130 5.13 0.00 0.00 2.74
879 920 4.819630 TGGGTTTCAATTGTCTGTCTGTAC 59.180 41.667 5.13 0.00 0.00 2.90
880 921 4.084013 GGGTTTCAATTGTCTGTCTGTACG 60.084 45.833 5.13 0.00 0.00 3.67
881 922 4.510340 GGTTTCAATTGTCTGTCTGTACGT 59.490 41.667 5.13 0.00 0.00 3.57
882 923 5.333111 GGTTTCAATTGTCTGTCTGTACGTC 60.333 44.000 5.13 0.00 0.00 4.34
883 924 4.577834 TCAATTGTCTGTCTGTACGTCA 57.422 40.909 5.13 0.00 0.00 4.35
884 925 5.134202 TCAATTGTCTGTCTGTACGTCAT 57.866 39.130 5.13 0.00 0.00 3.06
885 926 6.262193 TCAATTGTCTGTCTGTACGTCATA 57.738 37.500 5.13 0.00 0.00 2.15
886 927 6.090783 TCAATTGTCTGTCTGTACGTCATAC 58.909 40.000 5.13 0.00 0.00 2.39
887 928 4.430137 TTGTCTGTCTGTACGTCATACC 57.570 45.455 0.00 0.00 32.16 2.73
900 941 2.285818 ATACCGGGCCCTGGTTCA 60.286 61.111 33.62 21.89 40.96 3.18
901 942 1.926489 ATACCGGGCCCTGGTTCAA 60.926 57.895 33.62 21.30 40.96 2.69
902 943 1.502527 ATACCGGGCCCTGGTTCAAA 61.503 55.000 33.62 21.00 40.96 2.69
903 944 2.132089 TACCGGGCCCTGGTTCAAAG 62.132 60.000 33.62 11.53 40.96 2.77
947 1013 1.940613 GCCACCATTATCCTCGTCAAC 59.059 52.381 0.00 0.00 0.00 3.18
948 1014 2.561569 CCACCATTATCCTCGTCAACC 58.438 52.381 0.00 0.00 0.00 3.77
959 1025 0.107897 TCGTCAACCCCGATCCAATG 60.108 55.000 0.00 0.00 0.00 2.82
981 1047 1.840650 ATCCCCATCCCAGCTCTCG 60.841 63.158 0.00 0.00 0.00 4.04
1005 1072 2.601562 GGCCGACGACAATATGGAC 58.398 57.895 0.00 0.00 0.00 4.02
1060 1127 2.284699 CAACCCTCCGTCTCCCCT 60.285 66.667 0.00 0.00 0.00 4.79
1062 1141 2.865147 AACCCTCCGTCTCCCCTCA 61.865 63.158 0.00 0.00 0.00 3.86
1191 1270 0.821711 TGGCCGACCCTTGTCTTTTG 60.822 55.000 0.00 0.00 39.47 2.44
1305 1384 0.533755 GTTGAGCTGCTGTGTCCAGT 60.534 55.000 7.01 0.00 41.02 4.00
1314 1393 3.141398 TGCTGTGTCCAGTTCTGAAATC 58.859 45.455 1.00 0.00 41.02 2.17
1319 1398 4.761739 TGTGTCCAGTTCTGAAATCCATTC 59.238 41.667 1.00 0.00 38.60 2.67
1435 1515 1.267932 GCGCATTCTGCTTGTCTCATC 60.268 52.381 0.30 0.00 42.25 2.92
1436 1516 2.004733 CGCATTCTGCTTGTCTCATCA 58.995 47.619 0.00 0.00 42.25 3.07
1437 1517 2.612672 CGCATTCTGCTTGTCTCATCAT 59.387 45.455 0.00 0.00 42.25 2.45
1438 1518 3.805971 CGCATTCTGCTTGTCTCATCATA 59.194 43.478 0.00 0.00 42.25 2.15
1439 1519 4.451435 CGCATTCTGCTTGTCTCATCATAT 59.549 41.667 0.00 0.00 42.25 1.78
1440 1520 5.636543 CGCATTCTGCTTGTCTCATCATATA 59.363 40.000 0.00 0.00 42.25 0.86
1441 1521 6.146673 CGCATTCTGCTTGTCTCATCATATAA 59.853 38.462 0.00 0.00 42.25 0.98
1442 1522 7.296660 GCATTCTGCTTGTCTCATCATATAAC 58.703 38.462 0.00 0.00 40.96 1.89
1443 1523 7.508134 CATTCTGCTTGTCTCATCATATAACG 58.492 38.462 0.00 0.00 0.00 3.18
1444 1524 6.391227 TCTGCTTGTCTCATCATATAACGA 57.609 37.500 0.00 0.00 0.00 3.85
1445 1525 6.986250 TCTGCTTGTCTCATCATATAACGAT 58.014 36.000 0.00 0.00 0.00 3.73
1446 1526 6.865205 TCTGCTTGTCTCATCATATAACGATG 59.135 38.462 8.53 8.53 41.38 3.84
1447 1527 5.928264 TGCTTGTCTCATCATATAACGATGG 59.072 40.000 12.96 6.64 40.58 3.51
1448 1528 6.159293 GCTTGTCTCATCATATAACGATGGA 58.841 40.000 12.96 8.24 40.58 3.41
1449 1529 6.090088 GCTTGTCTCATCATATAACGATGGAC 59.910 42.308 18.22 18.22 40.58 4.02
1492 1572 3.695060 GCTAGTAGCTACTTCACCTGACA 59.305 47.826 30.40 9.19 38.45 3.58
1494 1574 4.993029 AGTAGCTACTTCACCTGACATC 57.007 45.455 20.95 0.00 31.13 3.06
1533 1617 3.689347 CCTTCAGTCATGGTGGAATGAA 58.311 45.455 6.01 6.01 46.06 2.57
1553 1637 6.411630 TGAACGATTTATCAAAGGGTAACG 57.588 37.500 0.00 0.00 37.60 3.18
1634 1723 0.390860 CCGATGGAGGCTCTAGGTTG 59.609 60.000 15.23 0.00 0.00 3.77
1651 1779 4.175962 AGGTTGGTCCTCTTTATCTCCAA 58.824 43.478 0.00 0.00 44.42 3.53
1659 1787 6.106673 GTCCTCTTTATCTCCAAATGTCGAA 58.893 40.000 0.00 0.00 0.00 3.71
1690 1818 0.519175 GCGATGCGTGCAACTAAGTG 60.519 55.000 0.00 0.00 31.75 3.16
1697 1825 2.803956 GCGTGCAACTAAGTGACCTTTA 59.196 45.455 0.00 0.00 31.89 1.85
1781 1909 2.410730 CGACATTGTTACCCAGAACGAC 59.589 50.000 0.00 0.00 31.59 4.34
1782 1910 3.660865 GACATTGTTACCCAGAACGACT 58.339 45.455 0.00 0.00 31.59 4.18
1791 1919 3.162666 ACCCAGAACGACTTACTCATCA 58.837 45.455 0.00 0.00 0.00 3.07
1844 1972 3.458189 CGAGAAGTGGCTAAAGGTATGG 58.542 50.000 0.00 0.00 0.00 2.74
1886 2014 5.063204 CCACTTTCTGACATCAACCTGTTA 58.937 41.667 0.00 0.00 0.00 2.41
1999 2127 0.108186 CCATCACAGCGAGCTAACCA 60.108 55.000 0.00 0.00 0.00 3.67
2079 2207 0.392998 TTTTCTGCGCTCCTCCATCC 60.393 55.000 9.73 0.00 0.00 3.51
2097 2225 1.766496 TCCCGTTCTGATGATTACCCC 59.234 52.381 0.00 0.00 0.00 4.95
2149 2277 1.839354 TGATGGCTCCATGCAGTAGAA 59.161 47.619 6.07 0.00 45.15 2.10
2191 2319 1.417517 TGGTCACTGCTTGATGTCTGT 59.582 47.619 0.00 0.00 36.32 3.41
2201 2329 2.636647 TGATGTCTGTGCTGTTTGGA 57.363 45.000 0.00 0.00 0.00 3.53
2234 2362 2.270352 TCCGTGTGGAAGCTGAATTT 57.730 45.000 0.00 0.00 42.85 1.82
2295 2423 2.095853 GGCACATGAACCATAGTGAACG 59.904 50.000 0.00 0.00 33.99 3.95
2329 2465 8.145767 AGATGAACACATTGACATTGATGTTTT 58.854 29.630 4.40 0.00 41.95 2.43
2364 2500 2.093658 AGTGAAAGTATGGTCCGCGATT 60.094 45.455 8.23 0.00 0.00 3.34
2371 2507 3.799755 GGTCCGCGATTGTGGCAC 61.800 66.667 8.23 11.55 45.79 5.01
2377 2517 0.454285 CGCGATTGTGGCACGAAAAT 60.454 50.000 12.40 6.52 0.00 1.82
2410 2550 4.270008 TGGTAGACAATCTGAGACGATGA 58.730 43.478 0.00 0.00 0.00 2.92
2436 2576 5.185828 TGGTCAGATATTATGGAGATGGTCG 59.814 44.000 0.00 0.00 0.00 4.79
2612 2781 6.203808 TGATTCTAATACAGCTACGTGTGT 57.796 37.500 0.00 1.42 31.46 3.72
2613 2782 7.324354 TGATTCTAATACAGCTACGTGTGTA 57.676 36.000 0.00 3.93 33.75 2.90
2614 2783 7.191551 TGATTCTAATACAGCTACGTGTGTAC 58.808 38.462 0.00 0.00 32.05 2.90
2615 2784 6.499234 TTCTAATACAGCTACGTGTGTACA 57.501 37.500 0.00 0.00 32.05 2.90
2616 2785 6.499234 TCTAATACAGCTACGTGTGTACAA 57.501 37.500 0.00 0.00 32.05 2.41
2617 2786 6.317088 TCTAATACAGCTACGTGTGTACAAC 58.683 40.000 0.00 0.00 32.05 3.32
2618 2787 4.778534 ATACAGCTACGTGTGTACAACT 57.221 40.909 0.00 0.00 32.05 3.16
2619 2788 2.739292 ACAGCTACGTGTGTACAACTG 58.261 47.619 0.00 0.00 31.74 3.16
2978 3174 1.067693 TTTCGCTGTGATACTGTGCG 58.932 50.000 0.00 0.00 46.71 5.34
3294 3497 7.158099 ACTTCAGATTTGTTATAGTTTGGGC 57.842 36.000 0.00 0.00 0.00 5.36
3304 3507 1.515081 TAGTTTGGGCGTACAAGCAC 58.485 50.000 9.74 0.00 41.82 4.40
3305 3508 0.179029 AGTTTGGGCGTACAAGCACT 60.179 50.000 9.74 2.99 42.02 4.40
3414 3617 5.371115 TTTTACCATGCCTTTTCTCTTCG 57.629 39.130 0.00 0.00 0.00 3.79
3440 3643 3.459227 TGCAGGATTGTCCATCTATTCCA 59.541 43.478 0.00 0.00 39.61 3.53
3491 3694 7.426929 TCTTCTTAGAGCAGAAAATGTTGTC 57.573 36.000 0.00 0.00 32.24 3.18
3657 3860 9.653287 TTGACTTAGACACACAAAATAGATAGG 57.347 33.333 0.00 0.00 0.00 2.57
3774 3977 6.836007 AGAAATTTACCCCAGATTCATCCTTC 59.164 38.462 0.00 0.00 0.00 3.46
3780 3983 9.852784 TTTACCCCAGATTCATCCTTCTATATA 57.147 33.333 0.00 0.00 0.00 0.86
3924 4127 5.806366 TCAGCATCATGTGAGTTGTAATG 57.194 39.130 0.00 0.00 0.00 1.90
3925 4128 5.247862 TCAGCATCATGTGAGTTGTAATGT 58.752 37.500 0.00 0.00 0.00 2.71
3926 4129 6.405538 TCAGCATCATGTGAGTTGTAATGTA 58.594 36.000 0.00 0.00 0.00 2.29
3927 4130 6.878389 TCAGCATCATGTGAGTTGTAATGTAA 59.122 34.615 0.00 0.00 0.00 2.41
3928 4131 7.553760 TCAGCATCATGTGAGTTGTAATGTAAT 59.446 33.333 0.00 0.00 0.00 1.89
3957 4160 5.422012 TCTTATATATTCTCAGGATGCGGCA 59.578 40.000 4.58 4.58 34.76 5.69
3995 4198 2.115343 ATGAAAAAGAGACCTCGGGC 57.885 50.000 0.00 0.00 34.09 6.13
4083 4291 4.645136 TCAACTGGTATTCATCTAGCTCGT 59.355 41.667 0.00 0.00 0.00 4.18
4097 4305 1.853319 CTCGTTTCTGTCGGTGTGC 59.147 57.895 0.00 0.00 0.00 4.57
4253 4461 2.039879 GGTTAGTTTCCTTCCTGCTCCA 59.960 50.000 0.00 0.00 0.00 3.86
4286 4519 0.108377 TTCGGTGCGCATACATCACT 60.108 50.000 15.91 0.00 0.00 3.41
4287 4520 0.527600 TCGGTGCGCATACATCACTC 60.528 55.000 15.91 0.00 0.00 3.51
4290 4523 1.594862 GGTGCGCATACATCACTCTTC 59.405 52.381 15.91 0.00 0.00 2.87
4291 4524 2.544685 GTGCGCATACATCACTCTTCT 58.455 47.619 15.91 0.00 0.00 2.85
4293 4526 2.931969 TGCGCATACATCACTCTTCTTG 59.068 45.455 5.66 0.00 0.00 3.02
4294 4527 2.932614 GCGCATACATCACTCTTCTTGT 59.067 45.455 0.30 0.00 0.00 3.16
4295 4528 3.242220 GCGCATACATCACTCTTCTTGTG 60.242 47.826 0.30 0.00 36.82 3.33
4296 4529 3.308053 CGCATACATCACTCTTCTTGTGG 59.692 47.826 0.00 0.00 36.21 4.17
4297 4530 4.256920 GCATACATCACTCTTCTTGTGGT 58.743 43.478 0.00 0.00 36.21 4.16
4483 4721 6.884280 ATTTTCTTTGTTACCCTGAGTGAG 57.116 37.500 0.00 0.00 0.00 3.51
4502 4740 1.849039 AGTAGCAGCATCAAGGGGATT 59.151 47.619 0.00 0.00 32.57 3.01
4503 4741 1.952296 GTAGCAGCATCAAGGGGATTG 59.048 52.381 0.00 0.00 40.52 2.67
4519 4757 3.308117 GGGATTGTAGGGATGTGTTGTCA 60.308 47.826 0.00 0.00 0.00 3.58
4529 4772 3.559171 GGATGTGTTGTCATACCACTGGT 60.559 47.826 5.88 5.88 40.16 4.00
4533 4776 4.097135 TGTGTTGTCATACCACTGGTTTTG 59.903 41.667 5.90 5.34 37.09 2.44
4534 4777 4.097286 GTGTTGTCATACCACTGGTTTTGT 59.903 41.667 5.90 0.00 37.09 2.83
4553 4796 3.248418 TGCCCCAGCACAGCAGTA 61.248 61.111 0.00 0.00 46.52 2.74
4554 4797 2.437359 GCCCCAGCACAGCAGTAG 60.437 66.667 0.00 0.00 39.53 2.57
4559 4802 1.759445 CCCAGCACAGCAGTAGTAGAT 59.241 52.381 0.00 0.00 0.00 1.98
4560 4803 2.482664 CCCAGCACAGCAGTAGTAGATG 60.483 54.545 0.00 0.00 0.00 2.90
4568 4811 3.940657 GCAGTAGTAGATGCTTTGCAG 57.059 47.619 0.00 0.00 43.65 4.41
4612 4855 6.238374 GCAACGGTGTATATTTGTTCTGCTAT 60.238 38.462 0.66 0.00 0.00 2.97
4613 4856 7.678690 GCAACGGTGTATATTTGTTCTGCTATT 60.679 37.037 0.66 0.00 0.00 1.73
4614 4857 7.859325 ACGGTGTATATTTGTTCTGCTATTT 57.141 32.000 0.00 0.00 0.00 1.40
4615 4858 7.693952 ACGGTGTATATTTGTTCTGCTATTTG 58.306 34.615 0.00 0.00 0.00 2.32
4616 4859 7.335924 ACGGTGTATATTTGTTCTGCTATTTGT 59.664 33.333 0.00 0.00 0.00 2.83
4617 4860 8.181573 CGGTGTATATTTGTTCTGCTATTTGTT 58.818 33.333 0.00 0.00 0.00 2.83
4618 4861 9.503427 GGTGTATATTTGTTCTGCTATTTGTTC 57.497 33.333 0.00 0.00 0.00 3.18
4625 4868 4.515191 TGTTCTGCTATTTGTTCTGGTCAC 59.485 41.667 0.00 0.00 0.00 3.67
4627 4870 3.327757 TCTGCTATTTGTTCTGGTCACCT 59.672 43.478 0.00 0.00 0.00 4.00
4636 4879 0.679505 TCTGGTCACCTTCTGTTCGG 59.320 55.000 0.00 0.00 0.00 4.30
4643 4886 3.247886 GTCACCTTCTGTTCGGTTTTCTC 59.752 47.826 0.00 0.00 0.00 2.87
4646 4889 2.548480 CCTTCTGTTCGGTTTTCTCACC 59.452 50.000 0.00 0.00 0.00 4.02
4647 4890 2.992124 TCTGTTCGGTTTTCTCACCA 57.008 45.000 0.00 0.00 36.49 4.17
4648 4891 2.557317 TCTGTTCGGTTTTCTCACCAC 58.443 47.619 0.00 0.00 36.49 4.16
4649 4892 1.260561 CTGTTCGGTTTTCTCACCACG 59.739 52.381 0.00 0.00 36.49 4.94
4651 4894 2.159128 TGTTCGGTTTTCTCACCACGTA 60.159 45.455 0.00 0.00 36.49 3.57
4652 4895 2.138596 TCGGTTTTCTCACCACGTAC 57.861 50.000 0.00 0.00 36.49 3.67
4655 4898 2.604373 CGGTTTTCTCACCACGTACGTA 60.604 50.000 22.34 4.29 36.49 3.57
4657 4900 3.550842 GGTTTTCTCACCACGTACGTAGT 60.551 47.826 22.34 17.88 40.00 2.73
4658 4901 3.988379 TTTCTCACCACGTACGTAGTT 57.012 42.857 22.34 5.11 37.78 2.24
4659 4902 3.542712 TTCTCACCACGTACGTAGTTC 57.457 47.619 22.34 0.00 37.78 3.01
4661 4904 2.481568 TCTCACCACGTACGTAGTTCTG 59.518 50.000 22.34 11.69 37.78 3.02
4662 4905 2.481568 CTCACCACGTACGTAGTTCTGA 59.518 50.000 22.34 12.43 37.78 3.27
4663 4906 2.877786 TCACCACGTACGTAGTTCTGAA 59.122 45.455 22.34 0.00 37.78 3.02
4665 4908 2.618241 ACCACGTACGTAGTTCTGAACA 59.382 45.455 22.34 6.02 37.78 3.18
4666 4909 3.254166 ACCACGTACGTAGTTCTGAACAT 59.746 43.478 22.34 9.84 37.78 2.71
4667 4910 4.455533 ACCACGTACGTAGTTCTGAACATA 59.544 41.667 22.34 8.95 37.78 2.29
4668 4911 5.026462 CCACGTACGTAGTTCTGAACATAG 58.974 45.833 22.34 13.66 37.78 2.23
4670 4913 4.033684 CGTACGTAGTTCTGAACATAGCC 58.966 47.826 21.50 5.02 37.78 3.93
4671 4914 3.521947 ACGTAGTTCTGAACATAGCCC 57.478 47.619 21.50 2.99 37.78 5.19
4672 4915 2.159282 ACGTAGTTCTGAACATAGCCCG 60.159 50.000 21.50 14.70 37.78 6.13
4673 4916 2.098607 CGTAGTTCTGAACATAGCCCGA 59.901 50.000 21.50 0.00 0.00 5.14
4674 4917 3.428452 CGTAGTTCTGAACATAGCCCGAA 60.428 47.826 21.50 0.00 0.00 4.30
4676 4919 3.535561 AGTTCTGAACATAGCCCGAATG 58.464 45.455 21.50 0.00 0.00 2.67
4677 4920 3.197766 AGTTCTGAACATAGCCCGAATGA 59.802 43.478 21.50 0.00 0.00 2.57
4678 4921 3.904800 TCTGAACATAGCCCGAATGAA 57.095 42.857 0.00 0.00 0.00 2.57
4679 4922 4.422073 TCTGAACATAGCCCGAATGAAT 57.578 40.909 0.00 0.00 0.00 2.57
4680 4923 4.780815 TCTGAACATAGCCCGAATGAATT 58.219 39.130 0.00 0.00 0.00 2.17
4681 4924 5.192927 TCTGAACATAGCCCGAATGAATTT 58.807 37.500 0.00 0.00 0.00 1.82
4682 4925 5.296780 TCTGAACATAGCCCGAATGAATTTC 59.703 40.000 0.00 0.00 0.00 2.17
4683 4926 4.946772 TGAACATAGCCCGAATGAATTTCA 59.053 37.500 0.75 0.75 33.66 2.69
4684 4927 4.900635 ACATAGCCCGAATGAATTTCAC 57.099 40.909 0.15 0.00 33.66 3.18
4685 4928 3.632145 ACATAGCCCGAATGAATTTCACC 59.368 43.478 0.15 0.00 33.66 4.02
4686 4929 1.094785 AGCCCGAATGAATTTCACCG 58.905 50.000 0.15 8.39 33.66 4.94
4687 4930 1.091537 GCCCGAATGAATTTCACCGA 58.908 50.000 18.73 0.00 33.66 4.69
4688 4931 1.470890 GCCCGAATGAATTTCACCGAA 59.529 47.619 18.73 0.00 33.66 4.30
4689 4932 2.094957 GCCCGAATGAATTTCACCGAAA 60.095 45.455 18.73 0.00 35.94 3.46
4690 4933 3.612955 GCCCGAATGAATTTCACCGAAAA 60.613 43.478 18.73 0.00 35.11 2.29
4691 4934 4.743493 CCCGAATGAATTTCACCGAAAAT 58.257 39.130 18.73 0.00 35.11 1.82
4692 4935 5.677598 GCCCGAATGAATTTCACCGAAAATA 60.678 40.000 18.73 0.00 35.11 1.40
4693 4936 6.503524 CCCGAATGAATTTCACCGAAAATAT 58.496 36.000 18.73 0.00 35.11 1.28
4694 4937 7.644490 CCCGAATGAATTTCACCGAAAATATA 58.356 34.615 18.73 0.00 35.11 0.86
4695 4938 7.589954 CCCGAATGAATTTCACCGAAAATATAC 59.410 37.037 18.73 0.00 35.11 1.47
4696 4939 8.342634 CCGAATGAATTTCACCGAAAATATACT 58.657 33.333 18.73 0.00 35.11 2.12
4697 4940 9.158364 CGAATGAATTTCACCGAAAATATACTG 57.842 33.333 14.29 0.00 35.11 2.74
4700 4943 8.786826 TGAATTTCACCGAAAATATACTGTCT 57.213 30.769 0.00 0.00 35.11 3.41
4701 4944 8.664798 TGAATTTCACCGAAAATATACTGTCTG 58.335 33.333 0.00 0.00 35.11 3.51
4709 4952 7.057149 CGAAAATATACTGTCTGTTTCGGTT 57.943 36.000 15.12 0.00 42.03 4.44
4722 4965 4.109050 TGTTTCGGTTTGATGCTTGTTTC 58.891 39.130 0.00 0.00 0.00 2.78
4723 4966 4.109050 GTTTCGGTTTGATGCTTGTTTCA 58.891 39.130 0.00 0.00 0.00 2.69
4725 4968 4.582701 TCGGTTTGATGCTTGTTTCATT 57.417 36.364 0.00 0.00 0.00 2.57
4726 4969 4.545610 TCGGTTTGATGCTTGTTTCATTC 58.454 39.130 0.00 0.00 0.00 2.67
4727 4970 4.037327 TCGGTTTGATGCTTGTTTCATTCA 59.963 37.500 0.00 0.00 0.00 2.57
4730 4973 5.697633 GGTTTGATGCTTGTTTCATTCACAT 59.302 36.000 0.00 0.00 0.00 3.21
4731 4974 6.203338 GGTTTGATGCTTGTTTCATTCACATT 59.797 34.615 0.00 0.00 0.00 2.71
4733 4976 7.410800 TTGATGCTTGTTTCATTCACATTTC 57.589 32.000 0.00 0.00 0.00 2.17
4735 4978 6.643360 TGATGCTTGTTTCATTCACATTTCTG 59.357 34.615 0.00 0.00 0.00 3.02
4736 4979 5.291178 TGCTTGTTTCATTCACATTTCTGG 58.709 37.500 0.00 0.00 0.00 3.86
4738 4981 4.870123 TGTTTCATTCACATTTCTGGGG 57.130 40.909 0.00 0.00 0.00 4.96
4739 4982 4.222336 TGTTTCATTCACATTTCTGGGGT 58.778 39.130 0.00 0.00 0.00 4.95
4796 5048 0.403655 TGGTACAGCATGGCCTGAAA 59.596 50.000 3.32 0.00 43.62 2.69
4806 5058 2.252976 TGGCCTGAAATTTGGTTTGC 57.747 45.000 3.32 0.00 0.00 3.68
4820 5072 4.521130 TGGTTTGCGGTGCATTTTATAA 57.479 36.364 0.00 0.00 38.76 0.98
4874 5135 1.675552 CTTTCGGTCAAACTGGTGGT 58.324 50.000 0.00 0.00 0.00 4.16
4879 5140 1.733526 GTCAAACTGGTGGTGCCAC 59.266 57.895 12.66 12.66 43.61 5.01
4880 5141 0.751643 GTCAAACTGGTGGTGCCACT 60.752 55.000 19.37 0.00 43.61 4.00
4925 5199 4.393062 CGTCTGAAGTGGAATTACAATGCT 59.607 41.667 0.00 0.00 0.00 3.79
4926 5200 5.106555 CGTCTGAAGTGGAATTACAATGCTT 60.107 40.000 0.00 0.00 0.00 3.91
5086 5364 3.402110 CAGCATGGAGTGTAGTGAAACA 58.598 45.455 0.00 0.00 41.43 2.83
5097 5375 6.037423 GTGTAGTGAAACACTGAAACTCTG 57.963 41.667 13.62 0.00 45.01 3.35
5098 5376 4.570772 TGTAGTGAAACACTGAAACTCTGC 59.429 41.667 13.62 0.00 45.01 4.26
5103 5403 5.863935 GTGAAACACTGAAACTCTGCTTTTT 59.136 36.000 0.00 0.00 36.32 1.94
5104 5404 7.027161 GTGAAACACTGAAACTCTGCTTTTTA 58.973 34.615 0.00 0.00 36.32 1.52
5117 5417 8.655651 ACTCTGCTTTTTATTCTACATCTAGC 57.344 34.615 0.00 0.00 0.00 3.42
5248 8467 2.808543 AGTGCTGCTGCTAGTAAACAAC 59.191 45.455 17.00 3.17 40.48 3.32
5250 8469 3.003275 GTGCTGCTGCTAGTAAACAACAA 59.997 43.478 17.00 0.00 40.48 2.83
5264 8483 1.302033 AACAAGTGCTCTGCCTCCG 60.302 57.895 0.00 0.00 0.00 4.63
5266 8485 4.400961 AAGTGCTCTGCCTCCGCC 62.401 66.667 0.00 0.00 0.00 6.13
5272 8491 4.722535 TCTGCCTCCGCCCCTCTT 62.723 66.667 0.00 0.00 0.00 2.85
5273 8492 4.168291 CTGCCTCCGCCCCTCTTC 62.168 72.222 0.00 0.00 0.00 2.87
5274 8493 4.722535 TGCCTCCGCCCCTCTTCT 62.723 66.667 0.00 0.00 0.00 2.85
5292 8511 0.615850 CTCCCCTTTCTCCACAGTCC 59.384 60.000 0.00 0.00 0.00 3.85
5304 8523 1.605710 CCACAGTCCAAGCAACAGAAG 59.394 52.381 0.00 0.00 0.00 2.85
5306 8525 2.547211 CACAGTCCAAGCAACAGAAGAG 59.453 50.000 0.00 0.00 0.00 2.85
5307 8526 2.149578 CAGTCCAAGCAACAGAAGAGG 58.850 52.381 0.00 0.00 0.00 3.69
5308 8527 0.877743 GTCCAAGCAACAGAAGAGGC 59.122 55.000 0.00 0.00 0.00 4.70
5309 8528 0.473755 TCCAAGCAACAGAAGAGGCA 59.526 50.000 0.00 0.00 0.00 4.75
5310 8529 0.595095 CCAAGCAACAGAAGAGGCAC 59.405 55.000 0.00 0.00 0.00 5.01
5311 8530 1.311859 CAAGCAACAGAAGAGGCACA 58.688 50.000 0.00 0.00 0.00 4.57
5312 8531 1.002033 CAAGCAACAGAAGAGGCACAC 60.002 52.381 0.00 0.00 0.00 3.82
5313 8532 0.181114 AGCAACAGAAGAGGCACACA 59.819 50.000 0.00 0.00 0.00 3.72
5314 8533 0.308993 GCAACAGAAGAGGCACACAC 59.691 55.000 0.00 0.00 0.00 3.82
5315 8534 1.667236 CAACAGAAGAGGCACACACA 58.333 50.000 0.00 0.00 0.00 3.72
5316 8535 2.224606 CAACAGAAGAGGCACACACAT 58.775 47.619 0.00 0.00 0.00 3.21
5317 8536 2.175878 ACAGAAGAGGCACACACATC 57.824 50.000 0.00 0.00 0.00 3.06
5318 8537 1.696336 ACAGAAGAGGCACACACATCT 59.304 47.619 0.00 0.00 0.00 2.90
5319 8538 2.289320 ACAGAAGAGGCACACACATCTC 60.289 50.000 0.00 0.00 0.00 2.75
5320 8539 1.973515 AGAAGAGGCACACACATCTCA 59.026 47.619 0.00 0.00 0.00 3.27
5321 8540 2.369860 AGAAGAGGCACACACATCTCAA 59.630 45.455 0.00 0.00 0.00 3.02
5322 8541 3.008813 AGAAGAGGCACACACATCTCAAT 59.991 43.478 0.00 0.00 0.00 2.57
5336 8559 9.327628 CACACATCTCAATAAGATTCAGAGAAT 57.672 33.333 0.00 0.00 42.30 2.40
5343 8566 8.082672 TCAATAAGATTCAGAGAATCACCTCA 57.917 34.615 18.70 3.11 37.82 3.86
5344 8567 7.984050 TCAATAAGATTCAGAGAATCACCTCAC 59.016 37.037 18.70 0.00 37.82 3.51
5345 8568 4.751767 AGATTCAGAGAATCACCTCACC 57.248 45.455 18.70 0.00 37.82 4.02
5346 8569 4.099633 AGATTCAGAGAATCACCTCACCA 58.900 43.478 18.70 0.00 37.82 4.17
5347 8570 3.685139 TTCAGAGAATCACCTCACCAC 57.315 47.619 0.00 0.00 37.82 4.16
5352 8575 3.964031 AGAGAATCACCTCACCACTATCC 59.036 47.826 0.00 0.00 37.82 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.203928 CGCTCACCGTCTTGATCATC 58.796 55.000 0.00 0.00 0.00 2.92
1 2 3.352447 CGCTCACCGTCTTGATCAT 57.648 52.632 0.00 0.00 0.00 2.45
2 3 4.889427 CGCTCACCGTCTTGATCA 57.111 55.556 0.00 0.00 0.00 2.92
17 18 2.431601 AACAGAGAGCAGCGACGC 60.432 61.111 13.03 13.03 0.00 5.19
18 19 0.109735 TACAACAGAGAGCAGCGACG 60.110 55.000 0.00 0.00 0.00 5.12
19 20 1.623359 CTACAACAGAGAGCAGCGAC 58.377 55.000 0.00 0.00 0.00 5.19
20 21 0.109086 GCTACAACAGAGAGCAGCGA 60.109 55.000 0.00 0.00 36.20 4.93
21 22 1.409227 CGCTACAACAGAGAGCAGCG 61.409 60.000 0.00 0.00 44.72 5.18
22 23 1.080995 CCGCTACAACAGAGAGCAGC 61.081 60.000 0.00 0.00 35.91 5.25
23 24 1.080995 GCCGCTACAACAGAGAGCAG 61.081 60.000 0.00 0.00 35.91 4.24
24 25 1.079819 GCCGCTACAACAGAGAGCA 60.080 57.895 0.00 0.00 35.91 4.26
25 26 1.811679 GGCCGCTACAACAGAGAGC 60.812 63.158 0.00 0.00 0.00 4.09
26 27 1.517257 CGGCCGCTACAACAGAGAG 60.517 63.158 14.67 0.00 0.00 3.20
27 28 1.529152 TTCGGCCGCTACAACAGAGA 61.529 55.000 23.51 0.00 0.00 3.10
28 29 0.669318 TTTCGGCCGCTACAACAGAG 60.669 55.000 23.51 0.00 0.00 3.35
29 30 0.036765 ATTTCGGCCGCTACAACAGA 60.037 50.000 23.51 0.00 0.00 3.41
30 31 0.802494 AATTTCGGCCGCTACAACAG 59.198 50.000 23.51 0.00 0.00 3.16
31 32 0.800012 GAATTTCGGCCGCTACAACA 59.200 50.000 23.51 0.00 0.00 3.33
32 33 0.247537 CGAATTTCGGCCGCTACAAC 60.248 55.000 23.51 9.06 36.00 3.32
33 34 0.390078 TCGAATTTCGGCCGCTACAA 60.390 50.000 23.51 6.58 40.88 2.41
34 35 0.804544 CTCGAATTTCGGCCGCTACA 60.805 55.000 23.51 0.00 40.88 2.74
35 36 0.804933 ACTCGAATTTCGGCCGCTAC 60.805 55.000 23.51 8.85 40.88 3.58
36 37 0.740149 TACTCGAATTTCGGCCGCTA 59.260 50.000 23.51 11.35 40.88 4.26
37 38 0.527817 CTACTCGAATTTCGGCCGCT 60.528 55.000 23.51 4.26 40.88 5.52
38 39 1.488261 CCTACTCGAATTTCGGCCGC 61.488 60.000 23.51 4.66 40.88 6.53
39 40 0.101759 TCCTACTCGAATTTCGGCCG 59.898 55.000 22.12 22.12 40.88 6.13
40 41 2.202566 CTTCCTACTCGAATTTCGGCC 58.797 52.381 18.02 0.00 40.88 6.13
41 42 1.593469 GCTTCCTACTCGAATTTCGGC 59.407 52.381 18.02 7.65 40.88 5.54
42 43 1.852895 CGCTTCCTACTCGAATTTCGG 59.147 52.381 18.02 11.38 40.88 4.30
43 44 2.793933 TCGCTTCCTACTCGAATTTCG 58.206 47.619 12.54 12.54 42.10 3.46
44 45 3.422546 CGATCGCTTCCTACTCGAATTTC 59.577 47.826 0.26 0.00 35.77 2.17
45 46 3.066342 TCGATCGCTTCCTACTCGAATTT 59.934 43.478 11.09 0.00 35.62 1.82
46 47 2.617308 TCGATCGCTTCCTACTCGAATT 59.383 45.455 11.09 0.00 35.62 2.17
47 48 2.219458 TCGATCGCTTCCTACTCGAAT 58.781 47.619 11.09 0.00 35.62 3.34
48 49 1.660167 TCGATCGCTTCCTACTCGAA 58.340 50.000 11.09 0.00 35.62 3.71
49 50 1.799403 GATCGATCGCTTCCTACTCGA 59.201 52.381 11.09 0.00 41.91 4.04
50 51 1.135916 GGATCGATCGCTTCCTACTCG 60.136 57.143 22.38 0.00 0.00 4.18
51 52 1.200484 GGGATCGATCGCTTCCTACTC 59.800 57.143 29.36 8.51 36.87 2.59
52 53 1.202952 AGGGATCGATCGCTTCCTACT 60.203 52.381 32.53 14.29 46.37 2.57
53 54 1.068194 CAGGGATCGATCGCTTCCTAC 60.068 57.143 34.76 12.84 46.37 3.18
54 55 1.248486 CAGGGATCGATCGCTTCCTA 58.752 55.000 34.76 5.76 46.37 2.94
55 56 2.045280 CAGGGATCGATCGCTTCCT 58.955 57.895 34.76 24.13 46.37 3.36
56 57 1.666234 GCAGGGATCGATCGCTTCC 60.666 63.158 34.76 25.73 46.37 3.46
57 58 0.943359 CTGCAGGGATCGATCGCTTC 60.943 60.000 34.76 30.83 46.37 3.86
58 59 1.068753 CTGCAGGGATCGATCGCTT 59.931 57.895 34.76 20.92 46.37 4.68
60 61 2.356793 CCTGCAGGGATCGATCGC 60.357 66.667 29.44 29.44 39.75 4.58
61 62 1.300465 CACCTGCAGGGATCGATCG 60.300 63.158 35.42 9.36 40.27 3.69
62 63 0.683973 ATCACCTGCAGGGATCGATC 59.316 55.000 35.42 17.36 40.27 3.69
63 64 1.071385 GAATCACCTGCAGGGATCGAT 59.929 52.381 35.42 25.63 40.27 3.59
64 65 0.465705 GAATCACCTGCAGGGATCGA 59.534 55.000 35.42 24.65 40.27 3.59
65 66 0.533755 GGAATCACCTGCAGGGATCG 60.534 60.000 35.42 20.49 40.27 3.69
66 67 3.410960 GGAATCACCTGCAGGGATC 57.589 57.895 35.42 24.65 40.27 3.36
76 77 1.521681 CTTCGCCCGAGGAATCACC 60.522 63.158 0.00 0.00 39.35 4.02
77 78 1.521681 CCTTCGCCCGAGGAATCAC 60.522 63.158 1.12 0.00 0.00 3.06
78 79 2.900273 CCTTCGCCCGAGGAATCA 59.100 61.111 1.12 0.00 0.00 2.57
79 80 2.589159 GCCTTCGCCCGAGGAATC 60.589 66.667 1.12 0.00 0.00 2.52
80 81 2.876368 CTTGCCTTCGCCCGAGGAAT 62.876 60.000 1.12 0.00 0.00 3.01
81 82 3.605749 CTTGCCTTCGCCCGAGGAA 62.606 63.158 1.12 0.00 0.00 3.36
82 83 4.082523 CTTGCCTTCGCCCGAGGA 62.083 66.667 1.12 0.00 0.00 3.71
85 86 4.634703 TTGCTTGCCTTCGCCCGA 62.635 61.111 0.00 0.00 0.00 5.14
86 87 4.107051 CTTGCTTGCCTTCGCCCG 62.107 66.667 0.00 0.00 0.00 6.13
87 88 2.672996 TCTTGCTTGCCTTCGCCC 60.673 61.111 0.00 0.00 0.00 6.13
88 89 2.563427 GTCTTGCTTGCCTTCGCC 59.437 61.111 0.00 0.00 0.00 5.54
89 90 2.174349 CGTCTTGCTTGCCTTCGC 59.826 61.111 0.00 0.00 0.00 4.70
90 91 2.680913 CCCGTCTTGCTTGCCTTCG 61.681 63.158 0.00 0.00 0.00 3.79
91 92 1.578206 GACCCGTCTTGCTTGCCTTC 61.578 60.000 0.00 0.00 0.00 3.46
92 93 1.600916 GACCCGTCTTGCTTGCCTT 60.601 57.895 0.00 0.00 0.00 4.35
93 94 2.032681 GACCCGTCTTGCTTGCCT 59.967 61.111 0.00 0.00 0.00 4.75
94 95 2.032681 AGACCCGTCTTGCTTGCC 59.967 61.111 0.00 0.00 36.31 4.52
95 96 0.884704 TTGAGACCCGTCTTGCTTGC 60.885 55.000 0.00 0.00 40.61 4.01
96 97 1.151668 CTTGAGACCCGTCTTGCTTG 58.848 55.000 0.00 0.00 40.61 4.01
97 98 0.603975 GCTTGAGACCCGTCTTGCTT 60.604 55.000 0.00 0.00 40.61 3.91
98 99 1.004440 GCTTGAGACCCGTCTTGCT 60.004 57.895 0.00 0.00 40.61 3.91
99 100 1.004440 AGCTTGAGACCCGTCTTGC 60.004 57.895 0.00 4.88 40.61 4.01
100 101 0.034059 ACAGCTTGAGACCCGTCTTG 59.966 55.000 0.00 0.00 40.61 3.02
101 102 0.759346 AACAGCTTGAGACCCGTCTT 59.241 50.000 0.00 0.00 40.61 3.01
102 103 0.759346 AAACAGCTTGAGACCCGTCT 59.241 50.000 0.00 0.00 43.78 4.18
103 104 1.264288 CAAAACAGCTTGAGACCCGTC 59.736 52.381 0.00 0.00 0.00 4.79
104 105 1.308998 CAAAACAGCTTGAGACCCGT 58.691 50.000 0.00 0.00 0.00 5.28
105 106 0.040067 GCAAAACAGCTTGAGACCCG 60.040 55.000 0.00 0.00 0.00 5.28
106 107 1.322442 AGCAAAACAGCTTGAGACCC 58.678 50.000 0.00 0.00 43.70 4.46
115 116 4.383948 GCAACTGAGATAAAGCAAAACAGC 59.616 41.667 0.00 0.00 0.00 4.40
116 117 5.766222 AGCAACTGAGATAAAGCAAAACAG 58.234 37.500 0.00 0.00 0.00 3.16
117 118 5.772825 AGCAACTGAGATAAAGCAAAACA 57.227 34.783 0.00 0.00 0.00 2.83
128 129 2.149578 GCTGACACAAGCAACTGAGAT 58.850 47.619 0.00 0.00 43.01 2.75
188 189 4.889409 TCAAAGTTTCAAATGCTCCAGTCT 59.111 37.500 0.00 0.00 0.00 3.24
227 228 4.744795 ACAAGTCACTTGAGAGTTGAGT 57.255 40.909 24.73 0.00 46.84 3.41
228 229 4.872691 ACAACAAGTCACTTGAGAGTTGAG 59.127 41.667 24.73 10.25 46.84 3.02
229 230 4.631377 CACAACAAGTCACTTGAGAGTTGA 59.369 41.667 24.73 0.00 46.84 3.18
307 323 1.601419 CCGGCCGTTCCTTCTCACTA 61.601 60.000 26.12 0.00 0.00 2.74
308 324 2.657237 CGGCCGTTCCTTCTCACT 59.343 61.111 19.50 0.00 0.00 3.41
335 359 0.988063 GCTTCCCTTCCCTCTGACTT 59.012 55.000 0.00 0.00 0.00 3.01
362 386 2.016704 CTGTCGACTGTCGTGCCAC 61.017 63.158 27.16 18.83 41.35 5.01
363 387 2.130073 CTCTGTCGACTGTCGTGCCA 62.130 60.000 27.16 20.20 41.35 4.92
368 392 1.132844 CGTCCTCTGTCGACTGTCG 59.867 63.158 23.33 23.33 42.10 4.35
369 393 0.954449 TCCGTCCTCTGTCGACTGTC 60.954 60.000 17.92 0.00 0.00 3.51
370 394 0.322636 ATCCGTCCTCTGTCGACTGT 60.323 55.000 17.92 0.00 0.00 3.55
371 395 0.811915 AATCCGTCCTCTGTCGACTG 59.188 55.000 17.92 16.72 0.00 3.51
372 396 0.811915 CAATCCGTCCTCTGTCGACT 59.188 55.000 17.92 0.00 0.00 4.18
373 397 0.809385 TCAATCCGTCCTCTGTCGAC 59.191 55.000 9.11 9.11 0.00 4.20
374 398 1.763968 ATCAATCCGTCCTCTGTCGA 58.236 50.000 0.00 0.00 0.00 4.20
380 404 1.571919 CCGTCAATCAATCCGTCCTC 58.428 55.000 0.00 0.00 0.00 3.71
385 409 1.091771 AGCAGCCGTCAATCAATCCG 61.092 55.000 0.00 0.00 0.00 4.18
386 410 1.064654 GAAGCAGCCGTCAATCAATCC 59.935 52.381 0.00 0.00 0.00 3.01
388 412 1.825090 TGAAGCAGCCGTCAATCAAT 58.175 45.000 0.00 0.00 0.00 2.57
394 418 0.321346 TCAAGATGAAGCAGCCGTCA 59.679 50.000 0.00 0.00 34.04 4.35
411 435 1.582610 GAAGGGATTTGCGCGGTTCA 61.583 55.000 8.83 0.00 34.07 3.18
412 436 1.136774 GAAGGGATTTGCGCGGTTC 59.863 57.895 8.83 0.00 34.07 3.62
414 438 0.462047 CTAGAAGGGATTTGCGCGGT 60.462 55.000 8.83 0.00 34.07 5.68
440 464 1.696336 CCGTTCCCATCCATCATCTCT 59.304 52.381 0.00 0.00 0.00 3.10
447 471 0.839946 CCTTCTCCGTTCCCATCCAT 59.160 55.000 0.00 0.00 0.00 3.41
448 472 1.271840 CCCTTCTCCGTTCCCATCCA 61.272 60.000 0.00 0.00 0.00 3.41
449 473 1.272554 ACCCTTCTCCGTTCCCATCC 61.273 60.000 0.00 0.00 0.00 3.51
450 474 0.107654 CACCCTTCTCCGTTCCCATC 60.108 60.000 0.00 0.00 0.00 3.51
451 475 1.562672 CCACCCTTCTCCGTTCCCAT 61.563 60.000 0.00 0.00 0.00 4.00
452 476 2.221299 CCACCCTTCTCCGTTCCCA 61.221 63.158 0.00 0.00 0.00 4.37
453 477 0.906282 TACCACCCTTCTCCGTTCCC 60.906 60.000 0.00 0.00 0.00 3.97
454 478 0.248565 GTACCACCCTTCTCCGTTCC 59.751 60.000 0.00 0.00 0.00 3.62
455 479 0.248565 GGTACCACCCTTCTCCGTTC 59.751 60.000 7.15 0.00 30.04 3.95
456 480 2.369654 GGTACCACCCTTCTCCGTT 58.630 57.895 7.15 0.00 30.04 4.44
457 481 4.125239 GGTACCACCCTTCTCCGT 57.875 61.111 7.15 0.00 30.04 4.69
482 506 4.017808 CCGACTCCTATAACTCCCATAGG 58.982 52.174 2.54 2.54 44.42 2.57
483 507 4.017808 CCCGACTCCTATAACTCCCATAG 58.982 52.174 0.00 0.00 0.00 2.23
484 508 3.245514 CCCCGACTCCTATAACTCCCATA 60.246 52.174 0.00 0.00 0.00 2.74
522 546 5.689383 TCATCAGCACTAAGGAAACAAAC 57.311 39.130 0.00 0.00 0.00 2.93
537 561 4.352039 CTTGACAGCATTTCATCATCAGC 58.648 43.478 0.00 0.00 0.00 4.26
566 590 8.476925 GCAAGTATACAAACACAAAAACTAAGC 58.523 33.333 5.50 0.00 0.00 3.09
592 616 2.684881 GGACTGGTTGCATTGATAGGTG 59.315 50.000 0.00 0.00 0.00 4.00
596 620 3.289836 CCATGGACTGGTTGCATTGATA 58.710 45.455 5.56 0.00 40.49 2.15
617 641 5.181245 ACTCTACCATGTTTTACACACATGC 59.819 40.000 7.41 0.00 46.98 4.06
640 664 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
641 665 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
695 719 9.379791 CGAGGTCACCTTTTTAGAAATATAAGT 57.620 33.333 0.00 0.00 31.76 2.24
696 720 9.379791 ACGAGGTCACCTTTTTAGAAATATAAG 57.620 33.333 0.00 0.00 31.76 1.73
697 721 9.374838 GACGAGGTCACCTTTTTAGAAATATAA 57.625 33.333 0.00 0.00 31.76 0.98
698 722 7.983484 GGACGAGGTCACCTTTTTAGAAATATA 59.017 37.037 0.00 0.00 31.76 0.86
699 723 6.822170 GGACGAGGTCACCTTTTTAGAAATAT 59.178 38.462 0.00 0.00 31.76 1.28
700 724 6.013984 AGGACGAGGTCACCTTTTTAGAAATA 60.014 38.462 0.00 0.00 31.76 1.40
701 725 5.001874 GGACGAGGTCACCTTTTTAGAAAT 58.998 41.667 0.00 0.00 31.76 2.17
702 726 4.102054 AGGACGAGGTCACCTTTTTAGAAA 59.898 41.667 0.00 0.00 31.76 2.52
703 727 3.644738 AGGACGAGGTCACCTTTTTAGAA 59.355 43.478 0.00 0.00 31.76 2.10
704 728 3.236896 AGGACGAGGTCACCTTTTTAGA 58.763 45.455 0.00 0.00 31.76 2.10
705 729 3.679824 AGGACGAGGTCACCTTTTTAG 57.320 47.619 0.00 0.00 31.76 1.85
706 730 3.644738 AGAAGGACGAGGTCACCTTTTTA 59.355 43.478 0.00 0.00 42.98 1.52
707 731 2.438392 AGAAGGACGAGGTCACCTTTTT 59.562 45.455 0.00 0.00 42.98 1.94
804 845 3.723260 TGTCAATTGAACTGACTGCGTA 58.277 40.909 10.35 0.00 43.03 4.42
806 847 3.485633 CATGTCAATTGAACTGACTGCG 58.514 45.455 10.35 0.00 43.03 5.18
837 878 3.146066 CCATTCGACCAGGTCTCAAAAA 58.854 45.455 17.95 4.65 0.00 1.94
838 879 2.552155 CCCATTCGACCAGGTCTCAAAA 60.552 50.000 17.95 6.98 0.00 2.44
839 880 1.003118 CCCATTCGACCAGGTCTCAAA 59.997 52.381 17.95 9.36 0.00 2.69
840 881 0.613260 CCCATTCGACCAGGTCTCAA 59.387 55.000 17.95 10.32 0.00 3.02
841 882 0.544357 ACCCATTCGACCAGGTCTCA 60.544 55.000 17.95 4.03 0.00 3.27
842 883 0.613777 AACCCATTCGACCAGGTCTC 59.386 55.000 17.95 0.00 0.00 3.36
843 884 1.003233 GAAACCCATTCGACCAGGTCT 59.997 52.381 17.95 0.00 0.00 3.85
844 885 1.271163 TGAAACCCATTCGACCAGGTC 60.271 52.381 9.92 9.92 41.18 3.85
845 886 0.768622 TGAAACCCATTCGACCAGGT 59.231 50.000 0.00 0.00 41.18 4.00
846 887 1.904287 TTGAAACCCATTCGACCAGG 58.096 50.000 0.00 0.00 41.18 4.45
847 888 3.255642 ACAATTGAAACCCATTCGACCAG 59.744 43.478 13.59 0.00 41.18 4.00
848 889 3.226777 ACAATTGAAACCCATTCGACCA 58.773 40.909 13.59 0.00 41.18 4.02
849 890 3.506067 AGACAATTGAAACCCATTCGACC 59.494 43.478 13.59 0.00 41.18 4.79
850 891 4.023193 ACAGACAATTGAAACCCATTCGAC 60.023 41.667 13.59 0.00 41.18 4.20
851 892 4.141287 ACAGACAATTGAAACCCATTCGA 58.859 39.130 13.59 0.00 41.18 3.71
852 893 4.216257 AGACAGACAATTGAAACCCATTCG 59.784 41.667 13.59 0.00 41.18 3.34
853 894 5.010012 ACAGACAGACAATTGAAACCCATTC 59.990 40.000 13.59 0.00 38.60 2.67
854 895 4.895297 ACAGACAGACAATTGAAACCCATT 59.105 37.500 13.59 0.00 0.00 3.16
855 896 4.473444 ACAGACAGACAATTGAAACCCAT 58.527 39.130 13.59 0.00 0.00 4.00
856 897 3.897239 ACAGACAGACAATTGAAACCCA 58.103 40.909 13.59 0.00 0.00 4.51
857 898 4.084013 CGTACAGACAGACAATTGAAACCC 60.084 45.833 13.59 0.00 0.00 4.11
858 899 4.510340 ACGTACAGACAGACAATTGAAACC 59.490 41.667 13.59 0.00 0.00 3.27
859 900 5.233476 TGACGTACAGACAGACAATTGAAAC 59.767 40.000 13.59 3.33 0.00 2.78
860 901 5.353111 TGACGTACAGACAGACAATTGAAA 58.647 37.500 13.59 0.00 0.00 2.69
861 902 4.939271 TGACGTACAGACAGACAATTGAA 58.061 39.130 13.59 0.00 0.00 2.69
862 903 4.577834 TGACGTACAGACAGACAATTGA 57.422 40.909 13.59 0.00 0.00 2.57
863 904 5.288712 GGTATGACGTACAGACAGACAATTG 59.711 44.000 3.24 3.24 41.82 2.32
864 905 5.408356 GGTATGACGTACAGACAGACAATT 58.592 41.667 7.13 0.00 41.82 2.32
865 906 4.438336 CGGTATGACGTACAGACAGACAAT 60.438 45.833 7.13 0.00 41.82 2.71
866 907 3.120095 CGGTATGACGTACAGACAGACAA 60.120 47.826 7.13 0.00 41.82 3.18
867 908 2.417586 CGGTATGACGTACAGACAGACA 59.582 50.000 7.13 0.00 41.82 3.41
868 909 2.223203 CCGGTATGACGTACAGACAGAC 60.223 54.545 7.13 3.49 41.82 3.51
869 910 2.011947 CCGGTATGACGTACAGACAGA 58.988 52.381 7.13 0.00 41.82 3.41
870 911 1.065102 CCCGGTATGACGTACAGACAG 59.935 57.143 0.00 9.31 41.82 3.51
871 912 1.097232 CCCGGTATGACGTACAGACA 58.903 55.000 0.00 0.00 41.82 3.41
872 913 0.248784 GCCCGGTATGACGTACAGAC 60.249 60.000 0.00 0.00 39.65 3.51
873 914 1.386525 GGCCCGGTATGACGTACAGA 61.387 60.000 0.00 0.00 34.87 3.41
874 915 1.066918 GGCCCGGTATGACGTACAG 59.933 63.158 0.00 2.80 34.87 2.74
875 916 2.425569 GGGCCCGGTATGACGTACA 61.426 63.158 5.69 0.00 34.87 2.90
876 917 2.129785 AGGGCCCGGTATGACGTAC 61.130 63.158 18.44 0.00 0.00 3.67
877 918 2.129146 CAGGGCCCGGTATGACGTA 61.129 63.158 18.44 0.00 0.00 3.57
878 919 3.467226 CAGGGCCCGGTATGACGT 61.467 66.667 18.44 0.00 0.00 4.34
879 920 4.235762 CCAGGGCCCGGTATGACG 62.236 72.222 21.37 0.00 0.00 4.35
880 921 2.604299 GAACCAGGGCCCGGTATGAC 62.604 65.000 30.55 20.27 34.99 3.06
881 922 2.285818 AACCAGGGCCCGGTATGA 60.286 61.111 30.55 0.00 34.99 2.15
882 923 2.192175 GAACCAGGGCCCGGTATG 59.808 66.667 30.55 18.41 34.99 2.39
883 924 1.502527 TTTGAACCAGGGCCCGGTAT 61.503 55.000 30.55 22.12 34.99 2.73
884 925 2.132089 CTTTGAACCAGGGCCCGGTA 62.132 60.000 30.55 18.03 34.99 4.02
885 926 3.503839 TTTGAACCAGGGCCCGGT 61.504 61.111 26.69 26.69 38.85 5.28
886 927 2.676471 CTTTGAACCAGGGCCCGG 60.676 66.667 25.51 25.51 0.00 5.73
887 928 1.971695 GACTTTGAACCAGGGCCCG 60.972 63.158 18.44 11.67 0.00 6.13
947 1013 0.250901 GGATGGACATTGGATCGGGG 60.251 60.000 0.00 0.00 0.00 5.73
948 1014 0.250901 GGGATGGACATTGGATCGGG 60.251 60.000 0.00 0.00 0.00 5.14
959 1025 2.061790 GAGCTGGGATGGGGATGGAC 62.062 65.000 0.00 0.00 0.00 4.02
981 1047 2.582202 TATTGTCGTCGGCCGTCGTC 62.582 60.000 36.32 31.97 40.32 4.20
1060 1127 4.880426 GGAGGAGGGGCGGGATGA 62.880 72.222 0.00 0.00 0.00 2.92
1191 1270 1.866853 CGCAAGGAACAGAAAGGGGC 61.867 60.000 0.00 0.00 0.00 5.80
1305 1384 4.043310 ACTGACAGGGAATGGATTTCAGAA 59.957 41.667 7.51 0.00 33.88 3.02
1314 1393 2.584835 TTGGAACTGACAGGGAATGG 57.415 50.000 7.51 0.00 0.00 3.16
1319 1398 4.827284 ACTTGTAATTTGGAACTGACAGGG 59.173 41.667 7.51 0.00 0.00 4.45
1349 1428 6.948309 GGGATAAAAATGGGCATAGTGATAGT 59.052 38.462 0.00 0.00 0.00 2.12
1435 1515 2.661675 CGCTTCCGTCCATCGTTATATG 59.338 50.000 0.00 0.00 37.94 1.78
1436 1516 2.925306 GCGCTTCCGTCCATCGTTATAT 60.925 50.000 0.00 0.00 37.94 0.86
1437 1517 1.601162 GCGCTTCCGTCCATCGTTATA 60.601 52.381 0.00 0.00 37.94 0.98
1438 1518 0.874607 GCGCTTCCGTCCATCGTTAT 60.875 55.000 0.00 0.00 37.94 1.89
1439 1519 1.517694 GCGCTTCCGTCCATCGTTA 60.518 57.895 0.00 0.00 37.94 3.18
1440 1520 2.813908 GCGCTTCCGTCCATCGTT 60.814 61.111 0.00 0.00 37.94 3.85
1441 1521 4.814294 GGCGCTTCCGTCCATCGT 62.814 66.667 7.64 0.00 37.94 3.73
1450 1530 1.261619 CTAATGTCAATCGGCGCTTCC 59.738 52.381 7.64 0.00 0.00 3.46
1451 1531 1.333258 GCTAATGTCAATCGGCGCTTC 60.333 52.381 7.64 0.00 0.00 3.86
1533 1617 5.088680 TCCGTTACCCTTTGATAAATCGT 57.911 39.130 0.00 0.00 0.00 3.73
1634 1723 4.811557 CGACATTTGGAGATAAAGAGGACC 59.188 45.833 0.00 0.00 0.00 4.46
1659 1787 0.729116 CGCATCGCTGTGGAAAGAAT 59.271 50.000 0.00 0.00 0.00 2.40
1690 1818 7.042725 GCAACAAAGAAGGAAATGTTAAAGGTC 60.043 37.037 0.00 0.00 34.45 3.85
1697 1825 4.122046 GCAGCAACAAAGAAGGAAATGTT 58.878 39.130 0.00 0.00 36.49 2.71
1781 1909 1.270518 CCTGGGCCGATGATGAGTAAG 60.271 57.143 0.00 0.00 0.00 2.34
1782 1910 0.758734 CCTGGGCCGATGATGAGTAA 59.241 55.000 0.00 0.00 0.00 2.24
1844 1972 2.093341 TGGTTCTTTAGCCACGGGTATC 60.093 50.000 0.00 0.00 0.00 2.24
1999 2127 4.754411 AGGAGGGAATGATGCCAATATT 57.246 40.909 0.00 0.00 40.09 1.28
2079 2207 1.540363 CCGGGGTAATCATCAGAACGG 60.540 57.143 0.00 0.00 0.00 4.44
2097 2225 0.804544 TCGCTTACCTCAAATCGCCG 60.805 55.000 0.00 0.00 0.00 6.46
2149 2277 6.272795 CCACAAACTGGAGATTGGTACCAAT 61.273 44.000 35.12 35.12 44.90 3.16
2191 2319 2.634453 TGAGATCTCAGTCCAAACAGCA 59.366 45.455 21.67 0.00 34.14 4.41
2234 2362 9.474920 CAGCAATTAAACTTCCATACTTCAAAA 57.525 29.630 0.00 0.00 0.00 2.44
2295 2423 6.734137 TGTCAATGTGTTCATCTTAACCAAC 58.266 36.000 0.00 0.00 32.56 3.77
2340 2476 2.794910 CGCGGACCATACTTTCACTATG 59.205 50.000 0.00 0.00 0.00 2.23
2341 2477 2.691526 TCGCGGACCATACTTTCACTAT 59.308 45.455 6.13 0.00 0.00 2.12
2343 2479 0.892755 TCGCGGACCATACTTTCACT 59.107 50.000 6.13 0.00 0.00 3.41
2344 2480 1.935933 ATCGCGGACCATACTTTCAC 58.064 50.000 6.13 0.00 0.00 3.18
2345 2481 2.276201 CAATCGCGGACCATACTTTCA 58.724 47.619 6.13 0.00 0.00 2.69
2346 2482 2.030457 CACAATCGCGGACCATACTTTC 59.970 50.000 6.13 0.00 0.00 2.62
2347 2483 2.006888 CACAATCGCGGACCATACTTT 58.993 47.619 6.13 0.00 0.00 2.66
2348 2484 1.651987 CACAATCGCGGACCATACTT 58.348 50.000 6.13 0.00 0.00 2.24
2349 2485 0.179084 CCACAATCGCGGACCATACT 60.179 55.000 6.13 0.00 0.00 2.12
2364 2500 3.998099 TGATTCAATTTTCGTGCCACA 57.002 38.095 0.00 0.00 0.00 4.17
2371 2507 6.024049 GTCTACCAGCTTGATTCAATTTTCG 58.976 40.000 0.00 0.00 0.00 3.46
2377 2517 5.645067 CAGATTGTCTACCAGCTTGATTCAA 59.355 40.000 0.00 0.00 0.00 2.69
2410 2550 6.087456 ACCATCTCCATAATATCTGACCAGT 58.913 40.000 0.00 0.00 0.00 4.00
2436 2576 6.846350 ACAGATTAAATTGCACTTCTACAGC 58.154 36.000 0.00 0.00 0.00 4.40
2612 2781 5.894964 TCCCATAGCAGTATGTACAGTTGTA 59.105 40.000 0.33 0.00 39.31 2.41
2613 2782 4.714802 TCCCATAGCAGTATGTACAGTTGT 59.285 41.667 0.33 0.00 39.31 3.32
2614 2783 5.050490 GTCCCATAGCAGTATGTACAGTTG 58.950 45.833 0.33 0.71 39.31 3.16
2615 2784 4.962995 AGTCCCATAGCAGTATGTACAGTT 59.037 41.667 0.33 0.00 39.31 3.16
2616 2785 4.547671 AGTCCCATAGCAGTATGTACAGT 58.452 43.478 0.33 0.00 39.31 3.55
2617 2786 5.069119 TGAAGTCCCATAGCAGTATGTACAG 59.931 44.000 0.33 0.00 39.31 2.74
2618 2787 4.959839 TGAAGTCCCATAGCAGTATGTACA 59.040 41.667 0.00 0.00 39.31 2.90
2619 2788 5.531122 TGAAGTCCCATAGCAGTATGTAC 57.469 43.478 0.00 0.00 39.31 2.90
2874 3069 9.461312 AAGCTAGTGTAATTCATTAACAATGGA 57.539 29.630 0.00 0.00 39.38 3.41
3178 3381 7.914427 ACAATTGGTAGACACCTATGATCTA 57.086 36.000 10.83 0.00 45.98 1.98
3198 3401 6.418057 TTTATCACCCAAAAGAGCAACAAT 57.582 33.333 0.00 0.00 0.00 2.71
3402 3605 2.031682 CCTGCACAACGAAGAGAAAAGG 60.032 50.000 0.00 0.00 0.00 3.11
3403 3606 2.872245 TCCTGCACAACGAAGAGAAAAG 59.128 45.455 0.00 0.00 0.00 2.27
3414 3617 2.440409 AGATGGACAATCCTGCACAAC 58.560 47.619 0.00 0.00 37.46 3.32
3622 3825 5.924254 TGTGTGTCTAAGTCAAGGAAATACG 59.076 40.000 0.00 0.00 0.00 3.06
3657 3860 4.016444 TCAACCAGAAATAATGAGCACCC 58.984 43.478 0.00 0.00 0.00 4.61
3840 4043 3.878086 TCTGTTTGTTTGATCTGACGC 57.122 42.857 0.00 0.00 0.00 5.19
3934 4137 5.664457 TGCCGCATCCTGAGAATATATAAG 58.336 41.667 0.00 0.00 0.00 1.73
3957 4160 3.968649 TCATTATGGCAATTGCAAGGGAT 59.031 39.130 30.32 14.62 44.36 3.85
3995 4198 4.634004 TGTCACAGCCCAAAAATATACGAG 59.366 41.667 0.00 0.00 0.00 4.18
4097 4305 2.896044 TCAGCTATCAGTAGAGCCATGG 59.104 50.000 7.63 7.63 41.00 3.66
4151 4359 4.768583 TCTTGCCTGCAAAGTTCAAATTT 58.231 34.783 6.00 0.00 35.33 1.82
4253 4461 0.461339 ACCGAAACACTTCACACGCT 60.461 50.000 0.00 0.00 0.00 5.07
4286 4519 9.396022 GGATTCAAGATTATTACCACAAGAAGA 57.604 33.333 0.00 0.00 0.00 2.87
4287 4520 9.177608 TGGATTCAAGATTATTACCACAAGAAG 57.822 33.333 0.00 0.00 0.00 2.85
4290 4523 7.557719 AGGTGGATTCAAGATTATTACCACAAG 59.442 37.037 0.00 0.00 45.36 3.16
4291 4524 7.410174 AGGTGGATTCAAGATTATTACCACAA 58.590 34.615 0.00 0.00 45.36 3.33
4293 4526 7.775561 AGAAGGTGGATTCAAGATTATTACCAC 59.224 37.037 0.00 0.00 43.62 4.16
4294 4527 7.872138 AGAAGGTGGATTCAAGATTATTACCA 58.128 34.615 0.00 0.00 0.00 3.25
4295 4528 8.214364 AGAGAAGGTGGATTCAAGATTATTACC 58.786 37.037 0.00 0.00 0.00 2.85
4296 4529 9.620259 AAGAGAAGGTGGATTCAAGATTATTAC 57.380 33.333 0.00 0.00 0.00 1.89
4297 4530 9.838339 GAAGAGAAGGTGGATTCAAGATTATTA 57.162 33.333 0.00 0.00 0.00 0.98
4483 4721 1.952296 CAATCCCCTTGATGCTGCTAC 59.048 52.381 0.00 0.00 36.97 3.58
4502 4740 3.841255 TGGTATGACAACACATCCCTACA 59.159 43.478 0.00 0.00 29.49 2.74
4503 4741 4.081087 AGTGGTATGACAACACATCCCTAC 60.081 45.833 9.88 0.00 37.58 3.18
4519 4757 2.367241 GGGCAAACAAAACCAGTGGTAT 59.633 45.455 17.09 4.80 33.12 2.73
4553 4796 3.332919 CAGTGTCTGCAAAGCATCTACT 58.667 45.455 0.00 0.00 38.13 2.57
4554 4797 3.736530 CAGTGTCTGCAAAGCATCTAC 57.263 47.619 0.00 0.00 38.13 2.59
4588 4831 5.545658 AGCAGAACAAATATACACCGTTG 57.454 39.130 0.00 0.00 0.00 4.10
4590 4833 7.335924 ACAAATAGCAGAACAAATATACACCGT 59.664 33.333 0.00 0.00 0.00 4.83
4612 4855 3.644966 ACAGAAGGTGACCAGAACAAA 57.355 42.857 3.63 0.00 0.00 2.83
4613 4856 3.541632 GAACAGAAGGTGACCAGAACAA 58.458 45.455 3.63 0.00 0.00 2.83
4614 4857 2.483013 CGAACAGAAGGTGACCAGAACA 60.483 50.000 3.63 0.00 0.00 3.18
4615 4858 2.135933 CGAACAGAAGGTGACCAGAAC 58.864 52.381 3.63 0.00 0.00 3.01
4616 4859 1.070134 CCGAACAGAAGGTGACCAGAA 59.930 52.381 3.63 0.00 0.00 3.02
4617 4860 0.679505 CCGAACAGAAGGTGACCAGA 59.320 55.000 3.63 0.00 0.00 3.86
4618 4861 0.393077 ACCGAACAGAAGGTGACCAG 59.607 55.000 3.63 0.00 39.66 4.00
4625 4868 2.548480 GGTGAGAAAACCGAACAGAAGG 59.452 50.000 0.00 0.00 0.00 3.46
4627 4870 2.940410 GTGGTGAGAAAACCGAACAGAA 59.060 45.455 0.00 0.00 43.73 3.02
4636 4879 3.632189 ACTACGTACGTGGTGAGAAAAC 58.368 45.455 32.64 0.00 38.39 2.43
4643 4886 2.975410 TCAGAACTACGTACGTGGTG 57.025 50.000 33.56 22.54 39.72 4.17
4646 4889 4.494764 GCTATGTTCAGAACTACGTACGTG 59.505 45.833 30.25 20.95 0.00 4.49
4647 4890 4.437930 GGCTATGTTCAGAACTACGTACGT 60.438 45.833 25.98 25.98 0.00 3.57
4648 4891 4.033684 GGCTATGTTCAGAACTACGTACG 58.966 47.826 15.01 15.01 0.00 3.67
4649 4892 4.357996 GGGCTATGTTCAGAACTACGTAC 58.642 47.826 14.51 1.25 0.00 3.67
4651 4894 2.159282 CGGGCTATGTTCAGAACTACGT 60.159 50.000 14.51 0.00 0.00 3.57
4652 4895 2.098607 TCGGGCTATGTTCAGAACTACG 59.901 50.000 14.51 9.38 0.00 3.51
4655 4898 3.197766 TCATTCGGGCTATGTTCAGAACT 59.802 43.478 14.51 3.10 0.00 3.01
4657 4900 3.904800 TCATTCGGGCTATGTTCAGAA 57.095 42.857 0.00 0.00 0.00 3.02
4658 4901 3.904800 TTCATTCGGGCTATGTTCAGA 57.095 42.857 0.00 0.00 0.00 3.27
4659 4902 5.066375 TGAAATTCATTCGGGCTATGTTCAG 59.934 40.000 0.00 0.00 41.18 3.02
4661 4904 5.273944 GTGAAATTCATTCGGGCTATGTTC 58.726 41.667 0.00 0.00 41.18 3.18
4662 4905 4.097892 GGTGAAATTCATTCGGGCTATGTT 59.902 41.667 0.00 0.00 41.18 2.71
4663 4906 3.632145 GGTGAAATTCATTCGGGCTATGT 59.368 43.478 0.00 0.00 41.18 2.29
4665 4908 2.878406 CGGTGAAATTCATTCGGGCTAT 59.122 45.455 0.00 0.00 41.18 2.97
4666 4909 2.093394 TCGGTGAAATTCATTCGGGCTA 60.093 45.455 16.84 1.32 41.18 3.93
4667 4910 1.094785 CGGTGAAATTCATTCGGGCT 58.905 50.000 0.00 0.00 41.18 5.19
4668 4911 1.091537 TCGGTGAAATTCATTCGGGC 58.908 50.000 16.84 0.00 41.18 6.13
4670 4913 8.342634 AGTATATTTTCGGTGAAATTCATTCGG 58.657 33.333 16.84 4.12 41.18 4.30
4671 4914 9.158364 CAGTATATTTTCGGTGAAATTCATTCG 57.842 33.333 12.88 12.88 41.18 3.34
4674 4917 9.396022 AGACAGTATATTTTCGGTGAAATTCAT 57.604 29.630 0.00 0.00 31.34 2.57
4676 4919 8.665685 ACAGACAGTATATTTTCGGTGAAATTC 58.334 33.333 0.00 0.00 31.34 2.17
4677 4920 8.561738 ACAGACAGTATATTTTCGGTGAAATT 57.438 30.769 0.00 0.00 31.34 1.82
4678 4921 8.561738 AACAGACAGTATATTTTCGGTGAAAT 57.438 30.769 0.00 0.00 31.34 2.17
4679 4922 7.972832 AACAGACAGTATATTTTCGGTGAAA 57.027 32.000 0.00 0.00 0.00 2.69
4680 4923 7.148705 CGAAACAGACAGTATATTTTCGGTGAA 60.149 37.037 12.80 0.00 40.84 3.18
4681 4924 6.309494 CGAAACAGACAGTATATTTTCGGTGA 59.691 38.462 12.80 0.00 40.84 4.02
4682 4925 6.466812 CGAAACAGACAGTATATTTTCGGTG 58.533 40.000 12.80 0.00 40.84 4.94
4683 4926 6.642683 CGAAACAGACAGTATATTTTCGGT 57.357 37.500 12.80 0.00 40.84 4.69
4685 4928 6.642683 ACCGAAACAGACAGTATATTTTCG 57.357 37.500 13.36 13.36 42.97 3.46
4686 4929 8.500773 TCAAACCGAAACAGACAGTATATTTTC 58.499 33.333 0.00 0.00 0.00 2.29
4687 4930 8.385898 TCAAACCGAAACAGACAGTATATTTT 57.614 30.769 0.00 0.00 0.00 1.82
4688 4931 7.972832 TCAAACCGAAACAGACAGTATATTT 57.027 32.000 0.00 0.00 0.00 1.40
4689 4932 7.414098 GCATCAAACCGAAACAGACAGTATATT 60.414 37.037 0.00 0.00 0.00 1.28
4690 4933 6.037172 GCATCAAACCGAAACAGACAGTATAT 59.963 38.462 0.00 0.00 0.00 0.86
4691 4934 5.350365 GCATCAAACCGAAACAGACAGTATA 59.650 40.000 0.00 0.00 0.00 1.47
4692 4935 4.154195 GCATCAAACCGAAACAGACAGTAT 59.846 41.667 0.00 0.00 0.00 2.12
4693 4936 3.496884 GCATCAAACCGAAACAGACAGTA 59.503 43.478 0.00 0.00 0.00 2.74
4694 4937 2.290641 GCATCAAACCGAAACAGACAGT 59.709 45.455 0.00 0.00 0.00 3.55
4695 4938 2.549754 AGCATCAAACCGAAACAGACAG 59.450 45.455 0.00 0.00 0.00 3.51
4696 4939 2.571212 AGCATCAAACCGAAACAGACA 58.429 42.857 0.00 0.00 0.00 3.41
4697 4940 3.243068 ACAAGCATCAAACCGAAACAGAC 60.243 43.478 0.00 0.00 0.00 3.51
4698 4941 2.948979 ACAAGCATCAAACCGAAACAGA 59.051 40.909 0.00 0.00 0.00 3.41
4699 4942 3.354089 ACAAGCATCAAACCGAAACAG 57.646 42.857 0.00 0.00 0.00 3.16
4700 4943 3.791973 AACAAGCATCAAACCGAAACA 57.208 38.095 0.00 0.00 0.00 2.83
4701 4944 4.109050 TGAAACAAGCATCAAACCGAAAC 58.891 39.130 0.00 0.00 0.00 2.78
4709 4952 7.170151 CAGAAATGTGAATGAAACAAGCATCAA 59.830 33.333 0.00 0.00 0.00 2.57
4722 4965 3.343617 ACGTACCCCAGAAATGTGAATG 58.656 45.455 0.00 0.00 0.00 2.67
4723 4966 3.713826 ACGTACCCCAGAAATGTGAAT 57.286 42.857 0.00 0.00 0.00 2.57
4725 4968 3.142951 CAAACGTACCCCAGAAATGTGA 58.857 45.455 0.00 0.00 0.00 3.58
4726 4969 2.882137 ACAAACGTACCCCAGAAATGTG 59.118 45.455 0.00 0.00 0.00 3.21
4727 4970 3.217681 ACAAACGTACCCCAGAAATGT 57.782 42.857 0.00 0.00 0.00 2.71
4730 4973 3.118334 TCAGAACAAACGTACCCCAGAAA 60.118 43.478 0.00 0.00 0.00 2.52
4731 4974 2.435069 TCAGAACAAACGTACCCCAGAA 59.565 45.455 0.00 0.00 0.00 3.02
4733 4976 2.536761 TCAGAACAAACGTACCCCAG 57.463 50.000 0.00 0.00 0.00 4.45
4735 4978 3.208594 ACTTTCAGAACAAACGTACCCC 58.791 45.455 0.00 0.00 0.00 4.95
4736 4979 4.888038 AACTTTCAGAACAAACGTACCC 57.112 40.909 0.00 0.00 0.00 3.69
4738 4981 7.045419 CGGTAAAAACTTTCAGAACAAACGTAC 60.045 37.037 0.00 0.00 0.00 3.67
4739 4982 6.960431 CGGTAAAAACTTTCAGAACAAACGTA 59.040 34.615 0.00 0.00 0.00 3.57
4796 5048 2.252976 AAATGCACCGCAAACCAAAT 57.747 40.000 0.00 0.00 43.62 2.32
4806 5058 9.781834 TTTAATGAAGACTTATAAAATGCACCG 57.218 29.630 0.00 0.00 0.00 4.94
4874 5135 2.297701 GGACAAAACTTCAGAGTGGCA 58.702 47.619 0.00 0.00 35.91 4.92
4879 5140 3.625764 TGGTTTCGGACAAAACTTCAGAG 59.374 43.478 0.00 0.00 38.81 3.35
4880 5141 3.375922 GTGGTTTCGGACAAAACTTCAGA 59.624 43.478 0.00 0.00 38.81 3.27
4918 5192 3.316308 GTCACTGTCTGGAAAAGCATTGT 59.684 43.478 0.00 0.00 0.00 2.71
4925 5199 2.441375 TGGGATGTCACTGTCTGGAAAA 59.559 45.455 0.00 0.00 0.00 2.29
4926 5200 2.054021 TGGGATGTCACTGTCTGGAAA 58.946 47.619 0.00 0.00 0.00 3.13
5053 5331 1.736645 CATGCTGCAACTTGCTGGC 60.737 57.895 18.96 18.80 45.31 4.85
5056 5334 0.538977 ACTCCATGCTGCAACTTGCT 60.539 50.000 14.78 0.00 45.31 3.91
5067 5345 3.813529 GTGTTTCACTACACTCCATGC 57.186 47.619 0.00 0.00 43.92 4.06
5086 5364 8.677148 TGTAGAATAAAAAGCAGAGTTTCAGT 57.323 30.769 0.00 0.00 0.00 3.41
5091 5369 9.103861 GCTAGATGTAGAATAAAAAGCAGAGTT 57.896 33.333 0.05 0.00 0.00 3.01
5092 5370 8.260818 TGCTAGATGTAGAATAAAAAGCAGAGT 58.739 33.333 0.05 0.00 32.88 3.24
5093 5371 8.547069 GTGCTAGATGTAGAATAAAAAGCAGAG 58.453 37.037 0.05 0.00 38.05 3.35
5096 5374 7.280876 CAGGTGCTAGATGTAGAATAAAAAGCA 59.719 37.037 0.05 0.00 35.26 3.91
5097 5375 7.495934 TCAGGTGCTAGATGTAGAATAAAAAGC 59.504 37.037 0.05 0.00 0.00 3.51
5098 5376 8.821894 GTCAGGTGCTAGATGTAGAATAAAAAG 58.178 37.037 0.05 0.00 0.00 2.27
5103 5403 6.551227 ACATGTCAGGTGCTAGATGTAGAATA 59.449 38.462 0.05 0.00 0.00 1.75
5104 5404 5.365025 ACATGTCAGGTGCTAGATGTAGAAT 59.635 40.000 0.05 0.00 0.00 2.40
5117 5417 2.361610 GGGCCCACATGTCAGGTG 60.362 66.667 19.95 10.67 36.03 4.00
5248 8467 3.123620 GCGGAGGCAGAGCACTTG 61.124 66.667 0.00 0.00 39.62 3.16
5264 8483 0.916845 AGAAAGGGGAGAAGAGGGGC 60.917 60.000 0.00 0.00 0.00 5.80
5266 8485 1.208706 GGAGAAAGGGGAGAAGAGGG 58.791 60.000 0.00 0.00 0.00 4.30
5267 8486 1.557371 GTGGAGAAAGGGGAGAAGAGG 59.443 57.143 0.00 0.00 0.00 3.69
5268 8487 2.235898 CTGTGGAGAAAGGGGAGAAGAG 59.764 54.545 0.00 0.00 0.00 2.85
5269 8488 2.260822 CTGTGGAGAAAGGGGAGAAGA 58.739 52.381 0.00 0.00 0.00 2.87
5270 8489 1.981495 ACTGTGGAGAAAGGGGAGAAG 59.019 52.381 0.00 0.00 0.00 2.85
5271 8490 1.978580 GACTGTGGAGAAAGGGGAGAA 59.021 52.381 0.00 0.00 0.00 2.87
5272 8491 1.645710 GACTGTGGAGAAAGGGGAGA 58.354 55.000 0.00 0.00 0.00 3.71
5273 8492 0.615850 GGACTGTGGAGAAAGGGGAG 59.384 60.000 0.00 0.00 0.00 4.30
5274 8493 0.104672 TGGACTGTGGAGAAAGGGGA 60.105 55.000 0.00 0.00 0.00 4.81
5292 8511 1.002033 GTGTGCCTCTTCTGTTGCTTG 60.002 52.381 0.00 0.00 0.00 4.01
5304 8523 4.507710 TCTTATTGAGATGTGTGTGCCTC 58.492 43.478 0.00 0.00 0.00 4.70
5306 8525 5.355071 TGAATCTTATTGAGATGTGTGTGCC 59.645 40.000 0.00 0.00 44.41 5.01
5307 8526 6.314648 TCTGAATCTTATTGAGATGTGTGTGC 59.685 38.462 0.00 0.00 44.41 4.57
5308 8527 7.763071 TCTCTGAATCTTATTGAGATGTGTGTG 59.237 37.037 0.00 0.00 44.41 3.82
5309 8528 7.845037 TCTCTGAATCTTATTGAGATGTGTGT 58.155 34.615 0.00 0.00 44.41 3.72
5310 8529 8.713737 TTCTCTGAATCTTATTGAGATGTGTG 57.286 34.615 0.00 0.00 44.41 3.82
5311 8530 9.545105 GATTCTCTGAATCTTATTGAGATGTGT 57.455 33.333 11.68 0.00 44.41 3.72
5312 8531 9.543783 TGATTCTCTGAATCTTATTGAGATGTG 57.456 33.333 17.60 0.00 44.41 3.21
5313 8532 9.545105 GTGATTCTCTGAATCTTATTGAGATGT 57.455 33.333 17.60 0.00 44.41 3.06
5314 8533 8.991026 GGTGATTCTCTGAATCTTATTGAGATG 58.009 37.037 17.60 0.00 44.41 2.90
5316 8535 8.316497 AGGTGATTCTCTGAATCTTATTGAGA 57.684 34.615 17.60 0.00 39.13 3.27
5317 8536 8.202811 TGAGGTGATTCTCTGAATCTTATTGAG 58.797 37.037 17.60 0.00 34.98 3.02
5318 8537 7.984050 GTGAGGTGATTCTCTGAATCTTATTGA 59.016 37.037 17.60 0.00 34.98 2.57
5319 8538 7.226325 GGTGAGGTGATTCTCTGAATCTTATTG 59.774 40.741 17.60 0.00 34.98 1.90
5320 8539 7.092712 TGGTGAGGTGATTCTCTGAATCTTATT 60.093 37.037 17.60 5.03 34.98 1.40
5321 8540 6.385176 TGGTGAGGTGATTCTCTGAATCTTAT 59.615 38.462 17.60 6.63 34.98 1.73
5322 8541 5.721480 TGGTGAGGTGATTCTCTGAATCTTA 59.279 40.000 17.60 0.55 34.98 2.10
5336 8559 0.326238 GGGGGATAGTGGTGAGGTGA 60.326 60.000 0.00 0.00 0.00 4.02
5343 8566 3.087906 GCACCGGGGGATAGTGGT 61.088 66.667 5.47 0.00 34.29 4.16
5344 8567 3.873812 GGCACCGGGGGATAGTGG 61.874 72.222 5.47 0.00 32.05 4.00
5345 8568 3.087253 TGGCACCGGGGGATAGTG 61.087 66.667 5.47 0.00 34.58 2.74
5346 8569 2.768344 CTGGCACCGGGGGATAGT 60.768 66.667 5.47 0.00 0.00 2.12
5347 8570 2.768344 ACTGGCACCGGGGGATAG 60.768 66.667 5.47 0.00 0.00 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.