Multiple sequence alignment - TraesCS2A01G033100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G033100 chr2A 100.000 2372 0 0 1 2372 14941145 14938774 0.000000e+00 4381.0
1 TraesCS2A01G033100 chr2A 86.147 231 26 5 2043 2269 14945617 14945389 6.550000e-61 244.0
2 TraesCS2A01G033100 chr4B 93.063 1773 97 9 1 1770 467916530 467914781 0.000000e+00 2569.0
3 TraesCS2A01G033100 chr4B 84.298 363 18 16 2042 2372 438148213 438147858 3.800000e-83 318.0
4 TraesCS2A01G033100 chr4B 84.022 363 19 15 2042 2372 527743973 527744328 1.770000e-81 313.0
5 TraesCS2A01G033100 chr4B 88.412 233 19 7 2042 2268 97561297 97561067 8.350000e-70 274.0
6 TraesCS2A01G033100 chr4B 88.360 189 9 5 1844 2021 438148472 438148286 5.130000e-52 215.0
7 TraesCS2A01G033100 chr4B 87.831 189 10 5 1844 2021 527743402 527743588 2.390000e-50 209.0
8 TraesCS2A01G033100 chr4B 80.876 251 16 4 2153 2372 69295607 69295358 4.050000e-38 169.0
9 TraesCS2A01G033100 chr4A 91.528 1865 112 24 2 1847 83319210 83321047 0.000000e+00 2527.0
10 TraesCS2A01G033100 chr4D 91.179 1315 80 18 525 1822 380460843 380459548 0.000000e+00 1753.0
11 TraesCS2A01G033100 chr4D 88.559 236 14 5 1 232 380462255 380462029 8.350000e-70 274.0
12 TraesCS2A01G033100 chr4D 98.980 98 1 0 263 360 380460948 380460851 2.420000e-40 176.0
13 TraesCS2A01G033100 chr1D 90.000 230 20 3 2042 2269 469519530 469519302 6.410000e-76 294.0
14 TraesCS2A01G033100 chr1D 85.946 185 14 4 1844 2018 469520335 469520153 1.120000e-43 187.0
15 TraesCS2A01G033100 chr6D 89.130 230 22 3 2042 2269 472098478 472098250 1.390000e-72 283.0
16 TraesCS2A01G033100 chr6A 87.773 229 23 4 2042 2269 46978740 46978964 1.810000e-66 263.0
17 TraesCS2A01G033100 chr1B 86.463 229 28 3 2042 2269 681549443 681549217 5.060000e-62 248.0
18 TraesCS2A01G033100 chr1B 86.147 231 28 4 2042 2269 681455725 681455954 1.820000e-61 246.0
19 TraesCS2A01G033100 chr1B 96.226 53 2 0 2320 2372 456155000 456154948 1.170000e-13 87.9
20 TraesCS2A01G033100 chr3A 83.889 180 21 6 1844 2018 737367451 737367275 5.240000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G033100 chr2A 14938774 14941145 2371 True 4381.000000 4381 100.0000 1 2372 1 chr2A.!!$R1 2371
1 TraesCS2A01G033100 chr4B 467914781 467916530 1749 True 2569.000000 2569 93.0630 1 1770 1 chr4B.!!$R3 1769
2 TraesCS2A01G033100 chr4B 438147858 438148472 614 True 266.500000 318 86.3290 1844 2372 2 chr4B.!!$R4 528
3 TraesCS2A01G033100 chr4B 527743402 527744328 926 False 261.000000 313 85.9265 1844 2372 2 chr4B.!!$F1 528
4 TraesCS2A01G033100 chr4A 83319210 83321047 1837 False 2527.000000 2527 91.5280 2 1847 1 chr4A.!!$F1 1845
5 TraesCS2A01G033100 chr4D 380459548 380462255 2707 True 734.333333 1753 92.9060 1 1822 3 chr4D.!!$R1 1821
6 TraesCS2A01G033100 chr1D 469519302 469520335 1033 True 240.500000 294 87.9730 1844 2269 2 chr1D.!!$R1 425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 1580 0.107017 AAGGTCGGCCATGGAATCTG 60.107 55.0 18.4 2.71 37.19 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2341 4410 1.67968 CAGGCAGGGCATACTTTCATG 59.32 52.381 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 66 6.364568 TTTCTTGGTAGTTAGAAGGGGTAC 57.635 41.667 0.00 0.00 32.43 3.34
110 115 2.075338 CAATCGTGGCAATTTTTGGGG 58.925 47.619 0.00 0.00 0.00 4.96
163 168 4.724279 TCCTTTTAGAAGCTGGGAAACT 57.276 40.909 0.00 0.00 0.00 2.66
245 1313 8.307582 ACTGAACTTACTACAATATAGCCAGT 57.692 34.615 0.00 0.00 0.00 4.00
467 1535 7.301868 TGAAGGCACCAGAATTTTTAATCTT 57.698 32.000 0.00 0.00 0.00 2.40
504 1572 5.067283 GTGTTAAATATTGAAGGTCGGCCAT 59.933 40.000 9.71 0.00 37.19 4.40
505 1573 5.067153 TGTTAAATATTGAAGGTCGGCCATG 59.933 40.000 9.71 0.00 37.19 3.66
512 1580 0.107017 AAGGTCGGCCATGGAATCTG 60.107 55.000 18.40 2.71 37.19 2.90
548 1616 8.582433 TGCTTACGACGATAATAAAATCATGA 57.418 30.769 0.00 0.00 0.00 3.07
591 1659 3.497115 TTGGTGGCCTGGTGCAGA 61.497 61.111 3.32 0.00 43.89 4.26
593 1661 2.439156 GGTGGCCTGGTGCAGATC 60.439 66.667 3.32 0.00 43.89 2.75
602 1672 3.498481 GCCTGGTGCAGATCCCATATAAA 60.498 47.826 0.00 0.00 40.77 1.40
630 1700 9.177608 ACATTTATAGCACACATTACTGTTGAT 57.822 29.630 0.00 0.00 31.62 2.57
638 1708 9.102757 AGCACACATTACTGTTGATCTATAAAG 57.897 33.333 0.00 0.00 31.62 1.85
696 1766 2.536066 TGCTTCTGCCTTGTACCTCTA 58.464 47.619 0.00 0.00 38.71 2.43
697 1767 2.233922 TGCTTCTGCCTTGTACCTCTAC 59.766 50.000 0.00 0.00 38.71 2.59
755 1825 3.243501 GGTCCGTTTTTCTTGGGTAAACC 60.244 47.826 0.00 0.00 40.81 3.27
765 1835 1.001269 GGGTAAACCTGAGGGCCAC 60.001 63.158 6.18 0.00 35.85 5.01
766 1836 1.001269 GGTAAACCTGAGGGCCACC 60.001 63.158 6.18 2.46 35.63 4.61
767 1837 1.765074 GTAAACCTGAGGGCCACCA 59.235 57.895 6.18 1.81 40.13 4.17
770 1840 2.445492 AAACCTGAGGGCCACCATGG 62.445 60.000 11.19 11.19 41.55 3.66
850 1921 3.611766 AGATTTCCACTTACCAGTCGG 57.388 47.619 0.00 0.00 38.77 4.79
978 2049 9.725019 TTATGCATACACTAATATTTCCTCTGG 57.275 33.333 5.74 0.00 0.00 3.86
1005 2076 4.585879 AGCAAGTAACCGTTTGGATGTAT 58.414 39.130 0.00 0.00 39.21 2.29
1104 2187 1.895231 ACCGGTCAAAACGCCTTCC 60.895 57.895 0.00 0.00 0.00 3.46
1107 2190 1.281656 GGTCAAAACGCCTTCCACG 59.718 57.895 0.00 0.00 0.00 4.94
1138 2221 4.505039 GGGCAAGTTCTCTAACCAAGAAGA 60.505 45.833 0.00 0.00 36.15 2.87
1206 2289 1.229428 CCACAGCGCAAAAGAAGAGA 58.771 50.000 11.47 0.00 0.00 3.10
1232 2315 1.296727 AGCGACATAGATGACGACGA 58.703 50.000 16.53 0.00 45.97 4.20
1233 2316 1.261885 AGCGACATAGATGACGACGAG 59.738 52.381 16.53 0.00 45.97 4.18
1234 2317 1.660614 GCGACATAGATGACGACGAGG 60.661 57.143 16.53 0.00 45.97 4.63
1235 2318 1.865340 CGACATAGATGACGACGAGGA 59.135 52.381 0.00 0.00 45.97 3.71
1236 2319 2.348685 CGACATAGATGACGACGAGGAC 60.349 54.545 0.00 0.00 45.97 3.85
1237 2320 1.598132 ACATAGATGACGACGAGGACG 59.402 52.381 0.00 0.00 45.75 4.79
1238 2321 1.865340 CATAGATGACGACGAGGACGA 59.135 52.381 0.00 0.00 42.66 4.20
1239 2322 1.284657 TAGATGACGACGAGGACGAC 58.715 55.000 0.00 0.00 42.66 4.34
1281 2373 1.804746 GCCACAAAGGGAAAAACCACG 60.805 52.381 0.00 0.00 41.20 4.94
1282 2374 1.751924 CCACAAAGGGAAAAACCACGA 59.248 47.619 0.00 0.00 41.20 4.35
1369 2461 3.359950 CCTAAGAAGCCCAAGAAGCAAT 58.640 45.455 0.00 0.00 0.00 3.56
1377 2469 4.864726 AGCCCAAGAAGCAATAGATTTCT 58.135 39.130 0.00 0.00 32.80 2.52
1442 2534 4.699735 TGTTACCATTGACATTGTGCTAGG 59.300 41.667 0.00 0.00 0.00 3.02
1461 2553 6.323225 TGCTAGGTCAGTATAACCTTAGGAAC 59.677 42.308 4.77 0.00 44.93 3.62
1474 2566 4.286291 ACCTTAGGAACCGATGAGACTTTT 59.714 41.667 4.77 0.00 0.00 2.27
1475 2567 5.482878 ACCTTAGGAACCGATGAGACTTTTA 59.517 40.000 4.77 0.00 0.00 1.52
1476 2568 6.156429 ACCTTAGGAACCGATGAGACTTTTAT 59.844 38.462 4.77 0.00 0.00 1.40
1477 2569 7.048512 CCTTAGGAACCGATGAGACTTTTATT 58.951 38.462 0.00 0.00 0.00 1.40
1478 2570 7.553044 CCTTAGGAACCGATGAGACTTTTATTT 59.447 37.037 0.00 0.00 0.00 1.40
1479 2571 6.986904 AGGAACCGATGAGACTTTTATTTC 57.013 37.500 0.00 0.00 0.00 2.17
1493 2585 9.620259 AGACTTTTATTTCTTCTTCTTCTGTGT 57.380 29.630 0.00 0.00 0.00 3.72
1509 2601 1.336795 TGTGTACTGACGCTGTGATGG 60.337 52.381 0.00 0.00 36.98 3.51
1558 2651 1.402968 GGTGTGAAGCGATGCAATGAT 59.597 47.619 0.00 0.00 0.00 2.45
1574 2667 4.883585 GCAATGATTCCATGTCTTCCAGTA 59.116 41.667 0.00 0.00 32.36 2.74
1598 2691 5.523916 ACTTGCGTAGATTCATGTTATCCAC 59.476 40.000 0.00 0.00 0.00 4.02
1601 2694 3.428870 CGTAGATTCATGTTATCCACCGC 59.571 47.826 0.00 0.00 0.00 5.68
1606 2699 1.206132 TCATGTTATCCACCGCGAACT 59.794 47.619 8.23 0.00 0.00 3.01
1656 2749 8.871686 CAGTACTTGCATAGTGATACATGTTA 57.128 34.615 2.30 0.00 37.73 2.41
1657 2750 8.755941 CAGTACTTGCATAGTGATACATGTTAC 58.244 37.037 2.30 1.33 37.73 2.50
1684 2777 3.262420 TCGCTTTGAATTCTACTGAGGC 58.738 45.455 7.05 1.41 0.00 4.70
1693 2786 3.402628 TTCTACTGAGGCTGACAAACC 57.597 47.619 0.00 0.00 0.00 3.27
1694 2787 2.325484 TCTACTGAGGCTGACAAACCA 58.675 47.619 0.00 0.00 0.00 3.67
1775 2870 9.481340 AAAGCTAAATGTTTCTTCTCCATTTTC 57.519 29.630 0.00 0.00 39.04 2.29
1776 2871 7.606349 AGCTAAATGTTTCTTCTCCATTTTCC 58.394 34.615 0.00 0.00 39.04 3.13
1784 2879 5.982890 TCTTCTCCATTTTCCCATCAAAC 57.017 39.130 0.00 0.00 0.00 2.93
1785 2880 4.458989 TCTTCTCCATTTTCCCATCAAACG 59.541 41.667 0.00 0.00 0.00 3.60
1792 2887 4.764679 TTTTCCCATCAAACGACAGATG 57.235 40.909 0.00 0.00 40.94 2.90
1824 2919 5.029014 CGCACGTAGTAATATAGCATCTCC 58.971 45.833 0.00 0.00 41.61 3.71
1839 2934 0.033208 TCTCCCCCAACCAATGCATC 60.033 55.000 0.00 0.00 0.00 3.91
1872 2967 4.761739 TGACCAAGATCTTCAAATGTCCAC 59.238 41.667 4.57 0.00 0.00 4.02
1873 2968 4.728772 ACCAAGATCTTCAAATGTCCACA 58.271 39.130 4.57 0.00 0.00 4.17
1874 2969 5.327732 ACCAAGATCTTCAAATGTCCACAT 58.672 37.500 4.57 0.00 38.41 3.21
1875 2970 6.484288 ACCAAGATCTTCAAATGTCCACATA 58.516 36.000 4.57 0.00 35.10 2.29
1876 2971 6.600822 ACCAAGATCTTCAAATGTCCACATAG 59.399 38.462 4.57 0.00 35.10 2.23
1877 2972 6.825213 CCAAGATCTTCAAATGTCCACATAGA 59.175 38.462 4.57 0.00 35.10 1.98
1879 2974 7.192852 AGATCTTCAAATGTCCACATAGACT 57.807 36.000 0.00 0.00 37.66 3.24
1947 3048 9.063484 ACTTCCTCCTTCTTTTCCTTAGATAAT 57.937 33.333 0.00 0.00 0.00 1.28
1996 3098 5.910637 TCGTGTGTTGTTCAGTATAAACC 57.089 39.130 0.00 0.00 0.00 3.27
2051 4087 3.070018 CCTCAACTGGTGTCTCATTGTC 58.930 50.000 0.00 0.00 0.00 3.18
2106 4142 2.689983 GCATCTTCAACATTACCCTGGG 59.310 50.000 12.28 12.28 0.00 4.45
2215 4253 8.022550 TCAGTATCATGTACTGTTTTGCATTTG 58.977 33.333 23.17 6.21 43.84 2.32
2220 4258 5.459536 TGTACTGTTTTGCATTTGCCATA 57.540 34.783 0.00 0.00 41.18 2.74
2309 4371 8.766994 ATAGTACAGATTTAATTGGCCATGTT 57.233 30.769 6.09 7.79 0.00 2.71
2316 4378 4.454728 TTAATTGGCCATGTTCTTGCTC 57.545 40.909 6.09 0.00 0.00 4.26
2324 4393 3.375299 GCCATGTTCTTGCTCTTACGATT 59.625 43.478 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 38 7.232737 ACCCCTTCTAACTACCAAGAAATTTTG 59.767 37.037 0.00 0.00 31.61 2.44
61 66 2.370189 GACCCATCTAACTCATCCCCAG 59.630 54.545 0.00 0.00 0.00 4.45
93 98 0.965439 CTCCCCAAAAATTGCCACGA 59.035 50.000 0.00 0.00 0.00 4.35
94 99 0.037419 CCTCCCCAAAAATTGCCACG 60.037 55.000 0.00 0.00 0.00 4.94
129 134 7.182206 AGCTTCTAAAAGGAACTCTAACCCATA 59.818 37.037 0.00 0.00 38.49 2.74
245 1313 4.460034 TCGAGCACAGTGGTATAAGTAACA 59.540 41.667 4.92 0.00 0.00 2.41
253 1321 1.545841 TCAGTCGAGCACAGTGGTAT 58.454 50.000 4.92 0.00 0.00 2.73
447 1515 6.587608 CAGTGAAGATTAAAAATTCTGGTGCC 59.412 38.462 0.00 0.00 0.00 5.01
499 1567 2.077687 ACCATTCAGATTCCATGGCC 57.922 50.000 6.96 0.00 41.21 5.36
504 1572 6.855763 AAGCAAATAACCATTCAGATTCCA 57.144 33.333 0.00 0.00 0.00 3.53
505 1573 6.912591 CGTAAGCAAATAACCATTCAGATTCC 59.087 38.462 0.00 0.00 0.00 3.01
512 1580 5.459110 TCGTCGTAAGCAAATAACCATTC 57.541 39.130 0.00 0.00 37.18 2.67
545 1613 9.185680 AGTTTTTGGAAAACACTACTAAGTCAT 57.814 29.630 16.01 0.00 31.97 3.06
602 1672 9.624697 CAACAGTAATGTGTGCTATAAATGTTT 57.375 29.630 0.00 0.00 0.00 2.83
630 1700 3.009033 ACACCACCAAGCTGCTTTATAGA 59.991 43.478 13.10 0.00 0.00 1.98
638 1708 1.526917 ACTCACACCACCAAGCTGC 60.527 57.895 0.00 0.00 0.00 5.25
696 1766 7.222611 GCAGAACTTGTTTCATAACAACAATGT 59.777 33.333 0.00 0.00 46.46 2.71
697 1767 7.436080 AGCAGAACTTGTTTCATAACAACAATG 59.564 33.333 0.00 0.00 46.46 2.82
755 1825 3.341629 ACCCATGGTGGCCCTCAG 61.342 66.667 11.73 0.00 35.79 3.35
765 1835 2.322355 GTCACATCTCTGACCCATGG 57.678 55.000 4.14 4.14 35.44 3.66
850 1921 3.802948 AGTGTATGATTCGGTCAGGAC 57.197 47.619 0.00 0.00 40.92 3.85
978 2049 3.560896 TCCAAACGGTTACTTGCTTACAC 59.439 43.478 0.00 0.00 0.00 2.90
1005 2076 3.707316 CAAACCCCATTCCATCAACCTA 58.293 45.455 0.00 0.00 0.00 3.08
1035 2106 2.238084 AGACCTCTGTAGCCACATCA 57.762 50.000 0.00 0.00 33.14 3.07
1104 2187 0.886490 AACTTGCCCTTCTCTGCGTG 60.886 55.000 0.00 0.00 0.00 5.34
1107 2190 1.447945 GAGAACTTGCCCTTCTCTGC 58.552 55.000 7.53 0.00 40.34 4.26
1127 2210 6.640518 CCTAACAGCAGTATCTTCTTGGTTA 58.359 40.000 0.00 0.00 0.00 2.85
1138 2221 5.531122 TTCTTATCGCCTAACAGCAGTAT 57.469 39.130 0.00 0.00 0.00 2.12
1220 2303 1.284657 GTCGTCCTCGTCGTCATCTA 58.715 55.000 0.00 0.00 38.33 1.98
1232 2315 2.589798 TTTGACAAAGTCGTCGTCCT 57.410 45.000 0.00 0.00 38.84 3.85
1233 2316 2.286008 GGTTTTGACAAAGTCGTCGTCC 60.286 50.000 0.10 0.00 38.84 4.79
1234 2317 2.349275 TGGTTTTGACAAAGTCGTCGTC 59.651 45.455 0.10 0.00 38.84 4.20
1235 2318 2.348660 TGGTTTTGACAAAGTCGTCGT 58.651 42.857 0.10 0.00 38.84 4.34
1236 2319 3.095738 GTTGGTTTTGACAAAGTCGTCG 58.904 45.455 0.10 0.00 38.84 5.12
1237 2320 4.142773 TGAGTTGGTTTTGACAAAGTCGTC 60.143 41.667 0.10 0.00 34.95 4.20
1238 2321 3.754323 TGAGTTGGTTTTGACAAAGTCGT 59.246 39.130 0.10 0.00 34.95 4.34
1239 2322 4.342772 CTGAGTTGGTTTTGACAAAGTCG 58.657 43.478 0.10 0.00 34.95 4.18
1240 2323 4.105486 GCTGAGTTGGTTTTGACAAAGTC 58.895 43.478 0.10 0.00 0.00 3.01
1281 2373 4.900635 TGCCTTCTTTCTCTTTTGTGTC 57.099 40.909 0.00 0.00 0.00 3.67
1282 2374 5.136105 AGATGCCTTCTTTCTCTTTTGTGT 58.864 37.500 0.00 0.00 0.00 3.72
1309 2401 1.368493 CGTCGTCGTCGTCTGTGTT 60.368 57.895 3.67 0.00 38.33 3.32
1332 2424 2.093306 TAGGCATGACAAAGTCACCG 57.907 50.000 0.00 0.00 45.65 4.94
1333 2425 3.674997 TCTTAGGCATGACAAAGTCACC 58.325 45.455 0.00 0.63 45.65 4.02
1334 2426 4.378874 GCTTCTTAGGCATGACAAAGTCAC 60.379 45.833 0.00 0.00 45.65 3.67
1442 2534 5.841957 TCGGTTCCTAAGGTTATACTGAC 57.158 43.478 0.00 0.00 0.00 3.51
1461 2553 8.485976 AGAAGAAGAAATAAAAGTCTCATCGG 57.514 34.615 0.00 0.00 0.00 4.18
1474 2566 7.808381 CGTCAGTACACAGAAGAAGAAGAAATA 59.192 37.037 0.00 0.00 0.00 1.40
1475 2567 6.642950 CGTCAGTACACAGAAGAAGAAGAAAT 59.357 38.462 0.00 0.00 0.00 2.17
1476 2568 5.977725 CGTCAGTACACAGAAGAAGAAGAAA 59.022 40.000 0.00 0.00 0.00 2.52
1477 2569 5.520632 CGTCAGTACACAGAAGAAGAAGAA 58.479 41.667 0.00 0.00 0.00 2.52
1478 2570 4.556898 GCGTCAGTACACAGAAGAAGAAGA 60.557 45.833 0.00 0.00 0.00 2.87
1479 2571 3.670991 GCGTCAGTACACAGAAGAAGAAG 59.329 47.826 0.00 0.00 0.00 2.85
1493 2585 1.842052 TACCCATCACAGCGTCAGTA 58.158 50.000 0.00 0.00 0.00 2.74
1509 2601 6.635030 AGTTTTGTTCCAGAAGTTCATACC 57.365 37.500 5.50 0.00 0.00 2.73
1536 2629 2.009051 CATTGCATCGCTTCACACCTA 58.991 47.619 0.00 0.00 0.00 3.08
1558 2651 3.674997 GCAAGTACTGGAAGACATGGAA 58.325 45.455 0.00 0.00 37.43 3.53
1598 2691 4.628333 TCAATAGTTTCCTAAAGTTCGCGG 59.372 41.667 6.13 0.00 0.00 6.46
1601 2694 8.029642 ACATGTCAATAGTTTCCTAAAGTTCG 57.970 34.615 0.00 0.00 0.00 3.95
1606 2699 7.446931 TGCAAGACATGTCAATAGTTTCCTAAA 59.553 33.333 27.02 0.00 0.00 1.85
1641 2734 8.198109 AGCGAAAAGAGTAACATGTATCACTAT 58.802 33.333 0.00 0.00 0.00 2.12
1649 2742 6.371809 TTCAAAGCGAAAAGAGTAACATGT 57.628 33.333 0.00 0.00 0.00 3.21
1656 2749 6.706270 TCAGTAGAATTCAAAGCGAAAAGAGT 59.294 34.615 8.44 0.00 37.12 3.24
1657 2750 7.121974 TCAGTAGAATTCAAAGCGAAAAGAG 57.878 36.000 8.44 0.00 37.12 2.85
1684 2777 4.778534 AAATGATGCTCTGGTTTGTCAG 57.221 40.909 0.00 0.00 36.17 3.51
1693 2786 5.649395 TCTTTGGGTAGAAAATGATGCTCTG 59.351 40.000 0.00 0.00 0.00 3.35
1694 2787 5.819991 TCTTTGGGTAGAAAATGATGCTCT 58.180 37.500 0.00 0.00 0.00 4.09
1746 2840 7.581213 TGGAGAAGAAACATTTAGCTTTCAA 57.419 32.000 0.00 0.00 0.00 2.69
1755 2849 6.745794 TGGGAAAATGGAGAAGAAACATTT 57.254 33.333 0.00 0.00 44.18 2.32
1775 2870 3.488047 GCATTCATCTGTCGTTTGATGGG 60.488 47.826 11.83 6.12 40.13 4.00
1776 2871 3.376234 AGCATTCATCTGTCGTTTGATGG 59.624 43.478 11.83 1.94 40.13 3.51
1811 2906 3.335748 TGGTTGGGGGAGATGCTATATT 58.664 45.455 0.00 0.00 0.00 1.28
1812 2907 3.004126 TGGTTGGGGGAGATGCTATAT 57.996 47.619 0.00 0.00 0.00 0.86
1824 2919 3.080045 GCGGATGCATTGGTTGGGG 62.080 63.158 0.00 0.00 42.15 4.96
1839 2934 3.803082 CTTGGTCATGGCGTGCGG 61.803 66.667 0.65 0.00 0.00 5.69
1872 2967 5.965922 TCTGTCATGGTTACACAGTCTATG 58.034 41.667 10.33 0.00 38.94 2.23
1873 2968 5.127845 CCTCTGTCATGGTTACACAGTCTAT 59.872 44.000 10.33 0.00 38.94 1.98
1874 2969 4.462834 CCTCTGTCATGGTTACACAGTCTA 59.537 45.833 10.33 0.00 38.94 2.59
1875 2970 3.259374 CCTCTGTCATGGTTACACAGTCT 59.741 47.826 10.33 0.00 38.94 3.24
1876 2971 3.006967 ACCTCTGTCATGGTTACACAGTC 59.993 47.826 10.33 0.00 38.94 3.51
1877 2972 2.972713 ACCTCTGTCATGGTTACACAGT 59.027 45.455 10.33 0.00 38.94 3.55
1879 2974 3.239449 AGACCTCTGTCATGGTTACACA 58.761 45.455 0.00 0.00 44.33 3.72
1885 2984 3.906846 AGAAAAGAGACCTCTGTCATGGT 59.093 43.478 0.00 0.00 44.33 3.55
1951 3052 7.287927 ACGAAGGAATATACTCTCCTCAATCAA 59.712 37.037 0.00 0.00 41.40 2.57
1964 3065 6.367969 ACTGAACAACACACGAAGGAATATAC 59.632 38.462 0.00 0.00 0.00 1.47
1996 3098 2.104111 TCAGGGTACAACCAACTCTGTG 59.896 50.000 3.24 0.00 44.35 3.66
2051 4087 3.570926 ACAAGCATGCATTCTTGACTG 57.429 42.857 35.48 17.51 41.50 3.51
2166 4203 7.915508 TGAAATAATATGTTCTGCAACTACGG 58.084 34.615 0.00 0.00 33.17 4.02
2341 4410 1.679680 CAGGCAGGGCATACTTTCATG 59.320 52.381 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.