AutoCloner

Multiple sequence alignment - TraesCS2A01G033000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G033000	chr2A	100.000	2600	0	0	1	2600	14896422	14899021	0.000000e+00	4802.0
1	TraesCS2A01G033000	chr2A	85.769	520	66	7	1934	2451	80261262	80260749	6.330000e-151	544.0
2	TraesCS2A01G033000	chr2A	98.182	55	0	1	177	230	14896548	14896602	7.660000e-16	95.3
3	TraesCS2A01G033000	chr2A	98.182	55	0	1	127	181	14896598	14896651	7.660000e-16	95.3
4	TraesCS2A01G033000	chrUn	93.540	1579	71	15	177	1740	18080684	18079122	0.000000e+00	2322.0
5	TraesCS2A01G033000	chrUn	92.265	181	13	1	1	181	18080810	18080631	3.320000e-64	255.0
6	TraesCS2A01G033000	chrUn	87.117	163	10	4	1747	1899	18078970	18078809	9.560000e-40	174.0
7	TraesCS2A01G033000	chr2D	89.793	1646	114	37	469	2096	12747788	12749397	0.000000e+00	2060.0
8	TraesCS2A01G033000	chr2D	92.188	256	9	3	177	431	12747546	12747791	4.120000e-93	351.0
9	TraesCS2A01G033000	chr2D	94.340	212	12	0	2389	2600	12751098	12751309	2.500000e-85	326.0
10	TraesCS2A01G033000	chr2D	92.818	181	12	1	1	181	12747420	12747599	7.140000e-66	261.0
11	TraesCS2A01G033000	chr6D	89.216	510	50	4	1934	2442	390794454	390793949	1.310000e-177	632.0
12	TraesCS2A01G033000	chr6D	87.719	513	52	8	1934	2444	11757633	11758136	2.880000e-164	588.0
13	TraesCS2A01G033000	chr6D	86.747	498	57	7	1953	2446	69306805	69306313	1.760000e-151	545.0
14	TraesCS2A01G033000	chr3D	87.992	508	56	5	1934	2441	21705442	21705944	1.720000e-166	595.0
15	TraesCS2A01G033000	chr4A	87.033	509	63	3	1934	2442	671568278	671567773	2.900000e-159	571.0
16	TraesCS2A01G033000	chr7D	86.770	514	61	6	1934	2442	257512994	257512483	1.350000e-157	566.0
17	TraesCS2A01G033000	chr6B	86.869	495	56	7	1941	2433	21447115	21446628	1.760000e-151	545.0
18	TraesCS2A01G033000	chr3B	85.631	515	64	7	1938	2451	791268248	791267743	1.370000e-147	532.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G033000	chr2A	14896422	14899021	2599	False	1664.2	4802	98.78800	1	2600	3	chr2A.!!$F1	2599
1	TraesCS2A01G033000	chr2A	80260749	80261262	513	True	544.0	544	85.76900	1934	2451	1	chr2A.!!$R1	517
2	TraesCS2A01G033000	chrUn	18078809	18080810	2001	True	917.0	2322	90.97400	1	1899	3	chrUn.!!$R1	1898
3	TraesCS2A01G033000	chr2D	12747420	12751309	3889	False	749.5	2060	92.28475	1	2600	4	chr2D.!!$F1	2599
4	TraesCS2A01G033000	chr6D	390793949	390794454	505	True	632.0	632	89.21600	1934	2442	1	chr6D.!!$R2	508
5	TraesCS2A01G033000	chr6D	11757633	11758136	503	False	588.0	588	87.71900	1934	2444	1	chr6D.!!$F1	510
6	TraesCS2A01G033000	chr3D	21705442	21705944	502	False	595.0	595	87.99200	1934	2441	1	chr3D.!!$F1	507
7	TraesCS2A01G033000	chr4A	671567773	671568278	505	True	571.0	571	87.03300	1934	2442	1	chr4A.!!$R1	508
8	TraesCS2A01G033000	chr7D	257512483	257512994	511	True	566.0	566	86.77000	1934	2442	1	chr7D.!!$R1	508
9	TraesCS2A01G033000	chr3B	791267743	791268248	505	True	532.0	532	85.63100	1938	2451	1	chr3B.!!$R1	513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
233	234	0.248907	ATCGATACAGGTCCGCGTTG	60.249	55.0	4.92	0.09	0.0	4.1	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2066	2240	0.735978	ATGCGAGAATGCGACGACAA	60.736	50.0	0.0	0.0	37.81	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	0.969149	TGTGGTGCTGACACTCTAGG	59.031	55.000	7.34	0.00	46.57	3.02
29	30	2.361757	CTGACACTCTAGGGAGATGCTG	59.638	54.545	0.00	0.00	41.86	4.41
36	37	1.067821	CTAGGGAGATGCTGACCGTTC	59.932	57.143	0.00	0.00	0.00	3.95
129	130	2.308722	GCCCCCTGGTTCATCTCCA	61.309	63.158	0.00	0.00	0.00	3.86
160	161	4.835199	AAAAGTATGTTCGGATCGTTCG	57.165	40.909	0.00	0.00	0.00	3.95
161	162	2.486951	AGTATGTTCGGATCGTTCGG	57.513	50.000	0.00	0.00	0.00	4.30
162	163	0.850856	GTATGTTCGGATCGTTCGGC	59.149	55.000	0.00	0.00	0.00	5.54
163	164	0.593008	TATGTTCGGATCGTTCGGCG	60.593	55.000	0.00	0.00	43.01	6.46
164	165	3.252484	GTTCGGATCGTTCGGCGG	61.252	66.667	7.21	0.00	41.72	6.13
165	166	3.442167	TTCGGATCGTTCGGCGGA	61.442	61.111	7.21	0.00	41.72	5.54
166	167	2.777972	TTCGGATCGTTCGGCGGAT	61.778	57.895	7.21	1.14	41.72	4.18
167	168	2.672908	TTCGGATCGTTCGGCGGATC	62.673	60.000	7.21	11.48	41.72	3.36
168	169	2.729862	GGATCGTTCGGCGGATCG	60.730	66.667	16.13	16.13	41.72	3.69
169	170	2.330393	GATCGTTCGGCGGATCGA	59.670	61.111	23.91	23.91	45.37	3.59
170	171	3.039988	ATCGTTCGGCGGATCGAT	58.960	55.556	25.65	25.65	45.18	3.59
171	172	3.735143	TCGTTCGGCGGATCGATA	58.265	55.556	19.66	3.34	38.93	2.92
172	173	1.280746	TCGTTCGGCGGATCGATAC	59.719	57.895	19.66	0.00	38.93	2.24
173	174	1.009335	CGTTCGGCGGATCGATACA	60.009	57.895	17.02	0.00	39.03	2.29
174	175	0.997226	CGTTCGGCGGATCGATACAG	60.997	60.000	17.02	1.74	39.03	2.74
175	176	0.663568	GTTCGGCGGATCGATACAGG	60.664	60.000	8.69	0.00	39.03	4.00
176	177	1.105167	TTCGGCGGATCGATACAGGT	61.105	55.000	8.69	0.00	39.03	4.00
177	178	1.081376	CGGCGGATCGATACAGGTC	60.081	63.158	8.69	0.00	0.00	3.85
178	179	1.289380	GGCGGATCGATACAGGTCC	59.711	63.158	8.69	0.00	0.00	4.46
180	181	1.081376	CGGATCGATACAGGTCCGC	60.081	63.158	8.69	0.00	45.80	5.54
181	182	1.516365	CGGATCGATACAGGTCCGCT	61.516	60.000	8.69	0.00	45.80	5.52
182	183	1.531423	GGATCGATACAGGTCCGCTA	58.469	55.000	1.67	0.00	0.00	4.26
183	184	2.093106	GGATCGATACAGGTCCGCTAT	58.907	52.381	1.67	0.00	0.00	2.97
184	185	2.159366	GGATCGATACAGGTCCGCTATG	60.159	54.545	1.67	0.00	0.00	2.23
185	186	2.265589	TCGATACAGGTCCGCTATGA	57.734	50.000	0.00	0.00	0.00	2.15
186	187	2.578786	TCGATACAGGTCCGCTATGAA	58.421	47.619	0.00	0.00	0.00	2.57
187	188	2.953648	TCGATACAGGTCCGCTATGAAA	59.046	45.455	0.00	0.00	0.00	2.69
188	189	3.382227	TCGATACAGGTCCGCTATGAAAA	59.618	43.478	0.00	0.00	0.00	2.29
189	190	4.116961	CGATACAGGTCCGCTATGAAAAA	58.883	43.478	0.00	0.00	0.00	1.94
233	234	0.248907	ATCGATACAGGTCCGCGTTG	60.249	55.000	4.92	0.09	0.00	4.10
258	259	0.589708	CACGACACGTCTAGACCACA	59.410	55.000	17.23	0.00	38.32	4.17
601	608	1.486310	TGATGATCACCCACCAGTAGC	59.514	52.381	0.00	0.00	0.00	3.58
630	637	1.798813	CACGTTCTGTGGAGCCTAAAC	59.201	52.381	0.00	0.00	45.21	2.01
633	640	2.875933	CGTTCTGTGGAGCCTAAACAAA	59.124	45.455	0.00	0.00	0.00	2.83
702	715	4.521130	TGCACGACTCTCAAAAGTAGAT	57.479	40.909	0.00	0.00	0.00	1.98
755	769	9.874205	AATGTATATTTGTTTGAGGTGAAATGG	57.126	29.630	0.00	0.00	0.00	3.16
853	867	0.535780	TCACTCCCACACTCGTACGT	60.536	55.000	16.05	0.00	0.00	3.57
919	933	2.297597	CCACTGTATAGCTAGGCAGGTC	59.702	54.545	23.02	2.48	33.61	3.85
920	934	2.297597	CACTGTATAGCTAGGCAGGTCC	59.702	54.545	23.02	0.00	33.61	4.46
921	935	2.091278	ACTGTATAGCTAGGCAGGTCCA	60.091	50.000	23.02	3.12	37.29	4.02
922	936	2.560542	CTGTATAGCTAGGCAGGTCCAG	59.439	54.545	15.65	3.20	37.29	3.86
923	937	1.896465	GTATAGCTAGGCAGGTCCAGG	59.104	57.143	0.00	0.00	37.29	4.45
924	938	0.266152	ATAGCTAGGCAGGTCCAGGT	59.734	55.000	0.00	0.00	37.29	4.00
930	944	2.124942	GCAGGTCCAGGTAGCAGC	60.125	66.667	0.00	0.00	0.00	5.25
932	946	1.679311	CAGGTCCAGGTAGCAGCAA	59.321	57.895	0.00	0.00	0.00	3.91
936	950	0.321671	GTCCAGGTAGCAGCAACTGA	59.678	55.000	10.48	0.00	32.44	3.41
938	952	0.610174	CCAGGTAGCAGCAACTGAGA	59.390	55.000	10.48	0.00	32.44	3.27
939	953	1.405256	CCAGGTAGCAGCAACTGAGAG	60.405	57.143	10.48	0.00	32.44	3.20
987	1004	1.134491	GGGCCGGAAGAATATATCGGG	60.134	57.143	5.05	3.38	40.88	5.14
1080	1097	1.603739	GGCCAACACCTTCCTCACC	60.604	63.158	0.00	0.00	0.00	4.02
1083	1100	0.602905	CCAACACCTTCCTCACCGTC	60.603	60.000	0.00	0.00	0.00	4.79
1104	1121	0.460109	CCGTCTTCATCGGCATCACA	60.460	55.000	0.00	0.00	41.48	3.58
1128	1145	3.461773	ATCACGGCCTCCTCCACG	61.462	66.667	0.00	0.00	0.00	4.94
1476	1493	1.372087	CCATCCAGCTCAAGTTCGGC	61.372	60.000	0.00	0.00	0.00	5.54
1482	1499	0.107945	AGCTCAAGTTCGGCATCCTC	60.108	55.000	0.00	0.00	0.00	3.71
1596	1613	0.530744	CGCTCTACAACTACCTGCCA	59.469	55.000	0.00	0.00	0.00	4.92
1639	1656	4.284550	GCTTGCCCACCCACCTGA	62.285	66.667	0.00	0.00	0.00	3.86
1640	1657	2.282462	CTTGCCCACCCACCTGAC	60.282	66.667	0.00	0.00	0.00	3.51
1641	1658	2.776526	TTGCCCACCCACCTGACT	60.777	61.111	0.00	0.00	0.00	3.41
1642	1659	3.132029	TTGCCCACCCACCTGACTG	62.132	63.158	0.00	0.00	0.00	3.51
1643	1660	3.570212	GCCCACCCACCTGACTGT	61.570	66.667	0.00	0.00	0.00	3.55
1644	1661	3.133365	GCCCACCCACCTGACTGTT	62.133	63.158	0.00	0.00	0.00	3.16
1671	1688	5.036117	TCTCTGCCTTTGTTTACAGTCTT	57.964	39.130	0.00	0.00	0.00	3.01
1711	1729	6.530181	CAGTGCGCGGTTAATATATATTCTGA	59.470	38.462	11.28	0.00	0.00	3.27
1785	1948	8.801882	AAAGGAATGGTACGATATTCTTTTCA	57.198	30.769	14.65	0.00	37.79	2.69
1788	1951	7.499232	AGGAATGGTACGATATTCTTTTCAAGG	59.501	37.037	12.76	0.00	34.52	3.61
1791	1954	8.980481	ATGGTACGATATTCTTTTCAAGGAAT	57.020	30.769	2.80	2.80	36.36	3.01
1964	2138	1.080569	GGTGCATTGCAACGGAAGG	60.081	57.895	13.94	0.00	41.47	3.46
2001	2175	5.189928	TGCCCGTAACTCAAATAATCATGT	58.810	37.500	0.00	0.00	0.00	3.21
2007	2181	8.233868	CCGTAACTCAAATAATCATGTGTCAAA	58.766	33.333	0.00	0.00	0.00	2.69
2066	2240	2.971330	TCCCATCTTGTTGCCATTTGTT	59.029	40.909	0.00	0.00	0.00	2.83
2159	3891	2.179517	CCGTCTCTCTCGTGGCAC	59.820	66.667	7.79	7.79	0.00	5.01
2163	3895	0.389166	GTCTCTCTCGTGGCACAAGG	60.389	60.000	19.09	6.79	44.16	3.61
2225	3961	7.441890	TTTGTTTGTCCGCTATTGATTAAGA	57.558	32.000	0.00	0.00	0.00	2.10
2490	4235	4.307432	GCTTTGGGCCTTCTTCTTTTTAC	58.693	43.478	4.53	0.00	34.27	2.01
2494	4239	4.798882	TGGGCCTTCTTCTTTTTACAAGA	58.201	39.130	4.53	0.00	0.00	3.02
2554	4299	2.362077	AGCTTGTTTGAATTTCCACGCT	59.638	40.909	0.00	0.00	0.00	5.07

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	0.904865	TGAACGGTCAGCATCTCCCT	60.905	55.000	0.00	0.00	0.00	4.20
20	21	3.056628	CTGAACGGTCAGCATCTCC	57.943	57.895	19.17	0.00	44.74	3.71
143	144	0.850856	GCCGAACGATCCGAACATAC	59.149	55.000	0.00	0.00	0.00	2.39
144	145	3.261441	GCCGAACGATCCGAACATA	57.739	52.632	0.00	0.00	0.00	2.29
145	146	4.104143	GCCGAACGATCCGAACAT	57.896	55.556	0.00	0.00	0.00	2.71
153	154	3.039988	ATCGATCCGCCGAACGAT	58.960	55.556	12.94	12.94	45.51	3.73
155	156	0.997226	CTGTATCGATCCGCCGAACG	60.997	60.000	0.00	0.00	42.22	3.95
156	157	0.663568	CCTGTATCGATCCGCCGAAC	60.664	60.000	0.00	0.00	42.22	3.95
157	158	1.105167	ACCTGTATCGATCCGCCGAA	61.105	55.000	0.00	0.00	42.22	4.30
158	159	1.512996	GACCTGTATCGATCCGCCGA	61.513	60.000	0.00	0.00	43.16	5.54
159	160	1.081376	GACCTGTATCGATCCGCCG	60.081	63.158	0.00	0.00	0.00	6.46
160	161	1.289380	GGACCTGTATCGATCCGCC	59.711	63.158	0.00	0.00	0.00	6.13
161	162	1.081376	CGGACCTGTATCGATCCGC	60.081	63.158	9.71	0.00	46.75	5.54
163	164	1.531423	TAGCGGACCTGTATCGATCC	58.469	55.000	0.00	0.00	0.00	3.36
164	165	2.747989	TCATAGCGGACCTGTATCGATC	59.252	50.000	0.00	0.00	0.00	3.69
165	166	2.791655	TCATAGCGGACCTGTATCGAT	58.208	47.619	2.16	2.16	0.00	3.59
166	167	2.265589	TCATAGCGGACCTGTATCGA	57.734	50.000	0.00	0.00	0.00	3.59
167	168	3.364889	TTTCATAGCGGACCTGTATCG	57.635	47.619	0.00	0.00	0.00	2.92
187	188	4.092383	CCGAACGATCCGAACATACTTTTT	59.908	41.667	0.00	0.00	0.00	1.94
188	189	3.615496	CCGAACGATCCGAACATACTTTT	59.385	43.478	0.00	0.00	0.00	2.27
189	190	3.184541	CCGAACGATCCGAACATACTTT	58.815	45.455	0.00	0.00	0.00	2.66
190	191	2.805845	CCGAACGATCCGAACATACTT	58.194	47.619	0.00	0.00	0.00	2.24
191	192	1.535437	GCCGAACGATCCGAACATACT	60.535	52.381	0.00	0.00	0.00	2.12
192	193	0.850856	GCCGAACGATCCGAACATAC	59.149	55.000	0.00	0.00	0.00	2.39
233	234	1.736126	TCTAGACGTGTCGTGTCATCC	59.264	52.381	0.00	0.00	41.37	3.51
258	259	1.153901	CTGCATACGTTCCGACCGT	60.154	57.895	0.00	0.00	42.06	4.83
601	608	0.316442	CACAGAACGTGCAACTGCTG	60.316	55.000	0.00	8.31	39.19	4.41
633	640	8.951614	TGCCACTACACCTAGTATAATATTCT	57.048	34.615	0.00	0.00	31.46	2.40
740	754	7.386059	ACCAAATAATCCATTTCACCTCAAAC	58.614	34.615	0.00	0.00	34.49	2.93
742	756	7.234371	TCAACCAAATAATCCATTTCACCTCAA	59.766	33.333	0.00	0.00	34.49	3.02
761	775	9.739276	ACTACTCTGAATTCATTAATCAACCAA	57.261	29.630	8.96	0.00	0.00	3.67
919	933	0.610174	TCTCAGTTGCTGCTACCTGG	59.390	55.000	10.52	0.00	0.00	4.45
920	934	1.547820	TCTCTCAGTTGCTGCTACCTG	59.452	52.381	10.52	8.66	0.00	4.00
921	935	1.548269	GTCTCTCAGTTGCTGCTACCT	59.452	52.381	10.52	0.00	0.00	3.08
922	936	1.273606	TGTCTCTCAGTTGCTGCTACC	59.726	52.381	10.52	0.00	0.00	3.18
923	937	2.605030	CTGTCTCTCAGTTGCTGCTAC	58.395	52.381	6.10	6.10	39.17	3.58
924	938	1.067283	GCTGTCTCTCAGTTGCTGCTA	60.067	52.381	0.00	0.00	45.23	3.49
930	944	3.181491	GCTACCTAGCTGTCTCTCAGTTG	60.181	52.174	0.00	0.00	45.62	3.16
932	946	2.650322	GCTACCTAGCTGTCTCTCAGT	58.350	52.381	0.00	0.00	45.62	3.41
977	992	5.269991	TCTCTCCCGAATTCCCGATATATT	58.730	41.667	0.00	0.00	0.00	1.28
979	994	4.311520	TCTCTCCCGAATTCCCGATATA	57.688	45.455	0.00	0.00	0.00	0.86
1104	1121	3.083997	GAGGCCGTGATGGTCCCT	61.084	66.667	0.00	0.00	46.71	4.20
1266	1283	1.792941	GTCGCCGTAGAAGTCGTCT	59.207	57.895	0.00	0.00	40.71	4.18
1377	1394	4.969196	ATCATGGGCCGCGCGTAG	62.969	66.667	29.95	15.79	0.00	3.51
1476	1493	1.476471	GGGATGTTGCAGGAGAGGATG	60.476	57.143	0.00	0.00	0.00	3.51
1482	1499	1.817099	GAGCGGGATGTTGCAGGAG	60.817	63.158	0.00	0.00	0.00	3.69
1596	1613	4.796231	GTGAGCGGTCGCGGTCAT	62.796	66.667	17.81	0.00	45.88	3.06
1617	1634	4.659172	TGGGTGGGCAAGCGGAAG	62.659	66.667	0.00	0.00	0.00	3.46
1618	1635	4.966787	GTGGGTGGGCAAGCGGAA	62.967	66.667	0.00	0.00	0.00	4.30
1636	1653	2.562298	AGGCAGAGAAGAGAACAGTCAG	59.438	50.000	0.00	0.00	0.00	3.51
1637	1654	2.603021	AGGCAGAGAAGAGAACAGTCA	58.397	47.619	0.00	0.00	0.00	3.41
1638	1655	3.676291	AAGGCAGAGAAGAGAACAGTC	57.324	47.619	0.00	0.00	0.00	3.51
1639	1656	3.135530	ACAAAGGCAGAGAAGAGAACAGT	59.864	43.478	0.00	0.00	0.00	3.55
1640	1657	3.737850	ACAAAGGCAGAGAAGAGAACAG	58.262	45.455	0.00	0.00	0.00	3.16
1641	1658	3.845781	ACAAAGGCAGAGAAGAGAACA	57.154	42.857	0.00	0.00	0.00	3.18
1642	1659	5.527582	TGTAAACAAAGGCAGAGAAGAGAAC	59.472	40.000	0.00	0.00	0.00	3.01
1643	1660	5.680619	TGTAAACAAAGGCAGAGAAGAGAA	58.319	37.500	0.00	0.00	0.00	2.87
1644	1661	5.163301	ACTGTAAACAAAGGCAGAGAAGAGA	60.163	40.000	0.00	0.00	33.57	3.10
1780	1943	6.916360	ATGCACTCCTTAATTCCTTGAAAA	57.084	33.333	0.00	0.00	0.00	2.29
1785	1948	6.721208	TCTTCAAATGCACTCCTTAATTCCTT	59.279	34.615	0.00	0.00	0.00	3.36
1788	1951	8.866956	CATTTCTTCAAATGCACTCCTTAATTC	58.133	33.333	0.00	0.00	41.89	2.17
1928	2102	2.030274	CACCGGGTCTTTTGCTAAAAGG	60.030	50.000	6.32	8.44	46.11	3.11
1946	2120	1.080569	CCTTCCGTTGCAATGCACC	60.081	57.895	7.72	0.00	38.71	5.01
1961	2135	3.447229	CGGGCATTTGGTATCTTTTCCTT	59.553	43.478	0.00	0.00	0.00	3.36
1964	2138	5.124936	AGTTACGGGCATTTGGTATCTTTTC	59.875	40.000	0.00	0.00	0.00	2.29
2066	2240	0.735978	ATGCGAGAATGCGACGACAA	60.736	50.000	0.00	0.00	37.81	3.18
2159	3891	5.702349	AGCAAGAGAAAAATCTCACCTTG	57.298	39.130	8.42	0.00	39.12	3.61
2446	4191	4.177026	CCTGATCGGTTGTCTACTTTGAG	58.823	47.826	0.00	0.00	0.00	3.02
2490	4235	1.302832	GGTCCTGGGTGCAGTCTTG	60.303	63.158	0.00	0.00	0.00	3.02
2494	4239	1.918800	GGTAGGTCCTGGGTGCAGT	60.919	63.158	0.00	0.00	0.00	4.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.