Multiple sequence alignment - TraesCS2A01G032300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G032300 chr2A 100.000 3194 0 0 1 3194 14733932 14730739 0.000000e+00 5899.0
1 TraesCS2A01G032300 chr2A 87.301 2323 226 29 57 2354 14743641 14741363 0.000000e+00 2591.0
2 TraesCS2A01G032300 chr2A 91.258 1876 136 11 491 2361 14714853 14713001 0.000000e+00 2531.0
3 TraesCS2A01G032300 chr2A 89.043 1880 184 10 491 2354 14706283 14704410 0.000000e+00 2311.0
4 TraesCS2A01G032300 chr2A 88.812 1868 198 9 499 2360 14723882 14722020 0.000000e+00 2281.0
5 TraesCS2A01G032300 chr2A 90.122 739 73 0 932 1670 14693611 14692873 0.000000e+00 961.0
6 TraesCS2A01G032300 chr2A 91.489 329 28 0 491 819 14725326 14724998 1.350000e-123 453.0
7 TraesCS2A01G032300 chr2A 91.638 287 21 3 495 781 14693880 14693597 8.300000e-106 394.0
8 TraesCS2A01G032300 chr2A 94.253 174 8 2 64 236 14724293 14724121 6.790000e-67 265.0
9 TraesCS2A01G032300 chr2A 91.803 183 9 2 2479 2661 14712920 14712744 1.900000e-62 250.0
10 TraesCS2A01G032300 chr2A 77.309 379 53 20 2474 2834 14704372 14704009 3.250000e-45 193.0
11 TraesCS2A01G032300 chr2A 85.561 187 24 2 2466 2652 14722001 14721818 3.250000e-45 193.0
12 TraesCS2A01G032300 chr2A 81.915 188 28 6 2502 2685 14692533 14692348 1.530000e-33 154.0
13 TraesCS2A01G032300 chr2A 90.164 61 6 0 2827 2887 733925375 733925315 2.640000e-11 80.5
14 TraesCS2A01G032300 chr2A 92.308 39 3 0 2833 2871 699975303 699975341 4.450000e-04 56.5
15 TraesCS2A01G032300 chr2B 87.949 2672 263 32 2 2656 20142810 20145439 0.000000e+00 3096.0
16 TraesCS2A01G032300 chr2B 91.789 341 20 6 2678 3015 20145771 20146106 4.820000e-128 468.0
17 TraesCS2A01G032300 chr2B 91.892 74 6 0 2394 2467 214828968 214829041 1.570000e-18 104.0
18 TraesCS2A01G032300 chr2D 86.370 2311 234 30 57 2348 12635604 12633356 0.000000e+00 2447.0
19 TraesCS2A01G032300 chr2D 87.877 1889 208 13 491 2361 12629534 12627649 0.000000e+00 2200.0
20 TraesCS2A01G032300 chr2D 85.253 217 25 5 2474 2685 12627619 12627405 1.930000e-52 217.0
21 TraesCS2A01G032300 chr2D 85.475 179 23 2 2474 2652 12633316 12633141 1.960000e-42 183.0
22 TraesCS2A01G032300 chr2D 85.417 96 6 5 2373 2467 294473946 294474034 3.390000e-15 93.5
23 TraesCS2A01G032300 chrUn 77.916 1286 250 19 1001 2281 63289903 63288647 0.000000e+00 771.0
24 TraesCS2A01G032300 chrUn 77.916 1286 250 19 1001 2281 299953071 299951815 0.000000e+00 771.0
25 TraesCS2A01G032300 chr5D 75.710 1198 262 19 1001 2185 438607402 438606221 9.940000e-160 573.0
26 TraesCS2A01G032300 chr5D 86.813 91 6 4 2379 2468 60145871 60145786 2.620000e-16 97.1
27 TraesCS2A01G032300 chr5B 74.580 1251 253 36 1062 2286 531814448 531815659 3.700000e-134 488.0
28 TraesCS2A01G032300 chr3B 90.278 72 5 2 2401 2470 178267963 178267892 3.390000e-15 93.5
29 TraesCS2A01G032300 chr7D 85.393 89 9 1 2379 2467 25389229 25389313 4.390000e-14 89.8
30 TraesCS2A01G032300 chr7D 86.585 82 7 3 2375 2456 610697379 610697302 1.580000e-13 87.9
31 TraesCS2A01G032300 chr3D 88.000 75 7 2 2394 2467 360933624 360933697 1.580000e-13 87.9
32 TraesCS2A01G032300 chr3A 87.179 78 6 3 2379 2456 538848786 538848713 5.680000e-13 86.1
33 TraesCS2A01G032300 chr6B 97.727 44 0 1 13 55 706132698 706132655 1.230000e-09 75.0
34 TraesCS2A01G032300 chr6B 97.619 42 1 0 11 52 162174594 162174635 4.420000e-09 73.1
35 TraesCS2A01G032300 chr6D 97.619 42 1 0 11 52 85798352 85798393 4.420000e-09 73.1
36 TraesCS2A01G032300 chr6D 92.683 41 3 0 2830 2870 61722309 61722269 3.440000e-05 60.2
37 TraesCS2A01G032300 chr6A 97.619 42 1 0 11 52 103000995 103001036 4.420000e-09 73.1
38 TraesCS2A01G032300 chr1B 95.455 44 2 0 9 52 375805867 375805910 1.590000e-08 71.3
39 TraesCS2A01G032300 chr1B 100.000 37 0 0 15 51 633036931 633036895 5.720000e-08 69.4
40 TraesCS2A01G032300 chr1D 100.000 37 0 0 16 52 375958875 375958839 5.720000e-08 69.4
41 TraesCS2A01G032300 chr1D 93.478 46 2 1 8 52 454856612 454856567 2.060000e-07 67.6
42 TraesCS2A01G032300 chr4A 92.857 42 3 0 2831 2872 603947575 603947616 9.570000e-06 62.1
43 TraesCS2A01G032300 chr7A 92.500 40 3 0 2832 2871 680681677 680681716 1.240000e-04 58.4
44 TraesCS2A01G032300 chr7A 96.970 33 1 0 2839 2871 93921791 93921759 4.450000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G032300 chr2A 14730739 14733932 3193 True 5899.00 5899 100.000000 1 3194 1 chr2A.!!$R1 3193
1 TraesCS2A01G032300 chr2A 14741363 14743641 2278 True 2591.00 2591 87.301000 57 2354 1 chr2A.!!$R2 2297
2 TraesCS2A01G032300 chr2A 14712744 14714853 2109 True 1390.50 2531 91.530500 491 2661 2 chr2A.!!$R6 2170
3 TraesCS2A01G032300 chr2A 14704009 14706283 2274 True 1252.00 2311 83.176000 491 2834 2 chr2A.!!$R5 2343
4 TraesCS2A01G032300 chr2A 14721818 14725326 3508 True 798.00 2281 90.028750 64 2652 4 chr2A.!!$R7 2588
5 TraesCS2A01G032300 chr2A 14692348 14693880 1532 True 503.00 961 87.891667 495 2685 3 chr2A.!!$R4 2190
6 TraesCS2A01G032300 chr2B 20142810 20146106 3296 False 1782.00 3096 89.869000 2 3015 2 chr2B.!!$F2 3013
7 TraesCS2A01G032300 chr2D 12627405 12635604 8199 True 1261.75 2447 86.243750 57 2685 4 chr2D.!!$R1 2628
8 TraesCS2A01G032300 chrUn 63288647 63289903 1256 True 771.00 771 77.916000 1001 2281 1 chrUn.!!$R1 1280
9 TraesCS2A01G032300 chrUn 299951815 299953071 1256 True 771.00 771 77.916000 1001 2281 1 chrUn.!!$R2 1280
10 TraesCS2A01G032300 chr5D 438606221 438607402 1181 True 573.00 573 75.710000 1001 2185 1 chr5D.!!$R2 1184
11 TraesCS2A01G032300 chr5B 531814448 531815659 1211 False 488.00 488 74.580000 1062 2286 1 chr5B.!!$F1 1224

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 1931 0.740737 GGACGAAAATGCCTGGATGG 59.259 55.0 0.0 0.0 39.35 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 3400 0.738975 TCGGAGATAGAGCGTGTTGG 59.261 55.0 0.0 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.077386 TCCAAAATAAATGTCGTGGTTTTAGTC 58.923 33.333 0.00 0.00 0.00 2.59
62 63 3.542648 GTGGTTTTAGTCCATAGGGAGC 58.457 50.000 0.00 0.00 46.12 4.70
109 1080 2.297701 GAACCAGAACAAGCCAAGTCA 58.702 47.619 0.00 0.00 0.00 3.41
120 1091 3.064900 AGCCAAGTCATCTCCTTTGAC 57.935 47.619 0.00 0.00 43.05 3.18
121 1092 1.734465 GCCAAGTCATCTCCTTTGACG 59.266 52.381 0.00 0.00 46.39 4.35
122 1093 2.612972 GCCAAGTCATCTCCTTTGACGA 60.613 50.000 0.00 0.00 46.39 4.20
250 1267 5.608676 GGCAACTAGTTCAGTAACTTTCC 57.391 43.478 4.77 0.00 43.60 3.13
277 1295 7.281040 TGTTAATTCTAATATCGACGGTCCT 57.719 36.000 1.91 0.00 0.00 3.85
283 1301 2.225068 ATATCGACGGTCCTGCAAAG 57.775 50.000 1.91 0.00 0.00 2.77
390 1416 9.012161 GTCAAGAGACTAAGTAAGGTTCTAGAA 57.988 37.037 0.00 0.00 41.64 2.10
391 1417 9.012161 TCAAGAGACTAAGTAAGGTTCTAGAAC 57.988 37.037 24.73 24.73 40.45 3.01
405 1431 5.295152 GTTCTAGAACAGGAACCGAGAAAA 58.705 41.667 27.12 0.00 40.84 2.29
414 1440 5.770162 ACAGGAACCGAGAAAATCAAGAATT 59.230 36.000 0.00 0.00 0.00 2.17
440 1466 3.358775 TGATTTTAATTGCCGAATCGCG 58.641 40.909 0.00 0.00 40.47 5.87
489 1527 5.354234 ACCGGATGAAAAGTATGTTGCTAAG 59.646 40.000 9.46 0.00 0.00 2.18
626 1665 6.313164 GCAACAACTAGAATTACTACAGGGAC 59.687 42.308 0.00 0.00 0.00 4.46
856 1931 0.740737 GGACGAAAATGCCTGGATGG 59.259 55.000 0.00 0.00 39.35 3.51
881 1956 2.476619 CTGTGCTTCGTCTTCGTCAAAT 59.523 45.455 0.00 0.00 38.33 2.32
1380 2460 3.489513 AACCTATCCGCTGCCCCC 61.490 66.667 0.00 0.00 0.00 5.40
1416 2496 1.657181 GGCGGTGCTTTTGAACACG 60.657 57.895 0.00 0.00 37.68 4.49
1443 2523 2.671396 CCTTGTTATCCGGTCGTCAAAG 59.329 50.000 0.00 0.00 0.00 2.77
1489 2569 1.519676 CACCACACCGACACGTTCA 60.520 57.895 0.00 0.00 0.00 3.18
1531 2611 4.631813 GGGTCAAGTACAACACTCATGATC 59.368 45.833 0.00 0.00 36.04 2.92
1555 2635 3.214250 GAGCGCCTCGTATCCTGGG 62.214 68.421 2.29 0.00 0.00 4.45
1725 2813 3.177249 GCGAACGCCAGTACGGAC 61.177 66.667 8.03 0.00 36.56 4.79
1751 2839 0.469917 ATCTACTGGGCCATCGTTGG 59.530 55.000 6.72 8.23 46.66 3.77
1895 2983 1.841556 TCCTCGTGAAGTGGCCCTT 60.842 57.895 0.00 2.67 35.59 3.95
1909 2997 1.135315 CCCTTCGTTCAATGCAGCG 59.865 57.895 0.00 0.00 0.00 5.18
1990 3078 2.224744 TGCAAGTGCCTAGATGGTTTCA 60.225 45.455 0.00 0.00 41.18 2.69
2004 3092 1.072332 TTTCAAGCCGGCTAGCACA 59.928 52.632 33.07 10.51 34.23 4.57
2089 3189 1.963515 GTGATGGTTTCTTGGCCTTGT 59.036 47.619 3.32 0.00 0.00 3.16
2193 3293 0.105964 ACTGCTCTTGTGTGGCGTAA 59.894 50.000 0.00 0.00 0.00 3.18
2274 3374 0.762418 ACGGGGAGTTGATTGACACA 59.238 50.000 0.00 0.00 0.00 3.72
2300 3400 1.607148 GCTTGGTGAGGTGTTTGGTAC 59.393 52.381 0.00 0.00 0.00 3.34
2326 3426 1.334599 CGCTCTATCTCCGAGTTGCTC 60.335 57.143 0.00 0.00 0.00 4.26
2362 3464 4.402474 CAGATGGTACCCATTTTTCCCTTC 59.598 45.833 10.07 0.00 45.26 3.46
2364 3466 4.412060 TGGTACCCATTTTTCCCTTCAT 57.588 40.909 10.07 0.00 0.00 2.57
2366 3468 5.158889 TGGTACCCATTTTTCCCTTCATTT 58.841 37.500 10.07 0.00 0.00 2.32
2367 3469 5.608860 TGGTACCCATTTTTCCCTTCATTTT 59.391 36.000 10.07 0.00 0.00 1.82
2368 3470 6.101881 TGGTACCCATTTTTCCCTTCATTTTT 59.898 34.615 10.07 0.00 0.00 1.94
2431 3542 8.414003 AGAGCGTTTAGATCATTAATGTAGTGA 58.586 33.333 14.97 0.00 37.82 3.41
2441 3552 9.197694 GATCATTAATGTAGTGATCTAAACGCT 57.802 33.333 14.97 0.00 44.08 5.07
2452 3563 8.508800 AGTGATCTAAACGCTCTTATATTTCG 57.491 34.615 0.00 0.00 0.00 3.46
2458 3569 9.443283 TCTAAACGCTCTTATATTTCGTTAGAC 57.557 33.333 0.00 0.00 41.67 2.59
2580 3692 1.656587 TACAGTGAGGATTGGGCTGT 58.343 50.000 0.00 0.00 42.25 4.40
2602 3714 3.315191 TCAGTTTTAGCAAGTGTTCTGGC 59.685 43.478 0.00 0.00 40.72 4.85
2722 4167 8.596293 ACCATGTAAAATCATGAAATCCTTTGT 58.404 29.630 0.00 0.00 45.41 2.83
2735 4180 8.659925 TGAAATCCTTTGTACACGTAAAACTA 57.340 30.769 0.00 0.00 0.00 2.24
2737 4182 8.891671 AAATCCTTTGTACACGTAAAACTAGA 57.108 30.769 0.00 0.00 0.00 2.43
2752 4197 9.214953 CGTAAAACTAGAGCAAATCATGAAATC 57.785 33.333 0.00 0.00 0.00 2.17
2757 4202 7.769220 ACTAGAGCAAATCATGAAATCTTTGG 58.231 34.615 17.09 6.46 30.55 3.28
2837 4294 6.605471 TCACAATGGACAATGTACTACTCT 57.395 37.500 0.00 0.00 0.00 3.24
2845 4302 6.482641 TGGACAATGTACTACTCTCTACGATC 59.517 42.308 0.00 0.00 0.00 3.69
2857 4314 7.171630 ACTCTCTACGATCCAAAATAAGTGT 57.828 36.000 0.00 0.00 0.00 3.55
2861 4318 4.921470 ACGATCCAAAATAAGTGTCGTG 57.079 40.909 0.00 0.00 39.10 4.35
2900 4357 6.531021 CGGAGGGAGTACCAAATAATATTGT 58.469 40.000 0.00 0.00 43.89 2.71
2915 4372 2.425143 ATTGTAGTCCACATGCCAGG 57.575 50.000 0.00 0.00 36.90 4.45
2925 4382 3.140707 TCCACATGCCAGGGAAATCATAT 59.859 43.478 0.00 0.00 0.00 1.78
2926 4383 3.257375 CCACATGCCAGGGAAATCATATG 59.743 47.826 0.00 0.00 0.00 1.78
2933 4390 4.641989 GCCAGGGAAATCATATGCGATATT 59.358 41.667 0.00 0.00 0.00 1.28
2935 4392 5.649395 CCAGGGAAATCATATGCGATATTGT 59.351 40.000 0.00 0.00 0.00 2.71
2956 4414 4.576873 TGTCGGTTTCATAAAACAAGAGCA 59.423 37.500 0.00 0.00 45.44 4.26
2961 4419 5.695816 GGTTTCATAAAACAAGAGCAATGCA 59.304 36.000 8.35 0.00 45.44 3.96
2976 4434 3.731867 GCAATGCAGTGTTACCATGCTAC 60.732 47.826 16.47 0.00 40.62 3.58
3003 4462 0.969894 GGTCTCGAGGATATGGGTGG 59.030 60.000 13.56 0.00 0.00 4.61
3015 4474 0.920763 ATGGGTGGGCCTGATTGAGA 60.921 55.000 4.53 0.00 34.45 3.27
3016 4475 1.225704 GGGTGGGCCTGATTGAGAG 59.774 63.158 4.53 0.00 34.45 3.20
3017 4476 1.225704 GGTGGGCCTGATTGAGAGG 59.774 63.158 4.53 0.00 0.00 3.69
3025 4484 2.089980 CCTGATTGAGAGGCAGTTTGG 58.910 52.381 0.00 0.00 0.00 3.28
3026 4485 2.553904 CCTGATTGAGAGGCAGTTTGGT 60.554 50.000 0.00 0.00 0.00 3.67
3027 4486 3.152341 CTGATTGAGAGGCAGTTTGGTT 58.848 45.455 0.00 0.00 0.00 3.67
3028 4487 3.149196 TGATTGAGAGGCAGTTTGGTTC 58.851 45.455 0.00 0.00 0.00 3.62
3029 4488 1.593196 TTGAGAGGCAGTTTGGTTCG 58.407 50.000 0.00 0.00 0.00 3.95
3030 4489 0.468226 TGAGAGGCAGTTTGGTTCGT 59.532 50.000 0.00 0.00 0.00 3.85
3031 4490 0.868406 GAGAGGCAGTTTGGTTCGTG 59.132 55.000 0.00 0.00 0.00 4.35
3032 4491 0.180406 AGAGGCAGTTTGGTTCGTGT 59.820 50.000 0.00 0.00 0.00 4.49
3033 4492 0.586802 GAGGCAGTTTGGTTCGTGTC 59.413 55.000 0.00 0.00 0.00 3.67
3034 4493 0.818040 AGGCAGTTTGGTTCGTGTCC 60.818 55.000 0.00 0.00 0.00 4.02
3035 4494 1.098712 GGCAGTTTGGTTCGTGTCCA 61.099 55.000 0.00 0.00 0.00 4.02
3036 4495 0.028902 GCAGTTTGGTTCGTGTCCAC 59.971 55.000 0.00 0.00 34.45 4.02
3037 4496 1.374560 CAGTTTGGTTCGTGTCCACA 58.625 50.000 0.00 0.00 34.45 4.17
3038 4497 1.330521 CAGTTTGGTTCGTGTCCACAG 59.669 52.381 0.00 0.00 34.45 3.66
3039 4498 1.065709 AGTTTGGTTCGTGTCCACAGT 60.066 47.619 0.00 0.00 34.45 3.55
3040 4499 1.741145 GTTTGGTTCGTGTCCACAGTT 59.259 47.619 0.00 0.00 34.45 3.16
3041 4500 1.374560 TTGGTTCGTGTCCACAGTTG 58.625 50.000 0.00 0.00 34.45 3.16
3042 4501 1.092921 TGGTTCGTGTCCACAGTTGC 61.093 55.000 0.00 0.00 0.00 4.17
3043 4502 1.275657 GTTCGTGTCCACAGTTGCG 59.724 57.895 0.00 0.00 0.00 4.85
3044 4503 1.153529 TTCGTGTCCACAGTTGCGT 60.154 52.632 0.00 0.00 0.00 5.24
3045 4504 1.425267 TTCGTGTCCACAGTTGCGTG 61.425 55.000 0.00 0.00 36.61 5.34
3046 4505 2.327940 GTGTCCACAGTTGCGTGC 59.672 61.111 0.00 0.00 35.47 5.34
3047 4506 2.899838 TGTCCACAGTTGCGTGCC 60.900 61.111 0.00 0.00 35.47 5.01
3048 4507 2.591715 GTCCACAGTTGCGTGCCT 60.592 61.111 0.00 0.00 35.47 4.75
3049 4508 2.591429 TCCACAGTTGCGTGCCTG 60.591 61.111 0.00 0.00 35.47 4.85
3050 4509 3.663176 CCACAGTTGCGTGCCTGG 61.663 66.667 3.71 0.00 35.47 4.45
3051 4510 2.901840 CACAGTTGCGTGCCTGGT 60.902 61.111 0.00 0.00 32.90 4.00
3052 4511 1.596752 CACAGTTGCGTGCCTGGTA 60.597 57.895 0.00 0.00 32.90 3.25
3053 4512 1.147376 ACAGTTGCGTGCCTGGTAA 59.853 52.632 0.00 0.00 32.90 2.85
3054 4513 0.250727 ACAGTTGCGTGCCTGGTAAT 60.251 50.000 0.00 0.00 32.90 1.89
3055 4514 0.447801 CAGTTGCGTGCCTGGTAATC 59.552 55.000 0.00 0.00 0.00 1.75
3056 4515 0.324943 AGTTGCGTGCCTGGTAATCT 59.675 50.000 0.00 0.00 0.00 2.40
3057 4516 1.165270 GTTGCGTGCCTGGTAATCTT 58.835 50.000 0.00 0.00 0.00 2.40
3058 4517 1.539827 GTTGCGTGCCTGGTAATCTTT 59.460 47.619 0.00 0.00 0.00 2.52
3059 4518 1.904287 TGCGTGCCTGGTAATCTTTT 58.096 45.000 0.00 0.00 0.00 2.27
3060 4519 1.539388 TGCGTGCCTGGTAATCTTTTG 59.461 47.619 0.00 0.00 0.00 2.44
3061 4520 1.539827 GCGTGCCTGGTAATCTTTTGT 59.460 47.619 0.00 0.00 0.00 2.83
3062 4521 2.414161 GCGTGCCTGGTAATCTTTTGTC 60.414 50.000 0.00 0.00 0.00 3.18
3063 4522 2.811431 CGTGCCTGGTAATCTTTTGTCA 59.189 45.455 0.00 0.00 0.00 3.58
3064 4523 3.120199 CGTGCCTGGTAATCTTTTGTCAG 60.120 47.826 0.00 0.00 0.00 3.51
3065 4524 3.191371 GTGCCTGGTAATCTTTTGTCAGG 59.809 47.826 0.00 0.00 43.20 3.86
3066 4525 3.073798 TGCCTGGTAATCTTTTGTCAGGA 59.926 43.478 10.90 0.00 43.05 3.86
3067 4526 3.440522 GCCTGGTAATCTTTTGTCAGGAC 59.559 47.826 10.90 0.00 43.05 3.85
3068 4527 4.807643 GCCTGGTAATCTTTTGTCAGGACT 60.808 45.833 10.90 0.00 43.05 3.85
3069 4528 4.938226 CCTGGTAATCTTTTGTCAGGACTC 59.062 45.833 0.00 0.00 43.05 3.36
3070 4529 4.906618 TGGTAATCTTTTGTCAGGACTCC 58.093 43.478 0.65 0.00 0.00 3.85
3071 4530 4.349636 TGGTAATCTTTTGTCAGGACTCCA 59.650 41.667 0.00 0.00 0.00 3.86
3072 4531 5.163141 TGGTAATCTTTTGTCAGGACTCCAA 60.163 40.000 0.00 0.00 0.00 3.53
3073 4532 5.181433 GGTAATCTTTTGTCAGGACTCCAAC 59.819 44.000 0.00 0.00 0.00 3.77
3074 4533 3.208747 TCTTTTGTCAGGACTCCAACC 57.791 47.619 0.00 0.00 0.00 3.77
3075 4534 2.507886 TCTTTTGTCAGGACTCCAACCA 59.492 45.455 0.00 0.00 0.00 3.67
3076 4535 3.053991 TCTTTTGTCAGGACTCCAACCAA 60.054 43.478 0.00 0.00 0.00 3.67
3077 4536 3.374042 TTTGTCAGGACTCCAACCAAA 57.626 42.857 0.00 0.53 0.00 3.28
3078 4537 2.341846 TGTCAGGACTCCAACCAAAC 57.658 50.000 0.00 0.00 0.00 2.93
3079 4538 1.843851 TGTCAGGACTCCAACCAAACT 59.156 47.619 0.00 0.00 0.00 2.66
3080 4539 2.222027 GTCAGGACTCCAACCAAACTG 58.778 52.381 0.00 0.00 0.00 3.16
3081 4540 0.954452 CAGGACTCCAACCAAACTGC 59.046 55.000 0.00 0.00 0.00 4.40
3082 4541 0.178990 AGGACTCCAACCAAACTGCC 60.179 55.000 0.00 0.00 0.00 4.85
3083 4542 1.179174 GGACTCCAACCAAACTGCCC 61.179 60.000 0.00 0.00 0.00 5.36
3084 4543 1.152546 ACTCCAACCAAACTGCCCC 60.153 57.895 0.00 0.00 0.00 5.80
3085 4544 1.153756 CTCCAACCAAACTGCCCCT 59.846 57.895 0.00 0.00 0.00 4.79
3086 4545 1.152567 TCCAACCAAACTGCCCCTG 60.153 57.895 0.00 0.00 0.00 4.45
3087 4546 1.152567 CCAACCAAACTGCCCCTGA 60.153 57.895 0.00 0.00 0.00 3.86
3088 4547 1.181098 CCAACCAAACTGCCCCTGAG 61.181 60.000 0.00 0.00 0.00 3.35
3095 4554 2.113774 CTGCCCCTGAGTGCACAA 59.886 61.111 21.04 5.79 33.17 3.33
3112 4571 1.063792 ACAATGCACATGCTATGGGGA 60.064 47.619 5.31 0.00 38.77 4.81
3114 4573 1.919240 ATGCACATGCTATGGGGATG 58.081 50.000 5.31 0.00 43.51 3.51
3117 4576 1.885359 GCACATGCTATGGGGATGAGG 60.885 57.143 8.49 3.08 44.95 3.86
3118 4577 1.701292 CACATGCTATGGGGATGAGGA 59.299 52.381 8.49 0.00 44.95 3.71
3119 4578 1.983691 ACATGCTATGGGGATGAGGAG 59.016 52.381 8.49 0.00 44.95 3.69
3121 4580 0.268869 TGCTATGGGGATGAGGAGGT 59.731 55.000 0.00 0.00 0.00 3.85
3122 4581 1.507742 TGCTATGGGGATGAGGAGGTA 59.492 52.381 0.00 0.00 0.00 3.08
3123 4582 2.183679 GCTATGGGGATGAGGAGGTAG 58.816 57.143 0.00 0.00 0.00 3.18
3124 4583 2.183679 CTATGGGGATGAGGAGGTAGC 58.816 57.143 0.00 0.00 0.00 3.58
3125 4584 0.268869 ATGGGGATGAGGAGGTAGCA 59.731 55.000 0.00 0.00 0.00 3.49
3126 4585 0.399091 TGGGGATGAGGAGGTAGCAG 60.399 60.000 0.00 0.00 0.00 4.24
3127 4586 0.399233 GGGGATGAGGAGGTAGCAGT 60.399 60.000 0.00 0.00 0.00 4.40
3129 4588 1.689575 GGGATGAGGAGGTAGCAGTGA 60.690 57.143 0.00 0.00 0.00 3.41
3131 4590 2.660572 GATGAGGAGGTAGCAGTGAGA 58.339 52.381 0.00 0.00 0.00 3.27
3132 4591 2.136298 TGAGGAGGTAGCAGTGAGAG 57.864 55.000 0.00 0.00 0.00 3.20
3133 4592 1.341482 TGAGGAGGTAGCAGTGAGAGG 60.341 57.143 0.00 0.00 0.00 3.69
3134 4593 0.032615 AGGAGGTAGCAGTGAGAGGG 60.033 60.000 0.00 0.00 0.00 4.30
3135 4594 1.045911 GGAGGTAGCAGTGAGAGGGG 61.046 65.000 0.00 0.00 0.00 4.79
3136 4595 1.002274 AGGTAGCAGTGAGAGGGGG 59.998 63.158 0.00 0.00 0.00 5.40
3137 4596 1.001760 GGTAGCAGTGAGAGGGGGA 59.998 63.158 0.00 0.00 0.00 4.81
3140 4599 1.050988 TAGCAGTGAGAGGGGGATGC 61.051 60.000 0.00 0.00 0.00 3.91
3141 4600 2.673200 GCAGTGAGAGGGGGATGCA 61.673 63.158 0.00 0.00 33.92 3.96
3143 4602 0.329261 CAGTGAGAGGGGGATGCAAA 59.671 55.000 0.00 0.00 0.00 3.68
3144 4603 0.622665 AGTGAGAGGGGGATGCAAAG 59.377 55.000 0.00 0.00 0.00 2.77
3145 4604 0.620556 GTGAGAGGGGGATGCAAAGA 59.379 55.000 0.00 0.00 0.00 2.52
3147 4606 0.620556 GAGAGGGGGATGCAAAGACA 59.379 55.000 0.00 0.00 0.00 3.41
3150 4609 1.821136 GAGGGGGATGCAAAGACAAAG 59.179 52.381 0.00 0.00 0.00 2.77
3152 4611 2.158325 AGGGGGATGCAAAGACAAAGAA 60.158 45.455 0.00 0.00 0.00 2.52
3153 4612 2.632512 GGGGGATGCAAAGACAAAGAAA 59.367 45.455 0.00 0.00 0.00 2.52
3154 4613 3.554960 GGGGGATGCAAAGACAAAGAAAC 60.555 47.826 0.00 0.00 0.00 2.78
3155 4614 3.069443 GGGGATGCAAAGACAAAGAAACA 59.931 43.478 0.00 0.00 0.00 2.83
3156 4615 4.262592 GGGGATGCAAAGACAAAGAAACAT 60.263 41.667 0.00 0.00 0.00 2.71
3157 4616 5.299949 GGGATGCAAAGACAAAGAAACATT 58.700 37.500 0.00 0.00 0.00 2.71
3158 4617 6.454795 GGGATGCAAAGACAAAGAAACATTA 58.545 36.000 0.00 0.00 0.00 1.90
3159 4618 7.099120 GGGATGCAAAGACAAAGAAACATTAT 58.901 34.615 0.00 0.00 0.00 1.28
3160 4619 7.603784 GGGATGCAAAGACAAAGAAACATTATT 59.396 33.333 0.00 0.00 0.00 1.40
3161 4620 8.992073 GGATGCAAAGACAAAGAAACATTATTT 58.008 29.630 0.00 0.00 0.00 1.40
3163 4622 8.364129 TGCAAAGACAAAGAAACATTATTTCC 57.636 30.769 0.00 0.00 0.00 3.13
3164 4623 7.440856 TGCAAAGACAAAGAAACATTATTTCCC 59.559 33.333 0.00 0.00 0.00 3.97
3165 4624 7.440856 GCAAAGACAAAGAAACATTATTTCCCA 59.559 33.333 0.00 0.00 0.00 4.37
3166 4625 9.323985 CAAAGACAAAGAAACATTATTTCCCAA 57.676 29.630 0.00 0.00 0.00 4.12
3167 4626 8.887036 AAGACAAAGAAACATTATTTCCCAAC 57.113 30.769 0.00 0.00 0.00 3.77
3168 4627 8.017418 AGACAAAGAAACATTATTTCCCAACA 57.983 30.769 0.00 0.00 0.00 3.33
3169 4628 7.926018 AGACAAAGAAACATTATTTCCCAACAC 59.074 33.333 0.00 0.00 0.00 3.32
3170 4629 7.560368 ACAAAGAAACATTATTTCCCAACACA 58.440 30.769 0.00 0.00 0.00 3.72
3171 4630 8.210265 ACAAAGAAACATTATTTCCCAACACAT 58.790 29.630 0.00 0.00 0.00 3.21
3172 4631 8.497554 CAAAGAAACATTATTTCCCAACACATG 58.502 33.333 0.00 0.00 0.00 3.21
3173 4632 7.537596 AGAAACATTATTTCCCAACACATGA 57.462 32.000 0.00 0.00 0.00 3.07
3174 4633 7.961351 AGAAACATTATTTCCCAACACATGAA 58.039 30.769 0.00 0.00 0.00 2.57
3175 4634 8.596293 AGAAACATTATTTCCCAACACATGAAT 58.404 29.630 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 3.896888 TGGCAAAATAATGCTCCCTATGG 59.103 43.478 0.00 0.00 45.68 2.74
62 63 6.183360 GCAGGAGAAAATGTGGCAAAATAATG 60.183 38.462 0.00 0.00 0.00 1.90
109 1080 2.234661 TGCATGACTCGTCAAAGGAGAT 59.765 45.455 3.60 0.00 43.58 2.75
122 1093 1.293498 GTGACCGGAGTGCATGACT 59.707 57.895 9.46 0.00 37.76 3.41
250 1267 8.433126 GGACCGTCGATATTAGAATTAACAATG 58.567 37.037 0.00 0.00 0.00 2.82
340 1366 5.086104 TCAACTTCTTCACCACCTATAGC 57.914 43.478 0.00 0.00 0.00 2.97
341 1367 6.644347 ACATCAACTTCTTCACCACCTATAG 58.356 40.000 0.00 0.00 0.00 1.31
390 1416 4.351874 TCTTGATTTTCTCGGTTCCTGT 57.648 40.909 0.00 0.00 0.00 4.00
391 1417 5.886960 ATTCTTGATTTTCTCGGTTCCTG 57.113 39.130 0.00 0.00 0.00 3.86
414 1440 6.019961 GCGATTCGGCAATTAAAATCATTTCA 60.020 34.615 8.34 0.00 0.00 2.69
420 1446 3.998441 CGCGATTCGGCAATTAAAATC 57.002 42.857 0.00 0.00 33.78 2.17
489 1527 1.003223 GCCACGTCACAACTTACCAAC 60.003 52.381 0.00 0.00 0.00 3.77
856 1931 1.862806 GAAGACGAAGCACAGGCAC 59.137 57.895 0.00 0.00 44.61 5.01
1260 2340 3.932089 GTGAAGAGGAAGAGCTGTTGATC 59.068 47.826 0.00 0.00 0.00 2.92
1416 2496 0.323087 ACCGGATAACAAGGTTGCCC 60.323 55.000 9.46 0.00 33.96 5.36
1489 2569 1.535685 GGAGCTTCATGCCAGGGAT 59.464 57.895 0.00 0.00 44.23 3.85
1577 2657 2.047274 CGAAAGAGAAGCGGCCCA 60.047 61.111 0.00 0.00 0.00 5.36
1689 2774 3.583276 CTGTTGGTACCGGCGCTCA 62.583 63.158 7.64 0.00 0.00 4.26
1719 2807 2.876550 CCAGTAGATGATGACGTCCGTA 59.123 50.000 14.12 0.00 32.93 4.02
1722 2810 1.269831 GCCCAGTAGATGATGACGTCC 60.270 57.143 14.12 0.00 32.93 4.79
1725 2813 0.752658 TGGCCCAGTAGATGATGACG 59.247 55.000 0.00 0.00 0.00 4.35
1751 2839 1.537135 GGTAGATCTCCTTGTCGCTGC 60.537 57.143 0.00 0.00 0.00 5.25
1895 2983 0.787787 GTACACGCTGCATTGAACGA 59.212 50.000 0.00 0.00 0.00 3.85
1909 2997 1.149964 GGACCGCAATAGCCGTACAC 61.150 60.000 0.00 0.00 33.63 2.90
1990 3078 2.581354 CTCTGTGCTAGCCGGCTT 59.419 61.111 37.74 19.11 0.00 4.35
2004 3092 2.283966 CCACCGGTCCACTCCTCT 60.284 66.667 2.59 0.00 0.00 3.69
2169 3269 1.865865 CCACACAAGAGCAGTTACGT 58.134 50.000 0.00 0.00 0.00 3.57
2208 3308 3.535629 TTCAGACCCGCCACTGCTG 62.536 63.158 0.00 0.00 34.57 4.41
2274 3374 0.846693 ACACCTCACCAAGCTTTCCT 59.153 50.000 0.00 0.00 0.00 3.36
2300 3400 0.738975 TCGGAGATAGAGCGTGTTGG 59.261 55.000 0.00 0.00 0.00 3.77
2435 3546 7.222224 CCTGTCTAACGAAATATAAGAGCGTTT 59.778 37.037 0.00 0.00 41.74 3.60
2436 3547 6.696148 CCTGTCTAACGAAATATAAGAGCGTT 59.304 38.462 0.00 0.00 45.62 4.84
2437 3548 6.207213 CCTGTCTAACGAAATATAAGAGCGT 58.793 40.000 0.00 0.00 36.68 5.07
2438 3549 5.629849 CCCTGTCTAACGAAATATAAGAGCG 59.370 44.000 0.00 0.00 0.00 5.03
2439 3550 6.746120 TCCCTGTCTAACGAAATATAAGAGC 58.254 40.000 0.00 0.00 0.00 4.09
2440 3551 7.942990 ACTCCCTGTCTAACGAAATATAAGAG 58.057 38.462 0.00 0.00 0.00 2.85
2441 3552 7.893124 ACTCCCTGTCTAACGAAATATAAGA 57.107 36.000 0.00 0.00 0.00 2.10
2452 3563 8.751242 AGTAAAAGAAGATACTCCCTGTCTAAC 58.249 37.037 0.00 0.00 0.00 2.34
2458 3569 9.372369 CAAACTAGTAAAAGAAGATACTCCCTG 57.628 37.037 0.00 0.00 34.37 4.45
2580 3692 3.315191 GCCAGAACACTTGCTAAAACTGA 59.685 43.478 0.00 0.00 0.00 3.41
2602 3714 2.775890 CCAAGGCTATGCATAGGAGTG 58.224 52.381 30.14 10.25 0.00 3.51
2656 3775 6.015180 TGCAATATCATTTTTATGAGAGGGGC 60.015 38.462 0.00 0.00 33.59 5.80
2722 4167 7.815549 TCATGATTTGCTCTAGTTTTACGTGTA 59.184 33.333 0.00 0.00 0.00 2.90
2735 4180 5.416947 GCCAAAGATTTCATGATTTGCTCT 58.583 37.500 12.17 1.92 32.54 4.09
2737 4182 4.178540 CGCCAAAGATTTCATGATTTGCT 58.821 39.130 12.17 0.00 32.54 3.91
2752 4197 3.126858 TGCTCTAGTTTTATGCGCCAAAG 59.873 43.478 4.18 0.00 0.00 2.77
2753 4198 3.078097 TGCTCTAGTTTTATGCGCCAAA 58.922 40.909 4.18 1.96 0.00 3.28
2755 4200 2.394930 TGCTCTAGTTTTATGCGCCA 57.605 45.000 4.18 0.00 0.00 5.69
2757 4202 6.255215 TGTTATTTGCTCTAGTTTTATGCGC 58.745 36.000 0.00 0.00 0.00 6.09
2837 4294 5.803461 CACGACACTTATTTTGGATCGTAGA 59.197 40.000 0.00 0.00 39.14 2.59
2845 4302 8.582433 AAATAAAACCACGACACTTATTTTGG 57.418 30.769 0.00 0.00 31.38 3.28
2857 4314 2.553172 CCGGTCCAAAATAAAACCACGA 59.447 45.455 0.00 0.00 0.00 4.35
2861 4318 2.494471 CCCTCCGGTCCAAAATAAAACC 59.506 50.000 0.00 0.00 0.00 3.27
2900 4357 1.367346 TTTCCCTGGCATGTGGACTA 58.633 50.000 0.00 0.00 0.00 2.59
2933 4390 4.576873 TGCTCTTGTTTTATGAAACCGACA 59.423 37.500 10.29 5.95 43.57 4.35
2935 4392 5.759506 TTGCTCTTGTTTTATGAAACCGA 57.240 34.783 10.29 6.39 43.57 4.69
3015 4474 0.818040 GGACACGAACCAAACTGCCT 60.818 55.000 0.00 0.00 0.00 4.75
3016 4475 1.098712 TGGACACGAACCAAACTGCC 61.099 55.000 0.00 0.00 34.25 4.85
3017 4476 0.028902 GTGGACACGAACCAAACTGC 59.971 55.000 0.00 0.00 39.22 4.40
3018 4477 1.330521 CTGTGGACACGAACCAAACTG 59.669 52.381 0.00 0.00 39.22 3.16
3019 4478 1.065709 ACTGTGGACACGAACCAAACT 60.066 47.619 0.00 0.00 39.22 2.66
3020 4479 1.375551 ACTGTGGACACGAACCAAAC 58.624 50.000 0.00 0.00 39.22 2.93
3021 4480 1.740585 CAACTGTGGACACGAACCAAA 59.259 47.619 0.00 0.00 39.22 3.28
3022 4481 1.374560 CAACTGTGGACACGAACCAA 58.625 50.000 0.00 0.00 39.22 3.67
3023 4482 1.092921 GCAACTGTGGACACGAACCA 61.093 55.000 0.00 0.00 34.84 3.67
3024 4483 1.647084 GCAACTGTGGACACGAACC 59.353 57.895 0.00 0.00 0.00 3.62
3025 4484 1.275657 CGCAACTGTGGACACGAAC 59.724 57.895 0.00 0.00 0.00 3.95
3026 4485 1.153529 ACGCAACTGTGGACACGAA 60.154 52.632 0.00 0.00 0.00 3.85
3027 4486 1.880796 CACGCAACTGTGGACACGA 60.881 57.895 0.00 0.00 36.20 4.35
3028 4487 2.625906 CACGCAACTGTGGACACG 59.374 61.111 0.00 0.00 36.20 4.49
3029 4488 2.327940 GCACGCAACTGTGGACAC 59.672 61.111 0.00 0.00 40.26 3.67
3030 4489 2.899838 GGCACGCAACTGTGGACA 60.900 61.111 0.00 0.00 40.26 4.02
3031 4490 2.591715 AGGCACGCAACTGTGGAC 60.592 61.111 0.00 0.00 40.26 4.02
3032 4491 2.591429 CAGGCACGCAACTGTGGA 60.591 61.111 0.00 0.00 40.26 4.02
3033 4492 3.663176 CCAGGCACGCAACTGTGG 61.663 66.667 0.00 0.00 40.26 4.17
3034 4493 1.163420 TTACCAGGCACGCAACTGTG 61.163 55.000 0.00 0.00 42.81 3.66
3035 4494 0.250727 ATTACCAGGCACGCAACTGT 60.251 50.000 0.00 0.00 32.90 3.55
3036 4495 0.447801 GATTACCAGGCACGCAACTG 59.552 55.000 0.00 0.00 34.54 3.16
3037 4496 0.324943 AGATTACCAGGCACGCAACT 59.675 50.000 0.00 0.00 0.00 3.16
3038 4497 1.165270 AAGATTACCAGGCACGCAAC 58.835 50.000 0.00 0.00 0.00 4.17
3039 4498 1.904287 AAAGATTACCAGGCACGCAA 58.096 45.000 0.00 0.00 0.00 4.85
3040 4499 1.539388 CAAAAGATTACCAGGCACGCA 59.461 47.619 0.00 0.00 0.00 5.24
3041 4500 1.539827 ACAAAAGATTACCAGGCACGC 59.460 47.619 0.00 0.00 0.00 5.34
3042 4501 2.811431 TGACAAAAGATTACCAGGCACG 59.189 45.455 0.00 0.00 0.00 5.34
3043 4502 3.191371 CCTGACAAAAGATTACCAGGCAC 59.809 47.826 0.00 0.00 33.42 5.01
3044 4503 3.073798 TCCTGACAAAAGATTACCAGGCA 59.926 43.478 0.00 0.00 37.29 4.75
3045 4504 3.440522 GTCCTGACAAAAGATTACCAGGC 59.559 47.826 0.00 0.00 37.29 4.85
3046 4505 4.911390 AGTCCTGACAAAAGATTACCAGG 58.089 43.478 0.00 0.00 38.05 4.45
3047 4506 4.938226 GGAGTCCTGACAAAAGATTACCAG 59.062 45.833 0.41 0.00 0.00 4.00
3048 4507 4.349636 TGGAGTCCTGACAAAAGATTACCA 59.650 41.667 11.33 0.00 0.00 3.25
3049 4508 4.906618 TGGAGTCCTGACAAAAGATTACC 58.093 43.478 11.33 0.00 0.00 2.85
3050 4509 5.181433 GGTTGGAGTCCTGACAAAAGATTAC 59.819 44.000 11.33 0.00 0.00 1.89
3051 4510 5.163141 TGGTTGGAGTCCTGACAAAAGATTA 60.163 40.000 11.33 0.00 0.00 1.75
3052 4511 4.145052 GGTTGGAGTCCTGACAAAAGATT 58.855 43.478 11.33 0.00 0.00 2.40
3053 4512 3.138283 TGGTTGGAGTCCTGACAAAAGAT 59.862 43.478 11.33 0.00 0.00 2.40
3054 4513 2.507886 TGGTTGGAGTCCTGACAAAAGA 59.492 45.455 11.33 0.00 0.00 2.52
3055 4514 2.930950 TGGTTGGAGTCCTGACAAAAG 58.069 47.619 11.33 0.00 0.00 2.27
3056 4515 3.374042 TTGGTTGGAGTCCTGACAAAA 57.626 42.857 11.33 5.37 0.00 2.44
3057 4516 3.020984 GTTTGGTTGGAGTCCTGACAAA 58.979 45.455 11.33 14.60 0.00 2.83
3058 4517 2.241176 AGTTTGGTTGGAGTCCTGACAA 59.759 45.455 11.33 9.52 0.00 3.18
3059 4518 1.843851 AGTTTGGTTGGAGTCCTGACA 59.156 47.619 11.33 3.45 0.00 3.58
3060 4519 2.222027 CAGTTTGGTTGGAGTCCTGAC 58.778 52.381 11.33 9.08 0.00 3.51
3061 4520 1.476833 GCAGTTTGGTTGGAGTCCTGA 60.477 52.381 11.33 0.00 0.00 3.86
3062 4521 0.954452 GCAGTTTGGTTGGAGTCCTG 59.046 55.000 11.33 0.00 0.00 3.86
3063 4522 0.178990 GGCAGTTTGGTTGGAGTCCT 60.179 55.000 11.33 0.00 0.00 3.85
3064 4523 1.179174 GGGCAGTTTGGTTGGAGTCC 61.179 60.000 0.73 0.73 0.00 3.85
3065 4524 1.179174 GGGGCAGTTTGGTTGGAGTC 61.179 60.000 0.00 0.00 0.00 3.36
3066 4525 1.152546 GGGGCAGTTTGGTTGGAGT 60.153 57.895 0.00 0.00 0.00 3.85
3067 4526 1.153756 AGGGGCAGTTTGGTTGGAG 59.846 57.895 0.00 0.00 0.00 3.86
3068 4527 1.152567 CAGGGGCAGTTTGGTTGGA 60.153 57.895 0.00 0.00 0.00 3.53
3069 4528 1.152567 TCAGGGGCAGTTTGGTTGG 60.153 57.895 0.00 0.00 0.00 3.77
3070 4529 0.468029 ACTCAGGGGCAGTTTGGTTG 60.468 55.000 0.00 0.00 0.00 3.77
3071 4530 0.468029 CACTCAGGGGCAGTTTGGTT 60.468 55.000 0.00 0.00 0.00 3.67
3072 4531 1.151450 CACTCAGGGGCAGTTTGGT 59.849 57.895 0.00 0.00 0.00 3.67
3073 4532 2.270986 GCACTCAGGGGCAGTTTGG 61.271 63.158 0.00 0.00 0.00 3.28
3074 4533 1.529010 TGCACTCAGGGGCAGTTTG 60.529 57.895 0.00 0.00 34.58 2.93
3075 4534 1.529244 GTGCACTCAGGGGCAGTTT 60.529 57.895 10.32 0.00 41.35 2.66
3076 4535 2.113986 GTGCACTCAGGGGCAGTT 59.886 61.111 10.32 0.00 41.35 3.16
3077 4536 2.072874 ATTGTGCACTCAGGGGCAGT 62.073 55.000 19.41 0.00 41.35 4.40
3078 4537 1.303888 ATTGTGCACTCAGGGGCAG 60.304 57.895 19.41 0.00 41.35 4.85
3079 4538 1.604308 CATTGTGCACTCAGGGGCA 60.604 57.895 19.41 0.00 37.77 5.36
3080 4539 2.998279 GCATTGTGCACTCAGGGGC 61.998 63.158 19.41 9.30 44.26 5.80
3081 4540 3.281240 GCATTGTGCACTCAGGGG 58.719 61.111 19.41 2.96 44.26 4.79
3095 4554 1.426215 TCATCCCCATAGCATGTGCAT 59.574 47.619 7.83 0.00 45.16 3.96
3112 4571 2.665165 CTCTCACTGCTACCTCCTCAT 58.335 52.381 0.00 0.00 0.00 2.90
3114 4573 1.398692 CCTCTCACTGCTACCTCCTC 58.601 60.000 0.00 0.00 0.00 3.71
3117 4576 1.045911 CCCCCTCTCACTGCTACCTC 61.046 65.000 0.00 0.00 0.00 3.85
3118 4577 1.002274 CCCCCTCTCACTGCTACCT 59.998 63.158 0.00 0.00 0.00 3.08
3119 4578 0.399233 ATCCCCCTCTCACTGCTACC 60.399 60.000 0.00 0.00 0.00 3.18
3121 4580 1.050988 GCATCCCCCTCTCACTGCTA 61.051 60.000 0.00 0.00 0.00 3.49
3122 4581 2.373707 GCATCCCCCTCTCACTGCT 61.374 63.158 0.00 0.00 0.00 4.24
3123 4582 2.191641 GCATCCCCCTCTCACTGC 59.808 66.667 0.00 0.00 0.00 4.40
3124 4583 0.329261 TTTGCATCCCCCTCTCACTG 59.671 55.000 0.00 0.00 0.00 3.66
3125 4584 0.622665 CTTTGCATCCCCCTCTCACT 59.377 55.000 0.00 0.00 0.00 3.41
3126 4585 0.620556 TCTTTGCATCCCCCTCTCAC 59.379 55.000 0.00 0.00 0.00 3.51
3127 4586 0.620556 GTCTTTGCATCCCCCTCTCA 59.379 55.000 0.00 0.00 0.00 3.27
3129 4588 1.075601 TTGTCTTTGCATCCCCCTCT 58.924 50.000 0.00 0.00 0.00 3.69
3131 4590 1.428912 TCTTTGTCTTTGCATCCCCCT 59.571 47.619 0.00 0.00 0.00 4.79
3132 4591 1.923356 TCTTTGTCTTTGCATCCCCC 58.077 50.000 0.00 0.00 0.00 5.40
3133 4592 3.069443 TGTTTCTTTGTCTTTGCATCCCC 59.931 43.478 0.00 0.00 0.00 4.81
3134 4593 4.320608 TGTTTCTTTGTCTTTGCATCCC 57.679 40.909 0.00 0.00 0.00 3.85
3135 4594 8.538409 AATAATGTTTCTTTGTCTTTGCATCC 57.462 30.769 0.00 0.00 0.00 3.51
3137 4596 8.992073 GGAAATAATGTTTCTTTGTCTTTGCAT 58.008 29.630 2.65 0.00 0.00 3.96
3140 4599 8.885494 TGGGAAATAATGTTTCTTTGTCTTTG 57.115 30.769 2.65 0.00 0.00 2.77
3141 4600 9.325198 GTTGGGAAATAATGTTTCTTTGTCTTT 57.675 29.630 2.65 0.00 0.00 2.52
3143 4602 7.926018 GTGTTGGGAAATAATGTTTCTTTGTCT 59.074 33.333 2.65 0.00 0.00 3.41
3144 4603 7.708752 TGTGTTGGGAAATAATGTTTCTTTGTC 59.291 33.333 2.65 0.00 0.00 3.18
3145 4604 7.560368 TGTGTTGGGAAATAATGTTTCTTTGT 58.440 30.769 2.65 0.00 0.00 2.83
3147 4606 8.428063 TCATGTGTTGGGAAATAATGTTTCTTT 58.572 29.630 2.65 0.00 0.00 2.52
3150 4609 8.776376 ATTCATGTGTTGGGAAATAATGTTTC 57.224 30.769 0.00 0.00 0.00 2.78
3152 4611 9.571816 AAAATTCATGTGTTGGGAAATAATGTT 57.428 25.926 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.