Multiple sequence alignment - TraesCS2A01G031800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G031800 chr2A 100.000 5912 0 0 1 5912 14675627 14681538 0.000000e+00 10918.0
1 TraesCS2A01G031800 chr2A 90.298 773 50 16 5149 5912 14706534 14707290 0.000000e+00 989.0
2 TraesCS2A01G031800 chr2A 86.356 579 47 14 5149 5721 14725567 14726119 2.360000e-168 603.0
3 TraesCS2A01G031800 chr2A 90.680 397 20 9 5149 5542 14694139 14694521 4.090000e-141 512.0
4 TraesCS2A01G031800 chr2A 89.974 389 32 5 5528 5912 14726115 14726500 4.120000e-136 496.0
5 TraesCS2A01G031800 chr2A 88.081 344 31 7 5573 5912 14694520 14694857 3.320000e-107 399.0
6 TraesCS2A01G031800 chr2A 89.274 317 28 3 5115 5430 14716183 14716494 5.550000e-105 392.0
7 TraesCS2A01G031800 chr2A 100.000 72 0 0 200 271 14675791 14675862 3.720000e-27 134.0
8 TraesCS2A01G031800 chr2A 100.000 72 0 0 165 236 14675826 14675897 3.720000e-27 134.0
9 TraesCS2A01G031800 chr2A 100.000 37 0 0 235 271 14675791 14675827 1.060000e-07 69.4
10 TraesCS2A01G031800 chr2A 100.000 37 0 0 165 201 14675861 14675897 1.060000e-07 69.4
11 TraesCS2A01G031800 chr2D 93.544 5747 246 58 235 5912 12618930 12624620 0.000000e+00 8442.0
12 TraesCS2A01G031800 chr2D 91.277 642 40 14 5268 5903 12629868 12630499 0.000000e+00 861.0
13 TraesCS2A01G031800 chr2B 91.793 5739 287 73 253 5907 20154125 20148487 0.000000e+00 7819.0
14 TraesCS2A01G031800 chr2B 92.908 141 8 2 10 148 656513415 656513275 2.790000e-48 204.0
15 TraesCS2A01G031800 chr1B 93.151 146 10 0 1 146 484457700 484457555 1.290000e-51 215.0
16 TraesCS2A01G031800 chr5D 93.571 140 9 0 7 146 521623120 521622981 6.000000e-50 209.0
17 TraesCS2A01G031800 chr5D 92.414 145 11 0 2 146 493226156 493226012 2.160000e-49 207.0
18 TraesCS2A01G031800 chr1D 93.007 143 10 0 6 148 492370351 492370493 6.000000e-50 209.0
19 TraesCS2A01G031800 chr1D 91.781 146 12 0 1 146 420094258 420094113 2.790000e-48 204.0
20 TraesCS2A01G031800 chr1D 90.728 151 14 0 1 151 288787579 288787429 1.000000e-47 202.0
21 TraesCS2A01G031800 chr7D 90.728 151 14 0 1 151 596551799 596551649 1.000000e-47 202.0
22 TraesCS2A01G031800 chr6D 90.789 152 13 1 1 152 35508199 35508349 1.000000e-47 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G031800 chr2A 14675627 14681538 5911 False 10918.0 10918 100.0000 1 5912 1 chr2A.!!$F1 5911
1 TraesCS2A01G031800 chr2A 14706534 14707290 756 False 989.0 989 90.2980 5149 5912 1 chr2A.!!$F2 763
2 TraesCS2A01G031800 chr2A 14725567 14726500 933 False 549.5 603 88.1650 5149 5912 2 chr2A.!!$F6 763
3 TraesCS2A01G031800 chr2A 14694139 14694857 718 False 455.5 512 89.3805 5149 5912 2 chr2A.!!$F5 763
4 TraesCS2A01G031800 chr2D 12618930 12624620 5690 False 8442.0 8442 93.5440 235 5912 1 chr2D.!!$F1 5677
5 TraesCS2A01G031800 chr2D 12629868 12630499 631 False 861.0 861 91.2770 5268 5903 1 chr2D.!!$F2 635
6 TraesCS2A01G031800 chr2B 20148487 20154125 5638 True 7819.0 7819 91.7930 253 5907 1 chr2B.!!$R1 5654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 586 0.031857 TCCAGCCAAATGCAACAACG 59.968 50.000 0.00 0.00 44.83 4.10 F
582 591 1.808133 GCCAAATGCAACAACGGGAAA 60.808 47.619 0.00 0.00 40.77 3.13 F
1626 1703 0.034186 CCCATGACTAAGGGCAGCAA 60.034 55.000 0.00 0.00 38.44 3.91 F
1666 1743 0.738063 CTGTACGGCCATTGTGCGTA 60.738 55.000 2.24 0.00 0.00 4.42 F
2056 2143 0.823356 GCTGACCTTTTGCACCTGGA 60.823 55.000 0.00 0.00 0.00 3.86 F
2194 2282 1.180029 CCTTGGAATGAGGGCTTGTG 58.820 55.000 0.00 0.00 0.00 3.33 F
2513 2601 1.187087 GGAGAGTACCACTGGACCAG 58.813 60.000 20.45 20.45 37.52 4.00 F
3671 3770 0.964700 GCTTTCTGCCTTTCTGCCTT 59.035 50.000 0.00 0.00 35.15 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1607 1684 0.034186 TTGCTGCCCTTAGTCATGGG 60.034 55.000 0.00 0.00 46.00 4.00 R
2513 2601 1.468520 TGCTCGCTTGATACCTTTTGC 59.531 47.619 0.00 0.00 0.00 3.68 R
2548 2636 1.896220 AGAGCGCACCTTCAATTGAA 58.104 45.000 19.45 19.45 0.00 2.69 R
2814 2902 1.980765 TCTTTGTCAGCAGACCTGGAT 59.019 47.619 6.80 0.00 44.33 3.41 R
3666 3765 2.092429 ACTGTGAACTTTGAGGAAGGCA 60.092 45.455 0.00 0.00 39.79 4.75 R
3667 3766 2.576615 ACTGTGAACTTTGAGGAAGGC 58.423 47.619 0.00 0.00 39.79 4.35 R
3858 3959 3.618351 CTCATCCAACCTGCATTCTTCT 58.382 45.455 0.00 0.00 0.00 2.85 R
4927 5028 0.376852 TCATTGCTATTTCGCCACGC 59.623 50.000 0.00 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.456447 CTACCGTGACTTCGTAAATTTCAA 57.544 37.500 0.00 0.00 0.00 2.69
24 25 5.738118 ACCGTGACTTCGTAAATTTCAAA 57.262 34.783 0.00 0.00 0.00 2.69
25 26 6.121613 ACCGTGACTTCGTAAATTTCAAAA 57.878 33.333 0.00 0.00 0.00 2.44
26 27 6.731164 ACCGTGACTTCGTAAATTTCAAAAT 58.269 32.000 0.00 0.00 0.00 1.82
27 28 6.635239 ACCGTGACTTCGTAAATTTCAAAATG 59.365 34.615 0.00 0.00 0.00 2.32
28 29 6.853872 CCGTGACTTCGTAAATTTCAAAATGA 59.146 34.615 0.00 0.00 0.00 2.57
29 30 7.537306 CCGTGACTTCGTAAATTTCAAAATGAT 59.463 33.333 0.00 0.00 0.00 2.45
30 31 9.536558 CGTGACTTCGTAAATTTCAAAATGATA 57.463 29.630 0.00 0.00 0.00 2.15
34 35 9.301153 ACTTCGTAAATTTCAAAATGATATGCC 57.699 29.630 0.00 0.00 0.00 4.40
35 36 7.906611 TCGTAAATTTCAAAATGATATGCCG 57.093 32.000 0.00 0.00 0.00 5.69
36 37 6.915300 TCGTAAATTTCAAAATGATATGCCGG 59.085 34.615 0.00 0.00 0.00 6.13
37 38 5.989551 AAATTTCAAAATGATATGCCGGC 57.010 34.783 22.73 22.73 0.00 6.13
38 39 4.942761 ATTTCAAAATGATATGCCGGCT 57.057 36.364 29.70 15.76 0.00 5.52
39 40 3.988379 TTCAAAATGATATGCCGGCTC 57.012 42.857 29.70 17.89 0.00 4.70
40 41 2.929641 TCAAAATGATATGCCGGCTCA 58.070 42.857 29.70 23.34 0.00 4.26
41 42 2.880268 TCAAAATGATATGCCGGCTCAG 59.120 45.455 29.70 11.05 0.00 3.35
42 43 2.620115 CAAAATGATATGCCGGCTCAGT 59.380 45.455 29.70 19.53 0.00 3.41
43 44 2.175878 AATGATATGCCGGCTCAGTC 57.824 50.000 29.70 19.55 0.00 3.51
44 45 1.051008 ATGATATGCCGGCTCAGTCA 58.949 50.000 29.70 24.18 0.00 3.41
45 46 1.051008 TGATATGCCGGCTCAGTCAT 58.949 50.000 29.70 14.18 0.00 3.06
46 47 1.417517 TGATATGCCGGCTCAGTCATT 59.582 47.619 29.70 3.35 0.00 2.57
47 48 2.072298 GATATGCCGGCTCAGTCATTC 58.928 52.381 29.70 9.22 0.00 2.67
48 49 0.249447 TATGCCGGCTCAGTCATTCG 60.249 55.000 29.70 0.00 0.00 3.34
49 50 2.892425 GCCGGCTCAGTCATTCGG 60.892 66.667 22.15 0.00 43.13 4.30
50 51 2.892640 CCGGCTCAGTCATTCGGA 59.107 61.111 0.00 0.00 42.94 4.55
51 52 1.227089 CCGGCTCAGTCATTCGGAG 60.227 63.158 0.00 0.00 42.94 4.63
52 53 1.227089 CGGCTCAGTCATTCGGAGG 60.227 63.158 0.00 0.00 38.48 4.30
53 54 1.901085 GGCTCAGTCATTCGGAGGT 59.099 57.895 0.00 0.00 38.48 3.85
54 55 0.460987 GGCTCAGTCATTCGGAGGTG 60.461 60.000 0.00 0.00 38.48 4.00
55 56 1.086634 GCTCAGTCATTCGGAGGTGC 61.087 60.000 0.00 0.00 38.48 5.01
56 57 0.534412 CTCAGTCATTCGGAGGTGCT 59.466 55.000 0.00 0.00 35.32 4.40
57 58 0.532573 TCAGTCATTCGGAGGTGCTC 59.467 55.000 0.00 0.00 0.00 4.26
58 59 0.247460 CAGTCATTCGGAGGTGCTCA 59.753 55.000 0.00 0.00 31.08 4.26
59 60 1.134580 CAGTCATTCGGAGGTGCTCAT 60.135 52.381 0.00 0.00 31.08 2.90
60 61 2.101415 CAGTCATTCGGAGGTGCTCATA 59.899 50.000 0.00 0.00 31.08 2.15
61 62 2.363680 AGTCATTCGGAGGTGCTCATAG 59.636 50.000 0.00 0.00 31.08 2.23
62 63 1.688735 TCATTCGGAGGTGCTCATAGG 59.311 52.381 0.00 0.00 31.08 2.57
63 64 1.414181 CATTCGGAGGTGCTCATAGGT 59.586 52.381 0.00 0.00 31.08 3.08
64 65 0.824109 TTCGGAGGTGCTCATAGGTG 59.176 55.000 0.00 0.00 31.08 4.00
65 66 0.324368 TCGGAGGTGCTCATAGGTGT 60.324 55.000 0.00 0.00 31.08 4.16
66 67 1.064240 TCGGAGGTGCTCATAGGTGTA 60.064 52.381 0.00 0.00 31.08 2.90
67 68 1.338337 CGGAGGTGCTCATAGGTGTAG 59.662 57.143 0.00 0.00 31.08 2.74
68 69 1.689273 GGAGGTGCTCATAGGTGTAGG 59.311 57.143 0.00 0.00 31.08 3.18
69 70 1.689273 GAGGTGCTCATAGGTGTAGGG 59.311 57.143 0.00 0.00 0.00 3.53
70 71 1.008449 AGGTGCTCATAGGTGTAGGGT 59.992 52.381 0.00 0.00 0.00 4.34
71 72 1.139058 GGTGCTCATAGGTGTAGGGTG 59.861 57.143 0.00 0.00 0.00 4.61
72 73 1.831736 GTGCTCATAGGTGTAGGGTGT 59.168 52.381 0.00 0.00 0.00 4.16
73 74 1.831106 TGCTCATAGGTGTAGGGTGTG 59.169 52.381 0.00 0.00 0.00 3.82
74 75 1.473434 GCTCATAGGTGTAGGGTGTGC 60.473 57.143 0.00 0.00 0.00 4.57
75 76 1.831106 CTCATAGGTGTAGGGTGTGCA 59.169 52.381 0.00 0.00 0.00 4.57
76 77 2.435805 CTCATAGGTGTAGGGTGTGCAT 59.564 50.000 0.00 0.00 0.00 3.96
77 78 2.170397 TCATAGGTGTAGGGTGTGCATG 59.830 50.000 0.00 0.00 0.00 4.06
78 79 1.651737 TAGGTGTAGGGTGTGCATGT 58.348 50.000 0.00 0.00 0.00 3.21
79 80 0.036732 AGGTGTAGGGTGTGCATGTG 59.963 55.000 0.00 0.00 0.00 3.21
80 81 0.250727 GGTGTAGGGTGTGCATGTGT 60.251 55.000 0.00 0.00 0.00 3.72
81 82 0.874390 GTGTAGGGTGTGCATGTGTG 59.126 55.000 0.00 0.00 0.00 3.82
91 92 1.419922 GCATGTGTGCGTTCGTAGG 59.580 57.895 0.00 0.00 42.28 3.18
92 93 1.966493 GCATGTGTGCGTTCGTAGGG 61.966 60.000 0.00 0.00 42.28 3.53
93 94 1.079405 ATGTGTGCGTTCGTAGGGG 60.079 57.895 0.00 0.00 0.00 4.79
94 95 1.823169 ATGTGTGCGTTCGTAGGGGT 61.823 55.000 0.00 0.00 0.00 4.95
95 96 2.025418 GTGTGCGTTCGTAGGGGTG 61.025 63.158 0.00 0.00 0.00 4.61
96 97 2.201708 TGTGCGTTCGTAGGGGTGA 61.202 57.895 0.00 0.00 0.00 4.02
97 98 1.005867 GTGCGTTCGTAGGGGTGAA 60.006 57.895 0.00 0.00 0.00 3.18
98 99 0.390735 GTGCGTTCGTAGGGGTGAAT 60.391 55.000 0.00 0.00 0.00 2.57
99 100 0.390603 TGCGTTCGTAGGGGTGAATG 60.391 55.000 0.00 0.00 0.00 2.67
100 101 0.390735 GCGTTCGTAGGGGTGAATGT 60.391 55.000 0.00 0.00 0.00 2.71
101 102 1.135024 GCGTTCGTAGGGGTGAATGTA 60.135 52.381 0.00 0.00 0.00 2.29
102 103 2.482490 GCGTTCGTAGGGGTGAATGTAT 60.482 50.000 0.00 0.00 0.00 2.29
103 104 3.120792 CGTTCGTAGGGGTGAATGTATG 58.879 50.000 0.00 0.00 0.00 2.39
104 105 2.870411 GTTCGTAGGGGTGAATGTATGC 59.130 50.000 0.00 0.00 0.00 3.14
105 106 1.067974 TCGTAGGGGTGAATGTATGCG 59.932 52.381 0.00 0.00 0.00 4.73
106 107 1.226746 GTAGGGGTGAATGTATGCGC 58.773 55.000 0.00 0.00 0.00 6.09
107 108 0.249699 TAGGGGTGAATGTATGCGCG 60.250 55.000 0.00 0.00 0.00 6.86
108 109 1.817941 GGGGTGAATGTATGCGCGT 60.818 57.895 8.43 7.55 0.00 6.01
109 110 1.351707 GGGTGAATGTATGCGCGTG 59.648 57.895 13.61 0.00 0.00 5.34
110 111 1.297598 GGTGAATGTATGCGCGTGC 60.298 57.895 15.48 15.48 43.20 5.34
121 122 3.333189 CGCGTGCATATGAGCGCT 61.333 61.111 28.42 11.27 46.56 5.92
122 123 2.874694 CGCGTGCATATGAGCGCTT 61.875 57.895 28.42 0.00 46.56 4.68
123 124 1.368493 GCGTGCATATGAGCGCTTG 60.368 57.895 26.18 6.97 45.48 4.01
124 125 1.368493 CGTGCATATGAGCGCTTGC 60.368 57.895 21.88 21.88 42.62 4.01
125 126 1.723273 GTGCATATGAGCGCTTGCA 59.277 52.632 26.15 26.15 42.41 4.08
126 127 0.309922 GTGCATATGAGCGCTTGCAT 59.690 50.000 30.64 23.15 45.80 3.96
127 128 0.589708 TGCATATGAGCGCTTGCATC 59.410 50.000 26.15 8.46 39.98 3.91
128 129 0.873054 GCATATGAGCGCTTGCATCT 59.127 50.000 23.30 8.72 42.66 2.90
129 130 1.399855 GCATATGAGCGCTTGCATCTG 60.400 52.381 23.30 19.22 42.66 2.90
130 131 1.871676 CATATGAGCGCTTGCATCTGT 59.128 47.619 13.26 0.00 42.66 3.41
131 132 2.888834 TATGAGCGCTTGCATCTGTA 57.111 45.000 13.26 0.00 42.66 2.74
132 133 1.293924 ATGAGCGCTTGCATCTGTAC 58.706 50.000 13.26 0.00 42.66 2.90
133 134 0.247460 TGAGCGCTTGCATCTGTACT 59.753 50.000 13.26 0.00 42.66 2.73
134 135 0.649475 GAGCGCTTGCATCTGTACTG 59.351 55.000 13.26 0.00 42.66 2.74
135 136 0.036952 AGCGCTTGCATCTGTACTGT 60.037 50.000 2.64 0.00 42.66 3.55
136 137 0.095935 GCGCTTGCATCTGTACTGTG 59.904 55.000 0.00 0.00 38.92 3.66
137 138 1.432514 CGCTTGCATCTGTACTGTGT 58.567 50.000 0.00 0.00 0.00 3.72
138 139 1.800586 CGCTTGCATCTGTACTGTGTT 59.199 47.619 0.00 0.00 0.00 3.32
139 140 2.993220 CGCTTGCATCTGTACTGTGTTA 59.007 45.455 0.00 0.00 0.00 2.41
140 141 3.431912 CGCTTGCATCTGTACTGTGTTAA 59.568 43.478 0.00 0.00 0.00 2.01
141 142 4.084066 CGCTTGCATCTGTACTGTGTTAAA 60.084 41.667 0.00 0.00 0.00 1.52
142 143 5.559991 CGCTTGCATCTGTACTGTGTTAAAA 60.560 40.000 0.00 0.00 0.00 1.52
143 144 6.205784 GCTTGCATCTGTACTGTGTTAAAAA 58.794 36.000 0.00 0.00 0.00 1.94
166 167 6.834168 AAAACAAATCGTCACCCATTATCT 57.166 33.333 0.00 0.00 0.00 1.98
167 168 7.931578 AAAACAAATCGTCACCCATTATCTA 57.068 32.000 0.00 0.00 0.00 1.98
168 169 7.553881 AAACAAATCGTCACCCATTATCTAG 57.446 36.000 0.00 0.00 0.00 2.43
169 170 6.235231 ACAAATCGTCACCCATTATCTAGT 57.765 37.500 0.00 0.00 0.00 2.57
170 171 6.650120 ACAAATCGTCACCCATTATCTAGTT 58.350 36.000 0.00 0.00 0.00 2.24
171 172 6.538742 ACAAATCGTCACCCATTATCTAGTTG 59.461 38.462 0.00 0.00 0.00 3.16
172 173 4.054780 TCGTCACCCATTATCTAGTTGC 57.945 45.455 0.00 0.00 0.00 4.17
173 174 3.449377 TCGTCACCCATTATCTAGTTGCA 59.551 43.478 0.00 0.00 0.00 4.08
174 175 4.100963 TCGTCACCCATTATCTAGTTGCAT 59.899 41.667 0.00 0.00 0.00 3.96
175 176 4.449068 CGTCACCCATTATCTAGTTGCATC 59.551 45.833 0.00 0.00 0.00 3.91
176 177 5.368145 GTCACCCATTATCTAGTTGCATCA 58.632 41.667 0.00 0.00 0.00 3.07
177 178 5.237344 GTCACCCATTATCTAGTTGCATCAC 59.763 44.000 0.00 0.00 0.00 3.06
178 179 4.516698 CACCCATTATCTAGTTGCATCACC 59.483 45.833 0.00 0.00 0.00 4.02
179 180 4.165950 ACCCATTATCTAGTTGCATCACCA 59.834 41.667 0.00 0.00 0.00 4.17
180 181 5.163055 ACCCATTATCTAGTTGCATCACCAT 60.163 40.000 0.00 0.00 0.00 3.55
181 182 6.044287 ACCCATTATCTAGTTGCATCACCATA 59.956 38.462 0.00 0.00 0.00 2.74
182 183 7.114754 CCCATTATCTAGTTGCATCACCATAT 58.885 38.462 0.00 0.00 0.00 1.78
183 184 7.281774 CCCATTATCTAGTTGCATCACCATATC 59.718 40.741 0.00 0.00 0.00 1.63
184 185 8.045507 CCATTATCTAGTTGCATCACCATATCT 58.954 37.037 0.00 0.00 0.00 1.98
185 186 9.445878 CATTATCTAGTTGCATCACCATATCTT 57.554 33.333 0.00 0.00 0.00 2.40
186 187 9.664332 ATTATCTAGTTGCATCACCATATCTTC 57.336 33.333 0.00 0.00 0.00 2.87
187 188 6.484364 TCTAGTTGCATCACCATATCTTCA 57.516 37.500 0.00 0.00 0.00 3.02
188 189 6.519382 TCTAGTTGCATCACCATATCTTCAG 58.481 40.000 0.00 0.00 0.00 3.02
189 190 3.881688 AGTTGCATCACCATATCTTCAGC 59.118 43.478 0.00 0.00 0.00 4.26
190 191 3.564053 TGCATCACCATATCTTCAGCA 57.436 42.857 0.00 0.00 0.00 4.41
191 192 4.094830 TGCATCACCATATCTTCAGCAT 57.905 40.909 0.00 0.00 0.00 3.79
192 193 4.466827 TGCATCACCATATCTTCAGCATT 58.533 39.130 0.00 0.00 0.00 3.56
193 194 5.623169 TGCATCACCATATCTTCAGCATTA 58.377 37.500 0.00 0.00 0.00 1.90
194 195 5.471116 TGCATCACCATATCTTCAGCATTAC 59.529 40.000 0.00 0.00 0.00 1.89
195 196 5.471116 GCATCACCATATCTTCAGCATTACA 59.529 40.000 0.00 0.00 0.00 2.41
196 197 6.567321 GCATCACCATATCTTCAGCATTACAC 60.567 42.308 0.00 0.00 0.00 2.90
197 198 5.049828 TCACCATATCTTCAGCATTACACG 58.950 41.667 0.00 0.00 0.00 4.49
198 199 4.212004 CACCATATCTTCAGCATTACACGG 59.788 45.833 0.00 0.00 0.00 4.94
199 200 4.141711 ACCATATCTTCAGCATTACACGGT 60.142 41.667 0.00 0.00 0.00 4.83
200 201 4.449068 CCATATCTTCAGCATTACACGGTC 59.551 45.833 0.00 0.00 0.00 4.79
201 202 3.895232 ATCTTCAGCATTACACGGTCT 57.105 42.857 0.00 0.00 0.00 3.85
202 203 6.447162 CATATCTTCAGCATTACACGGTCTA 58.553 40.000 0.00 0.00 0.00 2.59
203 204 4.371855 TCTTCAGCATTACACGGTCTAG 57.628 45.455 0.00 0.00 0.00 2.43
204 205 3.762288 TCTTCAGCATTACACGGTCTAGT 59.238 43.478 0.00 0.00 0.00 2.57
205 206 4.219944 TCTTCAGCATTACACGGTCTAGTT 59.780 41.667 0.00 0.00 0.00 2.24
206 207 3.845178 TCAGCATTACACGGTCTAGTTG 58.155 45.455 0.00 0.00 0.00 3.16
207 208 2.348666 CAGCATTACACGGTCTAGTTGC 59.651 50.000 0.00 0.00 0.00 4.17
208 209 2.028476 AGCATTACACGGTCTAGTTGCA 60.028 45.455 0.00 0.00 29.37 4.08
209 210 2.936498 GCATTACACGGTCTAGTTGCAT 59.064 45.455 0.00 0.00 0.00 3.96
210 211 3.001330 GCATTACACGGTCTAGTTGCATC 59.999 47.826 0.00 0.00 0.00 3.91
211 212 3.945981 TTACACGGTCTAGTTGCATCA 57.054 42.857 0.00 0.00 0.00 3.07
212 213 2.080286 ACACGGTCTAGTTGCATCAC 57.920 50.000 0.00 0.00 0.00 3.06
213 214 1.337823 ACACGGTCTAGTTGCATCACC 60.338 52.381 0.00 0.00 0.00 4.02
214 215 0.973632 ACGGTCTAGTTGCATCACCA 59.026 50.000 0.00 0.00 0.00 4.17
215 216 1.555075 ACGGTCTAGTTGCATCACCAT 59.445 47.619 0.00 0.00 0.00 3.55
216 217 2.764010 ACGGTCTAGTTGCATCACCATA 59.236 45.455 0.00 0.00 0.00 2.74
217 218 3.388024 ACGGTCTAGTTGCATCACCATAT 59.612 43.478 0.00 0.00 0.00 1.78
218 219 3.990469 CGGTCTAGTTGCATCACCATATC 59.010 47.826 0.00 0.00 0.00 1.63
219 220 4.262207 CGGTCTAGTTGCATCACCATATCT 60.262 45.833 0.00 0.00 0.00 1.98
220 221 5.615289 GGTCTAGTTGCATCACCATATCTT 58.385 41.667 0.00 0.00 0.00 2.40
221 222 5.698545 GGTCTAGTTGCATCACCATATCTTC 59.301 44.000 0.00 0.00 0.00 2.87
222 223 6.283694 GTCTAGTTGCATCACCATATCTTCA 58.716 40.000 0.00 0.00 0.00 3.02
223 224 6.423302 GTCTAGTTGCATCACCATATCTTCAG 59.577 42.308 0.00 0.00 0.00 3.02
224 225 3.881688 AGTTGCATCACCATATCTTCAGC 59.118 43.478 0.00 0.00 0.00 4.26
225 226 3.564053 TGCATCACCATATCTTCAGCA 57.436 42.857 0.00 0.00 0.00 4.41
226 227 4.094830 TGCATCACCATATCTTCAGCAT 57.905 40.909 0.00 0.00 0.00 3.79
227 228 4.466827 TGCATCACCATATCTTCAGCATT 58.533 39.130 0.00 0.00 0.00 3.56
228 229 5.623169 TGCATCACCATATCTTCAGCATTA 58.377 37.500 0.00 0.00 0.00 1.90
229 230 5.471116 TGCATCACCATATCTTCAGCATTAC 59.529 40.000 0.00 0.00 0.00 1.89
230 231 5.471116 GCATCACCATATCTTCAGCATTACA 59.529 40.000 0.00 0.00 0.00 2.41
231 232 6.567321 GCATCACCATATCTTCAGCATTACAC 60.567 42.308 0.00 0.00 0.00 2.90
232 233 5.049828 TCACCATATCTTCAGCATTACACG 58.950 41.667 0.00 0.00 0.00 4.49
233 234 4.212004 CACCATATCTTCAGCATTACACGG 59.788 45.833 0.00 0.00 0.00 4.94
241 242 3.845178 TCAGCATTACACGGTCTAGTTG 58.155 45.455 0.00 0.00 0.00 3.16
250 251 1.555075 ACGGTCTAGTTGCATCACCAT 59.445 47.619 0.00 0.00 0.00 3.55
265 266 5.471116 GCATCACCATATCTTCAGCATTACA 59.529 40.000 0.00 0.00 0.00 2.41
269 270 4.141711 ACCATATCTTCAGCATTACACGGT 60.142 41.667 0.00 0.00 0.00 4.83
291 293 6.978338 GGTCAACCGTTAGAGATGTGATATA 58.022 40.000 0.00 0.00 0.00 0.86
310 312 1.722011 AGACCATGTTAACGCGAAGG 58.278 50.000 15.93 5.88 0.00 3.46
332 334 2.221055 ACTCAAAGCTTTTCGTGCTACG 59.779 45.455 9.53 2.79 44.19 3.51
350 352 3.777910 GGGTGGACGCCCGTACAT 61.778 66.667 9.16 0.00 41.49 2.29
355 357 1.446618 GGACGCCCGTACATCGTTT 60.447 57.895 0.00 0.00 36.50 3.60
358 360 0.600782 ACGCCCGTACATCGTTTTGT 60.601 50.000 0.00 0.00 37.94 2.83
362 364 1.533731 CCCGTACATCGTTTTGTGCTT 59.466 47.619 0.00 0.00 37.94 3.91
366 368 0.660488 ACATCGTTTTGTGCTTGCGA 59.340 45.000 0.00 0.00 36.02 5.10
371 373 2.096466 TCGTTTTGTGCTTGCGATACTG 60.096 45.455 0.00 0.00 0.00 2.74
392 394 3.626670 TGTTTACATCCGAACAAACCGTT 59.373 39.130 0.00 0.00 41.86 4.44
396 398 3.934068 ACATCCGAACAAACCGTTATCT 58.066 40.909 0.00 0.00 38.19 1.98
398 400 4.390909 ACATCCGAACAAACCGTTATCTTC 59.609 41.667 0.00 0.00 38.19 2.87
399 401 2.988493 TCCGAACAAACCGTTATCTTCG 59.012 45.455 9.40 9.40 38.19 3.79
400 402 2.733026 CCGAACAAACCGTTATCTTCGT 59.267 45.455 12.98 0.00 38.19 3.85
401 403 3.181537 CCGAACAAACCGTTATCTTCGTC 60.182 47.826 12.98 0.00 38.19 4.20
402 404 3.671928 CGAACAAACCGTTATCTTCGTCT 59.328 43.478 8.62 0.00 38.19 4.18
403 405 4.853196 CGAACAAACCGTTATCTTCGTCTA 59.147 41.667 8.62 0.00 38.19 2.59
404 406 5.003214 CGAACAAACCGTTATCTTCGTCTAG 59.997 44.000 8.62 0.00 38.19 2.43
405 407 4.171754 ACAAACCGTTATCTTCGTCTAGC 58.828 43.478 0.00 0.00 0.00 3.42
406 408 3.433513 AACCGTTATCTTCGTCTAGCC 57.566 47.619 0.00 0.00 0.00 3.93
407 409 1.332997 ACCGTTATCTTCGTCTAGCCG 59.667 52.381 0.00 0.00 0.00 5.52
408 410 1.396644 CGTTATCTTCGTCTAGCCGC 58.603 55.000 0.00 0.00 0.00 6.53
432 436 0.109919 CACGTCTCGAACATCCACGA 60.110 55.000 0.00 0.00 37.03 4.35
447 451 2.187946 CGACTCCAGCATCACCCC 59.812 66.667 0.00 0.00 0.00 4.95
449 453 2.284625 ACTCCAGCATCACCCCGA 60.285 61.111 0.00 0.00 0.00 5.14
453 457 2.350895 CAGCATCACCCCGACCAA 59.649 61.111 0.00 0.00 0.00 3.67
501 505 1.298859 AACGCGGAGAACTCAATGCC 61.299 55.000 12.47 0.00 0.00 4.40
518 523 4.867599 CTTCCGTACCCCGCGAGC 62.868 72.222 8.23 0.00 34.38 5.03
552 561 0.038159 CGTCCTCCGATAGCCCATTC 60.038 60.000 0.00 0.00 39.56 2.67
567 576 3.134442 GCCCATTCATTATTCCAGCCAAA 59.866 43.478 0.00 0.00 0.00 3.28
568 577 4.202388 GCCCATTCATTATTCCAGCCAAAT 60.202 41.667 0.00 0.00 0.00 2.32
569 578 5.302360 CCCATTCATTATTCCAGCCAAATG 58.698 41.667 0.00 0.00 0.00 2.32
570 579 4.753107 CCATTCATTATTCCAGCCAAATGC 59.247 41.667 0.00 0.00 41.71 3.56
572 581 5.417754 TTCATTATTCCAGCCAAATGCAA 57.582 34.783 0.00 0.00 44.83 4.08
573 582 4.757594 TCATTATTCCAGCCAAATGCAAC 58.242 39.130 0.00 0.00 44.83 4.17
575 584 4.613925 TTATTCCAGCCAAATGCAACAA 57.386 36.364 0.00 0.00 44.83 2.83
576 585 2.237393 TTCCAGCCAAATGCAACAAC 57.763 45.000 0.00 0.00 44.83 3.32
577 586 0.031857 TCCAGCCAAATGCAACAACG 59.968 50.000 0.00 0.00 44.83 4.10
582 591 1.808133 GCCAAATGCAACAACGGGAAA 60.808 47.619 0.00 0.00 40.77 3.13
619 628 4.481463 CCTTTCGACGGCAACATTTAAAT 58.519 39.130 0.00 0.00 0.00 1.40
664 673 4.130281 GGAAGGAAACGCGCGTCG 62.130 66.667 37.77 18.70 45.38 5.12
791 801 5.913946 AAACCCTCTATAAATCCCAGGAG 57.086 43.478 0.00 0.00 0.00 3.69
822 832 7.432869 TCAAGAAGAAGAACAAGAGAGAGAAG 58.567 38.462 0.00 0.00 0.00 2.85
828 838 4.344104 AGAACAAGAGAGAGAAGGAGGAG 58.656 47.826 0.00 0.00 0.00 3.69
843 853 2.499693 GGAGGAGAGAGAAACAAGGAGG 59.500 54.545 0.00 0.00 0.00 4.30
1462 1508 5.124297 TCGTGATTGATCCTAGTGTTCGTTA 59.876 40.000 0.00 0.00 0.00 3.18
1524 1601 2.704572 TGGGGTTTTTGTGTTTGCTTG 58.295 42.857 0.00 0.00 0.00 4.01
1551 1628 4.757594 AGAGTTTCTGCTAGCTGAATCAG 58.242 43.478 30.78 16.27 34.68 2.90
1599 1676 2.487265 GGGCAGTGGTAATGTATCCAGG 60.487 54.545 0.00 0.00 34.16 4.45
1607 1684 4.654262 TGGTAATGTATCCAGGGAACTCTC 59.346 45.833 0.00 0.00 40.21 3.20
1623 1700 1.415659 CTCTCCCATGACTAAGGGCAG 59.584 57.143 0.00 0.00 45.07 4.85
1626 1703 0.034186 CCCATGACTAAGGGCAGCAA 60.034 55.000 0.00 0.00 38.44 3.91
1658 1735 1.143183 CGGTTAGCTGTACGGCCAT 59.857 57.895 23.09 8.38 0.00 4.40
1666 1743 0.738063 CTGTACGGCCATTGTGCGTA 60.738 55.000 2.24 0.00 0.00 4.42
1787 1864 5.960811 AGGGAACATCTCAGATGAAGACTAA 59.039 40.000 22.08 0.00 0.00 2.24
1788 1865 6.614906 AGGGAACATCTCAGATGAAGACTAAT 59.385 38.462 22.08 0.00 0.00 1.73
1789 1866 7.786943 AGGGAACATCTCAGATGAAGACTAATA 59.213 37.037 22.08 0.00 0.00 0.98
1790 1867 7.870445 GGGAACATCTCAGATGAAGACTAATAC 59.130 40.741 22.08 0.00 0.00 1.89
1791 1868 7.593273 GGAACATCTCAGATGAAGACTAATACG 59.407 40.741 22.08 0.00 0.00 3.06
1792 1869 7.575414 ACATCTCAGATGAAGACTAATACGT 57.425 36.000 22.08 0.00 0.00 3.57
1793 1870 8.678593 ACATCTCAGATGAAGACTAATACGTA 57.321 34.615 22.08 0.00 0.00 3.57
1794 1871 8.561212 ACATCTCAGATGAAGACTAATACGTAC 58.439 37.037 22.08 0.00 0.00 3.67
1795 1872 8.779303 CATCTCAGATGAAGACTAATACGTACT 58.221 37.037 9.27 0.00 0.00 2.73
1836 1913 9.231297 ACATTGTGTATGTGAGCTTTAGTTTAT 57.769 29.630 0.00 0.00 45.71 1.40
2011 2088 5.539048 TGTCTAAAGTGAGTTGTAGAAGCC 58.461 41.667 0.00 0.00 0.00 4.35
2056 2143 0.823356 GCTGACCTTTTGCACCTGGA 60.823 55.000 0.00 0.00 0.00 3.86
2071 2158 5.069648 TGCACCTGGACTTATGAGATAAGAG 59.930 44.000 0.00 0.00 43.85 2.85
2072 2159 5.303078 GCACCTGGACTTATGAGATAAGAGA 59.697 44.000 0.00 0.00 43.85 3.10
2073 2160 6.014669 GCACCTGGACTTATGAGATAAGAGAT 60.015 42.308 0.00 0.00 43.85 2.75
2124 2211 5.082059 CGCTGTGCACAGTTTTCTTATAAG 58.918 41.667 39.30 17.24 45.45 1.73
2192 2280 2.892025 CCCTTGGAATGAGGGCTTG 58.108 57.895 0.00 0.00 46.90 4.01
2194 2282 1.180029 CCTTGGAATGAGGGCTTGTG 58.820 55.000 0.00 0.00 0.00 3.33
2301 2389 8.879759 TGGATGTCGTAATTCATCTTTAGAAAC 58.120 33.333 5.21 0.00 39.93 2.78
2324 2412 6.261118 ACGACATAGTGTTCTATTACGGTTC 58.739 40.000 0.00 0.00 37.16 3.62
2325 2413 6.094603 ACGACATAGTGTTCTATTACGGTTCT 59.905 38.462 0.00 0.00 37.16 3.01
2326 2414 6.971184 CGACATAGTGTTCTATTACGGTTCTT 59.029 38.462 0.00 0.00 34.98 2.52
2327 2415 7.487189 CGACATAGTGTTCTATTACGGTTCTTT 59.513 37.037 0.00 0.00 34.98 2.52
2436 2524 6.959639 TTAGGAAACTGAGCAGAAAATTGT 57.040 33.333 4.21 0.00 43.88 2.71
2513 2601 1.187087 GGAGAGTACCACTGGACCAG 58.813 60.000 20.45 20.45 37.52 4.00
2606 2694 8.999431 AGTCAGTTTACAAAATATTCGATGTGT 58.001 29.630 10.22 0.00 0.00 3.72
2754 2842 7.770366 TGACAGTTCACTAGGTAAAGTATGA 57.230 36.000 0.00 0.00 0.00 2.15
2923 3012 7.836479 ACTGGAGGTCTGGTTTAGTATATAC 57.164 40.000 4.60 4.60 0.00 1.47
2925 3014 5.771666 TGGAGGTCTGGTTTAGTATATACCG 59.228 44.000 9.32 0.00 44.44 4.02
3255 3344 5.324409 TCCAAACTTCTGCATTGAAGGTAT 58.676 37.500 17.26 3.76 42.51 2.73
3428 3526 7.759489 ACAGTTGCATTTAGTTTCCTAATCA 57.241 32.000 0.00 0.00 33.27 2.57
3670 3769 2.651071 GCTTTCTGCCTTTCTGCCT 58.349 52.632 0.00 0.00 35.15 4.75
3671 3770 0.964700 GCTTTCTGCCTTTCTGCCTT 59.035 50.000 0.00 0.00 35.15 4.35
3672 3771 1.067985 GCTTTCTGCCTTTCTGCCTTC 60.068 52.381 0.00 0.00 35.15 3.46
3771 3872 2.627515 TCTTCTGACAGCAAGCAGTT 57.372 45.000 0.00 0.00 33.90 3.16
3780 3881 1.884579 CAGCAAGCAGTTGACCTGAAT 59.115 47.619 0.00 0.00 44.49 2.57
3858 3959 3.584406 AGGAACTGGACTCATCACATGAA 59.416 43.478 0.00 0.00 36.40 2.57
4093 4194 5.934402 ACCGAGTCCTTATGTATTTCTGT 57.066 39.130 0.00 0.00 0.00 3.41
4237 4338 0.257039 ACTGATTGCAGGGATCCACC 59.743 55.000 15.23 1.09 46.60 4.61
4592 4693 2.863704 GCAGGTGGCACAAGACAATTTC 60.864 50.000 20.82 0.00 44.16 2.17
4621 4722 1.002868 CCACAGCTGGAGGTTCAGG 60.003 63.158 19.93 2.74 40.55 3.86
4784 4885 9.461312 ACTGATGTAAGGAATGCTATTAAAACA 57.539 29.630 0.00 0.00 0.00 2.83
4801 4902 0.250901 ACAGCATCACAGACCCAACC 60.251 55.000 0.00 0.00 0.00 3.77
4927 5028 2.093973 ACTTAGACTTGATCCGCCACTG 60.094 50.000 0.00 0.00 0.00 3.66
5020 5121 0.390472 CACCTTCAGCGGGAGTCTTC 60.390 60.000 0.00 0.00 0.00 2.87
5162 5266 0.616111 AGCTGGTACCTCCTCCTGTG 60.616 60.000 14.36 0.00 37.07 3.66
5187 5293 5.536497 TCTATACATGGGATAGGCTCAGA 57.464 43.478 13.88 0.00 0.00 3.27
5194 5300 3.181329 TGGGATAGGCTCAGAAACTGAA 58.819 45.455 0.00 0.00 40.18 3.02
5210 5316 2.132762 CTGAACCGTCCATTATACCGC 58.867 52.381 0.00 0.00 0.00 5.68
5397 5510 6.486657 GCTGGTAGCATATCAATAAAGGTCAA 59.513 38.462 0.00 0.00 41.89 3.18
5434 5547 3.552132 TTGGTTCAGCTGTGTTAGTCA 57.448 42.857 14.67 1.49 0.00 3.41
5489 5604 0.688487 CCCACCCTTACTTTCGGTCA 59.312 55.000 0.00 0.00 0.00 4.02
5492 5607 1.043022 ACCCTTACTTTCGGTCACGT 58.957 50.000 0.00 0.00 41.85 4.49
5522 5637 3.195002 TAGCTCATGTTGCGCCGC 61.195 61.111 4.18 0.00 35.28 6.53
5529 5644 2.039974 ATGTTGCGCCGCTCATTGA 61.040 52.632 11.67 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.456447 TTGAAATTTACGAAGTCACGGTAG 57.544 37.500 0.00 0.00 43.93 3.18
1 2 6.841443 TTTGAAATTTACGAAGTCACGGTA 57.159 33.333 0.00 0.00 43.93 4.02
2 3 5.738118 TTTGAAATTTACGAAGTCACGGT 57.262 34.783 0.00 0.00 43.93 4.83
3 4 6.853872 TCATTTTGAAATTTACGAAGTCACGG 59.146 34.615 0.00 0.00 43.93 4.94
4 5 7.830217 TCATTTTGAAATTTACGAAGTCACG 57.170 32.000 0.00 0.00 43.93 4.35
9 10 8.471457 CGGCATATCATTTTGAAATTTACGAAG 58.529 33.333 0.00 0.00 0.00 3.79
10 11 7.433719 CCGGCATATCATTTTGAAATTTACGAA 59.566 33.333 0.00 0.00 0.00 3.85
11 12 6.915300 CCGGCATATCATTTTGAAATTTACGA 59.085 34.615 0.00 0.00 0.00 3.43
12 13 6.345723 GCCGGCATATCATTTTGAAATTTACG 60.346 38.462 24.80 0.00 0.00 3.18
13 14 6.701400 AGCCGGCATATCATTTTGAAATTTAC 59.299 34.615 31.54 0.00 0.00 2.01
14 15 6.815089 AGCCGGCATATCATTTTGAAATTTA 58.185 32.000 31.54 0.00 0.00 1.40
15 16 5.673514 AGCCGGCATATCATTTTGAAATTT 58.326 33.333 31.54 0.00 0.00 1.82
16 17 5.163426 TGAGCCGGCATATCATTTTGAAATT 60.163 36.000 31.54 0.00 0.00 1.82
17 18 4.341806 TGAGCCGGCATATCATTTTGAAAT 59.658 37.500 31.54 0.06 0.00 2.17
18 19 3.698539 TGAGCCGGCATATCATTTTGAAA 59.301 39.130 31.54 0.00 0.00 2.69
19 20 3.286353 TGAGCCGGCATATCATTTTGAA 58.714 40.909 31.54 0.00 0.00 2.69
20 21 2.880268 CTGAGCCGGCATATCATTTTGA 59.120 45.455 31.54 0.00 0.00 2.69
21 22 2.620115 ACTGAGCCGGCATATCATTTTG 59.380 45.455 31.54 13.72 0.00 2.44
22 23 2.880890 GACTGAGCCGGCATATCATTTT 59.119 45.455 31.54 10.68 0.00 1.82
23 24 2.158769 TGACTGAGCCGGCATATCATTT 60.159 45.455 31.54 13.22 0.00 2.32
24 25 1.417517 TGACTGAGCCGGCATATCATT 59.582 47.619 31.54 17.84 0.00 2.57
25 26 1.051008 TGACTGAGCCGGCATATCAT 58.949 50.000 31.54 13.17 0.00 2.45
26 27 1.051008 ATGACTGAGCCGGCATATCA 58.949 50.000 31.54 24.91 0.00 2.15
27 28 2.072298 GAATGACTGAGCCGGCATATC 58.928 52.381 31.54 18.63 0.00 1.63
28 29 1.606480 CGAATGACTGAGCCGGCATAT 60.606 52.381 31.54 8.11 0.00 1.78
29 30 0.249447 CGAATGACTGAGCCGGCATA 60.249 55.000 31.54 16.21 0.00 3.14
30 31 1.522355 CGAATGACTGAGCCGGCAT 60.522 57.895 31.54 14.28 0.00 4.40
31 32 2.125552 CGAATGACTGAGCCGGCA 60.126 61.111 31.54 7.98 0.00 5.69
32 33 2.892425 CCGAATGACTGAGCCGGC 60.892 66.667 21.89 21.89 33.47 6.13
33 34 1.227089 CTCCGAATGACTGAGCCGG 60.227 63.158 0.00 0.00 41.36 6.13
34 35 1.227089 CCTCCGAATGACTGAGCCG 60.227 63.158 0.00 0.00 0.00 5.52
35 36 0.460987 CACCTCCGAATGACTGAGCC 60.461 60.000 0.00 0.00 0.00 4.70
36 37 1.086634 GCACCTCCGAATGACTGAGC 61.087 60.000 0.00 0.00 0.00 4.26
37 38 0.534412 AGCACCTCCGAATGACTGAG 59.466 55.000 0.00 0.00 0.00 3.35
38 39 0.532573 GAGCACCTCCGAATGACTGA 59.467 55.000 0.00 0.00 0.00 3.41
39 40 0.247460 TGAGCACCTCCGAATGACTG 59.753 55.000 0.00 0.00 0.00 3.51
40 41 1.198713 ATGAGCACCTCCGAATGACT 58.801 50.000 0.00 0.00 0.00 3.41
41 42 2.546795 CCTATGAGCACCTCCGAATGAC 60.547 54.545 0.00 0.00 0.00 3.06
42 43 1.688735 CCTATGAGCACCTCCGAATGA 59.311 52.381 0.00 0.00 0.00 2.57
43 44 1.414181 ACCTATGAGCACCTCCGAATG 59.586 52.381 0.00 0.00 0.00 2.67
44 45 1.414181 CACCTATGAGCACCTCCGAAT 59.586 52.381 0.00 0.00 0.00 3.34
45 46 0.824109 CACCTATGAGCACCTCCGAA 59.176 55.000 0.00 0.00 0.00 4.30
46 47 0.324368 ACACCTATGAGCACCTCCGA 60.324 55.000 0.00 0.00 0.00 4.55
47 48 1.338337 CTACACCTATGAGCACCTCCG 59.662 57.143 0.00 0.00 0.00 4.63
48 49 1.689273 CCTACACCTATGAGCACCTCC 59.311 57.143 0.00 0.00 0.00 4.30
49 50 1.689273 CCCTACACCTATGAGCACCTC 59.311 57.143 0.00 0.00 0.00 3.85
50 51 1.008449 ACCCTACACCTATGAGCACCT 59.992 52.381 0.00 0.00 0.00 4.00
51 52 1.139058 CACCCTACACCTATGAGCACC 59.861 57.143 0.00 0.00 0.00 5.01
52 53 1.831736 ACACCCTACACCTATGAGCAC 59.168 52.381 0.00 0.00 0.00 4.40
53 54 1.831106 CACACCCTACACCTATGAGCA 59.169 52.381 0.00 0.00 0.00 4.26
54 55 1.473434 GCACACCCTACACCTATGAGC 60.473 57.143 0.00 0.00 0.00 4.26
55 56 1.831106 TGCACACCCTACACCTATGAG 59.169 52.381 0.00 0.00 0.00 2.90
56 57 1.945580 TGCACACCCTACACCTATGA 58.054 50.000 0.00 0.00 0.00 2.15
57 58 2.092968 ACATGCACACCCTACACCTATG 60.093 50.000 0.00 0.00 0.00 2.23
58 59 2.092968 CACATGCACACCCTACACCTAT 60.093 50.000 0.00 0.00 0.00 2.57
59 60 1.277842 CACATGCACACCCTACACCTA 59.722 52.381 0.00 0.00 0.00 3.08
60 61 0.036732 CACATGCACACCCTACACCT 59.963 55.000 0.00 0.00 0.00 4.00
61 62 0.250727 ACACATGCACACCCTACACC 60.251 55.000 0.00 0.00 0.00 4.16
62 63 0.874390 CACACATGCACACCCTACAC 59.126 55.000 0.00 0.00 0.00 2.90
63 64 3.320823 CACACATGCACACCCTACA 57.679 52.632 0.00 0.00 0.00 2.74
74 75 1.358725 CCCCTACGAACGCACACATG 61.359 60.000 0.00 0.00 0.00 3.21
75 76 1.079405 CCCCTACGAACGCACACAT 60.079 57.895 0.00 0.00 0.00 3.21
76 77 2.340809 CCCCTACGAACGCACACA 59.659 61.111 0.00 0.00 0.00 3.72
77 78 2.025418 CACCCCTACGAACGCACAC 61.025 63.158 0.00 0.00 0.00 3.82
78 79 1.746322 TTCACCCCTACGAACGCACA 61.746 55.000 0.00 0.00 0.00 4.57
79 80 0.390735 ATTCACCCCTACGAACGCAC 60.391 55.000 0.00 0.00 0.00 5.34
80 81 0.390603 CATTCACCCCTACGAACGCA 60.391 55.000 0.00 0.00 0.00 5.24
81 82 0.390735 ACATTCACCCCTACGAACGC 60.391 55.000 0.00 0.00 0.00 4.84
82 83 2.945447 TACATTCACCCCTACGAACG 57.055 50.000 0.00 0.00 0.00 3.95
83 84 2.870411 GCATACATTCACCCCTACGAAC 59.130 50.000 0.00 0.00 0.00 3.95
84 85 2.482316 CGCATACATTCACCCCTACGAA 60.482 50.000 0.00 0.00 0.00 3.85
85 86 1.067974 CGCATACATTCACCCCTACGA 59.932 52.381 0.00 0.00 0.00 3.43
86 87 1.497991 CGCATACATTCACCCCTACG 58.502 55.000 0.00 0.00 0.00 3.51
87 88 1.226746 GCGCATACATTCACCCCTAC 58.773 55.000 0.30 0.00 0.00 3.18
88 89 0.249699 CGCGCATACATTCACCCCTA 60.250 55.000 8.75 0.00 0.00 3.53
89 90 1.523711 CGCGCATACATTCACCCCT 60.524 57.895 8.75 0.00 0.00 4.79
90 91 1.817941 ACGCGCATACATTCACCCC 60.818 57.895 5.73 0.00 0.00 4.95
91 92 1.351707 CACGCGCATACATTCACCC 59.648 57.895 5.73 0.00 0.00 4.61
92 93 1.297598 GCACGCGCATACATTCACC 60.298 57.895 5.73 0.00 38.36 4.02
93 94 1.423450 TGCACGCGCATACATTCAC 59.577 52.632 5.73 0.00 45.36 3.18
94 95 3.882025 TGCACGCGCATACATTCA 58.118 50.000 5.73 0.00 45.36 2.57
106 107 1.368493 GCAAGCGCTCATATGCACG 60.368 57.895 23.30 11.47 38.63 5.34
107 108 1.723273 TGCAAGCGCTCATATGCAC 59.277 52.632 26.15 4.28 43.32 4.57
108 109 4.222105 TGCAAGCGCTCATATGCA 57.778 50.000 26.15 26.15 45.75 3.96
109 110 0.873054 AGATGCAAGCGCTCATATGC 59.127 50.000 21.88 21.88 39.64 3.14
110 111 1.871676 ACAGATGCAAGCGCTCATATG 59.128 47.619 24.16 24.16 37.77 1.78
111 112 2.251409 ACAGATGCAAGCGCTCATAT 57.749 45.000 12.06 5.22 39.64 1.78
112 113 2.101415 AGTACAGATGCAAGCGCTCATA 59.899 45.455 12.06 0.00 39.64 2.15
113 114 1.134580 AGTACAGATGCAAGCGCTCAT 60.135 47.619 12.06 11.47 39.64 2.90
114 115 0.247460 AGTACAGATGCAAGCGCTCA 59.753 50.000 12.06 5.63 39.64 4.26
115 116 0.649475 CAGTACAGATGCAAGCGCTC 59.351 55.000 12.06 0.00 39.64 5.03
116 117 0.036952 ACAGTACAGATGCAAGCGCT 60.037 50.000 2.64 2.64 39.64 5.92
117 118 0.095935 CACAGTACAGATGCAAGCGC 59.904 55.000 0.00 0.00 39.24 5.92
118 119 1.432514 ACACAGTACAGATGCAAGCG 58.567 50.000 0.00 0.00 0.00 4.68
119 120 5.356882 TTTAACACAGTACAGATGCAAGC 57.643 39.130 0.00 0.00 0.00 4.01
142 143 7.227049 AGATAATGGGTGACGATTTGTTTTT 57.773 32.000 0.00 0.00 39.63 1.94
143 144 6.834168 AGATAATGGGTGACGATTTGTTTT 57.166 33.333 0.00 0.00 39.63 2.43
144 145 7.110155 ACTAGATAATGGGTGACGATTTGTTT 58.890 34.615 0.00 0.00 39.63 2.83
145 146 6.650120 ACTAGATAATGGGTGACGATTTGTT 58.350 36.000 0.00 0.00 39.63 2.83
146 147 6.235231 ACTAGATAATGGGTGACGATTTGT 57.765 37.500 0.00 0.00 39.63 2.83
147 148 6.511767 GCAACTAGATAATGGGTGACGATTTG 60.512 42.308 0.00 0.00 39.63 2.32
148 149 5.527582 GCAACTAGATAATGGGTGACGATTT 59.472 40.000 0.00 0.00 39.63 2.17
149 150 5.057149 GCAACTAGATAATGGGTGACGATT 58.943 41.667 0.00 0.00 41.91 3.34
150 151 4.100963 TGCAACTAGATAATGGGTGACGAT 59.899 41.667 0.00 0.00 0.00 3.73
151 152 3.449377 TGCAACTAGATAATGGGTGACGA 59.551 43.478 0.00 0.00 0.00 4.20
152 153 3.792401 TGCAACTAGATAATGGGTGACG 58.208 45.455 0.00 0.00 0.00 4.35
153 154 5.237344 GTGATGCAACTAGATAATGGGTGAC 59.763 44.000 0.00 0.00 0.00 3.67
154 155 5.368145 GTGATGCAACTAGATAATGGGTGA 58.632 41.667 0.00 0.00 0.00 4.02
155 156 4.516698 GGTGATGCAACTAGATAATGGGTG 59.483 45.833 0.00 0.00 0.00 4.61
156 157 4.165950 TGGTGATGCAACTAGATAATGGGT 59.834 41.667 0.00 0.00 0.00 4.51
157 158 4.717877 TGGTGATGCAACTAGATAATGGG 58.282 43.478 0.00 0.00 0.00 4.00
158 159 8.045507 AGATATGGTGATGCAACTAGATAATGG 58.954 37.037 0.00 0.00 0.00 3.16
159 160 9.445878 AAGATATGGTGATGCAACTAGATAATG 57.554 33.333 0.00 0.00 0.00 1.90
160 161 9.664332 GAAGATATGGTGATGCAACTAGATAAT 57.336 33.333 0.00 0.00 0.00 1.28
161 162 8.650490 TGAAGATATGGTGATGCAACTAGATAA 58.350 33.333 0.00 0.00 0.00 1.75
162 163 8.193953 TGAAGATATGGTGATGCAACTAGATA 57.806 34.615 0.00 0.00 0.00 1.98
163 164 7.071069 TGAAGATATGGTGATGCAACTAGAT 57.929 36.000 0.00 0.00 0.00 1.98
164 165 6.484364 TGAAGATATGGTGATGCAACTAGA 57.516 37.500 0.00 0.00 0.00 2.43
165 166 5.178996 GCTGAAGATATGGTGATGCAACTAG 59.821 44.000 0.00 0.00 0.00 2.57
166 167 5.059161 GCTGAAGATATGGTGATGCAACTA 58.941 41.667 0.00 0.00 0.00 2.24
167 168 3.881688 GCTGAAGATATGGTGATGCAACT 59.118 43.478 0.00 0.00 0.00 3.16
168 169 3.628942 TGCTGAAGATATGGTGATGCAAC 59.371 43.478 0.00 0.00 0.00 4.17
169 170 3.888583 TGCTGAAGATATGGTGATGCAA 58.111 40.909 0.00 0.00 0.00 4.08
170 171 3.564053 TGCTGAAGATATGGTGATGCA 57.436 42.857 0.00 0.00 0.00 3.96
171 172 5.471116 TGTAATGCTGAAGATATGGTGATGC 59.529 40.000 0.00 0.00 0.00 3.91
172 173 6.347160 CGTGTAATGCTGAAGATATGGTGATG 60.347 42.308 0.00 0.00 0.00 3.07
173 174 5.698089 CGTGTAATGCTGAAGATATGGTGAT 59.302 40.000 0.00 0.00 0.00 3.06
174 175 5.049828 CGTGTAATGCTGAAGATATGGTGA 58.950 41.667 0.00 0.00 0.00 4.02
175 176 4.212004 CCGTGTAATGCTGAAGATATGGTG 59.788 45.833 0.00 0.00 0.00 4.17
176 177 4.141711 ACCGTGTAATGCTGAAGATATGGT 60.142 41.667 0.00 0.00 0.00 3.55
177 178 4.380531 ACCGTGTAATGCTGAAGATATGG 58.619 43.478 0.00 0.00 0.00 2.74
178 179 5.292765 AGACCGTGTAATGCTGAAGATATG 58.707 41.667 0.00 0.00 0.00 1.78
179 180 5.537300 AGACCGTGTAATGCTGAAGATAT 57.463 39.130 0.00 0.00 0.00 1.63
180 181 5.593095 ACTAGACCGTGTAATGCTGAAGATA 59.407 40.000 0.00 0.00 0.00 1.98
181 182 3.895232 AGACCGTGTAATGCTGAAGAT 57.105 42.857 0.00 0.00 0.00 2.40
182 183 3.762288 ACTAGACCGTGTAATGCTGAAGA 59.238 43.478 0.00 0.00 0.00 2.87
183 184 4.111375 ACTAGACCGTGTAATGCTGAAG 57.889 45.455 0.00 0.00 0.00 3.02
184 185 4.242475 CAACTAGACCGTGTAATGCTGAA 58.758 43.478 0.00 0.00 0.00 3.02
185 186 3.845178 CAACTAGACCGTGTAATGCTGA 58.155 45.455 0.00 0.00 0.00 4.26
186 187 2.348666 GCAACTAGACCGTGTAATGCTG 59.651 50.000 0.00 0.00 0.00 4.41
187 188 2.028476 TGCAACTAGACCGTGTAATGCT 60.028 45.455 0.00 0.00 33.87 3.79
188 189 2.343101 TGCAACTAGACCGTGTAATGC 58.657 47.619 0.00 6.31 0.00 3.56
189 190 4.032900 GTGATGCAACTAGACCGTGTAATG 59.967 45.833 0.00 0.00 0.00 1.90
190 191 4.181578 GTGATGCAACTAGACCGTGTAAT 58.818 43.478 0.00 0.00 0.00 1.89
191 192 3.581755 GTGATGCAACTAGACCGTGTAA 58.418 45.455 0.00 0.00 0.00 2.41
192 193 2.094390 GGTGATGCAACTAGACCGTGTA 60.094 50.000 0.00 0.00 0.00 2.90
193 194 1.337823 GGTGATGCAACTAGACCGTGT 60.338 52.381 0.00 0.00 0.00 4.49
194 195 1.337728 TGGTGATGCAACTAGACCGTG 60.338 52.381 0.00 0.00 0.00 4.94
195 196 0.973632 TGGTGATGCAACTAGACCGT 59.026 50.000 0.00 0.00 0.00 4.83
196 197 2.315925 ATGGTGATGCAACTAGACCG 57.684 50.000 0.00 0.00 0.00 4.79
197 198 5.220710 AGATATGGTGATGCAACTAGACC 57.779 43.478 0.00 0.00 0.00 3.85
198 199 6.283694 TGAAGATATGGTGATGCAACTAGAC 58.716 40.000 0.00 0.00 0.00 2.59
199 200 6.484364 TGAAGATATGGTGATGCAACTAGA 57.516 37.500 0.00 0.00 0.00 2.43
200 201 5.178996 GCTGAAGATATGGTGATGCAACTAG 59.821 44.000 0.00 0.00 0.00 2.57
201 202 5.059161 GCTGAAGATATGGTGATGCAACTA 58.941 41.667 0.00 0.00 0.00 2.24
202 203 3.881688 GCTGAAGATATGGTGATGCAACT 59.118 43.478 0.00 0.00 0.00 3.16
203 204 3.628942 TGCTGAAGATATGGTGATGCAAC 59.371 43.478 0.00 0.00 0.00 4.17
204 205 3.888583 TGCTGAAGATATGGTGATGCAA 58.111 40.909 0.00 0.00 0.00 4.08
205 206 3.564053 TGCTGAAGATATGGTGATGCA 57.436 42.857 0.00 0.00 0.00 3.96
206 207 5.471116 TGTAATGCTGAAGATATGGTGATGC 59.529 40.000 0.00 0.00 0.00 3.91
207 208 6.347160 CGTGTAATGCTGAAGATATGGTGATG 60.347 42.308 0.00 0.00 0.00 3.07
208 209 5.698089 CGTGTAATGCTGAAGATATGGTGAT 59.302 40.000 0.00 0.00 0.00 3.06
209 210 5.049828 CGTGTAATGCTGAAGATATGGTGA 58.950 41.667 0.00 0.00 0.00 4.02
210 211 4.212004 CCGTGTAATGCTGAAGATATGGTG 59.788 45.833 0.00 0.00 0.00 4.17
211 212 4.141711 ACCGTGTAATGCTGAAGATATGGT 60.142 41.667 0.00 0.00 0.00 3.55
212 213 4.380531 ACCGTGTAATGCTGAAGATATGG 58.619 43.478 0.00 0.00 0.00 2.74
213 214 5.292765 AGACCGTGTAATGCTGAAGATATG 58.707 41.667 0.00 0.00 0.00 1.78
214 215 5.537300 AGACCGTGTAATGCTGAAGATAT 57.463 39.130 0.00 0.00 0.00 1.63
215 216 5.593095 ACTAGACCGTGTAATGCTGAAGATA 59.407 40.000 0.00 0.00 0.00 1.98
216 217 3.895232 AGACCGTGTAATGCTGAAGAT 57.105 42.857 0.00 0.00 0.00 2.40
217 218 3.762288 ACTAGACCGTGTAATGCTGAAGA 59.238 43.478 0.00 0.00 0.00 2.87
218 219 4.111375 ACTAGACCGTGTAATGCTGAAG 57.889 45.455 0.00 0.00 0.00 3.02
219 220 4.242475 CAACTAGACCGTGTAATGCTGAA 58.758 43.478 0.00 0.00 0.00 3.02
220 221 3.845178 CAACTAGACCGTGTAATGCTGA 58.155 45.455 0.00 0.00 0.00 4.26
221 222 2.348666 GCAACTAGACCGTGTAATGCTG 59.651 50.000 0.00 0.00 0.00 4.41
222 223 2.028476 TGCAACTAGACCGTGTAATGCT 60.028 45.455 0.00 0.00 33.87 3.79
223 224 2.343101 TGCAACTAGACCGTGTAATGC 58.657 47.619 0.00 6.31 0.00 3.56
224 225 4.032900 GTGATGCAACTAGACCGTGTAATG 59.967 45.833 0.00 0.00 0.00 1.90
225 226 4.181578 GTGATGCAACTAGACCGTGTAAT 58.818 43.478 0.00 0.00 0.00 1.89
226 227 3.581755 GTGATGCAACTAGACCGTGTAA 58.418 45.455 0.00 0.00 0.00 2.41
227 228 2.094390 GGTGATGCAACTAGACCGTGTA 60.094 50.000 0.00 0.00 0.00 2.90
228 229 1.337823 GGTGATGCAACTAGACCGTGT 60.338 52.381 0.00 0.00 0.00 4.49
229 230 1.337728 TGGTGATGCAACTAGACCGTG 60.338 52.381 0.00 0.00 0.00 4.94
230 231 0.973632 TGGTGATGCAACTAGACCGT 59.026 50.000 0.00 0.00 0.00 4.83
231 232 2.315925 ATGGTGATGCAACTAGACCG 57.684 50.000 0.00 0.00 0.00 4.79
232 233 5.220710 AGATATGGTGATGCAACTAGACC 57.779 43.478 0.00 0.00 0.00 3.85
233 234 6.283694 TGAAGATATGGTGATGCAACTAGAC 58.716 40.000 0.00 0.00 0.00 2.59
241 242 5.471116 TGTAATGCTGAAGATATGGTGATGC 59.529 40.000 0.00 0.00 0.00 3.91
250 251 4.729227 TGACCGTGTAATGCTGAAGATA 57.271 40.909 0.00 0.00 0.00 1.98
269 270 7.040617 GGTCTATATCACATCTCTAACGGTTGA 60.041 40.741 3.07 0.00 0.00 3.18
286 288 5.345202 CCTTCGCGTTAACATGGTCTATATC 59.655 44.000 5.77 0.00 0.00 1.63
291 293 1.274167 TCCTTCGCGTTAACATGGTCT 59.726 47.619 5.77 0.00 0.00 3.85
310 312 3.661936 CGTAGCACGAAAAGCTTTGAGTC 60.662 47.826 13.54 5.87 46.05 3.36
345 347 1.969256 CGCAAGCACAAAACGATGTAC 59.031 47.619 0.00 0.00 30.84 2.90
350 352 2.096466 CAGTATCGCAAGCACAAAACGA 60.096 45.455 0.00 0.00 37.15 3.85
355 357 3.810386 TGTAAACAGTATCGCAAGCACAA 59.190 39.130 0.00 0.00 37.18 3.33
358 360 3.621268 GGATGTAAACAGTATCGCAAGCA 59.379 43.478 0.00 0.00 37.18 3.91
362 364 3.786516 TCGGATGTAAACAGTATCGCA 57.213 42.857 0.00 0.00 0.00 5.10
366 368 5.121142 CGGTTTGTTCGGATGTAAACAGTAT 59.879 40.000 11.65 0.00 36.78 2.12
371 373 3.883631 ACGGTTTGTTCGGATGTAAAC 57.116 42.857 0.00 0.00 33.48 2.01
392 394 0.866427 CGAGCGGCTAGACGAAGATA 59.134 55.000 25.39 0.00 35.47 1.98
396 398 4.189188 GGCGAGCGGCTAGACGAA 62.189 66.667 25.39 0.00 42.94 3.85
406 408 4.753877 TTCGAGACGTGGCGAGCG 62.754 66.667 0.00 0.00 37.85 5.03
407 409 3.173240 GTTCGAGACGTGGCGAGC 61.173 66.667 0.00 0.00 37.85 5.03
408 410 1.134530 GATGTTCGAGACGTGGCGAG 61.135 60.000 0.00 0.00 37.85 5.03
432 436 2.284625 TCGGGGTGATGCTGGAGT 60.285 61.111 0.00 0.00 0.00 3.85
449 453 0.973632 TCACAGCTATGACGGTTGGT 59.026 50.000 0.00 0.00 0.00 3.67
453 457 3.288092 TCTGTATCACAGCTATGACGGT 58.712 45.455 0.00 0.00 45.54 4.83
501 505 4.867599 GCTCGCGGGGTACGGAAG 62.868 72.222 8.71 0.00 44.51 3.46
515 520 3.172106 GCTAAGGGGGAGGGGCTC 61.172 72.222 0.00 0.00 0.00 4.70
518 523 4.817909 ACGGCTAAGGGGGAGGGG 62.818 72.222 0.00 0.00 0.00 4.79
522 527 2.042230 GAGGACGGCTAAGGGGGA 60.042 66.667 0.00 0.00 0.00 4.81
552 561 4.505808 TGTTGCATTTGGCTGGAATAATG 58.494 39.130 0.00 0.00 45.15 1.90
567 576 3.610585 CGTAATGTTTCCCGTTGTTGCAT 60.611 43.478 0.00 0.00 0.00 3.96
568 577 2.287069 CGTAATGTTTCCCGTTGTTGCA 60.287 45.455 0.00 0.00 0.00 4.08
569 578 2.031857 TCGTAATGTTTCCCGTTGTTGC 60.032 45.455 0.00 0.00 0.00 4.17
570 579 3.249080 AGTCGTAATGTTTCCCGTTGTTG 59.751 43.478 0.00 0.00 0.00 3.33
572 581 3.116079 AGTCGTAATGTTTCCCGTTGT 57.884 42.857 0.00 0.00 0.00 3.32
573 582 4.460505 GAAAGTCGTAATGTTTCCCGTTG 58.539 43.478 0.00 0.00 0.00 4.10
575 584 2.733026 CGAAAGTCGTAATGTTTCCCGT 59.267 45.455 0.00 0.00 34.72 5.28
576 585 2.473376 GCGAAAGTCGTAATGTTTCCCG 60.473 50.000 0.00 0.00 42.81 5.14
577 586 2.159612 GGCGAAAGTCGTAATGTTTCCC 60.160 50.000 0.00 0.00 42.81 3.97
582 591 2.410730 CGAAAGGCGAAAGTCGTAATGT 59.589 45.455 0.00 0.00 42.81 2.71
619 628 0.896940 ACCGAGCTTACCGTTGGAGA 60.897 55.000 0.00 0.00 0.00 3.71
717 726 1.495584 GAGATTATCCGCGGCGCAAA 61.496 55.000 32.61 19.27 0.00 3.68
754 763 3.492337 AGGGTTTTCGGCTCATGTTTTA 58.508 40.909 0.00 0.00 0.00 1.52
791 801 6.763610 TCTCTTGTTCTTCTTCTTGAGGTTTC 59.236 38.462 0.00 0.00 0.00 2.78
822 832 2.499693 CCTCCTTGTTTCTCTCTCCTCC 59.500 54.545 0.00 0.00 0.00 4.30
828 838 1.905894 AGAGCCCTCCTTGTTTCTCTC 59.094 52.381 0.00 0.00 0.00 3.20
843 853 2.035961 GGGAAAAACCAACTCAAGAGCC 59.964 50.000 0.00 0.00 41.20 4.70
1462 1508 1.359848 GCTGAACGATCGAATGTGGT 58.640 50.000 24.34 0.00 0.00 4.16
1524 1601 3.194542 TCAGCTAGCAGAAACTCTTCCTC 59.805 47.826 18.83 0.00 31.28 3.71
1551 1628 1.728971 CCATTCGAGCTCACTGTCAAC 59.271 52.381 15.40 0.00 0.00 3.18
1599 1676 2.436173 CCCTTAGTCATGGGAGAGTTCC 59.564 54.545 0.00 0.00 46.15 3.62
1607 1684 0.034186 TTGCTGCCCTTAGTCATGGG 60.034 55.000 0.00 0.00 46.00 4.00
1623 1700 1.816224 ACCGTGGGAACATTACATTGC 59.184 47.619 0.00 0.00 46.14 3.56
1626 1703 3.054655 AGCTAACCGTGGGAACATTACAT 60.055 43.478 0.00 0.00 46.14 2.29
1666 1743 4.585955 ATCTAACACGGCGATCATAACT 57.414 40.909 16.62 0.00 0.00 2.24
1972 2049 7.329717 CACTTTAGACATTCAAGGTGAGACTAC 59.670 40.741 0.00 0.00 34.63 2.73
2056 2143 7.566879 ACCAGGACAATCTCTTATCTCATAAGT 59.433 37.037 0.00 0.00 42.21 2.24
2071 2158 7.707035 CACTATAAGTTCAGTACCAGGACAATC 59.293 40.741 0.00 0.00 0.00 2.67
2072 2159 7.556844 CACTATAAGTTCAGTACCAGGACAAT 58.443 38.462 0.00 0.00 0.00 2.71
2073 2160 6.573680 GCACTATAAGTTCAGTACCAGGACAA 60.574 42.308 0.00 0.00 0.00 3.18
2124 2211 7.074502 CACTGCAAAAAGAGAGTTGACTATTC 58.925 38.462 0.00 0.00 0.00 1.75
2192 2280 2.746269 TCAAAGCAATTCAGCAAGCAC 58.254 42.857 0.00 0.00 36.85 4.40
2194 2282 7.115947 GGATATAATCAAAGCAATTCAGCAAGC 59.884 37.037 0.00 0.00 36.85 4.01
2301 2389 6.493116 AGAACCGTAATAGAACACTATGTCG 58.507 40.000 0.00 0.00 0.00 4.35
2316 2404 4.757657 TGCAGCTAATTGAAAGAACCGTAA 59.242 37.500 0.00 0.00 0.00 3.18
2319 2407 3.189287 AGTGCAGCTAATTGAAAGAACCG 59.811 43.478 0.00 0.00 0.00 4.44
2324 2412 5.368256 AACAGAGTGCAGCTAATTGAAAG 57.632 39.130 0.00 0.00 0.00 2.62
2325 2413 5.106555 GCTAACAGAGTGCAGCTAATTGAAA 60.107 40.000 0.00 0.00 0.00 2.69
2326 2414 4.393062 GCTAACAGAGTGCAGCTAATTGAA 59.607 41.667 0.00 0.00 0.00 2.69
2327 2415 3.935203 GCTAACAGAGTGCAGCTAATTGA 59.065 43.478 0.00 0.00 0.00 2.57
2383 2471 7.614494 TGTGAAGAAGATACATGAAGATGTCA 58.386 34.615 0.00 0.00 42.14 3.58
2384 2472 8.659925 ATGTGAAGAAGATACATGAAGATGTC 57.340 34.615 0.00 0.00 42.14 3.06
2436 2524 6.721318 ACTTCAGACTGGGCATTTTCTATTA 58.279 36.000 1.81 0.00 0.00 0.98
2513 2601 1.468520 TGCTCGCTTGATACCTTTTGC 59.531 47.619 0.00 0.00 0.00 3.68
2548 2636 1.896220 AGAGCGCACCTTCAATTGAA 58.104 45.000 19.45 19.45 0.00 2.69
2606 2694 7.757941 TTATCATCAAATGACCAAAGTGACA 57.242 32.000 0.00 0.00 43.01 3.58
2775 2863 9.979578 AAGCAACAAACATACATCATCTTTTTA 57.020 25.926 0.00 0.00 0.00 1.52
2814 2902 1.980765 TCTTTGTCAGCAGACCTGGAT 59.019 47.619 6.80 0.00 44.33 3.41
2923 3012 6.420604 ACAGTACAAAGCAAATTTCATTTCGG 59.579 34.615 0.00 0.00 0.00 4.30
2925 3014 8.579682 AGACAGTACAAAGCAAATTTCATTTC 57.420 30.769 0.00 0.00 0.00 2.17
2983 3072 5.940470 AGACATTAAAGCACTAAACTCCAGG 59.060 40.000 0.00 0.00 0.00 4.45
3017 3106 6.934561 GCTTTTGCACCTACAGAAATTAAG 57.065 37.500 0.00 0.00 46.58 1.85
3295 3384 9.439500 AAAGCATGAATATAGCAACAAAAACAT 57.561 25.926 0.00 0.00 0.00 2.71
3368 3466 8.903820 AGCAAATAAACATCCCTCTGTAATAAC 58.096 33.333 0.00 0.00 0.00 1.89
3577 3676 8.325787 TGTGCTTTATTCCTCTGGTTATCTTAA 58.674 33.333 0.00 0.00 0.00 1.85
3665 3764 2.551459 CTGTGAACTTTGAGGAAGGCAG 59.449 50.000 0.00 0.00 39.79 4.85
3666 3765 2.092429 ACTGTGAACTTTGAGGAAGGCA 60.092 45.455 0.00 0.00 39.79 4.75
3667 3766 2.576615 ACTGTGAACTTTGAGGAAGGC 58.423 47.619 0.00 0.00 39.79 4.35
3668 3767 5.765182 ACAATACTGTGAACTTTGAGGAAGG 59.235 40.000 0.00 0.00 35.45 3.46
3669 3768 6.708054 AGACAATACTGTGAACTTTGAGGAAG 59.292 38.462 0.00 0.00 37.36 3.46
3670 3769 6.483307 CAGACAATACTGTGAACTTTGAGGAA 59.517 38.462 0.00 0.00 35.30 3.36
3671 3770 5.991606 CAGACAATACTGTGAACTTTGAGGA 59.008 40.000 0.00 0.00 35.30 3.71
3672 3771 5.334414 GCAGACAATACTGTGAACTTTGAGG 60.334 44.000 0.00 0.00 39.73 3.86
3713 3813 6.118170 TGCATTTTGTTTCATCAGGGAAAAA 58.882 32.000 0.00 0.00 38.41 1.94
3718 3818 6.563222 AATTTGCATTTTGTTTCATCAGGG 57.437 33.333 0.00 0.00 0.00 4.45
3771 3872 8.439971 AGGACAATAATGCTAATATTCAGGTCA 58.560 33.333 0.00 0.00 0.00 4.02
3858 3959 3.618351 CTCATCCAACCTGCATTCTTCT 58.382 45.455 0.00 0.00 0.00 2.85
3948 4049 6.499172 TCTCTGCAGAATCAGTAACTATTCG 58.501 40.000 18.85 0.00 37.22 3.34
4128 4229 7.342284 TCCTTACCTGTAAGTGAGGAATCTTAG 59.658 40.741 14.22 0.00 46.36 2.18
4592 4693 0.586802 CAGCTGTGGATGCATGATCG 59.413 55.000 2.46 0.00 30.87 3.69
4784 4885 0.478072 TTGGTTGGGTCTGTGATGCT 59.522 50.000 0.00 0.00 0.00 3.79
4801 4902 2.799412 GAGTATCGAGCAGCCTTGATTG 59.201 50.000 0.00 0.00 41.46 2.67
4847 4948 2.133553 CGAGCCAGTAATCAGCATCAG 58.866 52.381 0.00 0.00 0.00 2.90
4927 5028 0.376852 TCATTGCTATTTCGCCACGC 59.623 50.000 0.00 0.00 0.00 5.34
5020 5121 1.676006 GAATCTGCGGTTACCCAATGG 59.324 52.381 0.00 0.00 37.80 3.16
5162 5266 4.406972 TGAGCCTATCCCATGTATAGATGC 59.593 45.833 4.33 8.66 0.00 3.91
5187 5293 4.186159 CGGTATAATGGACGGTTCAGTTT 58.814 43.478 0.00 0.00 0.00 2.66
5194 5300 0.761702 AGGGCGGTATAATGGACGGT 60.762 55.000 0.00 0.00 0.00 4.83
5197 5303 1.697982 AGGAAGGGCGGTATAATGGAC 59.302 52.381 0.00 0.00 0.00 4.02
5210 5316 1.834263 CACAGTCCCTCTAAGGAAGGG 59.166 57.143 1.55 1.55 44.06 3.95
5489 5604 1.671742 CTACACAGGAGCCCAACGT 59.328 57.895 0.00 0.00 0.00 3.99
5492 5607 0.835971 TGAGCTACACAGGAGCCCAA 60.836 55.000 0.00 0.00 41.06 4.12
5790 6078 6.260493 GGGACAATTGATCATCTCTTTCTGAG 59.740 42.308 13.59 0.00 43.96 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.