Multiple sequence alignment - TraesCS2A01G031000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G031000 chr2A 100.000 5369 0 0 1 5369 14298357 14303725 0.000000e+00 9915.0
1 TraesCS2A01G031000 chr2A 89.113 3371 343 12 987 4347 13850877 13847521 0.000000e+00 4170.0
2 TraesCS2A01G031000 chr2A 86.073 2671 361 4 1683 4349 14471112 14468449 0.000000e+00 2861.0
3 TraesCS2A01G031000 chr2A 83.232 2797 440 14 1566 4346 13137800 13135017 0.000000e+00 2540.0
4 TraesCS2A01G031000 chr2A 79.875 800 89 41 4376 5140 13846847 13846085 2.220000e-143 520.0
5 TraesCS2A01G031000 chr2A 93.162 117 6 2 5124 5238 689713762 689713878 2.570000e-38 171.0
6 TraesCS2A01G031000 chr2A 75.812 277 44 9 1058 1318 13138308 13138039 9.450000e-23 119.0
7 TraesCS2A01G031000 chr2A 95.349 43 2 0 5238 5280 13846082 13846040 9.650000e-08 69.4
8 TraesCS2A01G031000 chr2B 88.968 3381 350 14 981 4349 21909189 21912558 0.000000e+00 4156.0
9 TraesCS2A01G031000 chr2B 88.332 3411 295 47 998 4346 22781670 22785039 0.000000e+00 3999.0
10 TraesCS2A01G031000 chr2B 85.960 2678 362 7 1677 4349 20365056 20367724 0.000000e+00 2850.0
11 TraesCS2A01G031000 chr2B 85.372 2673 364 9 1683 4349 20076626 20073975 0.000000e+00 2745.0
12 TraesCS2A01G031000 chr2B 81.121 3337 534 56 1058 4346 19440906 19444194 0.000000e+00 2584.0
13 TraesCS2A01G031000 chr2B 82.516 2814 451 24 1553 4344 19396773 19393979 0.000000e+00 2433.0
14 TraesCS2A01G031000 chr2B 95.843 1299 36 9 3852 5141 21223271 21221982 0.000000e+00 2084.0
15 TraesCS2A01G031000 chr2B 85.618 890 76 23 21 882 21227202 21226337 0.000000e+00 887.0
16 TraesCS2A01G031000 chr2B 81.695 814 110 23 4345 5140 21913356 21914148 4.530000e-180 641.0
17 TraesCS2A01G031000 chr2B 97.727 132 3 0 5238 5369 21221980 21221849 1.500000e-55 228.0
18 TraesCS2A01G031000 chr2B 94.059 101 5 1 5238 5338 22787110 22787209 9.310000e-33 152.0
19 TraesCS2A01G031000 chr2B 92.222 90 7 0 5238 5327 21914151 21914240 1.570000e-25 128.0
20 TraesCS2A01G031000 chr5B 99.010 101 1 0 5139 5239 223038241 223038341 1.190000e-41 182.0
21 TraesCS2A01G031000 chr5B 99.010 101 1 0 5139 5239 300936711 300936811 1.190000e-41 182.0
22 TraesCS2A01G031000 chr2D 98.077 104 2 0 5138 5241 593274343 593274240 1.190000e-41 182.0
23 TraesCS2A01G031000 chr2D 99.000 100 1 0 5140 5239 107204178 107204079 4.270000e-41 180.0
24 TraesCS2A01G031000 chr7D 97.170 106 2 1 5136 5241 407716635 407716531 1.540000e-40 178.0
25 TraesCS2A01G031000 chr7D 93.860 114 7 0 5142 5255 617181760 617181647 7.150000e-39 172.0
26 TraesCS2A01G031000 chr7B 95.575 113 2 3 5140 5252 159510700 159510591 1.540000e-40 178.0
27 TraesCS2A01G031000 chr7B 93.333 120 6 1 5122 5241 413721654 413721537 5.530000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G031000 chr2A 14298357 14303725 5368 False 9915.000000 9915 100.000000 1 5369 1 chr2A.!!$F1 5368
1 TraesCS2A01G031000 chr2A 14468449 14471112 2663 True 2861.000000 2861 86.073000 1683 4349 1 chr2A.!!$R1 2666
2 TraesCS2A01G031000 chr2A 13846040 13850877 4837 True 1586.466667 4170 88.112333 987 5280 3 chr2A.!!$R3 4293
3 TraesCS2A01G031000 chr2A 13135017 13138308 3291 True 1329.500000 2540 79.522000 1058 4346 2 chr2A.!!$R2 3288
4 TraesCS2A01G031000 chr2B 20365056 20367724 2668 False 2850.000000 2850 85.960000 1677 4349 1 chr2B.!!$F2 2672
5 TraesCS2A01G031000 chr2B 20073975 20076626 2651 True 2745.000000 2745 85.372000 1683 4349 1 chr2B.!!$R2 2666
6 TraesCS2A01G031000 chr2B 19440906 19444194 3288 False 2584.000000 2584 81.121000 1058 4346 1 chr2B.!!$F1 3288
7 TraesCS2A01G031000 chr2B 19393979 19396773 2794 True 2433.000000 2433 82.516000 1553 4344 1 chr2B.!!$R1 2791
8 TraesCS2A01G031000 chr2B 22781670 22787209 5539 False 2075.500000 3999 91.195500 998 5338 2 chr2B.!!$F4 4340
9 TraesCS2A01G031000 chr2B 21909189 21914240 5051 False 1641.666667 4156 87.628333 981 5327 3 chr2B.!!$F3 4346
10 TraesCS2A01G031000 chr2B 21221849 21227202 5353 True 1066.333333 2084 93.062667 21 5369 3 chr2B.!!$R3 5348

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 964 0.032130 TCGATAGGATGGCAACTCGC 59.968 55.0 0.00 0.0 41.28 5.03 F
995 1021 0.036765 AAGACCAAATCGCACGCCTA 60.037 50.0 0.00 0.0 0.00 3.93 F
1741 2287 0.163788 GACGGTGTTCAACGATGCAG 59.836 55.0 17.05 0.0 0.00 4.41 F
2953 3524 0.391661 GTCGATTGGCAAGCTCCTGA 60.392 55.0 14.16 0.1 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 2870 0.107654 GCGTAGGGCAGAGGAAACAT 60.108 55.0 0.00 0.00 42.87 2.71 R
2689 3260 0.788995 CTGCAGAAGCTTGTGAGACG 59.211 55.0 26.47 7.49 42.74 4.18 R
3093 3664 0.820871 ACTCGAGTGATCCCTGAAGC 59.179 55.0 19.30 0.00 0.00 3.86 R
4700 8218 0.534203 TAATTGGCCGATCTTCGCCC 60.534 55.0 5.76 0.00 37.97 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.823157 TCAGGAAAAATGTTGATGGCATG 58.177 39.130 3.81 0.00 0.00 4.06
85 89 9.638239 ACATGTGTGACATTTAAAAATATGTCC 57.362 29.630 14.18 8.33 46.36 4.02
88 92 7.805542 TGTGTGACATTTAAAAATATGTCCACG 59.194 33.333 20.96 0.00 46.36 4.94
89 93 7.272515 GTGTGACATTTAAAAATATGTCCACGG 59.727 37.037 14.18 0.00 46.36 4.94
100 104 2.421751 TGTCCACGGGTCTTGAAAAA 57.578 45.000 0.00 0.00 0.00 1.94
295 301 8.865590 ACGTGCATTTAAAGAAATTAACAAGT 57.134 26.923 0.00 0.00 32.73 3.16
426 432 9.814507 TGTATAACGTGTATTGAAAATGTTGAC 57.185 29.630 0.00 0.00 0.00 3.18
430 436 6.734137 ACGTGTATTGAAAATGTTGACATGT 58.266 32.000 0.00 0.00 36.56 3.21
431 437 6.636447 ACGTGTATTGAAAATGTTGACATGTG 59.364 34.615 1.15 0.00 35.00 3.21
432 438 6.398830 CGTGTATTGAAAATGTTGACATGTGC 60.399 38.462 1.15 0.00 36.56 4.57
446 453 7.436376 TGTTGACATGTGCGAAAAATAAAATGA 59.564 29.630 1.15 0.00 0.00 2.57
447 454 7.565450 TGACATGTGCGAAAAATAAAATGAG 57.435 32.000 1.15 0.00 0.00 2.90
452 459 9.861138 CATGTGCGAAAAATAAAATGAGAAAAA 57.139 25.926 0.00 0.00 0.00 1.94
453 460 9.862585 ATGTGCGAAAAATAAAATGAGAAAAAC 57.137 25.926 0.00 0.00 0.00 2.43
470 477 8.987890 TGAGAAAAACAAAGAAAACCAGAAAAG 58.012 29.630 0.00 0.00 0.00 2.27
471 478 7.806690 AGAAAAACAAAGAAAACCAGAAAAGC 58.193 30.769 0.00 0.00 0.00 3.51
472 479 7.661437 AGAAAAACAAAGAAAACCAGAAAAGCT 59.339 29.630 0.00 0.00 0.00 3.74
473 480 6.726258 AAACAAAGAAAACCAGAAAAGCTG 57.274 33.333 0.00 0.00 44.49 4.24
474 481 5.405935 ACAAAGAAAACCAGAAAAGCTGT 57.594 34.783 0.00 0.00 43.33 4.40
478 485 7.875554 ACAAAGAAAACCAGAAAAGCTGTAAAA 59.124 29.630 0.00 0.00 43.33 1.52
479 486 8.382875 CAAAGAAAACCAGAAAAGCTGTAAAAG 58.617 33.333 0.00 0.00 43.33 2.27
480 487 6.573434 AGAAAACCAGAAAAGCTGTAAAAGG 58.427 36.000 0.00 0.00 43.33 3.11
488 495 7.361286 CCAGAAAAGCTGTAAAAGGACATAGAC 60.361 40.741 0.00 0.00 43.33 2.59
511 518 9.110502 AGACAAACAAAAGGTAAAACAAAAACA 57.889 25.926 0.00 0.00 0.00 2.83
575 588 5.454471 CCCAAGGGTCATTTTGTCATTTTGA 60.454 40.000 0.00 0.00 0.00 2.69
576 589 6.232692 CCAAGGGTCATTTTGTCATTTTGAT 58.767 36.000 0.00 0.00 0.00 2.57
580 593 4.996122 GGTCATTTTGTCATTTTGATGCCA 59.004 37.500 0.00 0.00 0.00 4.92
600 613 2.452813 GCATCGGACGCGTGATTGT 61.453 57.895 20.70 0.00 0.00 2.71
635 661 0.391263 GCGAGGTGGTTAGGTTCCAG 60.391 60.000 0.00 0.00 35.49 3.86
639 665 2.901839 GAGGTGGTTAGGTTCCAGTGTA 59.098 50.000 0.00 0.00 35.49 2.90
686 712 7.595130 GTCAGGTTCCACTCACAAATAAAAATC 59.405 37.037 0.00 0.00 0.00 2.17
689 715 6.443792 GTTCCACTCACAAATAAAAATCGGT 58.556 36.000 0.00 0.00 0.00 4.69
690 716 6.642707 TCCACTCACAAATAAAAATCGGTT 57.357 33.333 0.00 0.00 0.00 4.44
701 727 2.172851 AAATCGGTTGGCTACGTTCA 57.827 45.000 0.00 0.00 0.00 3.18
738 764 6.881570 TGGTAGGCTAGAAACCATAGTTAAC 58.118 40.000 2.71 0.00 38.36 2.01
752 778 5.181245 CCATAGTTAACAGACAAGTGGTTGG 59.819 44.000 8.61 0.00 38.07 3.77
757 783 6.485648 AGTTAACAGACAAGTGGTTGGTATTC 59.514 38.462 8.61 0.00 38.07 1.75
759 785 4.642429 ACAGACAAGTGGTTGGTATTCTC 58.358 43.478 0.00 0.00 38.07 2.87
761 787 3.323979 AGACAAGTGGTTGGTATTCTCGT 59.676 43.478 0.00 0.00 38.07 4.18
768 794 4.624452 GTGGTTGGTATTCTCGTCTTGTAC 59.376 45.833 0.00 0.00 0.00 2.90
788 814 3.454375 ACCGCGTGTTTTATATGAGGAG 58.546 45.455 4.92 0.00 0.00 3.69
796 822 7.279313 GCGTGTTTTATATGAGGAGGAAAAGTA 59.721 37.037 0.00 0.00 0.00 2.24
808 834 1.947456 GGAAAAGTATGGGACGGCATC 59.053 52.381 0.00 0.00 0.00 3.91
819 845 4.248842 CGGCATCCACCCGGCATA 62.249 66.667 0.00 0.00 41.99 3.14
820 846 2.194597 GGCATCCACCCGGCATAA 59.805 61.111 0.00 0.00 0.00 1.90
821 847 1.454847 GGCATCCACCCGGCATAAA 60.455 57.895 0.00 0.00 0.00 1.40
822 848 0.827507 GGCATCCACCCGGCATAAAT 60.828 55.000 0.00 0.00 0.00 1.40
830 856 4.515944 TCCACCCGGCATAAATAAATTACG 59.484 41.667 0.00 0.00 0.00 3.18
882 908 2.034124 CTTGGCCAGTGGGGATTATTG 58.966 52.381 12.15 0.00 40.01 1.90
884 910 1.341877 TGGCCAGTGGGGATTATTGTG 60.342 52.381 12.15 0.00 40.01 3.33
885 911 0.746659 GCCAGTGGGGATTATTGTGC 59.253 55.000 12.15 0.00 40.01 4.57
886 912 1.402787 CCAGTGGGGATTATTGTGCC 58.597 55.000 0.00 0.00 40.01 5.01
887 913 1.063717 CCAGTGGGGATTATTGTGCCT 60.064 52.381 0.00 0.00 40.01 4.75
888 914 2.174639 CCAGTGGGGATTATTGTGCCTA 59.825 50.000 0.00 0.00 40.01 3.93
889 915 3.181429 CCAGTGGGGATTATTGTGCCTAT 60.181 47.826 0.00 0.00 40.01 2.57
890 916 4.042809 CCAGTGGGGATTATTGTGCCTATA 59.957 45.833 0.00 0.00 40.01 1.31
891 917 5.281193 CCAGTGGGGATTATTGTGCCTATAT 60.281 44.000 0.00 0.00 40.01 0.86
892 918 6.069673 CCAGTGGGGATTATTGTGCCTATATA 60.070 42.308 0.00 0.00 40.01 0.86
893 919 7.366823 CCAGTGGGGATTATTGTGCCTATATAT 60.367 40.741 0.00 0.00 40.01 0.86
896 922 7.226720 GTGGGGATTATTGTGCCTATATATTCG 59.773 40.741 0.00 0.00 0.00 3.34
897 923 6.204882 GGGGATTATTGTGCCTATATATTCGC 59.795 42.308 0.00 0.00 0.00 4.70
898 924 6.204882 GGGATTATTGTGCCTATATATTCGCC 59.795 42.308 0.00 0.00 0.00 5.54
900 926 3.671008 TTGTGCCTATATATTCGCCGT 57.329 42.857 0.00 0.00 0.00 5.68
901 927 3.226346 TGTGCCTATATATTCGCCGTC 57.774 47.619 0.00 0.00 0.00 4.79
903 929 1.133598 TGCCTATATATTCGCCGTCGG 59.866 52.381 6.99 6.99 36.13 4.79
904 930 1.133790 GCCTATATATTCGCCGTCGGT 59.866 52.381 13.94 0.00 36.13 4.69
905 931 2.355756 GCCTATATATTCGCCGTCGGTA 59.644 50.000 13.94 0.00 36.13 4.02
906 932 3.547613 GCCTATATATTCGCCGTCGGTAG 60.548 52.174 13.94 7.84 36.13 3.18
907 933 3.003068 CCTATATATTCGCCGTCGGTAGG 59.997 52.174 13.94 9.33 36.13 3.18
908 934 1.896220 TATATTCGCCGTCGGTAGGT 58.104 50.000 13.94 0.00 36.13 3.08
909 935 1.896220 ATATTCGCCGTCGGTAGGTA 58.104 50.000 13.94 2.30 36.13 3.08
910 936 1.229428 TATTCGCCGTCGGTAGGTAG 58.771 55.000 13.94 0.00 36.13 3.18
913 939 2.803479 GCCGTCGGTAGGTAGTGG 59.197 66.667 13.94 0.00 0.00 4.00
915 941 1.805254 CCGTCGGTAGGTAGTGGTG 59.195 63.158 2.08 0.00 0.00 4.17
916 942 1.660560 CCGTCGGTAGGTAGTGGTGG 61.661 65.000 2.08 0.00 0.00 4.61
917 943 1.660560 CGTCGGTAGGTAGTGGTGGG 61.661 65.000 0.00 0.00 0.00 4.61
919 945 0.114954 TCGGTAGGTAGTGGTGGGTT 59.885 55.000 0.00 0.00 0.00 4.11
920 946 0.533951 CGGTAGGTAGTGGTGGGTTC 59.466 60.000 0.00 0.00 0.00 3.62
921 947 0.533951 GGTAGGTAGTGGTGGGTTCG 59.466 60.000 0.00 0.00 0.00 3.95
922 948 1.549203 GTAGGTAGTGGTGGGTTCGA 58.451 55.000 0.00 0.00 0.00 3.71
923 949 2.105766 GTAGGTAGTGGTGGGTTCGAT 58.894 52.381 0.00 0.00 0.00 3.59
924 950 2.537633 AGGTAGTGGTGGGTTCGATA 57.462 50.000 0.00 0.00 0.00 2.92
925 951 2.385803 AGGTAGTGGTGGGTTCGATAG 58.614 52.381 0.00 0.00 0.00 2.08
926 952 1.411612 GGTAGTGGTGGGTTCGATAGG 59.588 57.143 0.00 0.00 0.00 2.57
927 953 2.381911 GTAGTGGTGGGTTCGATAGGA 58.618 52.381 0.00 0.00 0.00 2.94
929 955 1.762957 AGTGGTGGGTTCGATAGGATG 59.237 52.381 0.00 0.00 0.00 3.51
930 956 1.128200 TGGTGGGTTCGATAGGATGG 58.872 55.000 0.00 0.00 0.00 3.51
931 957 0.250338 GGTGGGTTCGATAGGATGGC 60.250 60.000 0.00 0.00 0.00 4.40
932 958 0.468226 GTGGGTTCGATAGGATGGCA 59.532 55.000 0.00 0.00 0.00 4.92
933 959 1.134220 GTGGGTTCGATAGGATGGCAA 60.134 52.381 0.00 0.00 0.00 4.52
934 960 1.134220 TGGGTTCGATAGGATGGCAAC 60.134 52.381 0.00 0.00 0.00 4.17
935 961 1.141053 GGGTTCGATAGGATGGCAACT 59.859 52.381 0.00 0.00 37.61 3.16
936 962 2.484889 GGTTCGATAGGATGGCAACTC 58.515 52.381 0.00 0.00 37.61 3.01
937 963 2.128035 GTTCGATAGGATGGCAACTCG 58.872 52.381 0.00 0.00 37.61 4.18
938 964 0.032130 TCGATAGGATGGCAACTCGC 59.968 55.000 0.00 0.00 41.28 5.03
939 965 0.249447 CGATAGGATGGCAACTCGCA 60.249 55.000 0.00 0.00 45.17 5.10
940 966 1.506493 GATAGGATGGCAACTCGCAG 58.494 55.000 0.00 0.00 45.17 5.18
941 967 0.533755 ATAGGATGGCAACTCGCAGC 60.534 55.000 0.00 0.00 45.17 5.25
948 974 3.114616 CAACTCGCAGCCTCCGTG 61.115 66.667 0.00 0.00 0.00 4.94
949 975 3.616721 AACTCGCAGCCTCCGTGT 61.617 61.111 0.00 0.00 34.38 4.49
950 976 3.575351 AACTCGCAGCCTCCGTGTC 62.575 63.158 0.00 0.00 32.13 3.67
951 977 3.753434 CTCGCAGCCTCCGTGTCT 61.753 66.667 0.00 0.00 0.00 3.41
952 978 3.691744 CTCGCAGCCTCCGTGTCTC 62.692 68.421 0.00 0.00 0.00 3.36
953 979 4.803426 CGCAGCCTCCGTGTCTCC 62.803 72.222 0.00 0.00 0.00 3.71
954 980 4.459089 GCAGCCTCCGTGTCTCCC 62.459 72.222 0.00 0.00 0.00 4.30
955 981 2.681778 CAGCCTCCGTGTCTCCCT 60.682 66.667 0.00 0.00 0.00 4.20
956 982 1.379977 CAGCCTCCGTGTCTCCCTA 60.380 63.158 0.00 0.00 0.00 3.53
957 983 1.380112 AGCCTCCGTGTCTCCCTAC 60.380 63.158 0.00 0.00 0.00 3.18
958 984 2.772691 GCCTCCGTGTCTCCCTACG 61.773 68.421 0.00 0.00 39.83 3.51
959 985 2.772691 CCTCCGTGTCTCCCTACGC 61.773 68.421 0.00 0.00 38.87 4.42
960 986 1.749638 CTCCGTGTCTCCCTACGCT 60.750 63.158 0.00 0.00 38.87 5.07
961 987 1.716826 CTCCGTGTCTCCCTACGCTC 61.717 65.000 0.00 0.00 38.87 5.03
962 988 2.772691 CCGTGTCTCCCTACGCTCC 61.773 68.421 0.00 0.00 38.87 4.70
963 989 2.799371 GTGTCTCCCTACGCTCCG 59.201 66.667 0.00 0.00 0.00 4.63
964 990 3.138798 TGTCTCCCTACGCTCCGC 61.139 66.667 0.00 0.00 0.00 5.54
965 991 3.138798 GTCTCCCTACGCTCCGCA 61.139 66.667 0.00 0.00 0.00 5.69
966 992 2.123854 TCTCCCTACGCTCCGCAT 60.124 61.111 0.00 0.00 0.00 4.73
967 993 2.194212 TCTCCCTACGCTCCGCATC 61.194 63.158 0.00 0.00 0.00 3.91
968 994 2.123854 TCCCTACGCTCCGCATCT 60.124 61.111 0.00 0.00 0.00 2.90
969 995 2.136196 CTCCCTACGCTCCGCATCTC 62.136 65.000 0.00 0.00 0.00 2.75
970 996 2.336809 CCTACGCTCCGCATCTCC 59.663 66.667 0.00 0.00 0.00 3.71
971 997 2.336809 CTACGCTCCGCATCTCCC 59.663 66.667 0.00 0.00 0.00 4.30
972 998 2.441348 TACGCTCCGCATCTCCCA 60.441 61.111 0.00 0.00 0.00 4.37
973 999 2.685387 CTACGCTCCGCATCTCCCAC 62.685 65.000 0.00 0.00 0.00 4.61
974 1000 4.899239 CGCTCCGCATCTCCCACC 62.899 72.222 0.00 0.00 0.00 4.61
975 1001 3.785859 GCTCCGCATCTCCCACCA 61.786 66.667 0.00 0.00 0.00 4.17
976 1002 2.989639 CTCCGCATCTCCCACCAA 59.010 61.111 0.00 0.00 0.00 3.67
977 1003 1.299648 CTCCGCATCTCCCACCAAA 59.700 57.895 0.00 0.00 0.00 3.28
978 1004 0.745845 CTCCGCATCTCCCACCAAAG 60.746 60.000 0.00 0.00 0.00 2.77
979 1005 1.198094 TCCGCATCTCCCACCAAAGA 61.198 55.000 0.00 0.00 0.00 2.52
980 1006 1.026718 CCGCATCTCCCACCAAAGAC 61.027 60.000 0.00 0.00 0.00 3.01
981 1007 1.026718 CGCATCTCCCACCAAAGACC 61.027 60.000 0.00 0.00 0.00 3.85
982 1008 0.038166 GCATCTCCCACCAAAGACCA 59.962 55.000 0.00 0.00 0.00 4.02
983 1009 1.547675 GCATCTCCCACCAAAGACCAA 60.548 52.381 0.00 0.00 0.00 3.67
984 1010 2.875296 CATCTCCCACCAAAGACCAAA 58.125 47.619 0.00 0.00 0.00 3.28
985 1011 3.434309 CATCTCCCACCAAAGACCAAAT 58.566 45.455 0.00 0.00 0.00 2.32
986 1012 3.154827 TCTCCCACCAAAGACCAAATC 57.845 47.619 0.00 0.00 0.00 2.17
987 1013 1.812571 CTCCCACCAAAGACCAAATCG 59.187 52.381 0.00 0.00 0.00 3.34
988 1014 0.243636 CCCACCAAAGACCAAATCGC 59.756 55.000 0.00 0.00 0.00 4.58
989 1015 0.958091 CCACCAAAGACCAAATCGCA 59.042 50.000 0.00 0.00 0.00 5.10
990 1016 1.335872 CCACCAAAGACCAAATCGCAC 60.336 52.381 0.00 0.00 0.00 5.34
991 1017 0.591170 ACCAAAGACCAAATCGCACG 59.409 50.000 0.00 0.00 0.00 5.34
992 1018 0.729140 CCAAAGACCAAATCGCACGC 60.729 55.000 0.00 0.00 0.00 5.34
993 1019 0.729140 CAAAGACCAAATCGCACGCC 60.729 55.000 0.00 0.00 0.00 5.68
994 1020 0.889186 AAAGACCAAATCGCACGCCT 60.889 50.000 0.00 0.00 0.00 5.52
995 1021 0.036765 AAGACCAAATCGCACGCCTA 60.037 50.000 0.00 0.00 0.00 3.93
996 1022 0.739813 AGACCAAATCGCACGCCTAC 60.740 55.000 0.00 0.00 0.00 3.18
1010 1036 0.512952 GCCTACACACACGCTGAAAG 59.487 55.000 0.00 0.00 0.00 2.62
1020 1046 0.536006 ACGCTGAAAGGAAGCAAGCT 60.536 50.000 0.00 0.00 40.86 3.74
1318 1359 0.179134 CAGGGACGCCTTCTACTTCG 60.179 60.000 0.00 0.00 0.00 3.79
1319 1360 1.518792 GGGACGCCTTCTACTTCGC 60.519 63.158 0.00 0.00 0.00 4.70
1338 1379 1.897560 CCCAAGACCTTCAAGACACC 58.102 55.000 0.00 0.00 0.00 4.16
1356 1397 2.047274 ATCGACTGCCACAACCCG 60.047 61.111 0.00 0.00 0.00 5.28
1380 1489 1.513586 GGTTCGTAGCCGTCGTCAG 60.514 63.158 0.00 0.00 35.01 3.51
1392 1501 2.266055 CGTCAGTCCAAGCCCCTC 59.734 66.667 0.00 0.00 0.00 4.30
1415 1524 1.302832 CCCTCAGGTGGTGTGCTTC 60.303 63.158 0.00 0.00 0.00 3.86
1479 1681 6.376299 CCAAGAAGATCATCAAGGACATCAAA 59.624 38.462 0.10 0.00 0.00 2.69
1499 1701 5.589855 TCAAAGCTGTGAATCAAGAAACTCA 59.410 36.000 3.39 0.00 0.00 3.41
1508 1710 8.469200 TGTGAATCAAGAAACTCAAAAGATTGT 58.531 29.630 0.00 0.00 37.79 2.71
1721 2267 1.433534 GGGAAGACAACTCTTGCTCG 58.566 55.000 2.54 0.00 42.90 5.03
1724 2270 2.062519 GAAGACAACTCTTGCTCGGAC 58.937 52.381 0.00 0.00 36.82 4.79
1741 2287 0.163788 GACGGTGTTCAACGATGCAG 59.836 55.000 17.05 0.00 0.00 4.41
1785 2331 4.019858 TCAAATGTTGGGTGTCAGTTTCA 58.980 39.130 0.00 0.00 0.00 2.69
1816 2365 1.449246 AAGATGGAGCTCGCAGCAC 60.449 57.895 18.47 9.53 45.56 4.40
1842 2391 1.476845 TAAGGTCGGTCAAGCCAGCA 61.477 55.000 0.00 0.00 36.97 4.41
1914 2475 2.290916 GCTCCGTCGATCTCTTACATCA 59.709 50.000 0.00 0.00 0.00 3.07
2091 2658 0.949105 ACACCGTGAATCCGCTCAAC 60.949 55.000 5.28 0.00 0.00 3.18
2141 2708 4.219288 GGAACATGCTTTTCCAAGTGATCT 59.781 41.667 8.36 0.00 42.04 2.75
2158 2725 5.429762 AGTGATCTTGGGAATGTCTATCCAA 59.570 40.000 0.00 0.00 38.80 3.53
2168 2735 6.122277 GGAATGTCTATCCAAATCTTCACCA 58.878 40.000 0.00 0.00 36.92 4.17
2178 2745 4.009675 CAAATCTTCACCAGATCGGGAAA 58.990 43.478 19.55 10.91 41.93 3.13
2241 2808 2.520968 GTGGGAGGTTTGCTGGGT 59.479 61.111 0.00 0.00 0.00 4.51
2380 2950 4.433283 GCTTCGCATATTGCAGTTTGTTTG 60.433 41.667 1.93 0.00 45.36 2.93
2389 2959 3.656651 GCAGTTTGTTTGCAAAAGACC 57.343 42.857 14.67 1.68 45.01 3.85
2542 3113 5.139727 TCTTTCAGGAAATCAAGCTTGGAA 58.860 37.500 25.73 15.73 0.00 3.53
2677 3248 2.015588 GCCATCTGTCTGTCACCATGG 61.016 57.143 11.19 11.19 35.79 3.66
2689 3260 2.166664 GTCACCATGGACAGTCTACCTC 59.833 54.545 21.47 0.00 37.73 3.85
2836 3407 3.338818 AACAGTTGCGTGTTCTTGATG 57.661 42.857 0.00 0.00 35.71 3.07
2840 3411 2.942376 AGTTGCGTGTTCTTGATGTCAA 59.058 40.909 0.00 0.00 0.00 3.18
2856 3427 6.446318 TGATGTCAATTGCTTTAACTCCAAC 58.554 36.000 0.00 0.00 0.00 3.77
2953 3524 0.391661 GTCGATTGGCAAGCTCCTGA 60.392 55.000 14.16 0.10 0.00 3.86
2988 3559 1.879380 TGCTTCACTGGGAAATGTTCG 59.121 47.619 0.00 0.00 34.44 3.95
3006 3577 5.060506 TGTTCGTTTGATAAGCTTCCTGAA 58.939 37.500 0.00 0.00 0.00 3.02
3047 3618 1.034838 TTGCGGCACCTTCTTGTTGT 61.035 50.000 0.05 0.00 0.00 3.32
3093 3664 1.221414 GCATTGGTCGGCTAGCTAAG 58.779 55.000 15.72 6.86 0.00 2.18
3108 3679 2.433970 AGCTAAGCTTCAGGGATCACTC 59.566 50.000 0.00 0.00 33.89 3.51
3128 3699 5.007626 CACTCGAGTTCCACATTGAAAAGAA 59.992 40.000 17.26 0.00 0.00 2.52
3142 3713 5.456921 TGAAAAGAAGGAAGGGCATAGAT 57.543 39.130 0.00 0.00 0.00 1.98
3156 3727 4.343526 GGGCATAGATCAGAAGAGTTGAGA 59.656 45.833 0.00 0.00 0.00 3.27
3179 3750 0.541863 ATCAATGGTCTCCGTGGGTC 59.458 55.000 0.00 0.00 0.00 4.46
3187 3758 2.612221 GGTCTCCGTGGGTCACTAAAAG 60.612 54.545 0.00 0.00 31.34 2.27
3201 3772 7.601886 GGGTCACTAAAAGTAAAAGGTCTAGAC 59.398 40.741 14.87 14.87 0.00 2.59
3351 4393 0.811281 GCTTAAAGCCGCACCAAGAT 59.189 50.000 0.00 0.00 34.48 2.40
3745 5614 4.091509 GTGAAGTTACCATTGAGCGTACAG 59.908 45.833 0.00 0.00 0.00 2.74
3840 5800 0.944386 CTGTCCACTTCAACGGGTTG 59.056 55.000 5.20 5.20 41.71 3.77
3841 5801 0.253610 TGTCCACTTCAACGGGTTGT 59.746 50.000 11.00 0.00 41.16 3.32
3933 5968 5.010617 TGAAGAAATAGGGTTGCTTGTTTCC 59.989 40.000 0.00 0.00 0.00 3.13
4408 7917 0.322098 TAACACCCATGCTTCCCACG 60.322 55.000 0.00 0.00 0.00 4.94
4501 8010 1.153588 GACCAAATGCCCGCAATGG 60.154 57.895 18.27 18.27 40.55 3.16
4611 8129 6.628919 TTATTTCATGAGCATGATGAGTGG 57.371 37.500 13.40 0.00 40.55 4.00
4682 8200 2.086054 AGATGTCGTGGAGTTGCTTC 57.914 50.000 0.00 0.00 0.00 3.86
4700 8218 2.004583 TCGCACTCCGTTTGATAAGG 57.995 50.000 0.00 0.00 38.35 2.69
4701 8219 1.006832 CGCACTCCGTTTGATAAGGG 58.993 55.000 0.00 0.00 40.01 3.95
4703 8221 1.379527 CACTCCGTTTGATAAGGGGC 58.620 55.000 0.00 0.00 39.30 5.80
4705 8223 0.177141 CTCCGTTTGATAAGGGGCGA 59.823 55.000 0.00 0.00 39.30 5.54
4707 8225 1.014352 CCGTTTGATAAGGGGCGAAG 58.986 55.000 0.00 0.00 35.99 3.79
4801 8328 4.401202 GTCATGGGAAATAATCAAACCGGT 59.599 41.667 0.00 0.00 0.00 5.28
4809 8336 0.673437 AATCAAACCGGTGCCAACTG 59.327 50.000 8.52 0.00 0.00 3.16
4846 8374 2.099592 GGAGGAAAATCATCGCAATGCA 59.900 45.455 5.91 0.00 32.58 3.96
4910 8513 8.911965 TGTTGTGCATTTGGATGTTGTATATAT 58.088 29.630 0.00 0.00 35.63 0.86
5096 8740 4.082026 CCTTGATGAAATCCCTGTCAAACC 60.082 45.833 0.00 0.00 44.73 3.27
5111 8755 2.050691 CAAACCGATGGTTCTTTTGCG 58.949 47.619 1.02 0.00 46.20 4.85
5141 8785 4.728772 TCAAATGTCCATTCCAGTCAAGT 58.271 39.130 0.00 0.00 0.00 3.16
5142 8786 5.875224 TCAAATGTCCATTCCAGTCAAGTA 58.125 37.500 0.00 0.00 0.00 2.24
5143 8787 5.705441 TCAAATGTCCATTCCAGTCAAGTAC 59.295 40.000 0.00 0.00 0.00 2.73
5144 8788 5.505181 AATGTCCATTCCAGTCAAGTACT 57.495 39.130 0.00 0.00 39.81 2.73
5145 8789 4.537135 TGTCCATTCCAGTCAAGTACTC 57.463 45.455 0.00 0.00 35.76 2.59
5146 8790 3.260884 TGTCCATTCCAGTCAAGTACTCC 59.739 47.826 0.00 0.00 35.76 3.85
5147 8791 2.838202 TCCATTCCAGTCAAGTACTCCC 59.162 50.000 0.00 0.00 35.76 4.30
5148 8792 2.840651 CCATTCCAGTCAAGTACTCCCT 59.159 50.000 0.00 0.00 35.76 4.20
5149 8793 3.118592 CCATTCCAGTCAAGTACTCCCTC 60.119 52.174 0.00 0.00 35.76 4.30
5150 8794 2.233305 TCCAGTCAAGTACTCCCTCC 57.767 55.000 0.00 0.00 35.76 4.30
5151 8795 0.818296 CCAGTCAAGTACTCCCTCCG 59.182 60.000 0.00 0.00 35.76 4.63
5152 8796 1.546961 CAGTCAAGTACTCCCTCCGT 58.453 55.000 0.00 0.00 35.76 4.69
5153 8797 1.893801 CAGTCAAGTACTCCCTCCGTT 59.106 52.381 0.00 0.00 35.76 4.44
5154 8798 2.094649 CAGTCAAGTACTCCCTCCGTTC 60.095 54.545 0.00 0.00 35.76 3.95
5155 8799 1.204231 GTCAAGTACTCCCTCCGTTCC 59.796 57.143 0.00 0.00 0.00 3.62
5156 8800 1.203087 TCAAGTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
5157 8801 1.621814 CAAGTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
5158 8802 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
5159 8803 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
5160 8804 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
5161 8805 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5162 8806 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5163 8807 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5164 8808 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5165 8809 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5166 8810 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5167 8811 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5168 8812 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5169 8813 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5170 8814 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5171 8815 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5172 8816 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5173 8817 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5174 8818 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
5175 8819 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
5176 8820 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
5177 8821 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
5178 8822 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
5179 8823 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
5180 8824 7.040062 CCAAAATAGATGACCCAACTTTGTACA 60.040 37.037 0.00 0.00 0.00 2.90
5181 8825 8.356657 CAAAATAGATGACCCAACTTTGTACAA 58.643 33.333 3.59 3.59 0.00 2.41
5182 8826 8.472007 AAATAGATGACCCAACTTTGTACAAA 57.528 30.769 19.53 19.53 0.00 2.83
5183 8827 5.767816 AGATGACCCAACTTTGTACAAAC 57.232 39.130 17.01 6.44 0.00 2.93
5184 8828 5.445964 AGATGACCCAACTTTGTACAAACT 58.554 37.500 17.01 5.83 0.00 2.66
5185 8829 5.891551 AGATGACCCAACTTTGTACAAACTT 59.108 36.000 17.01 11.53 0.00 2.66
5186 8830 5.986501 TGACCCAACTTTGTACAAACTTT 57.013 34.783 17.01 10.24 0.00 2.66
5187 8831 5.715070 TGACCCAACTTTGTACAAACTTTG 58.285 37.500 17.01 19.63 0.00 2.77
5189 8833 6.433404 TGACCCAACTTTGTACAAACTTTGTA 59.567 34.615 23.78 9.86 43.27 2.41
5224 8868 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
5225 8869 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
5226 8870 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
5227 8871 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
5228 8872 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
5229 8873 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
5230 8874 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
5231 8875 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
5232 8876 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
5233 8877 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5234 8878 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5235 8879 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5236 8880 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.658799 TCAACATTTTTCCTGAATTACACAAAA 57.341 25.926 0.00 0.00 0.00 2.44
26 27 7.002250 TGCCATCAACATTTTTCCTGAATTA 57.998 32.000 0.00 0.00 0.00 1.40
32 33 5.486735 TTCATGCCATCAACATTTTTCCT 57.513 34.783 0.00 0.00 0.00 3.36
168 173 5.431420 TGCAACACGTGAACATTTTCTAT 57.569 34.783 25.01 0.00 32.36 1.98
171 176 4.831741 TTTGCAACACGTGAACATTTTC 57.168 36.364 25.01 0.08 0.00 2.29
385 391 9.217278 ACACGTTATACATTTTTGGTATACACA 57.783 29.630 5.01 0.00 34.39 3.72
405 411 7.167302 CACATGTCAACATTTTCAATACACGTT 59.833 33.333 0.00 0.00 33.61 3.99
420 426 7.436376 TCATTTTATTTTTCGCACATGTCAACA 59.564 29.630 0.00 0.00 0.00 3.33
426 432 9.861138 TTTTTCTCATTTTATTTTTCGCACATG 57.139 25.926 0.00 0.00 0.00 3.21
446 453 7.661437 AGCTTTTCTGGTTTTCTTTGTTTTTCT 59.339 29.630 0.00 0.00 0.00 2.52
447 454 7.746034 CAGCTTTTCTGGTTTTCTTTGTTTTTC 59.254 33.333 0.00 0.00 39.15 2.29
470 477 6.554334 TGTTTGTCTATGTCCTTTTACAGC 57.446 37.500 0.00 0.00 31.70 4.40
471 478 9.450807 CTTTTGTTTGTCTATGTCCTTTTACAG 57.549 33.333 0.00 0.00 31.70 2.74
472 479 8.410141 CCTTTTGTTTGTCTATGTCCTTTTACA 58.590 33.333 0.00 0.00 0.00 2.41
473 480 8.410912 ACCTTTTGTTTGTCTATGTCCTTTTAC 58.589 33.333 0.00 0.00 0.00 2.01
474 481 8.528044 ACCTTTTGTTTGTCTATGTCCTTTTA 57.472 30.769 0.00 0.00 0.00 1.52
478 485 8.410912 GTTTTACCTTTTGTTTGTCTATGTCCT 58.589 33.333 0.00 0.00 0.00 3.85
479 486 8.192110 TGTTTTACCTTTTGTTTGTCTATGTCC 58.808 33.333 0.00 0.00 0.00 4.02
480 487 9.575783 TTGTTTTACCTTTTGTTTGTCTATGTC 57.424 29.630 0.00 0.00 0.00 3.06
488 495 9.723447 ACTTGTTTTTGTTTTACCTTTTGTTTG 57.277 25.926 0.00 0.00 0.00 2.93
511 518 5.221441 GGCCATTTGACCAGTTTTTCTACTT 60.221 40.000 0.00 0.00 0.00 2.24
522 529 0.037975 GCACTTGGCCATTTGACCAG 60.038 55.000 6.09 0.37 37.24 4.00
523 530 0.469705 AGCACTTGGCCATTTGACCA 60.470 50.000 6.09 0.00 46.50 4.02
549 562 0.608130 GACAAAATGACCCTTGGGCC 59.392 55.000 5.46 0.00 0.00 5.80
580 593 1.447838 AATCACGCGTCCGATGCTT 60.448 52.632 9.86 0.00 38.29 3.91
614 627 1.675219 GAACCTAACCACCTCGCCA 59.325 57.895 0.00 0.00 0.00 5.69
646 672 1.900486 ACCTGACCAGCAACTACTACC 59.100 52.381 0.00 0.00 0.00 3.18
647 673 3.586892 GAACCTGACCAGCAACTACTAC 58.413 50.000 0.00 0.00 0.00 2.73
653 679 0.179018 AGTGGAACCTGACCAGCAAC 60.179 55.000 0.00 0.00 37.80 4.17
654 680 0.108585 GAGTGGAACCTGACCAGCAA 59.891 55.000 0.00 0.00 37.80 3.91
655 681 1.053835 TGAGTGGAACCTGACCAGCA 61.054 55.000 0.00 0.00 37.80 4.41
656 682 0.603975 GTGAGTGGAACCTGACCAGC 60.604 60.000 0.00 0.00 37.80 4.85
686 712 2.759538 TTTTTGAACGTAGCCAACCG 57.240 45.000 0.00 0.00 0.00 4.44
724 750 6.485648 ACCACTTGTCTGTTAACTATGGTTTC 59.514 38.462 7.22 0.00 34.25 2.78
726 752 5.937111 ACCACTTGTCTGTTAACTATGGTT 58.063 37.500 7.22 0.00 34.25 3.67
738 764 3.679980 CGAGAATACCAACCACTTGTCTG 59.320 47.826 0.00 0.00 0.00 3.51
752 778 2.107178 CGCGGTACAAGACGAGAATAC 58.893 52.381 0.00 0.00 31.48 1.89
757 783 0.662374 AACACGCGGTACAAGACGAG 60.662 55.000 12.47 0.00 36.00 4.18
759 785 0.578211 AAAACACGCGGTACAAGACG 59.422 50.000 12.47 0.00 0.00 4.18
761 787 5.409211 TCATATAAAACACGCGGTACAAGA 58.591 37.500 12.47 0.00 0.00 3.02
768 794 2.800544 CCTCCTCATATAAAACACGCGG 59.199 50.000 12.47 1.27 0.00 6.46
788 814 1.947456 GATGCCGTCCCATACTTTTCC 59.053 52.381 0.00 0.00 0.00 3.13
808 834 4.789784 CGTAATTTATTTATGCCGGGTGG 58.210 43.478 2.18 0.00 38.77 4.61
809 835 4.223659 GCGTAATTTATTTATGCCGGGTG 58.776 43.478 2.18 0.00 43.96 4.61
810 836 3.058777 CGCGTAATTTATTTATGCCGGGT 60.059 43.478 2.18 0.00 45.99 5.28
811 837 3.484683 CGCGTAATTTATTTATGCCGGG 58.515 45.455 2.18 0.00 45.99 5.73
812 838 3.186817 TCCGCGTAATTTATTTATGCCGG 59.813 43.478 4.92 0.00 45.99 6.13
813 839 4.392619 TCCGCGTAATTTATTTATGCCG 57.607 40.909 4.92 1.14 45.99 5.69
814 840 5.116528 GCTTTCCGCGTAATTTATTTATGCC 59.883 40.000 4.92 0.00 45.99 4.40
815 841 5.912955 AGCTTTCCGCGTAATTTATTTATGC 59.087 36.000 4.92 2.12 45.51 3.14
816 842 6.910433 ACAGCTTTCCGCGTAATTTATTTATG 59.090 34.615 4.92 0.00 45.59 1.90
817 843 7.023197 ACAGCTTTCCGCGTAATTTATTTAT 57.977 32.000 4.92 0.00 45.59 1.40
818 844 6.425577 ACAGCTTTCCGCGTAATTTATTTA 57.574 33.333 4.92 0.00 45.59 1.40
819 845 5.305139 ACAGCTTTCCGCGTAATTTATTT 57.695 34.783 4.92 0.00 45.59 1.40
820 846 4.957759 ACAGCTTTCCGCGTAATTTATT 57.042 36.364 4.92 0.00 45.59 1.40
821 847 4.201881 GGAACAGCTTTCCGCGTAATTTAT 60.202 41.667 4.92 0.00 45.59 1.40
822 848 3.125658 GGAACAGCTTTCCGCGTAATTTA 59.874 43.478 4.92 0.00 45.59 1.40
830 856 3.744559 TGTGGAACAGCTTTCCGC 58.255 55.556 23.30 23.30 45.67 5.54
882 908 2.182825 CGACGGCGAATATATAGGCAC 58.817 52.381 16.62 6.95 40.82 5.01
884 910 1.133790 ACCGACGGCGAATATATAGGC 59.866 52.381 15.16 5.06 40.82 3.93
885 911 3.003068 CCTACCGACGGCGAATATATAGG 59.997 52.174 15.16 10.97 40.82 2.57
886 912 3.624861 ACCTACCGACGGCGAATATATAG 59.375 47.826 15.16 5.38 40.82 1.31
887 913 3.609853 ACCTACCGACGGCGAATATATA 58.390 45.455 15.16 0.00 40.82 0.86
888 914 2.440409 ACCTACCGACGGCGAATATAT 58.560 47.619 15.16 0.00 40.82 0.86
889 915 1.896220 ACCTACCGACGGCGAATATA 58.104 50.000 15.16 0.00 40.82 0.86
890 916 1.808945 CTACCTACCGACGGCGAATAT 59.191 52.381 15.16 0.00 40.82 1.28
891 917 1.229428 CTACCTACCGACGGCGAATA 58.771 55.000 15.16 2.68 40.82 1.75
892 918 0.749454 ACTACCTACCGACGGCGAAT 60.749 55.000 15.16 1.18 40.82 3.34
893 919 1.377202 ACTACCTACCGACGGCGAA 60.377 57.895 15.16 0.00 40.82 4.70
896 922 2.048603 ACCACTACCTACCGACGGC 61.049 63.158 15.39 0.00 0.00 5.68
897 923 1.660560 CCACCACTACCTACCGACGG 61.661 65.000 13.61 13.61 0.00 4.79
898 924 1.660560 CCCACCACTACCTACCGACG 61.661 65.000 0.00 0.00 0.00 5.12
900 926 0.114954 AACCCACCACTACCTACCGA 59.885 55.000 0.00 0.00 0.00 4.69
901 927 0.533951 GAACCCACCACTACCTACCG 59.466 60.000 0.00 0.00 0.00 4.02
903 929 1.549203 TCGAACCCACCACTACCTAC 58.451 55.000 0.00 0.00 0.00 3.18
904 930 2.537633 ATCGAACCCACCACTACCTA 57.462 50.000 0.00 0.00 0.00 3.08
905 931 2.385803 CTATCGAACCCACCACTACCT 58.614 52.381 0.00 0.00 0.00 3.08
906 932 1.411612 CCTATCGAACCCACCACTACC 59.588 57.143 0.00 0.00 0.00 3.18
907 933 2.381911 TCCTATCGAACCCACCACTAC 58.618 52.381 0.00 0.00 0.00 2.73
908 934 2.832643 TCCTATCGAACCCACCACTA 57.167 50.000 0.00 0.00 0.00 2.74
909 935 1.762957 CATCCTATCGAACCCACCACT 59.237 52.381 0.00 0.00 0.00 4.00
910 936 1.202651 CCATCCTATCGAACCCACCAC 60.203 57.143 0.00 0.00 0.00 4.16
913 939 0.468226 TGCCATCCTATCGAACCCAC 59.532 55.000 0.00 0.00 0.00 4.61
915 941 1.141053 AGTTGCCATCCTATCGAACCC 59.859 52.381 0.00 0.00 0.00 4.11
916 942 2.484889 GAGTTGCCATCCTATCGAACC 58.515 52.381 0.00 0.00 0.00 3.62
917 943 2.128035 CGAGTTGCCATCCTATCGAAC 58.872 52.381 0.00 0.00 32.13 3.95
919 945 0.032130 GCGAGTTGCCATCCTATCGA 59.968 55.000 0.00 0.00 37.76 3.59
920 946 0.249447 TGCGAGTTGCCATCCTATCG 60.249 55.000 0.00 0.00 45.60 2.92
921 947 1.506493 CTGCGAGTTGCCATCCTATC 58.494 55.000 0.00 0.00 45.60 2.08
922 948 0.533755 GCTGCGAGTTGCCATCCTAT 60.534 55.000 0.00 0.00 45.60 2.57
923 949 1.153369 GCTGCGAGTTGCCATCCTA 60.153 57.895 0.00 0.00 45.60 2.94
924 950 2.437359 GCTGCGAGTTGCCATCCT 60.437 61.111 0.00 0.00 45.60 3.24
931 957 3.114616 CACGGAGGCTGCGAGTTG 61.115 66.667 34.83 18.70 34.49 3.16
932 958 3.575351 GACACGGAGGCTGCGAGTT 62.575 63.158 34.83 17.36 35.07 3.01
933 959 4.057428 GACACGGAGGCTGCGAGT 62.057 66.667 34.83 31.58 37.74 4.18
934 960 3.691744 GAGACACGGAGGCTGCGAG 62.692 68.421 34.83 28.41 34.49 5.03
935 961 3.749064 GAGACACGGAGGCTGCGA 61.749 66.667 34.83 0.00 34.49 5.10
936 962 4.803426 GGAGACACGGAGGCTGCG 62.803 72.222 27.12 27.12 37.19 5.18
937 963 4.459089 GGGAGACACGGAGGCTGC 62.459 72.222 0.00 0.00 0.00 5.25
938 964 1.379977 TAGGGAGACACGGAGGCTG 60.380 63.158 0.00 0.00 0.00 4.85
939 965 1.380112 GTAGGGAGACACGGAGGCT 60.380 63.158 0.00 0.00 0.00 4.58
940 966 2.772691 CGTAGGGAGACACGGAGGC 61.773 68.421 0.00 0.00 34.57 4.70
941 967 2.772691 GCGTAGGGAGACACGGAGG 61.773 68.421 0.00 0.00 38.57 4.30
942 968 1.716826 GAGCGTAGGGAGACACGGAG 61.717 65.000 0.00 0.00 38.57 4.63
943 969 1.748122 GAGCGTAGGGAGACACGGA 60.748 63.158 0.00 0.00 38.57 4.69
944 970 2.772691 GGAGCGTAGGGAGACACGG 61.773 68.421 0.00 0.00 38.57 4.94
945 971 2.799371 GGAGCGTAGGGAGACACG 59.201 66.667 0.00 0.00 41.04 4.49
946 972 2.799371 CGGAGCGTAGGGAGACAC 59.201 66.667 0.00 0.00 0.00 3.67
959 985 0.745845 CTTTGGTGGGAGATGCGGAG 60.746 60.000 0.00 0.00 0.00 4.63
960 986 1.198094 TCTTTGGTGGGAGATGCGGA 61.198 55.000 0.00 0.00 0.00 5.54
961 987 1.026718 GTCTTTGGTGGGAGATGCGG 61.027 60.000 0.00 0.00 0.00 5.69
962 988 1.026718 GGTCTTTGGTGGGAGATGCG 61.027 60.000 0.00 0.00 0.00 4.73
963 989 0.038166 TGGTCTTTGGTGGGAGATGC 59.962 55.000 0.00 0.00 0.00 3.91
964 990 2.584835 TTGGTCTTTGGTGGGAGATG 57.415 50.000 0.00 0.00 0.00 2.90
965 991 3.701664 GATTTGGTCTTTGGTGGGAGAT 58.298 45.455 0.00 0.00 0.00 2.75
966 992 2.552155 CGATTTGGTCTTTGGTGGGAGA 60.552 50.000 0.00 0.00 0.00 3.71
967 993 1.812571 CGATTTGGTCTTTGGTGGGAG 59.187 52.381 0.00 0.00 0.00 4.30
968 994 1.904287 CGATTTGGTCTTTGGTGGGA 58.096 50.000 0.00 0.00 0.00 4.37
969 995 0.243636 GCGATTTGGTCTTTGGTGGG 59.756 55.000 0.00 0.00 0.00 4.61
970 996 0.958091 TGCGATTTGGTCTTTGGTGG 59.042 50.000 0.00 0.00 0.00 4.61
971 997 1.662876 CGTGCGATTTGGTCTTTGGTG 60.663 52.381 0.00 0.00 0.00 4.17
972 998 0.591170 CGTGCGATTTGGTCTTTGGT 59.409 50.000 0.00 0.00 0.00 3.67
973 999 0.729140 GCGTGCGATTTGGTCTTTGG 60.729 55.000 0.00 0.00 0.00 3.28
974 1000 0.729140 GGCGTGCGATTTGGTCTTTG 60.729 55.000 0.00 0.00 0.00 2.77
975 1001 0.889186 AGGCGTGCGATTTGGTCTTT 60.889 50.000 0.00 0.00 0.00 2.52
976 1002 0.036765 TAGGCGTGCGATTTGGTCTT 60.037 50.000 0.00 0.00 0.00 3.01
977 1003 0.739813 GTAGGCGTGCGATTTGGTCT 60.740 55.000 0.00 0.00 0.00 3.85
978 1004 1.017177 TGTAGGCGTGCGATTTGGTC 61.017 55.000 0.00 0.00 0.00 4.02
979 1005 1.004320 TGTAGGCGTGCGATTTGGT 60.004 52.632 0.00 0.00 0.00 3.67
980 1006 1.295357 TGTGTAGGCGTGCGATTTGG 61.295 55.000 0.00 0.00 0.00 3.28
981 1007 0.179225 GTGTGTAGGCGTGCGATTTG 60.179 55.000 0.00 0.00 0.00 2.32
982 1008 0.601576 TGTGTGTAGGCGTGCGATTT 60.602 50.000 0.00 0.00 0.00 2.17
983 1009 1.005512 TGTGTGTAGGCGTGCGATT 60.006 52.632 0.00 0.00 0.00 3.34
984 1010 1.736645 GTGTGTGTAGGCGTGCGAT 60.737 57.895 0.00 0.00 0.00 4.58
985 1011 2.355363 GTGTGTGTAGGCGTGCGA 60.355 61.111 0.00 0.00 0.00 5.10
986 1012 3.762992 CGTGTGTGTAGGCGTGCG 61.763 66.667 0.00 0.00 0.00 5.34
987 1013 4.072088 GCGTGTGTGTAGGCGTGC 62.072 66.667 0.00 0.00 0.00 5.34
988 1014 2.355837 AGCGTGTGTGTAGGCGTG 60.356 61.111 0.00 0.00 36.62 5.34
989 1015 2.355837 CAGCGTGTGTGTAGGCGT 60.356 61.111 0.00 0.00 36.62 5.68
990 1016 1.218875 TTTCAGCGTGTGTGTAGGCG 61.219 55.000 0.00 0.00 36.62 5.52
991 1017 0.512952 CTTTCAGCGTGTGTGTAGGC 59.487 55.000 0.00 0.00 0.00 3.93
992 1018 1.148310 CCTTTCAGCGTGTGTGTAGG 58.852 55.000 0.00 0.00 0.00 3.18
993 1019 2.148916 TCCTTTCAGCGTGTGTGTAG 57.851 50.000 0.00 0.00 0.00 2.74
994 1020 2.479837 CTTCCTTTCAGCGTGTGTGTA 58.520 47.619 0.00 0.00 0.00 2.90
995 1021 1.299541 CTTCCTTTCAGCGTGTGTGT 58.700 50.000 0.00 0.00 0.00 3.72
996 1022 0.040958 GCTTCCTTTCAGCGTGTGTG 60.041 55.000 0.00 0.00 0.00 3.82
1010 1036 0.098376 CATTCTCGCAGCTTGCTTCC 59.902 55.000 6.58 0.00 42.25 3.46
1020 1046 0.749091 CCATGGGCTTCATTCTCGCA 60.749 55.000 2.85 0.00 32.92 5.10
1135 1161 2.710902 CGCAGGACTGGATGTCGGA 61.711 63.158 1.01 0.00 46.24 4.55
1217 1243 2.492090 CGACGAGAAGCTCCAGGG 59.508 66.667 0.00 0.00 0.00 4.45
1274 1300 1.719600 CAGAGCCAGCGCCTTATATC 58.280 55.000 2.29 0.00 34.57 1.63
1318 1359 1.239347 GTGTCTTGAAGGTCTTGGGC 58.761 55.000 0.00 0.00 0.00 5.36
1319 1360 1.142870 TGGTGTCTTGAAGGTCTTGGG 59.857 52.381 0.00 0.00 0.00 4.12
1338 1379 2.390599 CGGGTTGTGGCAGTCGATG 61.391 63.158 0.00 0.00 0.00 3.84
1361 1402 2.202531 GACGACGGCTACGAACCC 60.203 66.667 0.00 0.00 44.60 4.11
1363 1404 0.792356 GACTGACGACGGCTACGAAC 60.792 60.000 0.65 2.52 44.60 3.95
1369 1410 2.651361 CTTGGACTGACGACGGCT 59.349 61.111 0.65 0.00 0.00 5.52
1370 1411 3.112709 GCTTGGACTGACGACGGC 61.113 66.667 0.00 0.00 0.00 5.68
1373 1414 2.047179 GGGGCTTGGACTGACGAC 60.047 66.667 0.00 0.00 0.00 4.34
1374 1415 2.203788 AGGGGCTTGGACTGACGA 60.204 61.111 0.00 0.00 0.00 4.20
1375 1416 2.266055 GAGGGGCTTGGACTGACG 59.734 66.667 0.00 0.00 0.00 4.35
1376 1417 2.671682 GGAGGGGCTTGGACTGAC 59.328 66.667 0.00 0.00 0.00 3.51
1412 1521 1.615392 CAAAAGGGAGGCAGTTGGAAG 59.385 52.381 0.00 0.00 0.00 3.46
1415 1524 0.178964 TCCAAAAGGGAGGCAGTTGG 60.179 55.000 0.00 0.00 42.15 3.77
1479 1681 6.319658 TCTTTTGAGTTTCTTGATTCACAGCT 59.680 34.615 0.00 0.00 0.00 4.24
1499 1701 6.395426 TGTCAAGCAGATCAACAATCTTTT 57.605 33.333 0.00 0.00 42.30 2.27
1508 1710 1.538047 GGCCTTGTCAAGCAGATCAA 58.462 50.000 7.09 0.00 0.00 2.57
1721 2267 1.225376 TGCATCGTTGAACACCGTCC 61.225 55.000 0.00 0.00 0.00 4.79
1724 2270 1.154413 GCTGCATCGTTGAACACCG 60.154 57.895 0.00 0.00 0.00 4.94
1741 2287 1.079888 CAAAATGCTCCCCAACCGC 60.080 57.895 0.00 0.00 0.00 5.68
1816 2365 2.482142 GCTTGACCGACCTTAGGATCTG 60.482 54.545 4.77 0.00 0.00 2.90
1842 2391 1.276859 TGTCAGCAGAGCCATCCCAT 61.277 55.000 0.00 0.00 0.00 4.00
1914 2475 6.531503 TCAAGAACGATCAGATACCTCTTT 57.468 37.500 0.00 0.00 0.00 2.52
1929 2490 5.503031 GCTGTTCCATACATCATCAAGAACG 60.503 44.000 0.00 0.00 35.85 3.95
2141 2708 6.603201 GTGAAGATTTGGATAGACATTCCCAA 59.397 38.462 0.00 0.00 36.94 4.12
2158 2725 3.009033 TGTTTCCCGATCTGGTGAAGATT 59.991 43.478 2.81 0.00 46.12 2.40
2168 2735 2.237143 TCAGCAATCTGTTTCCCGATCT 59.763 45.455 0.00 0.00 41.10 2.75
2202 2769 1.073722 CTTGGCAGCCAGAGGTGAA 59.926 57.895 15.50 0.00 44.53 3.18
2241 2808 4.631377 CAGTGAATTTCGCTCCTTGTATCA 59.369 41.667 9.49 0.00 34.53 2.15
2290 2857 7.357471 AGGGCAGAGGAAACATTATTATCTTT 58.643 34.615 0.00 0.00 0.00 2.52
2300 2870 0.107654 GCGTAGGGCAGAGGAAACAT 60.108 55.000 0.00 0.00 42.87 2.71
2380 2950 6.024552 TGGATCAAACTTATGGTCTTTTGC 57.975 37.500 0.00 0.00 30.94 3.68
2383 2953 5.183904 GTGCTGGATCAAACTTATGGTCTTT 59.816 40.000 0.00 0.00 30.94 2.52
2385 2955 4.263462 TGTGCTGGATCAAACTTATGGTCT 60.263 41.667 0.00 0.00 30.94 3.85
2389 2959 5.048504 ACAAGTGTGCTGGATCAAACTTATG 60.049 40.000 0.00 0.00 41.30 1.90
2617 3188 1.806542 ACAGTTCATGCCATCGTCAAC 59.193 47.619 0.00 0.00 0.00 3.18
2677 3248 2.424557 TGTGAGACGAGGTAGACTGTC 58.575 52.381 0.00 0.00 0.00 3.51
2689 3260 0.788995 CTGCAGAAGCTTGTGAGACG 59.211 55.000 26.47 7.49 42.74 4.18
2811 3382 3.840890 AGAACACGCAACTGTTTTGAA 57.159 38.095 0.00 0.00 34.40 2.69
2836 3407 5.103290 TCGTTGGAGTTAAAGCAATTGAC 57.897 39.130 10.34 0.30 0.00 3.18
2953 3524 4.763793 AGTGAAGCACAATACTTGCAGATT 59.236 37.500 0.00 0.00 42.83 2.40
3006 3577 3.328382 TTGACCAGCATAGTAACGCTT 57.672 42.857 0.00 0.00 35.96 4.68
3047 3618 4.759693 CCAATCCTGCAGTACACTTTGTTA 59.240 41.667 13.81 0.00 0.00 2.41
3093 3664 0.820871 ACTCGAGTGATCCCTGAAGC 59.179 55.000 19.30 0.00 0.00 3.86
3108 3679 4.515191 TCCTTCTTTTCAATGTGGAACTCG 59.485 41.667 0.00 0.00 38.04 4.18
3128 3699 3.903090 CTCTTCTGATCTATGCCCTTCCT 59.097 47.826 0.00 0.00 0.00 3.36
3142 3713 6.429078 CCATTGATGTTTCTCAACTCTTCTGA 59.571 38.462 0.00 0.00 37.93 3.27
3156 3727 2.436417 CCACGGAGACCATTGATGTTT 58.564 47.619 0.00 0.00 0.00 2.83
3187 3758 7.803659 GCTTGAAACATTGTCTAGACCTTTTAC 59.196 37.037 20.11 7.11 0.00 2.01
3201 3772 5.803967 GGCTTCTTCATAGCTTGAAACATTG 59.196 40.000 10.97 2.49 43.64 2.82
3685 5554 3.356290 AGGGAGGAATTTCGACCAATTG 58.644 45.455 0.00 0.00 0.00 2.32
3840 5800 4.633565 GCCTCTATATGCTGCTTATGGAAC 59.366 45.833 17.84 11.73 0.00 3.62
3841 5801 4.533707 AGCCTCTATATGCTGCTTATGGAA 59.466 41.667 17.84 6.85 36.23 3.53
3933 5968 7.532721 GCGACTAAGTTGCAACCTTTGTAGG 62.533 48.000 25.62 18.12 43.45 3.18
4150 6198 7.608153 TCGATCACCAGAACTTTTAGTGAATA 58.392 34.615 0.00 0.00 40.56 1.75
4611 8129 0.796312 CCCGTCTATGCACACACAAC 59.204 55.000 0.00 0.00 0.00 3.32
4682 8200 1.006832 CCCTTATCAAACGGAGTGCG 58.993 55.000 1.13 1.13 45.00 5.34
4700 8218 0.534203 TAATTGGCCGATCTTCGCCC 60.534 55.000 5.76 0.00 37.97 6.13
4701 8219 0.586802 GTAATTGGCCGATCTTCGCC 59.413 55.000 5.76 8.07 38.82 5.54
4703 8221 1.257936 CGTGTAATTGGCCGATCTTCG 59.742 52.381 5.76 5.76 40.07 3.79
4705 8223 1.065709 ACCGTGTAATTGGCCGATCTT 60.066 47.619 5.76 0.00 0.00 2.40
4707 8225 0.655733 CACCGTGTAATTGGCCGATC 59.344 55.000 5.76 0.00 0.00 3.69
4809 8336 4.503714 TCCTCCATAATGTCCTTCCAAC 57.496 45.455 0.00 0.00 0.00 3.77
4846 8374 3.066208 TCCTGATAGGAGGGCATCTTT 57.934 47.619 0.00 0.00 40.06 2.52
4969 8592 6.763135 TCTCTGCATACATATTCAACTCCAAC 59.237 38.462 0.00 0.00 0.00 3.77
4970 8593 6.888105 TCTCTGCATACATATTCAACTCCAA 58.112 36.000 0.00 0.00 0.00 3.53
5096 8740 0.179189 GAGCCGCAAAAGAACCATCG 60.179 55.000 0.00 0.00 0.00 3.84
5111 8755 4.828939 TGGAATGGACATTTGATATGAGCC 59.171 41.667 0.00 0.00 0.00 4.70
5141 8785 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5142 8786 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
5143 8787 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5144 8788 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5145 8789 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5146 8790 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5147 8791 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5148 8792 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5149 8793 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5150 8794 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
5151 8795 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5152 8796 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
5153 8797 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
5154 8798 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
5155 8799 7.881142 TGTACAAAGTTGGGTCATCTATTTTG 58.119 34.615 0.00 0.00 0.00 2.44
5156 8800 8.472007 TTGTACAAAGTTGGGTCATCTATTTT 57.528 30.769 5.64 0.00 0.00 1.82
5157 8801 8.357402 GTTTGTACAAAGTTGGGTCATCTATTT 58.643 33.333 21.12 0.00 0.00 1.40
5158 8802 7.724061 AGTTTGTACAAAGTTGGGTCATCTATT 59.276 33.333 21.12 0.00 30.25 1.73
5159 8803 7.231467 AGTTTGTACAAAGTTGGGTCATCTAT 58.769 34.615 21.12 0.00 30.25 1.98
5160 8804 6.597562 AGTTTGTACAAAGTTGGGTCATCTA 58.402 36.000 21.12 0.00 30.25 1.98
5161 8805 5.445964 AGTTTGTACAAAGTTGGGTCATCT 58.554 37.500 21.12 7.95 30.25 2.90
5162 8806 5.767816 AGTTTGTACAAAGTTGGGTCATC 57.232 39.130 21.12 5.80 30.25 2.92
5163 8807 6.071051 ACAAAGTTTGTACAAAGTTGGGTCAT 60.071 34.615 32.40 19.39 43.27 3.06
5164 8808 5.244178 ACAAAGTTTGTACAAAGTTGGGTCA 59.756 36.000 32.40 7.34 43.27 4.02
5165 8809 5.716094 ACAAAGTTTGTACAAAGTTGGGTC 58.284 37.500 32.40 17.25 43.27 4.46
5166 8810 5.731957 ACAAAGTTTGTACAAAGTTGGGT 57.268 34.783 32.40 28.90 43.27 4.51
5198 8842 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
5199 8843 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
5200 8844 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
5201 8845 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
5202 8846 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
5203 8847 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
5204 8848 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
5205 8849 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
5206 8850 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
5207 8851 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
5208 8852 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
5209 8853 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
5210 8854 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
5211 8855 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5212 8856 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5213 8857 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5214 8858 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5215 8859 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5216 8860 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5217 8861 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
5218 8862 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
5219 8863 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
5220 8864 2.235402 GACATACTCCCTCCGTTCCAAA 59.765 50.000 0.00 0.00 0.00 3.28
5221 8865 1.829222 GACATACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
5222 8866 1.481871 GACATACTCCCTCCGTTCCA 58.518 55.000 0.00 0.00 0.00 3.53
5223 8867 0.751452 GGACATACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 31.83 3.62
5224 8868 1.777941 AGGACATACTCCCTCCGTTC 58.222 55.000 0.00 0.00 40.53 3.95
5225 8869 1.831736 CAAGGACATACTCCCTCCGTT 59.168 52.381 0.00 0.00 40.53 4.44
5226 8870 1.273098 ACAAGGACATACTCCCTCCGT 60.273 52.381 0.00 0.00 40.53 4.69
5227 8871 1.409427 GACAAGGACATACTCCCTCCG 59.591 57.143 0.00 0.00 40.53 4.63
5228 8872 2.432510 CAGACAAGGACATACTCCCTCC 59.567 54.545 0.00 0.00 40.53 4.30
5229 8873 3.366396 TCAGACAAGGACATACTCCCTC 58.634 50.000 0.00 0.00 40.53 4.30
5230 8874 3.474798 TCAGACAAGGACATACTCCCT 57.525 47.619 0.00 0.00 40.53 4.20
5231 8875 4.762289 AATCAGACAAGGACATACTCCC 57.238 45.455 0.00 0.00 40.53 4.30
5232 8876 4.333926 GCAAATCAGACAAGGACATACTCC 59.666 45.833 0.00 0.00 39.81 3.85
5233 8877 4.033358 CGCAAATCAGACAAGGACATACTC 59.967 45.833 0.00 0.00 0.00 2.59
5234 8878 3.935203 CGCAAATCAGACAAGGACATACT 59.065 43.478 0.00 0.00 0.00 2.12
5235 8879 3.684788 ACGCAAATCAGACAAGGACATAC 59.315 43.478 0.00 0.00 0.00 2.39
5236 8880 3.937814 ACGCAAATCAGACAAGGACATA 58.062 40.909 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.